Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 56 of 410
Found at i:14873280 original size:30 final size:30
Alignment explanation
Indices: 14873236--14873324 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
14873226 CAAAGATAAC
14873236 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
14873265 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
14873295 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
14873325 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:14873284 original size:15 final size:15
Alignment explanation
Indices: 14873236--14873315 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
14873226 CAAAGATAAC
*
14873236 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
14873250 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
14873265 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
14873280 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
14873295 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
14873310 AAGAAA
1 AAGAAA
14873316 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:14873324 original size:15 final size:15
Alignment explanation
Indices: 14873247--14873324 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
14873237 AGAAAACCGA
14873247 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
14873262 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
14873276 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
14873291 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
14873307 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
14873322 ATA
1 ATA
14873325 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:14895950 original size:40 final size:40
Alignment explanation
Indices: 14895895--14896057 Score: 184
Period size: 40 Copynumber: 4.1 Consensus size: 40
14895885 TGAATGATAC
* *
14895895 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
14895935 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
14895975 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
14896015 CCGAGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
14896055 CCG
1 CCG
14896058 ACTAAATTCC
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 98 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:14897875 original size:75 final size:75
Alignment explanation
Indices: 14897790--14897937 Score: 217
Period size: 77 Copynumber: 2.0 Consensus size: 75
14897780 GAAAATCAGG
* *
14897790 ATTATTCCCTTAGT-AATAGAGAAGACAAATGGAAAGTTAGAAAAAAAAATTATATTCTTTCCAA
1 ATTATTCCCTTAGTAAATAAAGAAGACAAATGAAAAGTTAGAAAAAAAAATTATATTCTTT-CAA
14897854 AAGAATATAGA
65 AAGAATATAGA
* ** *
14897865 ATTATTCCCTTATTAAAATAAAGAAGACAAATGAAAAGTTAGAAAAAGGAATTATATTCTTTCAG
1 ATTATTCCCTTAGT-AAATAAAGAAGACAAATGAAAAGTTAGAAAAAAAAATTATATTCTTTCAA
14897930 AAGAATAT
65 AAGAATAT
14897938 TAATTTCATA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
75 13 0.20
76 10 0.15
77 42 0.65
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.29
Consensus pattern (75 bp):
ATTATTCCCTTAGTAAATAAAGAAGACAAATGAAAAGTTAGAAAAAAAAATTATATTCTTTCAAA
AGAATATAGA
Found at i:14898159 original size:138 final size:138
Alignment explanation
Indices: 14897914--14898430 Score: 635
Period size: 138 Copynumber: 3.7 Consensus size: 138
14897904 TAGAAAAAGG
* * * * *
14897914 AATTATATTCTTT-CAGAAGAATATTAATTT-CATATCTTTTA-TATTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
* ** * * *
14897976 TATAATTGTTTATATTAATAAATTCAATAAAATGTATACAATTAATATTTTGCATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
14898041 CATATATT
131 CATATATT
* *
14898049 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTGAAATTAATTAG
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
*
14898114 TATAACTGCTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
14898179 CATATATT
131 CATATATT
14898187 AATTATATTCTTTTTCCAAAAGAATATTAATTTCCATGTCTTAATTTCCACGTATTTTATATTTT
1 AATTATATTC--TTTCCAAAAGAATATTAATTTCCATGTC-----TT---C-TA---T-T-TTTT
* *
14898252 GATTAAAATTAATTAATATAACCGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATT
50 GACTAAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATT
14898317 TTGTATGAATCAAATTCATATATT
115 TTGTATGAATCAAATTCATATATT
* * * *** * * *
14898341 AGTTATATTCTTTTCAAAAAAATATTAATTTTTGTGTCTTGTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
*
14898406 TATAACTGTTTAAATTAATAAATTC
66 TATAACTGTTTATATTAATAAATTC
14898431 AACAATTAAT
Statistics
Matches: 334, Mismatches: 29, Indels: 35
0.84 0.07 0.09
Matches are distributed among these distances:
135 13 0.04
136 16 0.05
137 9 0.03
138 136 0.41
140 29 0.09
143 2 0.01
145 2 0.01
147 2 0.01
148 1 0.00
149 2 0.01
152 24 0.07
153 1 0.00
154 97 0.29
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:14898263 original size:154 final size:152
Alignment explanation
Indices: 14898073--14898371 Score: 481
Period size: 154 Copynumber: 2.0 Consensus size: 152
14898063 CAAAAGAATA
* * * * * *
14898073 TTAATTTCCATGTCTTCTATTTTTTGACTGAAATTAATTAGTATAACTGCTTATATTAATAAATT
1 TTAATTTCCACGTATTCTATATTTTGACTAAAATTAATTAATATAACCGCTTATATTAATAAATT
14898138 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTTTC
66 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTC-TTTT-
*
14898203 CAAAAGAATATTAATTTCCATGTC
129 CAAAAAAATATTAATTTCCATGTC
* * *
14898227 TTAATTTCCACGTATTTTATATTTTGATTAAAATTAATTAATATAACCGTTTATATTAATAAATT
1 TTAATTTCCACGTATTCTATATTTTGACTAAAATTAATTAATATAACCGCTTATATTAATAAATT
*
14898292 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAGTTATATTCTTTTCA
66 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTTCA
14898357 AAAAAATATTAATTT
131 AAAAAATATTAATTT
14898372 TTGTGTCTTG
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
152 16 0.12
153 4 0.03
154 114 0.85
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (152 bp):
TTAATTTCCACGTATTCTATATTTTGACTAAAATTAATTAATATAACCGCTTATATTAATAAATT
CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTTCA
AAAAAATATTAATTTCCATGTC
Found at i:14909594 original size:101 final size:101
Alignment explanation
Indices: 14909407--14909641 Score: 328
Period size: 101 Copynumber: 2.3 Consensus size: 101
14909397 TGAATTGACG
* *
14909407 GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGAGCATAGTTGGACCGTGGCAGTGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGAGCATAGTTGGACCATGACAGTGTTT
* **
14909472 ATATATAATACCATAGTTGGGCTATGGCATTCTAAT
66 ATATATAAGACCATAACTGGGCTATGGCATTCTAAT
* * * *
14909508 GATAAGACCATAACTAGGTTATGCCACTATGAACTTAAGA-CTATGGTTGGACCATGACAGTGTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGAGC-ATAGTTGGACCATGACAGTGTT
* **
14909572 TATATGTAAGACTGTAACTGGGCTATGGCATTCTAAT
65 TATATATAAGACCATAACTGGGCTATGGCATTCTAAT
* *
14909609 GATAAGACCATAATTGGGTTATGGCATTATGAA
1 GATAAGACCATAACTGGGTTATGGCACTATGAA
14909642 TGTAAAGGAT
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 1 0.01
101 116 0.99
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (101 bp):
GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGAGCATAGTTGGACCATGACAGTGTTT
ATATATAAGACCATAACTGGGCTATGGCATTCTAAT
Found at i:14910371 original size:2 final size:2
Alignment explanation
Indices: 14910364--14910392 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14910354 GTTAGGAATA
14910364 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14910393 GTGATACTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14912450 original size:30 final size:30
Alignment explanation
Indices: 14912395--14912585 Score: 282
Period size: 30 Copynumber: 6.5 Consensus size: 30
14912385 ATAGTGAATC
14912395 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
14912424 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
14912454 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
14912484 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
14912514 CGCACACTTAGTGCTATATAA---TCAAACG
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
14912542 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
14912572 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14912586 CAATCTTGTC
Statistics
Matches: 151, Mismatches: 6, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
27 2 0.01
28 21 0.14
29 19 0.13
30 108 0.72
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:14920437 original size:30 final size:30
Alignment explanation
Indices: 14920382--14920542 Score: 231
Period size: 30 Copynumber: 5.5 Consensus size: 30
14920372 ATAGTGAATC
14920382 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
14920411 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
14920441 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
14920471 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
14920499 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
14920529 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14920543 CAATCTTGTC
Statistics
Matches: 122, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 19 0.16
30 78 0.64
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:14920533 original size:58 final size:57
Alignment explanation
Indices: 14920382--14920542 Score: 216
Period size: 58 Copynumber: 2.8 Consensus size: 57
14920372 ATAGTGAATC
* *
14920382 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTCAGCTCGCACACTTAGTGCTATATAA--TTCAACT
14920441 CGCACACTTAGTGCTATATAATTTTCAGCTCGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATA-AATTTTCAGCTCGCACACTTAGTGCTATATAATTC-AACT
* * * *
14920499 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-AATTTTCAGCTCGCACACTTAGTGC
14920543 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
57 2 0.02
58 42 0.45
59 18 0.19
60 31 0.33
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATAAATTTTCAGCTCGCACACTTAGTGCTATATAATTCAACT
Found at i:14923007 original size:11 final size:11
Alignment explanation
Indices: 14922991--14923034 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
14922981 AGATAAATAT
14922991 TATTTTATTAA
1 TATTTTATTAA
*
14923002 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
14923015 TATTTTATTAT
1 TATTTTATTAA
14923026 TATTTTATT
1 TATTTTATT
14923035 TAGTATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 6 0.21
13 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14925075 original size:101 final size:99
Alignment explanation
Indices: 14924853--14925080 Score: 298
Period size: 101 Copynumber: 2.3 Consensus size: 99
14924843 GAATTGACGA
* *
14924853 ATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGTCCATGGTTGGACCATGACAGTTTATA
1 ATAAGACCATAACTGGGTTATGGCACTATAAACGTAAGACCATGGTTGGACCATGACAGTTTATA
14924918 TGAAAGACCATAGTTGGGCTATGACATTCTAATG
66 TGAAAGACCATAGTTGGGCTATGACATTCTAATG
** * * * **
14924952 ATAAGACCATATTTAGGCTATGGCA-TAATAAACTTAAGACCATGGTTGGACCATGGTAGTGTTT
1 ATAAGACCATAACTGGGTTATGGCACT-ATAAACGTAAGACCATGGTTGGACCAT-G-ACAGTTT
* * *
14925016 ATATGTAAGACCATAAG-TGGGCTATGGCATTCTGATG
63 ATATGAAAGACCAT-AGTTGGGCTATGACATTCTAATG
14925053 ATAAGACCATAACTGGGTTATGGCACTA
1 ATAAGACCATAACTGGGTTATGGCACTA
14925081 CGAATGTAAA
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
98 1 0.01
99 45 0.42
100 1 0.01
101 58 0.54
102 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.29
Consensus pattern (99 bp):
ATAAGACCATAACTGGGTTATGGCACTATAAACGTAAGACCATGGTTGGACCATGACAGTTTATA
TGAAAGACCATAGTTGGGCTATGACATTCTAATG
Found at i:14925150 original size:24 final size:24
Alignment explanation
Indices: 14925083--14925150 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
14925073 TGGCACTACG
*
14925083 AATGTAAAGTATGAATTGAAGAAA
1 AATGTAAAGTATGAATTGACGAAA
* *
14925107 AATGTAAAGGATGAATTGACGGAA
1 AATGTAAAGTATGAATTGACGAAA
*
14925131 AATTTAAAGTATGAATTGAC
1 AATGTAAAGTATGAATTGAC
14925151 AGTAAATTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.49, C:0.03, G:0.22, T:0.26
Consensus pattern (24 bp):
AATGTAAAGTATGAATTGACGAAA
Found at i:14925157 original size:24 final size:24
Alignment explanation
Indices: 14925087--14925158 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
14925077 ACTACGAATG
*
14925087 TAAAGTATGAATTGA-AGAAAAATG
1 TAAAGTATGAATTGACAG-AAAATT
* *
14925111 TAAAGGATGAATTGACGGAAAATT
1 TAAAGTATGAATTGACAGAAAATT
*
14925135 TAAAGTATGAATTGACAGTAAATT
1 TAAAGTATGAATTGACAGAAAATT
14925159 ACCCAAGTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 40 0.98
25 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAGTATGAATTGACAGAAAATT
Found at i:14925908 original size:2 final size:2
Alignment explanation
Indices: 14925864--14925890 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14925854 GTTAGGAATA
14925864 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14925891 GTGATATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14936417 original size:17 final size:17
Alignment explanation
Indices: 14936372--14936417 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
14936362 TTATCCTAAT
*
14936372 AAATTCTTTTAATTCAA
1 AAATTCTTCTAATTCAA
*
14936389 ACAATTC-ACTAATTCAA
1 A-AATTCTTCTAATTCAA
14936406 AAATTCTTCTAA
1 AAATTCTTCTAA
14936418 ATTCTTACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.21
17 14 0.58
18 5 0.21
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTCTTCTAATTCAA
Found at i:14939054 original size:40 final size:40
Alignment explanation
Indices: 14938999--14939206 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
14938989 TGAATGATAC
* * *
14938999 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
14939039 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
14939079 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
14939119 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
14939159 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
14939199 CC-GGCTAA
1 CCGGGCTAA
14939207 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 146 0.95
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:14941820 original size:12 final size:12
Alignment explanation
Indices: 14941803--14941832 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
14941793 GGACACACGG
14941803 CCGTGTCCATGC
1 CCGTGTCCATGC
14941815 CCGTGTCCATGC
1 CCGTGTCCATGC
14941827 CCGTGT
1 CCGTGT
14941833 AACTCTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.40, G:0.27, T:0.27
Consensus pattern (12 bp):
CCGTGTCCATGC
Found at i:14946714 original size:37 final size:37
Alignment explanation
Indices: 14946671--14946745 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
14946661 TTTTTAAGGT
* * * *
14946671 TTACAAAATAAATTTTCCTATCCGAAGCCACTTTTAG
1 TTACAAAAGAAAATTGCCTATCCAAAGCCACTTTTAG
14946708 TTACAAAAGAAAATTGCCTATCCAAAGCCACTTTTAG
1 TTACAAAAGAAAATTGCCTATCCAAAGCCACTTTTAG
14946745 T
1 T
14946746 CTATCTTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.32
Consensus pattern (37 bp):
TTACAAAAGAAAATTGCCTATCCAAAGCCACTTTTAG
Found at i:14948229 original size:22 final size:22
Alignment explanation
Indices: 14948201--14948247 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
14948191 TTGTTGCTCG
14948201 TCTAACCATTAAAACGAGACAT
1 TCTAACCATTAAAACGAGACAT
14948223 TCTAACCATTAAAACGAGACAT
1 TCTAACCATTAAAACGAGACAT
14948245 TCT
1 TCT
14948248 TCTTCAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (22 bp):
TCTAACCATTAAAACGAGACAT
Found at i:14952691 original size:30 final size:30
Alignment explanation
Indices: 14952657--14952717 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14952647 TCCTTAACTC
14952657 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
14952687 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
14952717 A
1 A
14952718 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:14963435 original size:48 final size:48
Alignment explanation
Indices: 14963297--14963477 Score: 185
Period size: 48 Copynumber: 3.9 Consensus size: 48
14963287 GGGTTAGGTA
* *
14963297 TGATCCCATGTAAGACCATGTCAGGGACATGGCTTTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* **** * *
14963345 TAATTTTGTGTAAGACCATAG-CTAGG-C-T---ATCGGCATCGATATG
1 TGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATG
*
14963388 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * * *
14963436 TGATCCCACGTAAGACTATATCTGGGATATGGCATTGGCATC
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
14963478 CTACCATGTC
Statistics
Matches: 104, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
42 1 0.01
43 31 0.30
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 67 0.64
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:14964412 original size:20 final size:21
Alignment explanation
Indices: 14964387--14964426 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14964377 TCAAGCAGAC
14964387 AAGGGC-ACATGCCCGTGTGG
1 AAGGGCGACATGCCCGTGTGG
14964407 AAGGGCGACATGCCCGTGTG
1 AAGGGCGACATGCCCGTGTG
14964427 TCTTCTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AAGGGCGACATGCCCGTGTGG
Found at i:14965756 original size:48 final size:48
Alignment explanation
Indices: 14965632--14965862 Score: 185
Period size: 48 Copynumber: 4.8 Consensus size: 48
14965622 CAAAGGGTAA
* ** * * **
14965632 AATGCTGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCATACATT
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACTCATATAAC
* ** * *
14965682 AGTGTTGATGCCATGTCCCAGACATGGTCTTACACTGACACATATAAC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
* * * **
14965730 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
* * * * ** *
14965778 GAGGCCGATGCCATGTCCCAGACATGGTCTTACTCTGTGTCTTATAAC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
* * *
14965826 ATTACCGATGCCATGAT-CCAAACGTGGTCTTACACTG
1 AATGCCGATGCCATG-TCCCAAACATGGTCTTACACTG
14965863 GTTCTCATTA
Statistics
Matches: 144, Mismatches: 36, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
48 109 0.76
49 2 0.01
50 33 0.23
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
Found at i:14965824 original size:96 final size:96
Alignment explanation
Indices: 14965688--14965920 Score: 297
Period size: 96 Copynumber: 2.4 Consensus size: 96
14965678 CATTAGTGTT
* *
14965688 GATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATACCGATGCCATGATCCAAAC
14965753 ATGGTCTTACACTGGCTCACATGT-CGAGGCC
66 ATGGTCTTACACTGGCTCACAT-TACGAGGCC
* *** * *
14965784 GATGCCATGTCCCAGACATGGTCTTACTCTGTGTCTTATAACATTACCGATGCCATGATCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATACCGATGCCATGATCCAAAC
* * * * *
14965849 GTGGTCTTACACTGGTTCTCATTATGTGGCC
66 ATGGTCTTACACTGGCTCACATTACGAGGCC
* *
14965880 GATACCATGTCCCAGACATAGTCTTACACTAGCACACATAT
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATAT
14965921 CACTCAAATG
Statistics
Matches: 114, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
95 1 0.01
96 108 0.95
97 1 0.01
98 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATACCGATGCCATGATCCAAAC
ATGGTCTTACACTGGCTCACATTACGAGGCC
Found at i:14965882 original size:48 final size:47
Alignment explanation
Indices: 14965733--14965909 Score: 151
Period size: 48 Copynumber: 3.7 Consensus size: 47
14965723 ATATAACAAT
* * *
14965733 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGT-CGAG
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTGGTTCTCAT-TACGTG
* * * * * *
14965781 GCCGATGCCATGTCCCAGACATGGTCTTACTCT-GTGTCTTATAACATT
1 GCCGATGCCATGT-CCAAACATGGTCTTACACTGGT-TCTCATTACGTG
* * *
14965829 ACCGATGCCATGATCCAAACGTGGTCTTACACTGGTTCTCATTATGTG
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTGGTTCTCATTACGTG
* * *
14965877 GCCGATACCATGTCCCAGACATAGTCTTACACT
1 GCCGATGCCATGT-CCAAACATGGTCTTACACT
14965910 AGCACACATA
Statistics
Matches: 100, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
47 3 0.03
48 94 0.94
49 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCAAACATGGTCTTACACTGGTTCTCATTACGTG
Found at i:14972944 original size:47 final size:47
Alignment explanation
Indices: 14972890--14973178 Score: 353
Period size: 47 Copynumber: 6.1 Consensus size: 47
14972880 TTAGGATTTT
** * * *
14972890 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* * *
14972937 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GAGATAAGGCCAAATGGCCA
* * * *
14972988 ATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* * *
14973035 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* *
14973082 ATGTGATGAATGTGAACATGCATCTATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
* * * *
14973129 ATGTGATGAATGTGAACATGCATATATGAGGTAAGGACGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
14973176 ATG
1 ATG
14973179 CAAAATGTGT
Statistics
Matches: 218, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 172 0.79
49 11 0.05
51 35 0.16
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCAAATGGCCA
Found at i:14973041 original size:22 final size:22
Alignment explanation
Indices: 14973014--14973088 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
14973004 CACGCGTATG
14973014 TGTGATAAGGCCAAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
* ** * *
14973036 TGTGATGAATGTGAACAT-GCGTATG
1 TGTGAT-AAGGCCAA-ATGGC-CA-A
14973061 TGTGATAAGGCCAAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
14973083 TGTGAT
1 TGTGAT
14973089 GAATGTGAAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 12 0.32
23 10 0.26
24 10 0.26
25 6 0.16
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCAAATGGCCAA
Found at i:14973282 original size:46 final size:46
Alignment explanation
Indices: 14973152--14973288 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
14973142 GAACATGCAT
* * * * *
14973152 ATATGAGGTAAGGACGAATGGCTAATGCAAAATGTGTATGAGATAG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGG
* *
14973198 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
14973244 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATG
14973289 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:14973506 original size:37 final size:37
Alignment explanation
Indices: 14973476--14973586 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
14973466 GTGGTGACTA
14973476 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
14973513 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
* * *
14973550 TGTTCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
14973587 CATCTGAGCT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.29
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
Found at i:14974964 original size:40 final size:40
Alignment explanation
Indices: 14974858--14975182 Score: 472
Period size: 40 Copynumber: 8.0 Consensus size: 40
14974848 GAGAGTTATA
*
14974858 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
* *
14974899 ATATAGT-CGGGCTAAGCCCCAAAGAGCATTCGTGCTGGTGT
1 -TATA-TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
14974940 TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
* *
14974981 ATATAGCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
14975022 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
*
14975063 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
14975104 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
14975144 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
14975183 ATGTGTATTC
Statistics
Matches: 257, Mismatches: 20, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.00
40 144 0.56
41 5 0.02
42 106 0.41
43 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:14975196 original size:82 final size:82
Alignment explanation
Indices: 14974858--14975182 Score: 546
Period size: 82 Copynumber: 4.0 Consensus size: 82
14974848 GAGAGTTATA
* * *
14974858 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGTCGGGCTAAGCCCCAAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
14974923 AGCATTCGTGCTGGTGT
66 AGCATTCGTGCTGGTGT
* *
14974940 TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCTCGAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
14975005 AGCATTCGTGCTGGTGT
66 AGCATTCGTGCTGGTGT
14975022 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
14975087 AGCATTCGTGCTGGTGT
66 AGCATTCGTGCTGGTGT
* * *
14975104 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T-TATATCCGGGCTAGGTCCCGAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
* *
14975167 AGCAATCATGCTGGTG
66 AGCATTCGTGCTGGTG
14975183 ATGTGTATTC
Statistics
Matches: 231, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
80 35 0.15
81 1 0.00
82 195 0.84
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (82 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTGGTGT
Found at i:14975396 original size:25 final size:25
Alignment explanation
Indices: 14975346--14975396 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14975336 TGTGTAACAA
* *
14975346 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
14975371 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
14975396 C
1 C
14975397 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:14979087 original size:47 final size:47
Alignment explanation
Indices: 14979033--14979324 Score: 386
Period size: 47 Copynumber: 6.1 Consensus size: 47
14979023 TTAGGATTTT
** * *
14979033 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * * *
14979080 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GAGATAAGGCCGAATGGCCA
* * * * *
14979131 ATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
14979178 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
14979225 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* *
14979272 ATGTGATGAATGTGAACATGCATATATGAGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
14979319 ATGTGA
1 ATGTGA
14979325 AATGTGTATG
Statistics
Matches: 224, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 178 0.79
49 11 0.05
51 35 0.16
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Found at i:14979431 original size:46 final size:46
Alignment explanation
Indices: 14979295--14979431 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
14979285 GAACATGCAT
* *
14979295 ATATGAGGTAAGGCCGAATGGCTAATGTGAAATGTGTATGAGATAG
1 ATATGAGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* *
14979341 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * * *
14979387 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
14979432 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:14979650 original size:37 final size:37
Alignment explanation
Indices: 14979609--14979690 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
14979599 GATGACCATA
* *
14979609 TGTGGTGACTATATCCGGGTAAGACCCGATGACTACG
1 TGTGGAGACTATATCCGGGTAAGACCCGATAACTACG
* * * * *
14979646 TGTGGAGATTTTGTTCGGGTAAGACCCGATAACTTCG
1 TGTGGAGACTATATCCGGGTAAGACCCGATAACTACG
14979683 TGTGGAGA
1 TGTGGAGA
14979691 TTTCATCTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (37 bp):
TGTGGAGACTATATCCGGGTAAGACCCGATAACTACG
Found at i:14981237 original size:24 final size:24
Alignment explanation
Indices: 14981209--14981275 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
14981199 CTACTTAAAT
** *
14981209 CTCTCCATAAATCACTCTTTGATT
1 CTCTCCATAAATCACTCCATGATA
* *
14981233 TTCTCC-TAATATCTCTCCATGATA
1 CTCTCCATAA-ATCACTCCATGATA
*
14981257 CACTCCATAAATCACTCCA
1 CTCTCCATAAATCACTCCA
14981276 ACCTCCCATT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
23 3 0.09
24 27 0.82
25 3 0.09
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (24 bp):
CTCTCCATAAATCACTCCATGATA
Found at i:14983479 original size:24 final size:24
Alignment explanation
Indices: 14983452--14983498 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
14983442 TTCCTGACCA
14983452 CCAAATTTTTCGAATAAGCTCATG
1 CCAAATTTTTCGAATAAGCTCATG
14983476 CCAAATTTTTCGAATAAGCTCAT
1 CCAAATTTTTCGAATAAGCTCAT
14983499 CATCTTTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (24 bp):
CCAAATTTTTCGAATAAGCTCATG
Found at i:14988543 original size:144 final size:146
Alignment explanation
Indices: 14988330--14988599 Score: 368
Period size: 144 Copynumber: 1.9 Consensus size: 146
14988320 GTAAAATGTA
* * * * * *
14988330 GATGTCATGTCTCGGACATAGTTTTACACTGGCTCTCATACATCAATGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATACATCAATGCCGATGCCATGTCCCAG
*
14988395 ACATGGTCTTACATTGA-CACAT-ATAACAATACCGATGCCATGTTCCAAACATGGTCTTACATT
66 ACATGGTCTTAC-TTGAGCAC-TCATAACAATACCAATGCCATGTTCCAAACATGGTCTTACATT
14988458 GGCTCACATGTCGAGGCT
129 GGCTCACATGTCGAGGCT
* *
14988476 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-C-TCAATGCCGATGCCATGTCCTAG
1 GATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATACATCAATGCCGATGCCATGTCCCAG
* ** * *
14988539 ACATGGTCTTACTTTAGGTCTCATAACATTGCCAATGCCATGTTCCAAACATGGTCTTACA
66 ACATGGTCTTACTTGAGCACTCATAACAATACCAATGCCATGTTCCAAACATGGTCTTACA
14988600 CTTGTTCTCA
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
143 4 0.04
144 70 0.65
145 1 0.01
146 33 0.31
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (146 bp):
GATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATACATCAATGCCGATGCCATGTCCCAG
ACATGGTCTTACTTGAGCACTCATAACAATACCAATGCCATGTTCCAAACATGGTCTTACATTGG
CTCACATGTCGAGGCT
Found at i:14988609 original size:48 final size:47
Alignment explanation
Indices: 14988361--14988643 Score: 228
Period size: 48 Copynumber: 5.9 Consensus size: 47
14988351 TTTTACACTG
*
14988361 GCTCTCATACATCAATGTCGATGCCATGTCCCAGACATGGTCTTACATT
1 GCTCTCATA-A-CAATGCCGATGCCATGTCCCAGACATGGTCTTACATT
* * * *
14988410 GACACAT-ATAACAATACCGATGCCATGTTCCAAACATGGTCTTACATT
1 G-CTC-TCATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACATT
* ** * * * *
14988458 GGCTCACATGTCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTA
1 -GCTCTCATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACA-TT
** * *
14988507 GCTCTCATCTCAATGCCGATGCCATGTCCTAGACATGGTCTTACTTT
1 GCTCTCATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACATT
* * * * *
14988554 AGGTCTCATAACATTGCCAATGCCATGTTCCAAACATGGTCTTACACTT
1 -GCTCTCATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACA-TT
* * ** * *
14988603 GTTCTCATTA-TGTGGCCAATGCCACGTCCCAGACATGGTCT
1 GCTCTCATAACAAT-GCCGATGCCATGTCCCAGACATGGTCT
14988644 ATGACACCCC
Statistics
Matches: 186, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.01
48 172 0.92
49 6 0.03
50 5 0.03
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
GCTCTCATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACATT
Found at i:14988625 original size:144 final size:143
Alignment explanation
Indices: 14988335--14988643 Score: 356
Period size: 144 Copynumber: 2.1 Consensus size: 143
14988325 ATGTAGATGT
* * * * * *
14988335 CATGTCTCGGACATAGTTTTACACTGGCTCTCATACATCAATGTCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATACATCAATGCCGATGCCATGTCCCAGACATG
*
14988400 GTCTTACATTGACACATATAACAATACCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCAC
66 GTCTTACATTGACACA-ATAACAATACCAATGCCATGTTCCAAACATGGTCTTACATTGGCTCAC
**
14988465 ATGTCGAGGCTGATGC
130 ATGT--AGGCCAATGC
*
14988481 CATGTCCCAGACATGGTCTTACACTAGCTCTCAT-C-TCAATGCCGATGCCATGTCCTAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATACATCAATGCCGATGCCATGTCCCAGACATG
* * * * * *
14988544 GTCTTACTTTAGGTCTC-ATAACATTGCCAATGCCATGTTCCAAACATGGTCTTACACTTGTTCT
66 GTCTTACATT--GACACAATAACAATACCAATGCCATGTTCCAAACATGGTCTTACA-TTG-GCT
*
14988608 CATTATGT-GGCCAATGC
127 CA-CATGTAGGCCAATGC
*
14988625 CACGTCCCAGACATGGTCT
1 CATGTCCCAGACATGGTCT
14988644 ATGACACCCC
Statistics
Matches: 140, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
144 96 0.69
145 4 0.03
146 36 0.26
147 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (143 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATACATCAATGCCGATGCCATGTCCCAGACATG
GTCTTACATTGACACAATAACAATACCAATGCCATGTTCCAAACATGGTCTTACATTGGCTCACA
TGTAGGCCAATGC
Found at i:14995155 original size:43 final size:43
Alignment explanation
Indices: 14995108--14995225 Score: 209
Period size: 43 Copynumber: 2.7 Consensus size: 43
14995098 ATTAAAGCTG
14995108 CCAATGTCACAGACATGGTCTTACACGTAATCTCAATACTATT
1 CCAATGTCACAGACATGGTCTTACACGTAATCTCAATACTATT
14995151 CCAATGTCACAGACATGGTCTTACACGTAATCTCAATACTATT
1 CCAATGTCACAGACATGGTCTTACACGTAATCTCAATACTATT
* * *
14995194 CCAATGTCCCAGACATGGTCTAACATGTAATC
1 CCAATGTCACAGACATGGTCTTACACGTAATC
14995226 ACATCTTGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (43 bp):
CCAATGTCACAGACATGGTCTTACACGTAATCTCAATACTATT
Found at i:15000837 original size:71 final size:71
Alignment explanation
Indices: 15000753--15000916 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
15000743 CGATTTGTCT
15000753 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
15000818 CTTTCA
66 CTTTCA
* *
15000824 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
15000889 CTTTCA
66 CTTTCA
15000895 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
15000917 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:15000954 original size:71 final size:70
Alignment explanation
Indices: 15000753--15000950 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
15000743 CGATTTGTCT
* * * * *
15000753 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
15000818 CTTTCA
65 CTTTCA
* * * *
15000824 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
15000889 CTTTCA
65 CTTTCA
* *
15000895 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
15000951 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:15012702 original size:24 final size:24
Alignment explanation
Indices: 15012670--15012724 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
15012660 ACACCTTCAT
* *
15012670 ATACATATACACTTGAACACATAC
1 ATACATATACACATAAACACATAC
* *
15012694 ATACTTATACACATAAACACATAT
1 ATACATATACACATAAACACATAC
15012718 ATACATA
1 ATACATA
15012725 CCTTCCATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:15016679 original size:46 final size:45
Alignment explanation
Indices: 15016619--15016884 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
15016609 TTTGACATGA
* * * * * *
15016619 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
15016665 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
15016711 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
15016757 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
15016803 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
15016841 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
15016885 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:15016848 original size:38 final size:38
Alignment explanation
Indices: 15016797--15016872 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
15016787 ACATTTTATA
15016797 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
15016835 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
15016873 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:15019027 original size:11 final size:11
Alignment explanation
Indices: 15019011--15019062 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
15019001 TATACTAAAT
15019011 AAATAATAATA
1 AAATAATAATA
*
15019022 AAATAAT-ATT
1 AAATAATAATA
* *
15019032 AAATATCTCATA
1 AAATA-ATAATA
*
15019044 AAATATTAATA
1 AAATAATAATA
15019055 AAATAATA
1 AAATAATA
15019063 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:15021963 original size:46 final size:45
Alignment explanation
Indices: 15021903--15022168 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
15021893 TTTGACATGA
* * * * * *
15021903 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
15021949 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
15021995 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
15022041 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
15022087 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
15022125 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
15022169 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:15022132 original size:38 final size:38
Alignment explanation
Indices: 15022081--15022156 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
15022071 ACATTTTATA
15022081 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
15022119 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
15022157 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:15026189 original size:40 final size:40
Alignment explanation
Indices: 15026144--15026310 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
15026134 CGGAATATAA
15026144 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
15026184 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
15026224 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
15026264 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
15026303 CCGGATAT
1 CCGGATAT
15026311 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:15026294 original size:80 final size:79
Alignment explanation
Indices: 15026160--15026310 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
15026150 ATAATCACGT
*
15026160 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
15026225 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
15026240 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
15026303 CCGGATAT
64 CCGGATAT
15026311 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:15034188 original size:40 final size:40
Alignment explanation
Indices: 15034143--15034309 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
15034133 CGGAATATAA
15034143 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
15034183 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
15034223 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
15034263 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
15034302 CCGGATAT
1 CCGGATAT
15034310 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:15034293 original size:80 final size:79
Alignment explanation
Indices: 15034159--15034309 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
15034149 ATAATCACGT
*
15034159 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
15034224 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
15034239 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
15034302 CCGGATAT
64 CCGGATAT
15034310 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:15036937 original size:49 final size:49
Alignment explanation
Indices: 15036808--15037161 Score: 545
Period size: 49 Copynumber: 7.3 Consensus size: 49
15036798 CCCTTCGGGA
* *
15036808 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15036855 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15036902 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15036951 CTTATCACATATATACACACTTTCACATTCATCACCTCCGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15037000 CTTATCACATATATATACACTTTCACATTCATCACGTTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15037049 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15037098 CTTATCACATATATTTACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15037147 CGTATCACATATATA
1 CTTATCACATATATA
15037162 CATCTCATAC
Statistics
Matches: 278, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
46 1 0.00
47 47 0.17
49 230 0.83
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15046848 original size:42 final size:41
Alignment explanation
Indices: 15046735--15046902 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 41
15046725 CGAAAAGCTC
* * * * *
15046735 ATACAATGCCTATGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCC-ATGTCCCAGACATGGTCTTACACGAAATTAA
*
15046777 ATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATTAA
1 ATA-CGATGCCA-TGTCCCAGACATGGTCTTACACGAAATTAA
*
15046820 ATACGATACCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCC-ATGTCCCAGACATGGTCTTACACG-AAAT-T-AA
* * *
15046865 AT-CAATGCCAATGTCCCAGACGTAGTCTTACACGAAAT
1 ATACGATGCC-ATGTCCCAGACATGGTCTTACACGAAAT
15046903 CACATATTAG
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
42 32 0.30
43 43 0.40
44 28 0.26
45 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (41 bp):
ATACGATGCCATGTCCCAGACATGGTCTTACACGAAATTAA
Found at i:15046885 original size:86 final size:85
Alignment explanation
Indices: 15046746--15046902 Score: 219
Period size: 86 Copynumber: 1.8 Consensus size: 85
15046736 TACAATGCCT
* * * * *
15046746 ATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG-GGTCTTAC
1 ATGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGAC-GTAGTCTTAC
15046810 ACGAAATTAAATACGATACCG
65 ACGAAATTAAATACGATACCG
*
15046831 ATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCAATGCCAATGTCCCAGACGTAGTCTTA
1 ATGTCCCAGACATGGTCTTACACGT-AATC-AAATATCAATGCCAATGTCCCAGACGTAGTCTTA
15046895 CACGAAAT
64 CACGAAAT
15046903 CACATATTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
85 24 0.38
86 37 0.59
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (85 bp):
ATGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGACGTAGTCTTACA
CGAAATTAAATACGATACCG
Found at i:15047288 original size:8 final size:8
Alignment explanation
Indices: 15047275--15047303 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
15047265 TAACCCTCAT
15047275 ATTTTCAC
1 ATTTTCAC
15047283 ATTTTCAC
1 ATTTTCAC
15047291 ATTTTCAC
1 ATTTTCAC
15047299 ATTTT
1 ATTTT
15047304 AACACTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (8 bp):
ATTTTCAC
Found at i:15058516 original size:27 final size:27
Alignment explanation
Indices: 15058486--15058560 Score: 62
Period size: 27 Copynumber: 2.8 Consensus size: 27
15058476 ATATAATCGG
*
15058486 CACACAGCCCTAGGTAAATATGATTGA
1 CACACAGCCCTAGGTAAATATGATAGA
* * * * * *
15058513 CACAGAGTCATCGATAAATATGATAGG
1 CACACAGCCCTAGGTAAATATGATAGA
*
15058540 CACATAGCCACTA-GTAAATAT
1 CACACAGCC-CTAGGTAAATAT
15058561 AATTTGCACA
Statistics
Matches: 35, Mismatches: 12, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
CACACAGCCCTAGGTAAATATGATAGA
Found at i:15059119 original size:27 final size:27
Alignment explanation
Indices: 15058988--15059120 Score: 189
Period size: 27 Copynumber: 4.9 Consensus size: 27
15058978 TTTTACCCTA
*
15058988 TAAGGGTATTTCGATAATTTTACACTAC
1 TAAGGGTATTTCGATAATTTTACA-AAC
* *
15059016 -AAGGGTGTTTCGGTAATTTTACAAAC
1 TAAGGGTATTTCGATAATTTTACAAAC
*
15059042 TAAGGGTATTTCGATAATTTTACAATC
1 TAAGGGTATTTCGATAATTTTACAAAC
15059069 TAAGGGTATTTC-AGTAATTTTACAAAC
1 TAAGGGTATTTCGA-TAATTTTACAAAC
*
15059096 TAGGGGTATTTCGATAATTTTACAA
1 TAAGGGTATTTCGATAATTTTACAA
15059121 TTCGAGGGCA
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
26 3 0.03
27 90 0.96
28 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (27 bp):
TAAGGGTATTTCGATAATTTTACAAAC
Found at i:15059134 original size:54 final size:54
Alignment explanation
Indices: 15058988--15059140 Score: 218
Period size: 54 Copynumber: 2.8 Consensus size: 54
15058978 TTTTACCCTA
* * * *
15058988 TAAGGGTATTTCGATAATTTTACACTACAAGGGTGTTTCGGTAATTTTACAAAC
1 TAAGGGTATTTCGATAATTTTACAATTCAAGGGTATTTCAGTAATTTTACAAAC
15059042 TAAGGGTATTTCGATAATTTTACAA-TCTAAGGGTATTTCAGTAATTTTACAAAC
1 TAAGGGTATTTCGATAATTTTACAATTC-AAGGGTATTTCAGTAATTTTACAAAC
* * * *
15059096 TAGGGGTATTTCGATAATTTTACAATTCGAGGGCATTTCAATAAT
1 TAAGGGTATTTCGATAATTTTACAATTCAAGGGTATTTCAGTAAT
15059141 CTAAACAGTT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.01
54 86 0.97
55 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.38
Consensus pattern (54 bp):
TAAGGGTATTTCGATAATTTTACAATTCAAGGGTATTTCAGTAATTTTACAAAC
Found at i:15059134 original size:81 final size:81
Alignment explanation
Indices: 15058988--15059140 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 81
15058978 TTTTACCCTA
* * * *
15058988 TAAGGGTATTTCGATAATTTTACACTACAAGGGTGTTTCGGTAATTTTACAAACTAAGGGTATTT
1 TAAGGGTATTTCGATAATTTTACACAACAAGGGTATTTCGATAATTTTACAAACTAAGGGCATTT
*
15059053 CGATAATTTTACAATC
66 CAATAATTTTACAATC
* * *
15059069 TAAGGGTATTTC-AGTAATTTTACA-AACTAGGGGTATTTCGATAATTTTAC-AATTCGAGGGCA
1 TAAGGGTATTTCGA-TAATTTTACACAAC-AAGGGTATTTCGATAATTTTACAAACT-AAGGGCA
15059131 TTTCAATAAT
63 TTTCAATAAT
15059141 CTAAACAGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
80 6 0.10
81 55 0.90
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.38
Consensus pattern (81 bp):
TAAGGGTATTTCGATAATTTTACACAACAAGGGTATTTCGATAATTTTACAAACTAAGGGCATTT
CAATAATTTTACAATC
Found at i:15059139 original size:27 final size:26
Alignment explanation
Indices: 15058989--15059140 Score: 142
Period size: 27 Copynumber: 5.7 Consensus size: 26
15058979 TTTACCCTAT
* *
15058989 AAGGGTATTTCGATAATTTTACACTAC
1 AAGGGTATTTCAATAATTTTACAAT-C
* ** *
15059016 AAGGGTGTTTCGGTAATTTTACAAAC
1 AAGGGTATTTCAATAATTTTACAATC
*
15059042 TAAGGGTATTTCGATAATTTTACAATC
1 -AAGGGTATTTCAATAATTTTACAATC
* *
15059069 TAAGGGTATTTCAGTAATTTTACAAAC
1 -AAGGGTATTTCAATAATTTTACAATC
* *
15059096 TAGGGGTATTTCGATAATTTTACAATTC
1 -AAGGGTATTTCAATAATTTTACAA-TC
* *
15059124 GAGGGCATTTCAATAAT
1 AAGGGTATTTCAATAAT
15059141 CTAAACAGTT
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.38
Consensus pattern (26 bp):
AAGGGTATTTCAATAATTTTACAATC
Found at i:15071281 original size:40 final size:40
Alignment explanation
Indices: 15071236--15071366 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
15071226 CGGAATATAA
15071236 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
15071276 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
15071316 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
15071356 CCGGATATAAT
1 CCGGATATAAT
15071367 TTCCAGCATA
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:15071380 original size:40 final size:40
Alignment explanation
Indices: 15071236--15071402 Score: 135
Period size: 40 Copynumber: 4.2 Consensus size: 40
15071226 CGGAATATAA
* ** *
15071236 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* *
15071276 CCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * * *
15071316 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * *
15071356 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGG-TCTTAGC
15071396 CC-GATAT
1 CCGGATAT
15071403 CATTCAATTT
Statistics
Matches: 99, Mismatches: 23, Indels: 11
0.74 0.17 0.08
Matches are distributed among these distances:
39 7 0.07
40 89 0.90
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:15079294 original size:40 final size:40
Alignment explanation
Indices: 15079249--15079416 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
15079239 CGGAATATAA
15079249 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
15079289 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
15079329 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
15079369 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
15079409 CCGGATAT
1 CCGGATAT
15079417 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:15083099 original size:59 final size:59
Alignment explanation
Indices: 15082961--15083079 Score: 193
Period size: 59 Copynumber: 2.0 Consensus size: 59
15082951 TAGGATTGAC
*
15082961 ATCATCCAAAGGAATCTAACCAACAACATAATTTGCCATTCTTCAATTTCAGAAGGTAT
1 ATCATCCAAAGGAATCCAACCAACAACATAATTTGCCATTCTTCAATTTCAGAAGGTAT
* * * *
15083020 ATCATCCAAAGGAATCCAACCAACAACGTTATTTTCCATTCTTCAGTTTCAGAAGGTAT
1 ATCATCCAAAGGAATCCAACCAACAACATAATTTGCCATTCTTCAATTTCAGAAGGTAT
15083079 A
1 A
15083080 CATTCAACCT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (59 bp):
ATCATCCAAAGGAATCCAACCAACAACATAATTTGCCATTCTTCAATTTCAGAAGGTAT
Found at i:15088794 original size:27 final size:27
Alignment explanation
Indices: 15088764--15088823 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 27
15088754 ATATATATTC
*
15088764 AATTATGGTATGTTAAAATATTAGACA
1 AATTATGGTATGATAAAATATTAGACA
*
15088791 AATTAT-GTTTGATAAAATATTAGACA
1 AATTATGGTATGATAAAATATTAGACA
15088817 AATTATG
1 AATTATG
15088824 TTTGATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.45, C:0.03, G:0.13, T:0.38
Consensus pattern (27 bp):
AATTATGGTATGATAAAATATTAGACA
Found at i:15088811 original size:26 final size:26
Alignment explanation
Indices: 15088777--15088830 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
15088767 TATGGTATGT
15088777 TAAAATATTAGACAAATTATGTTTGA
1 TAAAATATTAGACAAATTATGTTTGA
15088803 TAAAATATTAGACAAATTATGTTTGA
1 TAAAATATTAGACAAATTATGTTTGA
15088829 TA
1 TA
15088831 TATTGGTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (26 bp):
TAAAATATTAGACAAATTATGTTTGA
Found at i:15090891 original size:22 final size:22
Alignment explanation
Indices: 15090866--15090912 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
15090856 AACGCTGTAG
*
15090866 ACAGGATAGAACATAGCCGTAA
1 ACAGGACAGAACATAGCCGTAA
* *
15090888 ACAGGACAGCATATAGCCGTAA
1 ACAGGACAGAACATAGCCGTAA
15090910 ACA
1 ACA
15090913 TCGCAGCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.21, G:0.21, T:0.13
Consensus pattern (22 bp):
ACAGGACAGAACATAGCCGTAA
Found at i:15090919 original size:22 final size:22
Alignment explanation
Indices: 15090878--15090920 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15090868 AGGATAGAAC
*
15090878 ATAGCCGTAAACAGGACAGCAT
1 ATAGCCGTAAACACGACAGCAT
15090900 ATAGCCGTAAACATCG-CAGCA
1 ATAGCCGTAAACA-CGACAGCA
15090921 ACACTGCCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.14
Consensus pattern (22 bp):
ATAGCCGTAAACACGACAGCAT
Found at i:15091143 original size:22 final size:22
Alignment explanation
Indices: 15091115--15091179 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
15091105 GCAAATACGT
*
15091115 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
15091137 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
15091159 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
15091180 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:15091801 original size:27 final size:27
Alignment explanation
Indices: 15091657--15092019 Score: 241
Period size: 27 Copynumber: 13.4 Consensus size: 27
15091647 TTTCACCCTA
* * * *
15091657 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * * *
15091684 CAAGGTTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
15091711 CAATGGTATTTCT-ATAATTTTTGAAAGT
1 CAAGGGTATTT-TGGTAATTTTACAAA-T
* **
15091739 CAAGGGTATTTTTTGTAATTTTGTAAAT
1 CAAGGGTA-TTTTGGTAATTTTACAAAT
* *
15091767 C-AGTGTATTTAT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
**
15091793 CAAGGGTATTTTGGTAATTTTTTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
15091820 CAACGATATTTTGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
15091847 CGAGGGTATTTCGATAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
15091874 CGAGGATATTTTGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** *
15091901 TAAGGGTATTTCAATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
15091928 C-AGTGGT-TTTTGGTAATTTTTACAAAG
1 CAAG-GGTATTTTGGTAA-TTTTACAAAT
* * *
15091955 CACGGGTATTTTGGTAATTTTTCTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
15091982 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
15092009 CAAGGGTATTT
1 CAAGGGTATTT
15092020 CAGTAATTCT
Statistics
Matches: 261, Mismatches: 64, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
26 25 0.10
27 203 0.78
28 20 0.08
29 13 0.05
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:15093547 original size:38 final size:38
Alignment explanation
Indices: 15093505--15093590 Score: 109
Period size: 38 Copynumber: 2.3 Consensus size: 38
15093495 CATGTAAAAC
*
15093505 AGTAGACATGCTAAACATGTATTCAGTTCAACAGTAAT
1 AGTAGACATGCTAAACATGTATTCAGTTCAAAAGTAAT
* * ** *
15093543 AGTAGACATGCTTAACATGTGTTTGGTTTAAAAGTAAT
1 AGTAGACATGCTAAACATGTATTCAGTTCAAAAGTAAT
*
15093581 AGTAGGCATG
1 AGTAGACATG
15093591 TTGTTCATGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (38 bp):
AGTAGACATGCTAAACATGTATTCAGTTCAAAAGTAAT
Found at i:15095996 original size:29 final size:29
Alignment explanation
Indices: 15095930--15096048 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
15095920 CACATACCTG
* * * *
15095930 TATATGGCCCACTAGACCC-AATTATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
15095958 CACATGGCCCATTAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
15095987 TATATGGCCCTTTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
15096016 TATGTGGCCCATTAAGCCCAAATCACA-T
1 TATATGGCCCATTAGGCCCAAATCACATT
15096044 TATAT
1 TATAT
15096049 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 20 0.27
29 55 0.73
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:15100076 original size:16 final size:18
Alignment explanation
Indices: 15100055--15100089 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15100045 ACTTTTGCTG
15100055 ATTTTCT-G-GTCATACT
1 ATTTTCTCGAGTCATACT
15100071 ATTTTCTCGAGTCATACT
1 ATTTTCTCGAGTCATACT
15100089 A
1 A
15100090 AGATCCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 1 0.06
18 9 0.53
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (18 bp):
ATTTTCTCGAGTCATACT
Found at i:15100601 original size:16 final size:16
Alignment explanation
Indices: 15100582--15100613 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15100572 AATTGTTTTA
15100582 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
15100598 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
15100614 ACTCTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:15100899 original size:50 final size:50
Alignment explanation
Indices: 15100824--15101195 Score: 298
Period size: 50 Copynumber: 7.6 Consensus size: 50
15100814 CTGGTACGCA
* * *
15100824 TAGTAGCTTGTACTTAGTACTACACATGCGACCTATCAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTAGTACACG
* * * * *
15100874 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCAT-TTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTAG-TACACG
* * * *
15100924 TAGTAGCCTGCACTTAGTACTATACACGTG----ATCGA---AGTTA-ATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTAG-TACACG
* * *
15100967 -GGTACGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTA-GCCTGCACTTAGTACTACACACGCGACCTATCAATCTAGTACACG
* ** * * *
15101017 TAGTAGCCTGCACTTAGTACTACACACGTGATTTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTAGTACACG
* * ** * ** ** *
15101067 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCTA-TCAATCTAGTACACG
* * * *
15101118 TAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTAGTACACG
*
15101168 TAGTAGCCTGCACTTAGTACTGCACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
15101196 TGACTCACAA
Statistics
Matches: 252, Mismatches: 56, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
42 3 0.01
43 24 0.10
44 3 0.01
46 3 0.01
47 4 0.02
49 7 0.03
50 171 0.68
51 36 0.14
52 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTAGTACACG
Found at i:15100990 original size:93 final size:93
Alignment explanation
Indices: 15100879--15101048 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
15100869 ACACGTAGTA
* * * *
15100879 GCCTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTAC
1 GCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTAC
*
15100944 TATACACGTGATCGAAGTTAATGGGTAC
66 TACACACGTGATCGAAGTTAATGGGTAC
* * *
15100972 GCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTAC
1 GCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTAC
15101037 TACACACGTGAT
66 TACACACGTGAT
15101049 TTAACCATCT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (93 bp):
GCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTAC
TACACACGTGATCGAAGTTAATGGGTAC
Found at i:15101094 original size:143 final size:145
Alignment explanation
Indices: 15100835--15101200 Score: 574
Period size: 143 Copynumber: 2.5 Consensus size: 145
15100825 AGTAGCTTGT
*
15100835 ACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 ACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
* * * *
15100900 CGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTATACACGTGATCGAAGTTAA
66 CGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
* *
15100965 TGGGTA-C-GCCTGC
131 CGGGTAGCAGCCTAC
15100978 ACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 ACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
*
15101043 CGTGATTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
66 CGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
15101108 CGGGTATGCATAGTAGCCTAC
131 CGGGTA-GC-----AGCCTAC
* *
15101129 ACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTGCACA
1 ACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
15101194 CGTGACT
66 CGTGACT
15101201 CACAACGAAT
Statistics
Matches: 204, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
143 129 0.63
145 1 0.00
151 74 0.36
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (145 bp):
ACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
CGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
CGGGTAGCAGCCTAC
Found at i:15104308 original size:56 final size:56
Alignment explanation
Indices: 15104241--15104354 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
15104231 TGATAAAAAA
15104241 TTGATAATGAGTTAGGTAAATGTTCCATGATGGGCATGATAAGCATTATGGGCATT
1 TTGATAATGAGTTAGGTAAATGTTCCATGATGGGCATGATAAGCATTATGGGCATT
15104297 TTGATAATGAGTTAGGTAAATGTTCCATGATGGGCATGATAAGCATTATGGGCATT
1 TTGATAATGAGTTAGGTAAATGTTCCATGATGGGCATGATAAGCATTATGGGCATT
15104353 TT
1 TT
15104355 TTTTTATTGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.35
Consensus pattern (56 bp):
TTGATAATGAGTTAGGTAAATGTTCCATGATGGGCATGATAAGCATTATGGGCATT
Found at i:15105995 original size:27 final size:27
Alignment explanation
Indices: 15105955--15106174 Score: 259
Period size: 27 Copynumber: 8.1 Consensus size: 27
15105945 AGGAAGCGTC
* *
15105955 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACGAATATCTGAT
15105982 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACGA-ATATCTGA-T
*
15106009 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACGAATATCTGAT
*
15106036 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACGA-ATATCTGAT
* *
15106063 CTGGTGGCTCTGCCACGATTATCTAAT
1 CTGGTGGCTCTGCCACGAATATCTGAT
* *
15106090 CTGGTGGCTCTGCCACGTATATCTGTT
1 CTGGTGGCTCTGCCACGAATATCTGAT
*
15106117 CTGGTGGCTCTGCCACGACTATCTGTAT
1 CTGGTGGCTCTGCCACGAATATCTG-AT
* * * *
15106145 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACGAATATCTGAT
15106171 CTGG
1 CTGG
15106175 CAGCCATACT
Statistics
Matches: 168, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
26 8 0.05
27 142 0.85
28 18 0.11
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACGAATATCTGAT
Found at i:15106037 original size:54 final size:54
Alignment explanation
Indices: 15105955--15106174 Score: 343
Period size: 54 Copynumber: 4.1 Consensus size: 54
15105945 AGGAAGCGTC
* * * *
15105955 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
15106009 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
15106063 CTGGTGGCTCTGCCACGATTATCTAATCTGGTGGCTCTGCCACGTATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
15106117 CTGGTGGCTCTGCCACGACTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
15106171 CTGG
1 CTGG
15106175 CAGCCATACT
Statistics
Matches: 154, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
54 137 0.89
55 17 0.11
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:15106174 original size:81 final size:80
Alignment explanation
Indices: 15105955--15106174 Score: 302
Period size: 81 Copynumber: 2.7 Consensus size: 80
15105945 AGGAAGCGTC
*
15105955 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTC
1 CTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGGCTCTGCCACAT-TATCTATTCTGGTGGCTC
15106019 TGCCACGATTATCTGAT
64 TGCCACGATTATCTGAT
*
15106036 CTGGTGGCTCTGCCACATATATCTGT-TCTGGTGGCTCTGCCACGATTATCTAATCTGGTGGCTC
1 CTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGGCTCTGCCAC-ATTATCTATTCTGGTGGCTC
*
15106100 TGCCACG-TATATCTGTT
64 TGCCACGAT-TATCTGAT
* * * *
15106117 CTGGTGGCTCTGCCACGACTATCTGTATCTGGTGACTCTGTCACATTATCTGTTCTGG
1 CTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGGCTCTGCCACATTATCTATTCTGG
15106175 CAGCCATACT
Statistics
Matches: 125, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
80 2 0.02
81 105 0.84
82 18 0.14
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTCTGCCACAATATCTGTATCTGGTGGCTCTGCCACATTATCTATTCTGGTGGCTCTG
CCACGATTATCTGAT
Found at i:15114639 original size:27 final size:27
Alignment explanation
Indices: 15114599--15114799 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
15114589 AGGAAGCGTC
*
15114599 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
15114626 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
15114653 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
15114680 CTGGTAGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
15114707 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
15114734 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * * *
15114761 TTGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
*
15114789 CTGGTGACTCT
1 CTGGTGGCTCT
15114800 ATCACATTAT
Statistics
Matches: 144, Mismatches: 29, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
27 134 0.93
28 10 0.07
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:15114681 original size:54 final size:54
Alignment explanation
Indices: 15114599--15114818 Score: 343
Period size: 54 Copynumber: 4.1 Consensus size: 54
15114589 AGGAAGCGTC
* * *
15114599 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
15114653 CTGGTGGCTCTGCCACGATTATCTGATCTGGTAGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
15114707 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * **
15114761 TTGGTGGCTCTGCCACGATTATTTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
15114815 CTGG
1 CTGG
15114819 CAGCCATGCT
Statistics
Matches: 154, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
54 137 0.89
55 17 0.11
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:15114737 original size:81 final size:80
Alignment explanation
Indices: 15114599--15114818 Score: 282
Period size: 81 Copynumber: 2.7 Consensus size: 80
15114589 AGGAAGCGTC
* * *
15114599 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCT
1 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAT-TATCTGTTCTGGTGGCTCT
15114664 GCCACGAT-TATCTGAT
65 GCCAC-ATATATCTGAT
* *
15114680 CTGGTAGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCT
1 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCAC-ATTATCTGTTCTGGTGGCTCT
*
15114745 GCCACATATATCTGTT
65 GCCACATATATCTGAT
* * * **
15114761 TTGGTGGCTCTGCCACGAT-TATTTGTATCTGGTGACTCTATCACATTATCTGTTCTGG
1 CTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGGCTCTGCCACATTATCTGTTCTGG
15114819 CAGCCATGCT
Statistics
Matches: 122, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
80 2 0.02
81 102 0.84
82 18 0.15
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (80 bp):
CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACATTATCTGTTCTGGTGGCTCTG
CCACATATATCTGAT
Found at i:15116121 original size:2 final size:2
Alignment explanation
Indices: 15116114--15116145 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15116104 GTACCTTCCC
15116114 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15116146 CGAACAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15119260 original size:16 final size:16
Alignment explanation
Indices: 15119241--15119272 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15119231 AATTGTTTTA
15119241 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
15119257 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
15119273 ACTCTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:15121126 original size:29 final size:29
Alignment explanation
Indices: 15121093--15121166 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
15121083 CCTTCGAGCT
15121093 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
15121122 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15121151 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
15121167 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:15121127 original size:58 final size:58
Alignment explanation
Indices: 15121034--15121166 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
15121024 ATACTCGATT
* * * * *
15121034 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
15121092 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
15121150 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
15121167 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:15129008 original size:29 final size:29
Alignment explanation
Indices: 15128975--15129048 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
15128965 CCTTCGAGCT
15128975 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
15129004 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15129033 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
15129049 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:15129009 original size:58 final size:58
Alignment explanation
Indices: 15128916--15129048 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
15128906 ATACTCGATT
* * * * *
15128916 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
15128974 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
15129032 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
15129049 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:15130653 original size:50 final size:50
Alignment explanation
Indices: 15130589--15130779 Score: 168
Period size: 50 Copynumber: 3.8 Consensus size: 50
15130579 GAAGTTAACG
* * *
15130589 GGTACGCATGGTAGCCTACACTTAGTACTACACATGCGACCTATCAATTT
1 GGTACGCGTAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATTT
* * * * * * * * *
15130639 GGTACACGTAGTAGCCTGCACGTAGTACTGCATACGTGACTTAACCATTT
1 GGTACGCGTAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATTT
* * ** * **
15130689 GATACGCGTAGTAGCCTACACTTAGTACTATACATGTGATCGAAGTTAA-AG
1 GGTACGCGTAGTAGCCTACACTTAGTACTACACATGTGA-CCTA-TCAATTT
* *
15130740 GGTACGCATAGTAGCCTACACTTAGTACTACACACGTGAC
1 GGTACGCGTAGTAGCCTACACTTAGTACTACACATGTGAC
15130780 TCACAATGAA
Statistics
Matches: 108, Mismatches: 31, Indels: 4
0.76 0.22 0.03
Matches are distributed among these distances:
50 70 0.65
51 37 0.34
52 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (50 bp):
GGTACGCGTAGTAGCCTACACTTAGTACTACACATGTGACCTATCAATTT
Found at i:15131149 original size:18 final size:20
Alignment explanation
Indices: 15131116--15131162 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
15131106 AAGAACAGGT
15131116 TATATCATCAAAATTA-TCACA
1 TATAT-ATC-AAATTATTCACA
15131137 TA-ATATCAAATTATTCACA
1 TATATATCAAATTATTCACA
15131156 TATATAT
1 TATATAT
15131163 ACTTACAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 6 0.25
19 10 0.42
20 6 0.25
21 2 0.08
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATATCAAATTATTCACA
Found at i:15132024 original size:40 final size:40
Alignment explanation
Indices: 15131941--15132042 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
15131931 TAGTGGCTAC
* * **
15131941 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
15131981 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
15132021 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
15132043 CTTGGTGCGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:15138354 original size:18 final size:20
Alignment explanation
Indices: 15138321--15138367 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
15138311 AAGAACAGGT
15138321 TATATCATCAAAATTA-TCACA
1 TATAT-ATC-AAATTATTCACA
15138342 TA-ATATCAAATTATTCACA
1 TATATATCAAATTATTCACA
15138361 TATATAT
1 TATATAT
15138368 ACTTACAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 6 0.25
19 10 0.42
20 6 0.25
21 2 0.08
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATATCAAATTATTCACA
Found at i:15139234 original size:40 final size:39
Alignment explanation
Indices: 15139069--15139252 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
15139059 AAATTGAATG
* * *
15139069 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * * *
15139109 ATAACCGGGTTAAGACCCGAAAGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
15139149 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
15139189 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
15139228 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
15139253 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 102 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:15146732 original size:55 final size:54
Alignment explanation
Indices: 15146478--15146732 Score: 242
Period size: 55 Copynumber: 4.8 Consensus size: 54
15146468 ATGTGGGTAC
* * *
15146478 CTTACC-ATTGCCATGACTTGTCATGGTCTTACATAGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
15146527 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * * *
15146580 CTCACCAA-TGCCATGCCTTGGCATGGTCATAAATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * * * *
15146635 CTTATCAA-TGCCTTGTCTTAACATGGTCTTACATGATGTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
15146688 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
15146733 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 28, Indels: 20
0.77 0.13 0.09
Matches are distributed among these distances:
49 40 0.24
52 4 0.02
53 42 0.25
54 12 0.07
55 65 0.39
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:15155976 original size:40 final size:40
Alignment explanation
Indices: 15155917--15156103 Score: 196
Period size: 40 Copynumber: 4.7 Consensus size: 40
15155907 CAATTGAATG
* * * *
15155917 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
15155957 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
15155997 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
15156037 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
*
15156077 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
15156104 CATGCATGTG
Statistics
Matches: 123, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 119 0.97
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:15156055 original size:80 final size:80
Alignment explanation
Indices: 15155919--15156124 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
15155909 ATTGAATGAT
* * * * * *
15155919 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
15155983 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * * *
15155999 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
15156064 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
15156079 ATCCGGGCTAAGACCCGAAGGCATTCATGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGG
15156125 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:15156122 original size:40 final size:40
Alignment explanation
Indices: 15155917--15156124 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 40
15155907 CAATTGAATG
* * ** **
15155917 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTT
* ***
15155957 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGC-TAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAT-GTGGTT
* * *
15155997 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* * * * *
15156037 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* *
15156077 CTATCCGGGCTAAGACCCGAAGGCATTCATGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
15156117 ATATCCGG
1 ATATCCGG
15156125 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
Found at i:15157849 original size:55 final size:53
Alignment explanation
Indices: 15157724--15157919 Score: 189
Period size: 55 Copynumber: 3.6 Consensus size: 53
15157714 CTTACCATTT
*
15157724 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * * * *
15157777 CCATGCCTTGGCATGGTCTTTCATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATG
* *** *
15157832 CCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TG
** * *
15157887 CCATACCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
15157920 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 36 0.31
54 8 0.07
55 68 0.59
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.36
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:15174426 original size:29 final size:29
Alignment explanation
Indices: 15174381--15174440 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
15174371 AAAGAAAACA
*
15174381 ATTTCATATCATATTCCCCAAATTTTTCT
1 ATTTCATATCATATTCCCCAAATATTTCT
* *
15174410 ATTTCATATCATCTTCCCTAAATATTTCT
1 ATTTCATATCATATTCCCCAAATATTTCT
15174439 AT
1 AT
15174441 GGAAACCCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.48
Consensus pattern (29 bp):
ATTTCATATCATATTCCCCAAATATTTCT
Found at i:15181735 original size:40 final size:39
Alignment explanation
Indices: 15181671--15181841 Score: 229
Period size: 39 Copynumber: 4.3 Consensus size: 39
15181661 ACGACTAGCT
*
15181671 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCA
* * *
15181711 CGAATGCCTTTGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
*
15181751 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
15181790 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
15181829 CGAACGCCTTCGG
1 CAAATGCCTTCGG
15181842 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 72 0.61
40 43 0.36
41 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:15181785 original size:39 final size:40
Alignment explanation
Indices: 15181671--15181894 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
15181661 ACGACTAGCT
*
15181671 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCA
* * *
15181711 CGAATGCCTTTGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
15181751 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
15181790 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
15181829 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
15181870 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
15181895 CATCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 70 0.44
40 74 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:15184926 original size:28 final size:27
Alignment explanation
Indices: 15184880--15185072 Score: 124
Period size: 28 Copynumber: 7.0 Consensus size: 27
15184870 GGCTGTTACA
*
15184880 CCCCTATTTTTTA-ATTTTTACAATTTT
1 CCCCTATTTTTCAGA-TTTTACAATTTT
* *
15184907 ACCCCTACTTTTCAGATTTTACAGTTTT
1 -CCCCTATTTTTCAGATTTTACAATTTT
* * *
15184935 CCCTTA-TTTTCAATATTTTACAGTTCTT
1 CCCCTATTTTTC-AGATTTTACAATT-TT
* * * * *
15184963 CCCCAATTTTTTAGATTTCATAATGTTG
1 CCCCTATTTTTCAGATTTTACAAT-TTT
* * * *
15184991 CCCTTATTTTTCAAATATTACAGTTTT
1 CCCCTATTTTTCAGATTTTACAATTTT
*
15185018 CCCCCT-TCTTTTTAGATTTTTACAATTTT
1 -CCCCTAT-TTTTCAGA-TTTTACAATTTT
* *
15185047 CCCCT-TTTTTTAGATTTTATAATTTT
1 CCCCTATTTTTCAGATTTTACAATTTT
15185073 AACCCAAAAT
Statistics
Matches: 129, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
26 16 0.12
27 28 0.22
28 69 0.53
29 16 0.12
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.53
Consensus pattern (27 bp):
CCCCTATTTTTCAGATTTTACAATTTT
Found at i:15185056 original size:83 final size:83
Alignment explanation
Indices: 15184915--15185069 Score: 199
Period size: 83 Copynumber: 1.9 Consensus size: 83
15184905 TTACCCCTAC
* * *
15184915 TTTTCAGATTTTACAGTTTTCCCTTATTTTCAATATTTTACAGTTCTTCCCCAATTTTTTAGATT
1 TTTTCAAATATTACAGTTTTCCCTTATTTTCAATATTTTACAATTCTTCCCCAATTTTTTAGATT
15184980 TCATAATGTTGCCCTTAT
66 TCATAATGTTGCCCTTAT
* * *
15184998 TTTTCAAATATTACAGTTTTCCCCCTTCTTTTTAGAT-TTTTACAATT-TTCCCC-TTTTTTTAG
1 TTTTCAAATATTACAGTTTT--CCCTTATTTTCA-ATATTTTACAATTCTTCCCCAATTTTTTAG
*
15185060 ATTTTATAAT
63 ATTTCATAAT
15185070 TTTAACCCAA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 35 0.56
84 6 0.10
85 19 0.31
86 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.54
Consensus pattern (83 bp):
TTTTCAAATATTACAGTTTTCCCTTATTTTCAATATTTTACAATTCTTCCCCAATTTTTTAGATT
TCATAATGTTGCCCTTAT
Found at i:15185057 original size:56 final size:55
Alignment explanation
Indices: 15184880--15185065 Score: 164
Period size: 55 Copynumber: 3.4 Consensus size: 55
15184870 GGCTGTTACA
* * * * * *
15184880 CCCCTATTTTTT-AATTTTTACAATTTTACCCCTACTTTTCAGATTTTACAGTTTT
1 CCCCT-TTTTTTCAAATTTTACAGTTTTCCCCCTTCTTTTTAGATTTTACAATTTT
* ** * * *
15184935 -CCCTTATTTTCAATATTTTACAGTTCTTCCCCAAT-TTTTTAGATTTCATAATGTT
1 CCCCTTTTTTTCAA-ATTTTACAGTT-TTCCCCCTTCTTTTTAGATTTTACAATTTT
* *
15184990 GCCCTTATTTTTCAAATATTACAGTTTTCCCCCTTCTTTTTAGATTTTTACAATTTT
1 CCCCTT-TTTTTCAAATTTTACAGTTTTCCCCCTTCTTTTTAGA-TTTTACAATTTT
*
15185047 CCCCTTTTTTT-AGATTTTA
1 CCCCTTTTTTTCAAATTTTA
15185066 TAATTTTAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
53 5 0.05
54 6 0.06
55 37 0.36
56 33 0.32
57 21 0.21
ACGTcount: A:0.22, C:0.21, G:0.05, T:0.53
Consensus pattern (55 bp):
CCCCTTTTTTTCAAATTTTACAGTTTTCCCCCTTCTTTTTAGATTTTACAATTTT
Found at i:15186265 original size:42 final size:42
Alignment explanation
Indices: 15186225--15186494 Score: 319
Period size: 42 Copynumber: 6.4 Consensus size: 42
15186215 ATGCTGCTAT
* * * * *
15186225 AGAACATGACTTTTAGCGGCACTTTACCACAAACACTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCACAAACGCTACTAA
* *
15186267 AGAACATGAACTTTAGCGGCGCTTTTCCTACAAACACTACTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCC-ACAAACGCTACTAA
* *
15186310 AGAACATAACCTTTAGCGGCGCTTTTCCTACAAACGCTTCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCC-ACAAACGCTACTAA
* * *
15186353 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAATGCCACTAT
1 AGAACATGACCTTTAGCGGCGCTTTT-CCACAAACGCTACTAA
* * *
15186396 AGAATA-GACCTTTAGCGGCGCTTTTGCCACAAACGCCACTAT
1 AGAACATGACCTTTAGCGGCGCTTTT-CCACAAACGCTACTAA
* **
15186438 AGAACA-GACCTTTAGCGGTGCTTTTCTCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTC-CACAAACGCTACTAA
15186480 AGAACATGACCTTTA
1 AGAACATGACCTTTA
15186495 AAAAAATATT
Statistics
Matches: 203, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
41 1 0.00
42 100 0.49
43 100 0.49
44 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (42 bp):
AGAACATGACCTTTAGCGGCGCTTTTCCACAAACGCTACTAA
Found at i:15186301 original size:43 final size:43
Alignment explanation
Indices: 15186225--15186494 Score: 316
Period size: 43 Copynumber: 6.3 Consensus size: 43
15186215 ATGCTGCTAT
* * * * *
15186225 AGAACATGACTTTTAGCGGCACTTTACC-ACAAACACTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCTACAAACGCTACTAA
* *
15186267 AGAACATGAACTTTAGCGGCGCTTTTCCTACAAACACTACTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCTACAAACGCTACTAA
* *
15186310 AGAACATAACCTTTAGCGGCGCTTTTCCTACAAACGCTTCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCTACAAACGCTACTAA
* * * *
15186353 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAATGCCACTAT
1 AGAACATGACCTTTAGCGGCGCTTTTCCTACAAACGCTACTAA
* * *
15186396 AGAATA-GACCTTTAGCGGCGCTTTTGCC-ACAAACGCCACTAT
1 AGAACATGACCTTTAGCGGCGCTTTT-CCTACAAACGCTACTAA
* **
15186438 AGAACA-GACCTTTAGCGGTGCTTTT-CTCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCT-ACAAACGCTACTAA
15186480 AGAACATGACCTTTA
1 AGAACATGACCTTTA
15186495 AAAAAATATT
Statistics
Matches: 202, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
40 1 0.00
42 97 0.48
43 104 0.51
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTTCCTACAAACGCTACTAA
Found at i:15186491 original size:85 final size:84
Alignment explanation
Indices: 15186225--15186494 Score: 328
Period size: 85 Copynumber: 3.2 Consensus size: 84
15186215 ATGCTGCTAT
* * * * * *
15186225 AGAACATGACTTTTAGCGGCACTTTACCACAAACACTGCTAAAGAACATGAACTTTAGCGGCGCT
1 AGAACATGACCTTTAGCGGCGCTTTTCCACAAACGCTACTAAAGAACATGACCTTTAGCGGCGCT
* *
15186290 TTTCCTACAAACACTACTAA
66 TTTCC-ACAAACGCCACTAA
* *
15186310 AGAACATAACCTTTAGCGGCGCTTTTCCTACAAACGCTTCTAAAGAACATGACCTTTAGCGGCGC
1 AGAACATGACCTTTAGCGGCGCTTTTCC-ACAAACGCTACTAAAGAACATGACCTTTAGCGGCGC
* *
15186375 TTTTCCCACAAATGCCACTAT
65 TTTT-CCACAAACGCCACTAA
* * * *
15186396 AGAATA-GACCTTTAGCGGCGCTTTTGCCACAAACGCCACTATAGAACA-GACCTTTAGCGGTGC
1 AGAACATGACCTTTAGCGGCGCTTTT-CCACAAACGCTACTAAAGAACATGACCTTTAGCGGCGC
*
15186459 TTTTCTCACAAACGCCGCTAA
65 TTTTC-CACAAACGCCACTAA
15186480 AGAACATGACCTTTA
1 AGAACATGACCTTTA
15186495 AAAAAATATT
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
83 1 0.01
84 35 0.22
85 67 0.42
86 54 0.34
87 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (84 bp):
AGAACATGACCTTTAGCGGCGCTTTTCCACAAACGCTACTAAAGAACATGACCTTTAGCGGCGCT
TTTCCACAAACGCCACTAA
Found at i:15190672 original size:115 final size:115
Alignment explanation
Indices: 15190433--15190680 Score: 261
Period size: 115 Copynumber: 2.2 Consensus size: 115
15190423 AAAGGCGCCG
* ** * * *
15190433 TTTTGATTAAAACAAAATAACAT-TTTACGATG-CTTTCCACCTAGCGCCACTAAAGCCCAACCT
1 TTTTGATTAAAACAAAATAAC-TCTTTGCGGCGTTTTTTCA-CTAGCGCCACTAAAGCCCAACAT
* **
15190496 ATTGCGACGTTTTAACAAAAACGCCAGTAAAAAATCAAATAAAACGGCGTCA
64 ATTGCGACGTTTTAACAAAAACGCCACTAAAAAATCAAATAAAACAACGTCA
* *
15190548 TTTTGATTAAAACAAAATAACTCTTTGCGGCGTTTTTTCACTAGTGCCACTAAAGCCCGACATAT
1 TTTTGATTAAAACAAAATAACTCTTTGCGGCGTTTTTTCACTAGCGCCACTAAAGCCCAACATAT
* * * * * * *
15190613 TGC-A-GCTTTTCACCAAAGATGCCACTAAGAAATCCAATAGAACAACGTCG
66 TGCGACG-TTTT-AACAAAAACGCCACTAAAAAATCAAATAAAACAACGTCA
*
15190663 TTTTTATTAAAACAAAAT
1 TTTTGATTAAAACAAAAT
15190681 GATTTTTGCA
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
113 1 0.01
114 6 0.05
115 98 0.89
116 5 0.05
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.27
Consensus pattern (115 bp):
TTTTGATTAAAACAAAATAACTCTTTGCGGCGTTTTTTCACTAGCGCCACTAAAGCCCAACATAT
TGCGACGTTTTAACAAAAACGCCACTAAAAAATCAAATAAAACAACGTCA
Found at i:15201748 original size:115 final size:114
Alignment explanation
Indices: 15201545--15201809 Score: 320
Period size: 115 Copynumber: 2.3 Consensus size: 114
15201535 AGATAAAATA
* * * * **
15201545 TTTTTTGCA-GCGTTTTTTATAAAGCGCCGCTAAAGCTCGATCTATAGCATCGTTTTTCAAAAAG
1 TTTTTTG-AGGCGTTTTTTAAAAAGCG-CGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAG
* * * *
15201609 CATCGCTAATTCCACTGAATCTCAACATAAAAC-AGCGGCATCT-TACTGAAT
64 CACCGCTAATGCCACTAAAGCTCAACATAAAACGA-CGGCAT-TGTACTGAAT
15201660 TTTTTTGAGGCGTTTTTTAAAAAGCGCTGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGC
1 TTTTTTGAGGCGTTTTTTAAAAAGCGC-GCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGC
* * *
15201725 GCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCATTGTGCTTAAT
65 ACCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCATTGTACTGAAT
* *
15201775 TTTTTTGTGGCGTTTTTCAAAAAGCAGCGCTAATG
1 TTTTTTGAGGCGTTTTTTAAAAAGC-GCGCTAATG
15201810 GTTGACCTAT
Statistics
Matches: 130, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
114 3 0.02
115 124 0.95
116 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (114 bp):
TTTTTTGAGGCGTTTTTTAAAAAGCGCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGCA
CCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCATTGTACTGAAT
Found at i:15201861 original size:41 final size:40
Alignment explanation
Indices: 15201781--15201912 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 40
15201771 TAATTTTTTT
* * * *
15201781 GTGGCGTTTTTCAAAAAGCAGCGCTAATGGTTGACCTATA
1 GTGGCGTTTTTCAAAAAGCGGCGCTAATGCTCGATCTATA
* * *
15201821 GTGGCAGTTTTTTAAAAAGCGGCACTAATTCTCGATCTATA
1 GTGGC-GTTTTTCAAAAAGCGGCGCTAATGCTCGATCTATA
* * * *
15201862 GCT-ACGTTTTTCAAAAATCGTCGCTAATGCTCAATCTATA
1 G-TGGCGTTTTTCAAAAAGCGGCGCTAATGCTCGATCTATA
*
15201902 GCGGCGTTTTT
1 GTGGCGTTTTT
15201913 TATCCAAACG
Statistics
Matches: 73, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
40 42 0.58
41 30 0.41
42 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (40 bp):
GTGGCGTTTTTCAAAAAGCGGCGCTAATGCTCGATCTATA
Found at i:15213754 original size:16 final size:17
Alignment explanation
Indices: 15213723--15213761 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
15213713 CTTGTTCAGG
*
15213723 TTCTCAGTGGCTTCCAA
1 TTCTCAGTGCCTTCCAA
15213740 TTCTC-GTGCCTTCCAA
1 TTCTCAGTGCCTTCCAA
*
15213756 TACTCA
1 TTCTCA
15213762 TCATATTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.18, C:0.33, G:0.13, T:0.36
Consensus pattern (17 bp):
TTCTCAGTGCCTTCCAA
Found at i:15216566 original size:11 final size:11
Alignment explanation
Indices: 15216550--15216583 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
15216540 AATACTGCCC
15216550 AAAACAAAAAA
1 AAAACAAAAAA
15216561 AAAACAAAAAAA
1 AAAAC-AAAAAA
15216573 AAAACAAAAAA
1 AAAACAAAAAA
15216584 TCTAAGTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:15216572 original size:12 final size:12
Alignment explanation
Indices: 15216550--15216583 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
15216540 AATACTGCCC
15216550 AAAAC-AAAAAA
1 AAAACAAAAAAA
15216561 AAAACAAAAAAA
1 AAAACAAAAAAA
15216573 AAAACAAAAAA
1 AAAACAAAAAA
15216584 TCTAAGTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAA
Done.