Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 57 of 410
Found at i:15217521 original size:3 final size:3
Alignment explanation
Indices: 15217513--15217562 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
15217503 AATTTAGTCC
15217513 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15217561 TA
1 TA
15217563 AACTACTTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:15217788 original size:3 final size:3
Alignment explanation
Indices: 15217782--15217839 Score: 107
Period size: 3 Copynumber: 19.0 Consensus size: 3
15217772 GATGATGATG
15217782 ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
15217828 ATT ATT ATT ATT
1 ATT ATT ATT ATT
15217840 TTGTTATGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 51 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:15220958 original size:15 final size:15
Alignment explanation
Indices: 15220935--15220971 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
15220925 TTAGATTATC
*
15220935 TGTTATTATTATTAA
1 TGTTGTTATTATTAA
*
15220950 TGTTGTTATTATTAT
1 TGTTGTTATTATTAA
15220965 TGTTGTT
1 TGTTGTT
15220972 GTTGTTGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.14, T:0.65
Consensus pattern (15 bp):
TGTTGTTATTATTAA
Found at i:15220978 original size:9 final size:9
Alignment explanation
Indices: 15220950--15220995 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
15220940 TTATTATTAA
*
15220950 TGTTGTTAT
1 TGTTGTTGT
* *
15220959 TATTATTGT
1 TGTTGTTGT
15220968 TGTTGTTGT
1 TGTTGTTGT
15220977 TGTTGTTGT
1 TGTTGTTGT
*
15220986 TGTTATTGT
1 TGTTGTTGT
15220995 T
1 T
15220996 ATTATATTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.09, C:0.00, G:0.24, T:0.67
Consensus pattern (9 bp):
TGTTGTTGT
Found at i:15221000 original size:9 final size:9
Alignment explanation
Indices: 15220961--15221000 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
15220951 GTTGTTATTA
15220961 TTATTGTTG
1 TTATTGTTG
*
15220970 TTGTTGTTG
1 TTATTGTTG
*
15220979 TTGTTGTTG
1 TTATTGTTG
*
15220988 TTATTGTTA
1 TTATTGTTG
15220997 TTAT
1 TTAT
15221001 ATTATTATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.68
Consensus pattern (9 bp):
TTATTGTTG
Found at i:15222308 original size:46 final size:46
Alignment explanation
Indices: 15222255--15222428 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
15222245 TTTGGGCATT
*
15222255 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* * * *
15222301 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTC
* * * *
15222348 CGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* *
15222394 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15222429 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
Found at i:15222408 original size:93 final size:93
Alignment explanation
Indices: 15222249--15222421 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
15222239 AGGATATTTG
* * * * *
15222249 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCAAACGCCCGAACTCGTTGAG
15222314 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
15222342 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCAAACGCCCGAACTCGTTGAG
15222407 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
15222422 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:15237422 original size:40 final size:39
Alignment explanation
Indices: 15237254--15237424 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
15237244 AGAAATTGAA
* *
15237254 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
15237294 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
15237334 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
15237374 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
15237414 TGATATCCGGG
1 TGATATCCGGG
15237425 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:15245442 original size:40 final size:39
Alignment explanation
Indices: 15245274--15245444 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
15245264 AGAAATTGAA
* *
15245274 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
15245314 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
15245354 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
15245394 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
15245434 TGATATCCGGG
1 TGATATCCGGG
15245445 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:15251145 original size:22 final size:22
Alignment explanation
Indices: 15251117--15251196 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
15251107 TGTGCTGATA
*
15251117 AACAGTAAGCTCTATTGAGTTG
1 AACAGTAAGCTCTATTGAGCTG
* *
15251139 AACAGTAAGCTC-ATTCAAGCTA
1 AACAGTAAGCTCTATT-GAGCTG
* *
15251161 AATCAGTAAGCTCCAATGAGCTG
1 AA-CAGTAAGCTCTATTGAGCTG
15251184 AACAGTAAGCTCT
1 AACAGTAAGCTCT
15251197 TACGAGGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
21 3 0.06
22 27 0.56
23 16 0.33
24 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:15259291 original size:36 final size:36
Alignment explanation
Indices: 15259244--15259312 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
15259234 CCGTTTGAGG
15259244 GTCTCACACGTCTGTGTTCTAACTAGACACGACAGA
1 GTCTCACACGTCTGTGTTCTAACTAGACACGACAGA
15259280 GTCTCACACGTCTGTGTTCTAACTAGACACGAC
1 GTCTCACACGTCTGTGTTCTAACTAGACACGAC
15259313 CGTGTGTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (36 bp):
GTCTCACACGTCTGTGTTCTAACTAGACACGACAGA
Found at i:15262536 original size:30 final size:30
Alignment explanation
Indices: 15262502--15262562 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
15262492 TCCTTAACTC
15262502 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
15262532 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
15262562 A
1 A
15262563 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:15262733 original size:12 final size:12
Alignment explanation
Indices: 15262716--15262741 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15262706 AAAATAGGGC
15262716 TTTAGTGGCGTT
1 TTTAGTGGCGTT
15262728 TTTAGTGGCGTT
1 TTTAGTGGCGTT
15262740 TT
1 TT
15262742 ATAAAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.31, T:0.54
Consensus pattern (12 bp):
TTTAGTGGCGTT
Found at i:15262897 original size:41 final size:41
Alignment explanation
Indices: 15262836--15263055 Score: 289
Period size: 41 Copynumber: 5.4 Consensus size: 41
15262826 GTTTTAGTAA
* * * *
15262836 AAAATGCCGCGAAAAA-CAGAGCATTAACGGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
15262876 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTTGCT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * * ** *
15262917 AAAACGCCGCTAAAAGCCAGAGCATTAGTGCCGCTTTCAGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
15262958 AAAACGCCACTAAAAACCAGAGCACTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
15262999 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGCT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
15263040 AAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
15263056 TCCCATAACC
Statistics
Matches: 153, Mismatches: 26, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 14 0.09
41 139 0.91
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:15263221 original size:14 final size:14
Alignment explanation
Indices: 15263199--15263238 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
15263189 TTAATTATCA
* *
15263199 TTATAGTTTAAGGT
1 TTATGGTTTAAGAT
15263213 TTATGGTTTAAGAT
1 TTATGGTTTAAGAT
*
15263227 ATATGGTTTAAG
1 TTATGGTTTAAG
15263239 CAGGTTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAAGAT
Found at i:15264121 original size:15 final size:15
Alignment explanation
Indices: 15264101--15264132 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15264091 TTTTATTTAG
*
15264101 AAGATAAATGTATAT
1 AAGATAAATATATAT
15264116 AAGATAAATATATAT
1 AAGATAAATATATAT
15264131 AA
1 AA
15264133 ATATTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:15264132 original size:10 final size:10
Alignment explanation
Indices: 15264119--15264164 Score: 56
Period size: 10 Copynumber: 4.3 Consensus size: 10
15264109 TGTATATAAG
15264119 ATAAATATAT
1 ATAAATATAT
15264129 ATAAATATTATT
1 ATAAATA-TA-T
*
15264141 TTAAAATATAT
1 AT-AAATATAT
15264152 ATAAATATAT
1 ATAAATATAT
15264162 ATA
1 ATA
15264165 TGAAAAGTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
10 18 0.58
11 4 0.13
12 4 0.13
13 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
ATAAATATAT
Found at i:15265746 original size:18 final size:18
Alignment explanation
Indices: 15265724--15265769 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
15265714 ATCTTAATGA
15265724 CGATGATTATGTTGATACT
1 CGATGATTATGTTGAT-CT
15265743 -GATG-TTGATGTTGATCT
1 CGATGATT-ATGTTGATCT
15265760 CGATGATTAT
1 CGATGATTAT
15265770 ACCCTTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 4 0.17
18 18 0.75
19 2 0.08
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.43
Consensus pattern (18 bp):
CGATGATTATGTTGATCT
Found at i:15267479 original size:29 final size:29
Alignment explanation
Indices: 15267447--15267519 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
15267437 CTTCGAGCTC
* *
15267447 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
15267476 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
15267505 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
15267520 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:15268736 original size:25 final size:26
Alignment explanation
Indices: 15268688--15268745 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
15268678 TTTTTTTTTT
15268688 TTTC-TTTGTTTTTCTTCATATTCTC
1 TTTCTTTTGTTTTTCTTCATATTCTC
* * *
15268713 TTTCTTTTTTTTTTTTTCAT-TTCTT
1 TTTCTTTTGTTTTTCTTCATATTCTC
15268738 TATTCTTT
1 T-TTCTTT
15268746 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTCTTTTGTTTTTCTTCATATTCTC
Found at i:15275373 original size:29 final size:29
Alignment explanation
Indices: 15275341--15275413 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
15275331 CTTCGAGCTC
* *
15275341 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
15275370 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
15275399 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
15275414 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:15276623 original size:24 final size:24
Alignment explanation
Indices: 15276582--15276637 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
15276572 TTTTTTTCCT
15276582 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
15276607 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
15276630 TATTCTTT
1 T-TTCTTT
15276638 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:15277818 original size:22 final size:23
Alignment explanation
Indices: 15277793--15277838 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
15277783 GAGCTTGGTC
15277793 CTATTT-TCCTGTTAATGGTATA
1 CTATTTCTCCTGTTAATGGTATA
*
15277815 CTATTTCTCCTGTTAATGTTATA
1 CTATTTCTCCTGTTAATGGTATA
15277838 C
1 C
15277839 CAAATTACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (23 bp):
CTATTTCTCCTGTTAATGGTATA
Found at i:15283156 original size:30 final size:30
Alignment explanation
Indices: 15283120--15283275 Score: 166
Period size: 28 Copynumber: 5.5 Consensus size: 30
15283110 GACAAGATTG
* * *
15283120 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
15283150 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
15283178 GCACTAAGTGTGCG-G-CTGAAA-T-TATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
15283204 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
15283234 GCACTAAGTGTGCGAG-CTGAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
15283262 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
15283276 GATTCACTAT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 19 0.18
27 3 0.03
28 44 0.41
29 4 0.04
30 38 0.35
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:15283210 original size:26 final size:28
Alignment explanation
Indices: 15283149--15283275 Score: 188
Period size: 28 Copynumber: 4.5 Consensus size: 28
15283139 AAAATTGTAC
* *
15283149 AGCACTAAGTGTGCGAGTTTG-ATTATAT
1 AGCACTAAGTGTGCGAG-CTGAAATATAT
15283177 AGCACTAAGTGTGCG-GCTGAAAT-TAT
1 AGCACTAAGTGTGCGAGCTGAAATATAT
15283203 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTG-AAA-TATAT
15283233 AGCACTAAGTGTGCGAGCTGAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAATATAT
15283261 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
15283276 GATTCACTAT
Statistics
Matches: 92, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
26 20 0.22
27 7 0.08
28 38 0.41
29 4 0.04
30 23 0.25
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:15283261 original size:84 final size:84
Alignment explanation
Indices: 15283120--15283276 Score: 235
Period size: 84 Copynumber: 1.9 Consensus size: 84
15283110 GACAAGATTG
* * * * * *
15283120 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGAATATATAGCACTAA
15283185 GTGTGCGGCTGAAATTATA
66 GTGTGCGGCTGAAATTATA
*
15283204 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAAATATATAGCACTA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTG-AATATATAGCACTA
15283268 AGTGTGCGG
65 AGTGTGCGG
15283277 ATTCACTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
83 2 0.03
84 63 0.97
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (84 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGAATATATAGCACTAA
GTGTGCGGCTGAAATTATA
Found at i:15283476 original size:17 final size:15
Alignment explanation
Indices: 15283445--15283479 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
15283435 TTGCAATTGT
15283445 ATGATTGTGGTGAAA
1 ATGATTGTGGTGAAA
15283460 ATGAGTTGTGTGTGAAA
1 ATGA-TTGTG-GTGAAA
15283477 ATG
1 ATG
15283480 CCTCAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 5 0.28
17 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (15 bp):
ATGATTGTGGTGAAA
Found at i:15289620 original size:30 final size:30
Alignment explanation
Indices: 15289584--15289743 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
15289574 GACAAGATTG
* * * * *
15289584 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
15289614 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
15289642 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
15289671 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
15289701 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
15289730 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
15289744 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:15289711 original size:59 final size:57
Alignment explanation
Indices: 15289584--15289743 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
15289574 GACAAGATTG
* * * * * *
15289584 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
15289642 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
15289701 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
15289744 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:15294452 original size:68 final size:70
Alignment explanation
Indices: 15294380--15294577 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
15294370 ACACCCTGTA
* * * *
15294380 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
15294442 ATAAAT
65 ATAAAT
*
15294448 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
15294513 ATAAAT
65 ATAAAT
*
15294519 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
15294578 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:15294491 original size:41 final size:41
Alignment explanation
Indices: 15294446--15294563 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
15294436 TGAAAGATAA
15294446 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
15294487 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
15294517 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
15294558 ATGTAG
1 ATGTAG
15294564 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:15294503 original size:71 final size:71
Alignment explanation
Indices: 15294414--15294577 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
15294404 GAGATGTATC
15294414 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
15294479 AGGACA
66 AGGACA
15294485 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
15294550 AGGACA
66 AGGACA
15294556 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
15294578 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:15304283 original size:24 final size:24
Alignment explanation
Indices: 15304256--15304318 Score: 101
Period size: 23 Copynumber: 2.7 Consensus size: 24
15304246 GAGAGGATGG
15304256 AGGAGTTGATAAGGGATAGGATTT
1 AGGAGTTGATAAGGGATAGGATTT
15304280 AGGAGTTGATAA-GGATAGGATTT
1 AGGAGTTGATAAGGGATAGGATTT
**
15304303 AGGAGCAGATAAGGGA
1 AGGAGTTGATAAGGGA
15304319 GGAAATCTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 21 0.58
24 15 0.42
ACGTcount: A:0.37, C:0.02, G:0.38, T:0.24
Consensus pattern (24 bp):
AGGAGTTGATAAGGGATAGGATTT
Found at i:15305709 original size:27 final size:27
Alignment explanation
Indices: 15305669--15305746 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
15305659 AGGAAGCGTC
*
15305669 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
15305696 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* * *
15305724 GTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
15305747 ATTCTGGCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
27 30 0.67
28 15 0.33
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:15316462 original size:27 final size:27
Alignment explanation
Indices: 15316432--15316496 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
15316422 GGGCAAAATA
*
15316432 GTCATTTTACCCTACAAGGGTATGTTG
1 GTCATTTTACACTACAAGGGTATGTTG
*
15316459 GTCATTTTACACTACAAGGGTATTTTG
1 GTCATTTTACACTACAAGGGTATGTTG
* *
15316486 ATAATTTTACA
1 GTCATTTTACA
15316497 AATTAAGGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTTG
Found at i:15316504 original size:27 final size:27
Alignment explanation
Indices: 15316475--15316948 Score: 471
Period size: 27 Copynumber: 17.7 Consensus size: 27
15316465 TTACACTACA
* **
15316475 AGGGTATTTTGATAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
15316502 AGGATATTTCGATAATTTTA-AAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
15316528 AGGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
15316555 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
15316582 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
15316609 AGGGTGTTTCGATAATTTTACAAATC-
1 AGGGTATTTCGATAATTTTACAAATCG
* *
15316635 ATGGGTATTTTGGTAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
** *
15316663 AGGGTATTTTAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
15316689 AGGGTATTTCGGTAATTTTACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
15316715 AGAGGTATTTCGATAATTTTACAAATCG
1 AG-GGTATTTCGATAATTTTACAAATCG
* *
15316743 -GGAGTATTTTGGTAATTTTACAAATCG
1 AGG-GTATTTCGATAATTTTACAAATCG
* * * **
15316770 AGGGTGTTTTGGTAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
15316797 AGGGTGTTTTGGTAATTTTACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
15316823 AGGGGTATTTAGGTAATTTTACAAATCA
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
15316851 AGGATATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
15316877 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
15316904 GGGGTATTTCGGTAATTTTATAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
15316931 AGGGTGTTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
15316949 CTCTTTATCA
Statistics
Matches: 385, Mismatches: 48, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
26 71 0.18
27 310 0.81
28 4 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:15316707 original size:161 final size:158
Alignment explanation
Indices: 15316473--15316948 Score: 544
Period size: 161 Copynumber: 3.0 Consensus size: 158
15316463 TTTTACACTA
* * ** * *
15316473 CAAGGGTATTTTGATAATTTTACAAATTAAGGATATTTCGATAATTTTAAAATTGAGGGTATTTC
1 CAAGGGTATTTTGGTAATTTTACAAA-TAAGGGTATTTTAATAATTTTACAATCGAGGGTATTTC
* * * * * *
15316538 GATAATTTTATAAATCGAGGGTGTTTCGGTAATTTTACAAATTGAGGGTGTTTCGATAATTTTAC
65 GGTAATTTTA-AAATCGAGGGTATTTCGATAATTTTACAAATCG-GGGTATTTCGGTAATTTTAC
15316603 AAATCGAGGGTGTTTCGATAATTTTACAAAT
128 AAATCGAGGGTGTTTCGATAATTTTACAAAT
* * *
15316634 CATGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTCACAATCGAGGGTATTTC
1 CAAGGGTATTTTGGTAATTTTACAAAT-AAGGGTATTTTAATAATTTTACAATCGAGGGTATTTC
* *
15316699 GGTAATTTTACAAAT-TAGAGGTATTTCGATAATTTTACAAATCGGGAGTATTTTGGTAATTTTA
65 GGTAATTTTA-AAATCGAG-GGTATTTCGATAATTTTACAAATCGGG-GTATTTCGGTAATTTTA
* *
15316763 CAAATCGAGGGTGTTTTGGTAATTTTACAAAT
127 CAAATCGAGGGTGTTTCGATAATTTTACAAAT
* * * * * *
15316795 TAAGGGTGTTTTGGTAATTTTACAAATTAGGGGTA-TTTAGGTAATTTTACAAATCAAGGATATT
1 CAAGGGTATTTTGGTAATTTTACAAA-TAAGGGTATTTTA-ATAATTTTAC-AATCGAGGGTATT
** * *
15316859 TTAGTAATTTCACAATCGAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCGGTAATTTTA
63 TCGGTAATTTTAAAATCGAGGGTATTTCGATAATTTTACAAATC-GGGGTATTTCGGTAATTTTA
* *
15316924 TAAATTGAGGGTGTTTC-AGTAATTT
127 CAAATCGAGGGTGTTTCGA-TAATTT
15316949 CTCTTTATCA
Statistics
Matches: 267, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
160 9 0.03
161 232 0.87
162 26 0.10
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (158 bp):
CAAGGGTATTTTGGTAATTTTACAAATAAGGGTATTTTAATAATTTTACAATCGAGGGTATTTCG
GTAATTTTAAAATCGAGGGTATTTCGATAATTTTACAAATCGGGGTATTTCGGTAATTTTACAAA
TCGAGGGTGTTTCGATAATTTTACAAAT
Found at i:15316759 original size:188 final size:187
Alignment explanation
Indices: 15316449--15316948 Score: 646
Period size: 188 Copynumber: 2.7 Consensus size: 187
15316439 TACCCTACAA
* * * * * ** *
15316449 GGGTATGTTGGTCATTTTAC-ACTACAAGGGTATTTTGATAATTTTACAAATTAAGGATATTTCG
1 GGGTATTTTGGTAATTTTACAAAT-CAAGGGTATTTTAATAATTTCAC-AATCGAGGGTATTTCG
*
15316513 ATAATTTTA-AAATTGAGGGTATTTCGATAATTTTATAAATCGAGGGTGTTTCGGTAATTTTACA
64 ATAATTTTACAAATTGA-GGTATTTCGATAATTTTATAAATCGAGGGTATTTCGGTAATTTTACA
* * *
15316577 AATTGAGGGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATCAT
128 AATCGAGGGTGTTTCGATAATTTTACAAATCAAGGGTGTTTCGATAATTTTACAAATCAG
* *
15316637 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAATAATTTCACAATCGAGGGTATTTCGGT
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAATAATTTCACAATCGAGGGTATTTCGAT
* *
15316702 AATTTTACAAATTAGAGGTATTTCGATAATTTTACAAATCG-GGAGTATTTTGGTAATTTTACAA
66 AATTTTACAAATT-GAGGTATTTCGATAATTTTATAAATCGAGG-GTATTTCGGTAATTTTACAA
* * * * * *
15316766 ATCGAGGGTGTTTTGGTAATTTTACAAATTAAGGGTGTTTTGGTAATTTTACAAATTAG
129 ATCGAGGGTGTTTCGATAATTTTACAAATCAAGGGTGTTTCGATAATTTTACAAATCAG
* * *
15316825 GGGTATTTAGGTAATTTTACAAATCAAGGATATTTTAGTAATTTCACAATCGAGGGTATTTCGAT
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAATAATTTCACAATCGAGGGTATTTCGAT
* * * * * *
15316890 AATTTTACAAATCGGGGGTATTTCGGTAATTTTATAAATTGAGGGTGTTTCAGTAATTT
66 AATTTTACAAAT-TGAGGTATTTCGATAATTTTATAAATCGAGGGTATTTCGGTAATTT
15316949 CTCTTTATCA
Statistics
Matches: 271, Mismatches: 35, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
187 23 0.08
188 242 0.89
189 6 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (187 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAATAATTTCACAATCGAGGGTATTTCGAT
AATTTTACAAATTGAGGTATTTCGATAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAAT
CGAGGGTGTTTCGATAATTTTACAAATCAAGGGTGTTTCGATAATTTTACAAATCAG
Found at i:15325027 original size:17 final size:17
Alignment explanation
Indices: 15325005--15325039 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
15324995 AGTGTAAGAG
15325005 TTAGAAAAGATTCACAA
1 TTAGAAAAGATTCACAA
15325022 TTAGAAAAGATTCACAA
1 TTAGAAAAGATTCACAA
15325039 T
1 T
15325040 GTATTTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.26
Consensus pattern (17 bp):
TTAGAAAAGATTCACAA
Found at i:15328576 original size:29 final size:29
Alignment explanation
Indices: 15328548--15328649 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
15328538 CCTCCGAGCT
** * * *
15328548 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
15328577 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15328606 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15328635 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
15328650 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:15336433 original size:29 final size:29
Alignment explanation
Indices: 15336405--15336506 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
15336395 CCTCCGAGCT
** * * *
15336405 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
15336434 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15336463 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15336492 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
15336507 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:15341012 original size:45 final size:45
Alignment explanation
Indices: 15340905--15341020 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 45
15340895 AGGAGGAAGA
* * * *
15340905 ATTGGTGGCTTCGTCCACAACTTACATGACAGTTTGTTTGCAAAT
1 ATTGGTGGCTTCTTCCACAACCTACATGACAGCTTGTCTGCAAAT
* *
15340950 -TTTGTGG-TT-TATCCACAACCTACA-GAATAGCTTGTCTGCAAAT
1 ATTGGTGGCTTCT-TCCACAACCTACATG-ACAGCTTGTCTGCAAAT
15340993 ATTGGTGGCTTCTTCCACAACCTACATG
1 ATTGGTGGCTTCTTCCACAACCTACATG
15341021 GTGGTTTATC
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
42 1 0.02
43 28 0.48
44 12 0.21
45 15 0.26
46 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (45 bp):
ATTGGTGGCTTCTTCCACAACCTACATGACAGCTTGTCTGCAAAT
Found at i:15341079 original size:68 final size:68
Alignment explanation
Indices: 15340953--15341079 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
15340943 TGCAAATTTT
** **
15340953 GTGGTTTATCCACAACCTACAGAATAGCTTGTCTGCAAATATTGGTGGCTTCTTCCACAACCTAC
1 GTGGTTTATCCACAACCTACAGAATAGCTTGTCTGCAAATATTGGTCACTTCAACCACAACCTAC
15341018 ATG
66 ATG
* *
15341021 GTGGTTTATCCACAACCTACATGGCA-A-CTTGTCTGCAAATTTTGGTCACTTCAACCACA
1 GTGGTTTATCCACAACCTACA--GAATAGCTTGTCTGCAAATATTGGTCACTTCAACCACA
15341080 TATATTTGAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
68 48 0.94
69 1 0.02
70 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (68 bp):
GTGGTTTATCCACAACCTACAGAATAGCTTGTCTGCAAATATTGGTCACTTCAACCACAACCTAC
ATG
Found at i:15343740 original size:22 final size:21
Alignment explanation
Indices: 15343696--15343740 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
15343686 CTTAAGTAGA
* * *
15343696 TGTATTTGTATTTTAGGATAT
1 TGTATTAGTATTTTAGAACAT
15343717 TGTATTAGTATTTTTAGAACAT
1 TGTATTAGTA-TTTTAGAACAT
15343739 TG
1 TG
15343741 CATCGTGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.53
Consensus pattern (21 bp):
TGTATTAGTATTTTAGAACAT
Found at i:15347842 original size:40 final size:40
Alignment explanation
Indices: 15347769--15347909 Score: 205
Period size: 40 Copynumber: 3.5 Consensus size: 40
15347759 ACCCAAGTAT
*
15347769 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTCGCACAAATGC
* *
15347808 CTTCGGGTCTTAGCCCGGATATAGTCACTGGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATGC
* *
15347848 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATGC
*
15347888 CTTCGGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
15347910 CATCCGAATA
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 11 0.12
40 81 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATGC
Found at i:15352513 original size:30 final size:33
Alignment explanation
Indices: 15352479--15352545 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
15352469 TTCTGTTTTA
15352479 ATTATTATTT-ACCTAAAACTCTTTTAAATAATT
1 ATTATTATTTAACCTAAAACTCTTTTAAATAA-T
* *
15352512 ATTATTATTTAATCTAAAACTCTTTTAAAGAAT
1 ATTATTATTTAACCTAAAACTCTTTTAAATAAT
15352545 A
1 A
15352546 ACTAAATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 12 0.39
34 19 0.61
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.46
Consensus pattern (33 bp):
ATTATTATTTAACCTAAAACTCTTTTAAATAAT
Found at i:15353530 original size:29 final size:29
Alignment explanation
Indices: 15353492--15353555 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
15353482 ACGGTCAGGT
* *
15353492 CACACACCCATGGGGCTGACCGTGTGTCA
1 CACACGCCCATGGGGCTGACCATGTGTCA
15353521 CACACGCCCATGGGGCTGACCATGTGTCA
1 CACACGCCCATGGGGCTGACCATGTGTCA
15353550 CACACG
1 CACACG
15353556 ACCTACACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.22, C:0.36, G:0.27, T:0.16
Consensus pattern (29 bp):
CACACGCCCATGGGGCTGACCATGTGTCA
Found at i:15354298 original size:292 final size:292
Alignment explanation
Indices: 15353774--15354310 Score: 1011
Period size: 292 Copynumber: 1.8 Consensus size: 292
15353764 GGCACTCCAC
* * *
15353774 ACCAATTTCATATCCAATCAACATTATTAATCTACTTTCAGTTCACACATTTAAACTATGATCAT
1 ACCAATTTCATATCCAATCAACATTATTAATCTACTCTCAATTCACACATTTAAACCATGATCAT
* *
15353839 AGCCATACCAATTTTTCATCATCCATTCATCATACTTGTATGCCATATAACACCATCCATTATCA
66 AGCCATACCAATCTGTCATCATCCATTCATCATACTTGTATGCCATATAACACCATCCATTATCA
*
15353904 TCAAGACTTTGACACATGCATGCATAAATAATTAGGTTTACAACCCAATAGTCAATATGAACCAT
131 TCAAGACTTTGACACATGCATGCATAAATAATTAGGTTTACAACCCAATAATCAATATGAACCAT
15353969 ATCTCATGGCCATATACAAAATGAATCATCAAATCATTATAAGCCAACACATTTGGCCAAATTAA
196 ATCTCATGGCCATATACAAAATGAATCATCAAATCATTATAAGCCAACACATTTGGCCAAATTAA
15354034 TATGACACATACTCAAATTAACAAGCTTACTT
261 TATGACACATACTCAAATTAACAAGCTTACTT
15354066 ACCAATTTCATATCCAATCAACATTATTAATCTACTCTCAATTCACACATTTAAACCATGATCAT
1 ACCAATTTCATATCCAATCAACATTATTAATCTACTCTCAATTCACACATTTAAACCATGATCAT
15354131 AGCCATACCAATCTGTCATCATCCATTCATCATACTTGTATGCCATATAACACCATCCATTATCA
66 AGCCATACCAATCTGTCATCATCCATTCATCATACTTGTATGCCATATAACACCATCCATTATCA
*
15354196 TCAAGACTTTGACACATGCATGCATAAATAATTAGGTTTACAACCTAATAATCAATATGAACCAT
131 TCAAGACTTTGACACATGCATGCATAAATAATTAGGTTTACAACCCAATAATCAATATGAACCAT
15354261 ATCTCATGGCCATATACAAAATGAATCATCAAATCATTATAAGCCAACAC
196 ATCTCATGGCCATATACAAAATGAATCATCAAATCATTATAAGCCAACAC
15354311 GCTTGCTAAA
Statistics
Matches: 238, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
292 238 1.00
ACGTcount: A:0.39, C:0.24, G:0.07, T:0.31
Consensus pattern (292 bp):
ACCAATTTCATATCCAATCAACATTATTAATCTACTCTCAATTCACACATTTAAACCATGATCAT
AGCCATACCAATCTGTCATCATCCATTCATCATACTTGTATGCCATATAACACCATCCATTATCA
TCAAGACTTTGACACATGCATGCATAAATAATTAGGTTTACAACCCAATAATCAATATGAACCAT
ATCTCATGGCCATATACAAAATGAATCATCAAATCATTATAAGCCAACACATTTGGCCAAATTAA
TATGACACATACTCAAATTAACAAGCTTACTT
Found at i:15354954 original size:42 final size:44
Alignment explanation
Indices: 15354851--15355060 Score: 151
Period size: 48 Copynumber: 4.7 Consensus size: 44
15354841 CAATGTCATA
*
15354851 TCCCAAATATGGTCTTACATGGGATCACATATCGATGCCGATAG
1 TCCCAAATATGGTCTTACACGGGATCACATATCGATGCCGATAG
* * *
15354895 -CCCAATTATGGTCTTACACGATG-TCTCATATCGATGCC-AT-G
1 TCCCAAATATGGTCTTACACG-GGATCACATATCGATGCCGATAG
* * ** *
15354936 TCCCAAACATGGTCTTACAAGAAATCACATATAGATGCCAATGCCATA-
1 TCCCAAATATGGTCTTACACGGGATCACATATCGATGCC---G--ATAG
* * * *
15354984 TCCCATATATGGTCTTACATGGGATCACATATCGGTGCCAATGCCATG
1 TCCCAAATATGGTCTTACACGGGATCACATATCGATGCCGAT---A-G
* * *
15355032 TCCCAGACATGGTCTTACATGGGATCACA
1 TCCCAAATATGGTCTTACACGGGATCACA
15355061 CATAACCCTA
Statistics
Matches: 130, Mismatches: 21, Indels: 26
0.73 0.12 0.15
Matches are distributed among these distances:
41 1 0.01
42 32 0.25
43 34 0.26
44 1 0.01
46 1 0.01
48 61 0.47
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
TCCCAAATATGGTCTTACACGGGATCACATATCGATGCCGATAG
Found at i:15355051 original size:48 final size:48
Alignment explanation
Indices: 15354928--15355060 Score: 185
Period size: 48 Copynumber: 2.8 Consensus size: 48
15354918 TCTCATATCG
* **
15354928 ATGCCATGTCCCAAACATGGTCTTACAAGAAATCACATATAGATGCCA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
15354976 ATGCCATATCCCATATATGGTCTTACATGGGATCACATATCGGTGCCA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATAGATGCCA
*
15355024 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
15355061 CATAACCCTA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATAGATGCCA
Found at i:15363752 original size:40 final size:39
Alignment explanation
Indices: 15363587--15363770 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
15363577 AAATTGAATG
* * *
15363587 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
15363627 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
15363667 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
15363707 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
15363746 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
15363771 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:15363795 original size:80 final size:81
Alignment explanation
Indices: 15363627--15363815 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
15363617 GCTGGAAATT
* * * *
15363627 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
15363692 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
15363708 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
15363771 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
15363787 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
15363816 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:15371853 original size:40 final size:39
Alignment explanation
Indices: 15371688--15371871 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
15371678 AAATTGAATG
* * *
15371688 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
15371728 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
15371768 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
15371808 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
15371847 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
15371872 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:15371896 original size:80 final size:81
Alignment explanation
Indices: 15371728--15371916 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
15371718 GCTGGAAATT
* * * *
15371728 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
15371793 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
15371809 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
15371872 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
15371888 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
15371917 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:15374893 original size:15 final size:15
Alignment explanation
Indices: 15374873--15374903 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15374863 AAATATGAAA
15374873 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
15374888 GATATGTTTTGTATT
1 GATATGTTTTGGATT
15374903 G
1 G
15374904 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:15377271 original size:10 final size:10
Alignment explanation
Indices: 15377256--15377280 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15377246 TATTGGGGTT
15377256 GACAGGACAA
1 GACAGGACAA
15377266 GACAGGACAA
1 GACAGGACAA
15377276 GACAG
1 GACAG
15377281 AAATGAGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.20, G:0.32, T:0.00
Consensus pattern (10 bp):
GACAGGACAA
Found at i:15377342 original size:46 final size:49
Alignment explanation
Indices: 15377275--15377394 Score: 147
Period size: 50 Copynumber: 2.5 Consensus size: 49
15377265 AGACAGGACA
* *
15377275 AGACAGAAATGAGCCATGTAAGTCCATATCA-A-ATAT-ATGGCTTTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATCATATATATAATGGCATTGG
* *
15377321 AGACAGGAATGAGCCATGTAAGCCCATATTATATATATAAATGGCATTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATCATATATAT-AATGGCATTGG
* **
15377371 AGACAGGAATAATTCATGTAAGTC
1 AGACAGGAATGAGCCATGTAAGTC
15377395 AATGTCGAAG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 28 0.45
47 1 0.02
48 4 0.06
50 29 0.47
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (49 bp):
AGACAGGAATGAGCCATGTAAGTCCATATCATATATATAATGGCATTGG
Found at i:15386311 original size:71 final size:70
Alignment explanation
Indices: 15386223--15386385 Score: 317
Period size: 71 Copynumber: 2.3 Consensus size: 70
15386213 CGATTTGTCT
15386223 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTA-ATTTAT
15386288 CTTTCA
65 CTTTCA
15386294 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTAATTTATC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTAATTTATC
15386359 TTTCA
66 TTTCA
15386364 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
15386386 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 34 0.37
71 58 0.63
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTAATTTATC
TTTCA
Found at i:15394484 original size:2 final size:2
Alignment explanation
Indices: 15394477--15394502 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15394467 GCTTCGCCAC
15394477 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
15394503 CTATTCTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15401696 original size:33 final size:32
Alignment explanation
Indices: 15401649--15401710 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
15401639 CGCTGCAATC
* *
15401649 TGGTGGCTTCGCCACATATATATATATCTGTTT
1 TGGTGGCCTAGCCACA-ATATATATATCTGTTT
* *
15401682 TGGTGGCCTAGCCACAATATCTGTATCTG
1 TGGTGGCCTAGCCACAATATATATATCTG
15401711 GTGACTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 11 0.44
33 14 0.56
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (32 bp):
TGGTGGCCTAGCCACAATATATATATCTGTTT
Found at i:15403258 original size:46 final size:46
Alignment explanation
Indices: 15403191--15403316 Score: 200
Period size: 46 Copynumber: 2.7 Consensus size: 46
15403181 AACCCGCCCC
* * *
15403191 TAAGTGAACTCGCACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
15403237 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
15403283 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
15403317 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 73 0.97
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:15403772 original size:30 final size:30
Alignment explanation
Indices: 15403738--15403798 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
15403728 CATTTAATAC
15403738 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
15403768 AAACTTTTGCATAATTTCACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
15403798 A
1 A
15403799 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:15412999 original size:42 final size:43
Alignment explanation
Indices: 15412940--15413031 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 43
15412930 ATTTACATAC
* ** * *
15412940 AAGACCATGTCTGGGACATTGGCATCG-TATCT-AATTTCGTGT
1 AAGACCATATCTGGGACAGAGGCATCGATAT-TGAATTACATGT
*
15412982 AAGACCCTATCTGGGACAGAGGCATCGATATTGAATTACATGT
1 AAGACCATATCTGGGACAGAGGCATCGATATTGAATTACATGT
15413025 AAGACCA
1 AAGACCA
15413032 CGTCAAGGAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
42 24 0.59
43 17 0.41
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
AAGACCATATCTGGGACAGAGGCATCGATATTGAATTACATGT
Found at i:15422219 original size:63 final size:63
Alignment explanation
Indices: 15422118--15422243 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
15422108 AACAACGTTA
15422118 GCCTTTCCCAAGTGATAATCAATTATAAGCTCGGAGTCTTTTAGTAATCCTAACCATCGACGT
1 GCCTTTCCCAAGTGATAATCAATTATAAGCTCGGAGTCTTTTAGTAATCCTAACCATCGACGT
*
15422181 GCCTTTCCCAAGTGATAATCAATTATAAGCTCGTAGTCTTTTAGTAATCCTAACCATCGACGT
1 GCCTTTCCCAAGTGATAATCAATTATAAGCTCGGAGTCTTTTAGTAATCCTAACCATCGACGT
15422244 TGTCTCAAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (63 bp):
GCCTTTCCCAAGTGATAATCAATTATAAGCTCGGAGTCTTTTAGTAATCCTAACCATCGACGT
Found at i:15427415 original size:24 final size:24
Alignment explanation
Indices: 15427316--15427413 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
15427306 AAAGCTGTCA
*
15427316 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
15427340 GGAGAGGATTTAGGAGGTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
15427364 GGAGAGGATTTAGGAGCTGGTAAG
1 GGAGAGGATTTAGGAGCTGATAAG
15427388 GGAGAGGATTTAGGAGCTGATCAAG
1 GGAGAGGATTTAGGAGCTGAT-AAG
15427413 G
1 G
15427414 AGCAGGAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 64 0.94
25 4 0.06
ACGTcount: A:0.33, C:0.04, G:0.43, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:15435174 original size:24 final size:24
Alignment explanation
Indices: 15435147--15435244 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
15435137 GAGGCTGTCA
15435147 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
15435171 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
15435195 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
15435219 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
15435244 G
1 G
15435245 AGCAGAGTTA
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:15435245 original size:24 final size:23
Alignment explanation
Indices: 15435146--15435255 Score: 148
Period size: 24 Copynumber: 4.6 Consensus size: 23
15435136 AGAGGCTGTC
15435146 AGGAGAAGATTTAGGAGCTGATA
1 AGGAGAAGATTTAGGAGCTGATA
*
15435169 AGGGAGAGGATTTAGGAGCTGATA
1 A-GGAGAAGATTTAGGAGCTGATA
*
15435193 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGAT-A
15435218 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
* *
15435242 AGGAGCAGAGTTAG
1 AGGAGAAGATTTAG
15435256 CCGGCCAAGG
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
23 1 0.01
24 77 0.96
25 2 0.03
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.20
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:15435401 original size:21 final size:21
Alignment explanation
Indices: 15435363--15435402 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15435353 CCTCTTCTTT
15435363 CTTTTCTCATTTTCTCTTCAA
1 CTTTTCTCATTTTCTCTTCAA
*
15435384 CTTTT-TCTTTTTCTTCTTC
1 CTTTTCTCATTTTC-TCTTC
15435403 TCCTCCATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (21 bp):
CTTTTCTCATTTTCTCTTCAA
Found at i:15438173 original size:93 final size:93
Alignment explanation
Indices: 15438061--15438231 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
15438051 GCCCATAAGT
* *
15438061 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
15438126 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
15438154 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
15438219 CGAGTTCGGATGC
66 CGAGTTCGGATGC
15438232 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:15438247 original size:46 final size:46
Alignment explanation
Indices: 15438053--15438233 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
15438043 TGTAACCCGC
* * *
15438053 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
15438099 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
15438149 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
15438192 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
15438234 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:15440292 original size:43 final size:42
Alignment explanation
Indices: 15440245--15440403 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 42
15440235 AGAACATATA
*
15440245 CAATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAACAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA-AT
* *** *
15440288 CAATGCC-ACTGTCTCAGACAG-GGTCTTACACAAAATCATATAT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCA-AAAT
* * * * * *
15440331 -GATGCCGATGTCCCAGACATGGTCTTACATGTAAAACAGAAGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AAAT
*
15440374 CGATGCCAACGTCCCAGACGTGGTCTTACA
1 CAATGCCAACGTCCCAGACGTGGTCTTACA
15440404 AAAAAAAAGA
Statistics
Matches: 89, Mismatches: 20, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 24 0.27
43 37 0.42
44 28 0.31
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAAAT
Found at i:15448303 original size:40 final size:40
Alignment explanation
Indices: 15448207--15448359 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
15448197 CGAATGGTAT
* * * *
15448207 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
15448248 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
15448288 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
15448328 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
15448360 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:15456157 original size:40 final size:40
Alignment explanation
Indices: 15456061--15456213 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
15456051 CGAATGGTAT
* * * *
15456061 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
15456102 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
15456142 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
15456182 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
15456214 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:15469053 original size:44 final size:43
Alignment explanation
Indices: 15468982--15469136 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 43
15468972 TGTTATCGTA
* *
15468982 TAAGACCACATCTGGGATGTTGGCATCA-ACTTATGATTTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCAGA-TT-TGATTTACGTG
* *
15469026 TAAGACCACGTCTGGGACGTTGACATCAGATTTGATTT-TGTG
1 TAAGACCACGTCTGGGACGTTGGCATCAGATTTGATTTACGTG
* *
15469068 TAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGA-TTACATG
1 TAAGACCAC-GTCTGGGAC-GTTGGCATC-AGATTTGATTTACGTG
* *
15469111 TAAGACCAAGTCTGGGATGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
15469137 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 10, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 37 0.39
44 27 0.29
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCAGATTTGATTTACGTG
Found at i:15469895 original size:10 final size:10
Alignment explanation
Indices: 15469855--15469897 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
15469845 TATTGAAACA
*
15469855 TATGCTTTGG
1 TATGATTTGG
15469865 TATGATTTTGG
1 TATGA-TTTGG
15469876 TATAGATTTGG
1 TAT-GATTTGG
15469887 TATGATTTGG
1 TATGATTTGG
15469897 T
1 T
15469898 TGGTGAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 12 0.40
11 16 0.53
12 2 0.07
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:15470382 original size:42 final size:42
Alignment explanation
Indices: 15470323--15470461 Score: 179
Period size: 42 Copynumber: 3.3 Consensus size: 42
15470313 CCAGCCTAGA
* * * * * *
15470323 CACACAGGCGTGTCTAAAGTCATGTGTGACATATGGCCTGTT
1 CACACGGGTGTGTCTAAAGCCGTGTGTGACACACGGCCTGTT
* * *
15470365 CACACGGGTGTGTCTAAAGCCGCGTATGACACACGACCTGTT
1 CACACGGGTGTGTCTAAAGCCGTGTGTGACACACGGCCTGTT
*
15470407 CACACGGGTGTGTCTAAAGCCGTGTGTGACACACGGCCCGTT
1 CACACGGGTGTGTCTAAAGCCGTGTGTGACACACGGCCTGTT
*
15470449 CACACTGGTGTGT
1 CACACGGGTGTGT
15470462 GGCTTGTAGA
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (42 bp):
CACACGGGTGTGTCTAAAGCCGTGTGTGACACACGGCCTGTT
Found at i:15477974 original size:16 final size:16
Alignment explanation
Indices: 15477955--15477985 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15477945 CTTCTTCACT
15477955 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
15477971 TACTTACTTACTTAA
1 TACTCACTTACTTAA
15477986 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:15477991 original size:20 final size:20
Alignment explanation
Indices: 15477952--15477991 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15477942 AAACTTCTTC
* *
15477952 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
15477972 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
15477992 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:15478306 original size:53 final size:54
Alignment explanation
Indices: 15478177--15478431 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
15478167 ACACGGGTAC
* * * *
15478177 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
15478226 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
15478279 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
15478334 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
15478387 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
15478432 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 23, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:15478368 original size:108 final size:110
Alignment explanation
Indices: 15478224--15478421 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
15478214 ATCCTTTTGA
* *
15478224 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
15478287 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
15478332 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
15478397 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
15478422 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:15483669 original size:16 final size:16
Alignment explanation
Indices: 15483650--15483680 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15483640 CTTCTTCACT
15483650 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
15483666 TACTTACTTACTTAA
1 TACTCACTTACTTAA
15483681 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:15483686 original size:20 final size:20
Alignment explanation
Indices: 15483647--15483686 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15483637 AAACTTCTTC
* *
15483647 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
15483667 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
15483687 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:15483999 original size:53 final size:54
Alignment explanation
Indices: 15483871--15484124 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
15483861 ACGCGGGTAC
* * * *
15483871 CTTACC-ATTCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
15483919 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
15483972 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
15484027 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
15484080 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
15484125 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
48 6 0.04
49 28 0.17
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 71 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:15484070 original size:108 final size:110
Alignment explanation
Indices: 15483917--15484114 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
15483907 ATCCTTTTGA
* *
15483917 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
15483980 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
15484025 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
15484090 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
15484115 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:15491217 original size:16 final size:16
Alignment explanation
Indices: 15491198--15491228 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15491188 CTTCTTCACT
15491198 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
15491214 TACTTACTTACTTAA
1 TACTCACTTACTTAA
15491229 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:15491234 original size:20 final size:20
Alignment explanation
Indices: 15491195--15491234 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15491185 AAACTTCTTC
* *
15491195 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
15491215 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
15491235 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:15491601 original size:54 final size:53
Alignment explanation
Indices: 15491420--15491672 Score: 218
Period size: 54 Copynumber: 4.8 Consensus size: 53
15491410 ACGCGGGTAC
* * * * *
15491420 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA----T-CCTTTTGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
*
15491469 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
* * *
15491522 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGG-A-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCC-TTGCCTTAT-G-AA
* * **
15491576 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
* * * * *
15491629 CCTTACCAATTGCCATGCCATGGCATGG-CTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTAGCCTT
15491673 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.21
51 2 0.01
52 10 0.06
53 39 0.23
54 59 0.35
55 23 0.14
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATGAA
Found at i:15491609 original size:107 final size:108
Alignment explanation
Indices: 15491467--15491662 Score: 290
Period size: 107 Copynumber: 1.8 Consensus size: 108
15491457 ATCCTTTTGA
* *
15491467 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
*
15491530 -TGCCATGCCTTGGCATGGTCTTACATGGACCTTTGCCTTATAGT
65 TTGCCATGCCATGGCATGG-CTTACATGGACCTTTGCCTTATAGT
* ** *
15491574 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
15491639 TGCCATGCCATGGCATGGCTTACA
66 TGCCATGCCATGGCATGGCTTACA
15491663 CGGTATCCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
106 1 0.01
107 48 0.61
108 13 0.16
109 17 0.22
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (108 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCATGGCATGGCTTACATGGACCTTTGCCTTATAGT
Found at i:15495726 original size:43 final size:42
Alignment explanation
Indices: 15495637--15495745 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
15495627 ATGATTTACG
***
15495637 TGTAAGACCACTTCTAGGACGTTGACATCATATTTGATTTTG
1 TGTAAGACCACTTCTAGGACGTTGACATCATATTTGATTAAA
*
15495679 TGTAAGACC-CTGTCTGGGACAGTTG-CATCGATATTTGATTAAA
1 TGTAAGACCACT-TCTAGGAC-GTTGACATC-ATATTTGATTAAA
* *
15495722 TGTAAGACCACATCTGGGACGTTG
1 TGTAAGACCACTTCTAGGACGTTG
15495746 GCATTGTACG
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
41 2 0.03
42 24 0.41
43 31 0.53
44 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACTTCTAGGACGTTGACATCATATTTGATTAAA
Found at i:15496507 original size:10 final size:10
Alignment explanation
Indices: 15496467--15496509 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
15496457 TATTGAAACA
*
15496467 TATGCTTTGG
1 TATGATTTGG
15496477 TATGATTTTGG
1 TATGA-TTTGG
15496488 TATAGATTTGG
1 TAT-GATTTGG
15496499 TATGATTTGG
1 TATGATTTGG
15496509 T
1 T
15496510 TGGTGAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 12 0.40
11 16 0.53
12 2 0.07
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (10 bp):
TATGATTTGG
Found at i:15499328 original size:196 final size:196
Alignment explanation
Indices: 15498968--15499358 Score: 577
Period size: 196 Copynumber: 2.0 Consensus size: 196
15498958 TTGAAACCTT
*
15498968 TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATTCATGTCAGTTTCCTTCTTGAAAACA
1 TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATCCATGTCAGTTTCCTTCTTGAAAACA
* * * * * *
15499033 GATTTGCACCTAATGGTGTTTGTACCTTTAGGTGGATCAATCAAGGTCCATACTTGATTATCATA
66 CATTTGCACCTAATGCTCTTTGTACCTTTAGGTGGATCAACCAAGGTCCATACCTAATTATCATA
* ** *
15499098 CATGGATTGCTTTCCAGGCTTCATGGCCTCCAACCATTTCTTAGAGTCCAGATCTGACATAGCCT
131 CATGGATTACTTTCCAAACTTCATGGCCTCCAACCATTTCTTAAAGTCCAGATCTGACATAGCCT
15499163 C
196 C
* * * * * *
15499164 TTGCAACTAACGTTGCTTTGTAAGTATGCACTTTGCCATCCATGTTAGTTTTCTTCTTGAAAACC
1 TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATCCATGTCAGTTTCCTTCTTGAAAACA
15499229 CATTTGCACCTAATGCTCTTTGTACCTTTAGGTGGATCAACCAAGGTCCATACCTAATTATCATA
66 CATTTGCACCTAATGCTCTTTGTACCTTTAGGTGGATCAACCAAGGTCCATACCTAATTATCATA
* * **
15499294 CATGGATTACATTT-CAAACTTGATGGCTTCCAACCATTTCTTAAAGTTTAGATCTGACATAGCC
131 CATGGATTAC-TTTCCAAACTTCATGGCCTCCAACCATTTCTTAAAGTCCAGATCTGACATAGCC
15499358 T
195 T
15499359 TTTGATAGTT
Statistics
Matches: 173, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
196 170 0.98
197 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (196 bp):
TTGCAACTAACCTTGCTTTGTAAGTACGCACTTTACCATCCATGTCAGTTTCCTTCTTGAAAACA
CATTTGCACCTAATGCTCTTTGTACCTTTAGGTGGATCAACCAAGGTCCATACCTAATTATCATA
CATGGATTACTTTCCAAACTTCATGGCCTCCAACCATTTCTTAAAGTCCAGATCTGACATAGCCT
C
Found at i:15503313 original size:52 final size:51
Alignment explanation
Indices: 15503230--15503347 Score: 129
Period size: 52 Copynumber: 2.4 Consensus size: 51
15503220 TTAAAACTTG
* * *
15503230 TTTAAATAATAAT--TTAAATTCTATTTAATTATCT-TTTATTTAAA-ACTCT
1 TTTAAATAATAATAATTAAATTATATTTAATTAT-TATTTATCTAAACA-TAT
* *
15503279 TTTGAATAATAATAATTAAATTATGTTTCAATTATTATTTATCTAAACATAT
1 TTTAAATAATAATAATTAAATTATATTT-AATTATTATTTATCTAAACATAT
15503331 TTTAAATAAT-ATAATTA
1 TTTAAATAATAATAATTA
15503348 TTATTTATCT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
49 12 0.21
51 19 0.33
52 26 0.45
53 1 0.02
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (51 bp):
TTTAAATAATAATAATTAAATTATATTTAATTATTATTTATCTAAACATAT
Found at i:15503348 original size:35 final size:35
Alignment explanation
Indices: 15503308--15503376 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
15503298 ATTATGTTTC
15503308 AATTATTATTTATCT-AAACATATTTTAAATAATAT
1 AATTATTATTTATCTAAAAC-TATTTTAAATAATAT
*
15503343 AATTATTATTTATCTAAAACTCTTTTAAATAATA
1 AATTATTATTTATCTAAAACTATTTTAAATAATA
15503377 ACTATATTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 28 0.88
36 4 0.12
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (35 bp):
AATTATTATTTATCTAAAACTATTTTAAATAATAT
Found at i:15503449 original size:94 final size:94
Alignment explanation
Indices: 15503342--15503512 Score: 315
Period size: 94 Copynumber: 1.8 Consensus size: 94
15503332 TTAAATAATA
* *
15503342 TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTATATTCTATTTCCTTATTTGATAAGGA
1 TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAGGA
15503407 ATATATCAAATCCTTTTGCTTTTGAATTT
66 ATATATCAAATCCTTTTGCTTTTGAATTT
*
15503436 TAATTATTATTTATCTAAAACTCTTTTAAATAATAATTAAATTCTATTTCCTTATCTGATAAGGA
1 TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAGGA
15503501 ATATATCAAATC
66 ATATATCAAATC
15503513 TCCTTTTTAT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.47
Consensus pattern (94 bp):
TAATTATTATTTATCTAAAACTCTTTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAGGA
ATATATCAAATCCTTTTGCTTTTGAATTT
Found at i:15508753 original size:24 final size:24
Alignment explanation
Indices: 15508723--15508770 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
15508713 GTAACTTATT
15508723 TAATTATCATTCTAGTCAATTTAA
1 TAATTATCATTCTAGTCAATTTAA
15508747 TAATTATCATTCTAGTCAATTTAA
1 TAATTATCATTCTAGTCAATTTAA
15508771 CCCAAAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (24 bp):
TAATTATCATTCTAGTCAATTTAA
Found at i:15516429 original size:46 final size:46
Alignment explanation
Indices: 15516373--15516548 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
15516363 TGTTTGGGCA
15516373 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
15516419 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* * * **
15516464 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
15516512 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15516549 GCGGATTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 1 0.01
46 63 0.57
47 26 0.24
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:15516528 original size:93 final size:93
Alignment explanation
Indices: 15516369--15516540 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
15516359 GGGATGTTTG
* * ***
15516369 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
15516434 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
15516462 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
15516527 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
15516541 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:15523138 original size:25 final size:25
Alignment explanation
Indices: 15523104--15523153 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
15523094 TAGCCTCATT
15523104 GTGTGATCTAGAAAATAATTTTAAA
1 GTGTGATCTAGAAAATAATTTTAAA
15523129 GTGTGATCTAGAAAATAATTTTAAA
1 GTGTGATCTAGAAAATAATTTTAAA
15523154 ACTTGTGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (25 bp):
GTGTGATCTAGAAAATAATTTTAAA
Found at i:15523212 original size:17 final size:17
Alignment explanation
Indices: 15523175--15523214 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
15523165 TATCAAAAGT
* * *
15523175 ATTTACTTTAAAATGTT
1 ATTTATTTTAAAATATC
15523192 ATTTATTTTAAAATATC
1 ATTTATTTTAAAATATC
15523209 ATTTAT
1 ATTTAT
15523215 CACAGAAGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTATTTTAAAATATC
Found at i:15523650 original size:33 final size:34
Alignment explanation
Indices: 15523568--15523662 Score: 147
Period size: 34 Copynumber: 2.8 Consensus size: 34
15523558 GAAAACATTT
* * *
15523568 TGGGCCTAAGCCCATATCAGTAGCAGTAGTAGTC
1 TGGGCCTTAGCCCATTTCAGTAACAGTAGTAGTC
15523602 TGGGCCTTAGCCCATTTCAGTAACAGTAGTAGTC
1 TGGGCCTTAGCCCATTTCAGTAACAGTAGTAGTC
*
15523636 TGGG-TTTAGCCCATTTCAGTAACAGTA
1 TGGGCCTTAGCCCATTTCAGTAACAGTA
15523663 ATCAGGGTAG
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 22 0.39
34 35 0.61
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTTCAGTAACAGTAGTAGTC
Found at i:15524127 original size:54 final size:54
Alignment explanation
Indices: 15524054--15524166 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
15524044 AACAAATCTG
* *
15524054 TCATTTTATGTTATAGGGGTATTACAGTCAGTTTACCCTACAG-GGGTATTTCGA
1 TCATTCTATCTTATAGGGGTATTACAGTCAGTTTACCCTA-AGAGGGTATTTCGA
* * * * * *
15524108 TCATTCTATCTTATGGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGG
1 TCATTCTATCTTATAGGGGTATTACAGTCAGTTTACCCTAAGAGGGTATTTCGA
15524162 TCATT
1 TCATT
15524167 TGATCACATA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 49 0.98
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (54 bp):
TCATTCTATCTTATAGGGGTATTACAGTCAGTTTACCCTAAGAGGGTATTTCGA
Found at i:15524167 original size:27 final size:27
Alignment explanation
Indices: 15524070--15524167 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
15524060 TATGTTATAG
* * * *
15524070 GGGTATTACAGTCAGTTTACCCTA-CA
1 GGGTATTTCGGTCATTTTACCCTATGA
* * * * *
15524096 GGGGTATTTCGATCATTCTATCTTATGG
1 -GGGTATTTCGGTCATTTTACCCTATGA
15524124 GGGTATTTCGGTCATTTTACCCTATGA
1 GGGTATTTCGGTCATTTTACCCTATGA
15524151 GGGTATTTCGGTCATTT
1 GGGTATTTCGGTCATTT
15524168 GATCACATAA
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTATGA
Found at i:15524191 original size:27 final size:27
Alignment explanation
Indices: 15524161--15524396 Score: 319
Period size: 27 Copynumber: 8.7 Consensus size: 27
15524151 GGGTATTTCG
* * *
15524161 GTCATTTGATCACATAAGTGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATT
15524188 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
* *
15524215 GTTATTTTATCACATAAGGGAAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
15524242 GTCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
* * *
15524269 TTCATTTTATCACATAAGAGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
* * *
15524296 GTCATTTTATTACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATT
*
15524323 GTTATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATT
* * **
15524350 GTCATTTTATCAGATATGGGCAAAAGC
1 GTCATTTTATCACATAAGGGCAAAATT
*
15524377 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
15524397 TTCAGGTACG
Statistics
Matches: 181, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATT
Found at i:15526855 original size:30 final size:30
Alignment explanation
Indices: 15526814--15526870 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
15526804 TTTTTGAGCA
* *
15526814 TAGGGGTAAAATGGTCATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
*
15526844 TAGGGGCAAAATGGTTATTTTACCAAA
1 TAGGGGCAAAATGGTCATTTTACCAAA
15526871 TATGGGAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:15527431 original size:81 final size:82
Alignment explanation
Indices: 15527305--15527460 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 82
15527295 ACGAGAGCTA
*
15527305 GTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACCTAAGCCAGTGTAA-AACATGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACCTAAGCCAGTGTAAGAACATGTCTGAG
15527369 ACAT-GCATCAACTACG
66 ACATGGCATCAACTACG
* * ** * *
15527385 GTGTAAGACCATGTTTGGGACATGGCATCGA-CTTGAGATGTGAGCCAGTGTAAGACCATGTCTG
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGACCTAAGCCAGTGTAAGAACATGTCTG
15527449 AGACATGGCATC
64 AGACATGGCATC
15527461 GGCACCTTAC
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
80 8 0.12
81 31 0.48
82 21 0.32
83 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (82 bp):
GTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACCTAAGCCAGTGTAAGAACATGTCTGAG
ACATGGCATCAACTACG
Found at i:15529323 original size:63 final size:63
Alignment explanation
Indices: 15529205--15529429 Score: 231
Period size: 63 Copynumber: 3.6 Consensus size: 63
15529195 AACATCCTGA
* * * *
15529205 TACACGGCCTGGGTACACGCCCATATGCCTTGGCCGTGTGGTTTTTA-ACCACAAACAGTGAGT
1 TACACGGCCTGGGCACACGCCCGTGT-CCTTGGCCGTGTGGTTTTTATACCTCAAACAGTGAGT
* ** *
15529268 TACACAGCCTGGGCACACGCTTGTGTCCTTGGTCGTGTGGTTTTTATACCTCAAACAGTGAGT
1 TACACGGCCTGGGCACACGCCCGTGTCCTTGGCCGTGTGGTTTTTATACCTCAAACAGTGAGT
* * * * * *
15529331 TACATGGCCTGGGCACATGCCCGTGTCCCTAGCCATGTGGTTTTTGTA-CTACAGAA-AGTGAGT
1 TACACGGCCTGGGCACACGCCCGTGTCCTTGGCCGTGTGGTTTTTATACCT-CA-AACAGTGAGT
* * * * *
15529394 TATACGGCCTGGGCAAATGCTCGTGTCCCTGGCCGT
1 TACACGGCCTGGGCACACGCCCGTGTCCTTGGCCGT
15529430 ATGAACCATG
Statistics
Matches: 135, Mismatches: 24, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
62 21 0.16
63 112 0.83
64 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.27, T:0.28
Consensus pattern (63 bp):
TACACGGCCTGGGCACACGCCCGTGTCCTTGGCCGTGTGGTTTTTATACCTCAAACAGTGAGT
Found at i:15530114 original size:22 final size:23
Alignment explanation
Indices: 15530089--15530140 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
15530079 AAAGGATAGA
*
15530089 AAAAGAATAAAAAAATAAAGA-G
1 AAAAGAAGAAAAAAATAAAGAGG
* *
15530111 AAAAGAAGGAAAAAATATAGAGG
1 AAAAGAAGAAAAAAATAAAGAGG
15530134 AAAAGAA
1 AAAAGAA
15530141 ATATGGAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.08
Consensus pattern (23 bp):
AAAAGAAGAAAAAAATAAAGAGG
Found at i:15530179 original size:40 final size:40
Alignment explanation
Indices: 15530133--15530212 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
15530123 AAATATAGAG
15530133 GAAAAGAAATATGGAAAAAGAACTAACGTTAATTATTAAT
1 GAAAAGAAATATGGAAAAAGAACTAACGTTAATTATTAAT
* *
15530173 GAAAAGAAATATGGGAAAAGAACTAATGTTAATTATTAAT
1 GAAAAGAAATATGGAAAAAGAACTAACGTTAATTATTAAT
15530213 TAACTTCCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.54, C:0.04, G:0.16, T:0.26
Consensus pattern (40 bp):
GAAAAGAAATATGGAAAAAGAACTAACGTTAATTATTAAT
Found at i:15536570 original size:36 final size:36
Alignment explanation
Indices: 15536530--15536599 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
15536520 GTACTGCTAT
* *
15536530 GGTTGTACGGGTTGCACAAGACGACTGTGGACCTAA
1 GGTTGCACGGGTCGCACAAGACGACTGTGGACCTAA
15536566 GGTTGCACGGGTCGCACAAGACGACTGTGGACCT
1 GGTTGCACGGGTCGCACAAGACGACTGTGGACCT
15536600 GTTGATGGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.34, T:0.20
Consensus pattern (36 bp):
GGTTGCACGGGTCGCACAAGACGACTGTGGACCTAA
Found at i:15536653 original size:26 final size:26
Alignment explanation
Indices: 15536620--15536669 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15536610 TAAATCTTAT
* * *
15536620 TACTGGTAGCTTTGTTGCGTTACTAC
1 TACTGGTAGCATTGCTGCGATACTAC
15536646 TACTGGTAGCATTGCTGCGATACT
1 TACTGGTAGCATTGCTGCGATACT
15536670 TATGGCTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (26 bp):
TACTGGTAGCATTGCTGCGATACTAC
Found at i:15536697 original size:20 final size:20
Alignment explanation
Indices: 15536671--15536717 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
15536661 TGCGATACTT
15536671 ATGGCTTTGTGCCACTATTG
1 ATGGCTTTGTGCCACTATTG
* *
15536691 GTGGCTTTGTGCCGCTATTG
1 ATGGCTTTGTGCCACTATTG
15536711 ATGGCTT
1 ATGGCTT
15536718 CGAGCTGCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.19, G:0.30, T:0.40
Consensus pattern (20 bp):
ATGGCTTTGTGCCACTATTG
Found at i:15536727 original size:20 final size:20
Alignment explanation
Indices: 15536671--15536727 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 20
15536661 TGCGATACTT
* * *
15536671 ATGGCTTTGTGCCACTATTG
1 ATGGCTTCGAGCCGCTATTG
* * *
15536691 GTGGCTTTGTGCCGCTATTG
1 ATGGCTTCGAGCCGCTATTG
*
15536711 ATGGCTTCGAGCTGCTA
1 ATGGCTTCGAGCCGCTA
15536728 CTCATGGATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.21, G:0.30, T:0.37
Consensus pattern (20 bp):
ATGGCTTCGAGCCGCTATTG
Found at i:15536781 original size:25 final size:26
Alignment explanation
Indices: 15536753--15536801 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15536743 TATATACTAA
*
15536753 TACTGGCAGC-TTGCTGCGTTATTGT
1 TACTGGCAGCTTTGCTGCGATATTGT
15536778 TACTGGCAGCTTTGCTGCGATATT
1 TACTGGCAGCTTTGCTGCGATATT
15536802 TGTGTGTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGATATTGT
Found at i:15539902 original size:26 final size:23
Alignment explanation
Indices: 15539844--15539943 Score: 69
Period size: 23 Copynumber: 4.2 Consensus size: 23
15539834 ATAATTACTC
*
15539844 AAAAATAAATAACTAAAATTAAT
1 AAAAATAAAAAACTAAAATTAAT
*
15539867 AATTAAA-AAAAATTCTAAAATCTAAT
1 AA--AAATAAAAA-ACTAAAAT-TAAT
* ***
15539893 AAAAATAAAAAAGTAGTTTTAAT
1 AAAAATAAAAAACTAAAATTAAT
**
15539916 AAAAATTCAAAACATAAAA-TAAT
1 AAAAATAAAAAAC-TAAAATTAAT
15539939 AAAAA
1 AAAAA
15539944 AATGCTTTTA
Statistics
Matches: 58, Mismatches: 13, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
23 25 0.43
24 12 0.21
25 15 0.26
26 6 0.10
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (23 bp):
AAAAATAAAAAACTAAAATTAAT
Found at i:15539953 original size:40 final size:42
Alignment explanation
Indices: 15539869--15539955 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 42
15539859 AAATTAATAA
*
15539869 TTAAAAAAAATTCTAAAATCTAATAAAAATAAAAAAGTAGTT
1 TTAAAAAAAATTCTAAAATCTAATAAAAATAAAAAAATAGTT
* *
15539911 TTAATAAAAATTC-AAAA-CATAA-AATAATAAAAAAAT-GCTT
1 TTAAAAAAAATTCTAAAATC-TAATAAAAATAAAAAAATAG-TT
15539951 TTAAA
1 TTAAA
15539956 CATCTTCATC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
39 1 0.03
40 19 0.49
41 7 0.18
42 12 0.31
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (42 bp):
TTAAAAAAAATTCTAAAATCTAATAAAAATAAAAAAATAGTT
Found at i:15551206 original size:6 final size:6
Alignment explanation
Indices: 15551188--15551281 Score: 86
Period size: 6 Copynumber: 15.3 Consensus size: 6
15551178 AAGAAAGATT
*
15551188 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
15551237 ATTAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
15551282 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
5 4 0.06
6 59 0.82
7 7 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:15551238 original size:37 final size:37
Alignment explanation
Indices: 15551197--15551281 Score: 134
Period size: 37 Copynumber: 2.3 Consensus size: 37
15551187 TATCAGAACT
*
15551197 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
15551234 AGAATTAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
*
15551271 AAAATCAGAAT
1 AGAATCAGAAT
15551282 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:15551474 original size:27 final size:28
Alignment explanation
Indices: 15551419--15551476 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
15551409 GTGACAGATT
*
15551419 CACCAGATACAGATATTTGTGGCATAGC
1 CACCAGATACAGATATATGTGGCATAGC
15551447 CACCAGA-ATCAGATA-ATGTGGCATAGC
1 CACCAGATA-CAGATATATGTGGCATAGC
15551474 CAC
1 CAC
15551477 TTAACATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (28 bp):
CACCAGATACAGATATATGTGGCATAGC
Found at i:15552089 original size:27 final size:27
Alignment explanation
Indices: 15552059--15552282 Score: 250
Period size: 27 Copynumber: 8.3 Consensus size: 27
15552049 ACCCCACGAA
* * *
15552059 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* * * * *
15552086 GGTATTTTAATATTTCTACCATACAAG
1 GGTATTTCAGTAATTCTACCTTACAGG
** * *
15552113 GGTATTTTGGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* * *
15552140 GGTATTTTAATAATTCTACCTTATAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* *
15552167 GGTATTTCGGTAATTCTACCTTACAAG
1 GGTATTTCAGTAATTCTACCTTACAGG
* * *
15552194 GGTATTTCAATAATTGTACCTTATAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* *
15552221 GGTGTTTCAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
15552248 GGTATTTCAGTAATTCTACCTTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
15552275 GGTATTTC
1 GGTATTTC
15552283 GATAATTTTG
Statistics
Matches: 164, Mismatches: 33, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCTTACAGG
Found at i:15552126 original size:54 final size:54
Alignment explanation
Indices: 15552059--15552289 Score: 309
Period size: 54 Copynumber: 4.3 Consensus size: 54
15552049 ACCCCACGAA
* * * * *
15552059 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAATATTTCTACCATACAAG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGG
* * * *
15552113 GGTATTTTGGTAATTCTACCCTATAGGGGTATTTTAATAATTCTACCTTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGG
* * * *
15552167 GGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAATAATTGTACCTTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGG
* * *
15552221 GGTGTTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGG
*
15552275 GGTATTTCGATAATT
1 GGTATTTCGGTAATT
15552290 TTGTAAATCG
Statistics
Matches: 154, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 154 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGG
Done.