Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 58 of 410
Found at i:15552184 original size:81 final size:81
Alignment explanation
Indices: 15552069--15552289 Score: 289
Period size: 81 Copynumber: 2.7 Consensus size: 81
15552059 GGTATCTCGG
* * * * ***
15552069 TAATTCTACCCTACAGGGGTATTTTAATATTTCTACCATACAAGGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAATAATTCTACCC
*
15552134 TATAGGGGTATTTTAA
66 TATAGGGGTATTTCAA
* * * * *
15552150 TAATTCTACCTTATAGGGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAATAATTGTACCT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAATAATTCTACCC
* *
15552215 TATAGGGGTGTTTCAG
66 TATAGGGGTATTTCAA
* *
15552231 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGATAATT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAATAATT
15552290 TTGTAAATCG
Statistics
Matches: 120, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 120 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAATAATTCTACCC
TATAGGGGTATTTCAA
Found at i:15552304 original size:27 final size:27
Alignment explanation
Indices: 15552274--15552614 Score: 298
Period size: 27 Copynumber: 12.6 Consensus size: 27
15552264 TACCTTACAG
* * **
15552274 GGGTATTTCGATAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*** **
15552301 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
15552328 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
** *
15552355 GGGTATTTCAGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
** *
15552382 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTTGGTAATTTTACAAATC-GA
* *
15552409 GGGTATTTCGGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
15552435 GGGGCATTTTGGTAATTTTACAAA-CTAA
1 -GGGTATTTTGGTAATTTTACAAATC-GA
** * *
15552463 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
15552490 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
15552516 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTACAAATCGA
** * *
15552543 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
15552571 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
15552597 GGGGTATTTTGGTAATTT
1 -GGGTATTTTGGTAATTT
15552615 GGTAAACTAA
Statistics
Matches: 268, Mismatches: 37, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.02
27 257 0.96
28 5 0.02
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:15552621 original size:27 final size:27
Alignment explanation
Indices: 15552328--15552614 Score: 310
Period size: 27 Copynumber: 10.6 Consensus size: 27
15552318 TGTAAATCGA
* **
15552328 GGGTACTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** **
15552354 AGGGTATTTCAGTAATTTTACAAA-TTG
1 -GGGTATTTTGGTAATTTTACAAACCAG
** * *
15552381 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
15552408 AGGGTATTTCGGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
15552436 GGGCATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
15552463 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
15552490 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
15552517 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
15552544 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
15552571 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
15552598 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
15552615 GGTAAACTAA
Statistics
Matches: 226, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 224 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:15556520 original size:40 final size:40
Alignment explanation
Indices: 15556475--15556658 Score: 298
Period size: 40 Copynumber: 4.6 Consensus size: 40
15556465 TAACTTGCAC
* * *
15556475 AAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTAGCAT
* *
15556515 GAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
*
15556555 AAATGCCTTTGGGACTTAGCCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
15556595 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
15556635 AAATGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGG
15556659 GAATCATTCA
Statistics
Matches: 136, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 135 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
Found at i:15556559 original size:80 final size:80
Alignment explanation
Indices: 15556402--15556658 Score: 304
Period size: 80 Copynumber: 3.2 Consensus size: 80
15556392 AACCAAGTCT
* * * * * * * * **
15556402 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCTGGAGT-TGG
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-TATAA
* * *
15556465 TAACTTGCACAAATGC
65 TCACTAGCATAAATGC
* * * *
15556481 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
15556545 TCACTAGCATAAATGC
65 TCACTAGCATAAATGC
* *
15556561 CTTTGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
15556626 CACTAGCATAAATGC
66 CACTAGCATAAATGC
15556641 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
15556659 GAATCATTCA
Statistics
Matches: 153, Mismatches: 21, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
79 12 0.08
80 140 0.92
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
CACTAGCATAAATGC
Found at i:15564706 original size:40 final size:40
Alignment explanation
Indices: 15564648--15564902 Score: 302
Period size: 40 Copynumber: 6.5 Consensus size: 40
15564638 AACCGAGTCT
* * * * *
15564648 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * ** * *
15564687 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
15564727 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* *
15564767 CTTC--GTCTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
15564805 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
15564845 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
15564885 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
15564903 GTATCATTCA
Statistics
Matches: 188, Mismatches: 23, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
38 33 0.18
39 10 0.05
40 145 0.77
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:15564884 original size:118 final size:117
Alignment explanation
Indices: 15564657--15564889 Score: 297
Period size: 118 Copynumber: 2.0 Consensus size: 117
15564647 TCTTCGGAAT
* * * ** *
15564657 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACA
1 TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACA
* * *
15564722 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGTC
66 AATGCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGTC
* * * * * *
15564774 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
1 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC
*
15564839 AAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCG
65 AAATGCCTTCGGGACTTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCG
15564890 GGACTTAGCC
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
117 4 0.04
118 93 0.95
119 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (117 bp):
TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCACA
AATGCCTTCGGGACTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGTC
Found at i:15571693 original size:39 final size:38
Alignment explanation
Indices: 15571650--15571788 Score: 152
Period size: 39 Copynumber: 3.6 Consensus size: 38
15571640 GGATATAACG
* * *
15571650 ACTCGCTCGAATGCCTTCAGGACAAAGCCTGGTATAGTA
1 ACTCGCACGAATGCCTTC-GGACTAAGCCTGGTTTAGTA
* *
15571689 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTC-GGAC-TAAGCCTGGTTTAGTA
* * * *
15571729 ACTCGCACAAATGCCTTCGGGCTTAGCCTGGATTTATTA
1 ACTCGCACGAATGCCTTCGGACTAAGCCTGG-TTTAGTA
*
15571768 ACTCGCATGAATGCCTTCGGA
1 ACTCGCACGAATGCCTTCGGA
15571789 TCTTAGTCCG
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
38 6 0.07
39 48 0.58
40 29 0.35
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (38 bp):
ACTCGCACGAATGCCTTCGGACTAAGCCTGGTTTAGTA
Found at i:15571734 original size:40 final size:40
Alignment explanation
Indices: 15571650--15571840 Score: 183
Period size: 40 Copynumber: 4.8 Consensus size: 40
15571640 GGATATAACG
* * ** *
15571650 ACTCGCTCGAATGCCTTCAGGACAAAGCCTGG-TATAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
15571689 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
15571729 ACTCGCACAAATGCCTTCGGG-CTTAGCCTGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
15571768 ACTCGCATGAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAGCCCGGATATAGTA
* *
15571808 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGGA
15571841 CATCATTCAA
Statistics
Matches: 124, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
38 2 0.02
39 56 0.45
40 59 0.48
41 7 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:15571770 original size:79 final size:80
Alignment explanation
Indices: 15571687--15571836 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 80
15571677 CCTGGTATAG
* * *
15571687 TAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAAC-TCGCACAAATGCCTTCGGG
1 TAACTCGCACGAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGG
15571750 -CTTAGCCTGGATTTAT
64 ACTTAGCCTGGATTTAT
* ** *
15571766 TAACTCGCATGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGAC
1 TAACTCGCACGAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGAC
15571831 TTAGCC
66 TTAGCC
15571837 CGGACATCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
78 3 0.05
79 43 0.70
80 15 0.25
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
TAACTCGCACGAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGAC
TTAGCCTGGATTTAT
Found at i:15576078 original size:28 final size:28
Alignment explanation
Indices: 15576019--15576083 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
15576009 TAACTATTGA
15576019 TCATTTGGGTTGAATACATACATTATGG
1 TCATTTGGGTTGAATACATACATTATGG
* * *
15576047 TCATCTGGGTTGAATACATACATTCTGT
1 TCATTTGGGTTGAATACATACATTATGG
15576075 TCATTTGGG
1 TCATTTGGG
15576084 CTAAACCTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.40
Consensus pattern (28 bp):
TCATTTGGGTTGAATACATACATTATGG
Found at i:15577503 original size:28 final size:28
Alignment explanation
Indices: 15577450--15577534 Score: 102
Period size: 28 Copynumber: 3.1 Consensus size: 28
15577440 CATAAATGAT
*
15577450 TACGAATGTGAATCTT--GCACTAAGTG
1 TACGAATGTGAATATTGAGCACTAAGTG
**
15577476 TACGAATGTGTTTATTGAGCACTAAGTG
1 TACGAATGTGAATATTGAGCACTAAGTG
* * *
15577504 TGCGAGTTTGAATATTGAGCACTAAGTG
1 TACGAATGTGAATATTGAGCACTAAGTG
15577532 TAC
1 TAC
15577535 AAACTATATA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
26 13 0.27
28 35 0.73
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (28 bp):
TACGAATGTGAATATTGAGCACTAAGTG
Found at i:15580808 original size:27 final size:27
Alignment explanation
Indices: 15580778--15581138 Score: 481
Period size: 27 Copynumber: 13.4 Consensus size: 27
15580768 CCCCAAAATA
*
15580778 GGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
15580805 GGTAAAATAACCGTAATGCCCCTGCAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
15580832 GGTAAAATGACTGCAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
15580859 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
15580886 GGTAAAATGACCGTAATGCCCTTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
15580913 GGTAAAATGACCATAATACCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
15580940 GGTAAAATGACCATAATGCCTCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
15580967 GGTAAAATAACAGTAA-ACCCCATGTAG
1 GGTAAAATGACCGTAATGCCCC-TGTAG
*
15580994 GGTAAAATGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
15581021 GGTAAAATAACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
15581048 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
15581075 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * *
15581102 GGTAAAATGAACGTAATACCCTTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
15581129 GGTAAAATGA
1 GGTAAAATGA
15581139 TGATTATCCC
Statistics
Matches: 295, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 3 0.01
27 289 0.98
28 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:15583045 original size:42 final size:42
Alignment explanation
Indices: 15582988--15583147 Score: 185
Period size: 42 Copynumber: 3.8 Consensus size: 42
15582978 TAGGGTTATG
15582988 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
* * * *
15583030 TGTGATTTCGTGTAAGACCATGTTTGGGACATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
* ** * * *
15583072 TGAGACATCGTGTAAGACCATAACTGGGCTATCAGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGA-CATCGATA
** * *
15583115 TGTGATCCCATGTAAGACCATATCTAGGATATG
1 TGTGATTTCGTGTAAGACCATATCTGGGATATG
15583148 GCATTGGCAT
Statistics
Matches: 94, Mismatches: 23, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 62 0.66
43 32 0.34
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:15583149 original size:85 final size:84
Alignment explanation
Indices: 15582995--15583151 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 84
15582985 ATGTGTGATT
* * ** * * * *
15582995 TCGTGTAAGACCATATCTGGGATATGACATCGATATGTGATTTCGTGTAAGACCATGTTTGGGAC
1 TCGTGTAAGACCATAACTGGGATATCACATCGATATGTGATCCCATGTAAGACCATATCTAGGAC
15583060 ATGGCATCGATATGAGACA
66 ATGGCATCGATATGAGACA
*
15583079 TCGTGTAAGACCATAACTGGGCTATCAGCATCGATATGTGATCCCATGTAAGACCATATCTAGGA
1 TCGTGTAAGACCATAACTGGGATATCA-CATCGATATGTGATCCCATGTAAGACCATATCTAGGA
*
15583144 TATGGCAT
65 CATGGCAT
15583152 TGGCATCTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 24 0.39
85 38 0.61
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCATAACTGGGATATCACATCGATATGTGATCCCATGTAAGACCATATCTAGGAC
ATGGCATCGATATGAGACA
Found at i:15588550 original size:90 final size:92
Alignment explanation
Indices: 15588383--15588608 Score: 234
Period size: 90 Copynumber: 2.4 Consensus size: 92
15588373 CATAGGGTAT
* ** *
15588383 AATACTGATGCCATGTCCCTGACATGGTCTTACACTGGCTCTCACATATC-C-ATG-TCGATGCA
1 AATACCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-T-A-AT-TCTCGAGGCT-GATGCA
*
15588445 TGTCCCAAACATGTCTTACATTAGCACATC-TC
61 TGTCCCAAACATGTCTTACACTAGCAC-TCGTC
15588477 -ATAGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTAATTCTCGAGGCTGATGCATGTC
1 AATA-CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTAATTCTCGAGGCTGATGCATGTC
*
15588539 CCAGAA-ATGTCTTACACTAGCTCTCGTC
65 CCA-AACATGTCTTACACTAGCACTCGTC
* *
15588567 TAAATACCGATGCCATGTCCCAGATATGGTCTTACACTGGCT
1 --AATACCGATGCCATGTCCCAAACATGGTCTTACACTGGCT
15588609 ATCATAATGT
Statistics
Matches: 113, Mismatches: 8, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
88 2 0.02
89 5 0.04
90 33 0.29
91 4 0.04
92 20 0.18
93 30 0.27
94 19 0.17
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (92 bp):
AATACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTAATTCTCGAGGCTGATGCATGTCC
CAAACATGTCTTACACTAGCACTCGTC
Found at i:15588631 original size:94 final size:92
Alignment explanation
Indices: 15588383--15588656 Score: 256
Period size: 94 Copynumber: 3.0 Consensus size: 92
15588373 CATAGGGTAT
* * * * *
15588383 AATACTGATGCCATGTCCCTGACATGGTCTTACACTGGCTCTCACATATCCAT-GTCGATGCATG
1 AATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATA-AT-CGTGGCCGATGCATG
*
15588447 TCCCA-AACATGTCTTACATTAGCACATCTC
63 TCCCAGAA-ATGTCTTACACTAGCACATCTC
* * ** * *
15588477 -ATAGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTAATTCTCGAGGCTGATGCATGTC
1 AATA-CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATAATCGTGGCCGATGCATGTC
*
15588539 CCAGAAATGTCTTACACTAGCTC-TCGTC
65 CCAGAAATGTCTTACACTAGCACATC-TC
*
15588567 TAAATACCGATGCCATGTCCCAGATATGGTCTTACACTGGCTATCATAAT-GTGGCCGATGCATG
1 --AATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATAATCGTGGCCGATGCATG
** * *
15588631 TCTTAGACATGTCTTACGCTAGCACA
63 TCCCAGAAATGTCTTACACTAGCACA
15588657 CACACATTGC
Statistics
Matches: 144, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
89 3 0.02
90 32 0.22
91 4 0.03
92 20 0.14
93 30 0.21
94 51 0.35
95 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (92 bp):
AATACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATAATCGTGGCCGATGCATGTCC
CAGAAATGTCTTACACTAGCACATCTC
Found at i:15591102 original size:5 final size:5
Alignment explanation
Indices: 15591092--15591116 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15591082 TCTTGCTTTG
15591092 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
15591117 CGAAAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:15593516 original size:131 final size:130
Alignment explanation
Indices: 15593381--15593620 Score: 293
Period size: 130 Copynumber: 1.8 Consensus size: 130
15593371 CCACGGCTAT
* * * *
15593381 TAAAAATCCCTT-AAACAAAGGCGATATGCAATATTTGGCAATTCACAGAATCGTGCCCTAACGT
1 TAAAAATCCCTTAAAACAAAGGCAATATGC-ATACTTGACAATTC-CAGAATCATGCCCTAACGT
* *
15593445 GCTGGGTTGAAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTTTACTCGTGTCT
64 GCTGGGTTGAAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTCAAAATTTTACTCGTGTCT
15593510 TC
129 TC
** * * * ** *
15593512 TAAAAATCTGTTAAAACGAAGGCAATATTCATGCTTGACAATTCGGGAATCATGCCCTATCGTGC
1 TAAAAATCCCTTAAAACAAAGGCAATATGCATACTTGACAATTCCAGAATCATGCCCTAACGTGC
** * *
15593577 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTT
66 TGGGTTGAAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTT
15593621 TAGGTTTTCA
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
130 55 0.61
131 21 0.23
132 14 0.16
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (130 bp):
TAAAAATCCCTTAAAACAAAGGCAATATGCATACTTGACAATTCCAGAATCATGCCCTAACGTGC
TGGGTTGAAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTCAAAATTTTACTCGTGTCTTC
Found at i:15593646 original size:130 final size:129
Alignment explanation
Indices: 15593427--15593712 Score: 310
Period size: 130 Copynumber: 2.2 Consensus size: 129
15593417 GGCAATTCAC
* * *
15593427 AGAATCGTGCCCTAACGTGCTGGGTTGAAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTTC
1 AGAATCGTGCCCTATCGTGCTGGGTTGAAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTC
* *
15593492 AAAATTTTACTCGTGTCTTCTAAAAATCTGTT-AAAACGAAGGCAATATTC-ATGCTTGACAATT
66 AAAATTTTACTCATGTCTTCTAAAAACCT-TTCAAAACG-AGG-AATATTCGATGCTTGACAATT
15593555 CG
128 CG
* * ** * *
15593557 GGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTT-
1 AGAATCGTGCCCTATCGTGCTGGGTTGAAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTC
* ** * * * * * * *
15593621 TAGGTTTTCACTCATGT-TTGTTAAAAACCTTTCAAAACGAGGGATGTTCGATGTTTGGCGATTT
66 AAAATTTT-ACTCATGTCTT-CTAAAAACCTTTCAAAACGAGGAATATTCGATGCTTGACAATTC
15593685 G
129 G
15593686 AGAATCGTGCCCTATCGTGCTGGGTTG
1 AGAATCGTGCCCTATCGTGCTGGGTTG
15593713 CGCTTTTCCA
Statistics
Matches: 129, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
128 5 0.04
129 48 0.37
130 76 0.59
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (129 bp):
AGAATCGTGCCCTATCGTGCTGGGTTGAAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTC
AAAATTTTACTCATGTCTTCTAAAAACCTTTCAAAACGAGGAATATTCGATGCTTGACAATTCG
Found at i:15599705 original size:21 final size:21
Alignment explanation
Indices: 15599680--15599730 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
15599670 CTTTTGATAT
*
15599680 ACATGATATGATTA-GATATGC
1 ACATGATATG-TTATGAGATGC
15599701 ACATGATATGTTATGAGATGC
1 ACATGATATGTTATGAGATGC
15599722 ACATGATAT
1 ACATGATAT
15599731 ACTCATTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
ACATGATATGTTATGAGATGC
Found at i:15603546 original size:27 final size:26
Alignment explanation
Indices: 15603498--15603557 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
15603488 GCAAGGCTGC
*
15603498 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
15603525 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
15603551 CAGATAT
1 CAGATAT
15603558 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:15603648 original size:27 final size:26
Alignment explanation
Indices: 15603600--15603651 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
15603590 GTGAAGCTGG
*
15603600 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
15603626 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
15603652 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:15608831 original size:2 final size:2
Alignment explanation
Indices: 15608824--15608849 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15608814 AGCAGAACAG
15608824 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
15608850 GGCGAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15609614 original size:27 final size:27
Alignment explanation
Indices: 15609584--15609729 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
15609574 GGGGAAAAAT
* * * *
15609584 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
15609611 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
15609638 GGTTATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
15609665 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
15609692 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
15609719 AATAATTCTAC
1 GGTAATTCTAC
15609730 AACTTATCCA
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:15609631 original size:54 final size:54
Alignment explanation
Indices: 15609584--15609729 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
15609574 GGGGAAAAAT
* * *
15609584 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * *
15609638 GGTTATTCTATCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
15609692 GGTAATTTTACCCTACAGGGGTATTTCAATAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTAC
15609730 AACTTATCCA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:15615396 original size:21 final size:21
Alignment explanation
Indices: 15615370--15615420 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
15615360 ATTTTGATAT
*
15615370 ACATGATATGATATGATATGC
1 ACATGATATGATATGAGATGC
*
15615391 ACATGATATGTTATGAGATGC
1 ACATGATATGATATGAGATGC
15615412 ACATGATAT
1 ACATGATAT
15615421 ACTCATTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
ACATGATATGATATGAGATGC
Found at i:15619244 original size:33 final size:34
Alignment explanation
Indices: 15619175--15619246 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
15619165 GACGGAATAA
*
15619175 CAATGTGGGCCTTAGCCCAATACAGTAACAGTAT
1 CAATATGGGCCTTAGCCCAATACAGTAACAGTAT
* **
15619209 CAATATGGGCCTTAGCCCATTTTAGT-ACAGTAT
1 CAATATGGGCCTTAGCCCAATACAGTAACAGTAT
15619242 CAATA
1 CAATA
15619247 ATGCACGCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 12 0.35
34 22 0.65
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (34 bp):
CAATATGGGCCTTAGCCCAATACAGTAACAGTAT
Found at i:15623368 original size:34 final size:33
Alignment explanation
Indices: 15623325--15623393 Score: 102
Period size: 34 Copynumber: 2.1 Consensus size: 33
15623315 GACGCAATAA
*
15623325 CAATTTGGGCCTTAGCCCAATACAGTAACAGTAT
1 CAATGTGGGCCTTAGCCCAATACAGT-ACAGTAT
* *
15623359 CAATGTGGGCCTTAGCCCATTTCAGTACAGTAT
1 CAATGTGGGCCTTAGCCCAATACAGTACAGTAT
15623392 CA
1 CA
15623394 GTAATGCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 9 0.28
34 23 0.72
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (33 bp):
CAATGTGGGCCTTAGCCCAATACAGTACAGTAT
Found at i:15627212 original size:5 final size:5
Alignment explanation
Indices: 15627204--15627232 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
15627194 TATCATATGT
15627204 CCCAC CCCAC CCCAC CCCAC CCCAC CCCA
1 CCCAC CCCAC CCCAC CCCAC CCCAC CCCA
15627233 TACAATGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.79, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCAC
Found at i:15629417 original size:49 final size:49
Alignment explanation
Indices: 15629225--15629411 Score: 204
Period size: 49 Copynumber: 3.8 Consensus size: 49
15629215 GGGGCGTTAC
* * * *
15629225 ATGAGAGCTAGTGTAAGACATGTCTGGGACAT-ACATCGGCCTCGAGAT
1 ATGAAAGCTAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAT
* * * *
15629273 AT-ACAAGCTACTGTAAGACCTGTCTGGGACATGGCATTGACAC-CGATAG
1 ATGA-AAGCTAGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCGATAT
* * *
15629322 ATGATAGCTAGTGTAAGACCTGTCTGGGACATGGCATC-AGCCTTGATAT
1 ATGAAAGCTAGTGTAAGACCTGTCTGGGACATGACATCGA-CCTCGATAT
15629371 ATGAAAG-TCAGTGTAAGACCTGTCTGGGACATGACATCGAC
1 ATGAAAGCT-AGTGTAAGACCTGTCTGGGACATGACATCGAC
15629412 TTTGATGTGC
Statistics
Matches: 116, Mismatches: 15, Indels: 15
0.79 0.10 0.10
Matches are distributed among these distances:
47 1 0.01
48 30 0.26
49 82 0.71
50 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
ATGAAAGCTAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAT
Found at i:15636997 original size:27 final size:27
Alignment explanation
Indices: 15636964--15637199 Score: 139
Period size: 27 Copynumber: 8.6 Consensus size: 27
15636954 ACATAGGGGT
* *
15636964 AAAATAGTCATCTTACCATAAAAGGGA
1 AAAATAGTCATTTTACCACAAAAGGGA
* *
15636991 AAAATAGTCATTTTACCACATAAGGGC
1 AAAATAGTCATTTTACCACAAAAGGGA
* ** *
15637018 AAAATAATCATTTTACTTCATAAGGGA
1 AAAATAGTCATTTTACCACAAAAGGGA
* * * ** *
15637045 AAAACAATCATTTTACCTCCTAAGGGT
1 AAAATAGTCATTTTACCACAAAAGGGA
* * ***
15637072 AAAATAGTAATTTTACCTCGTCAGGGA
1 AAAATAGTCATTTTACCACAAAAGGGA
* *
15637099 AAAATAGTCATTTTACCCCATAAGGTAAGGGC
1 AAAATAGTCATTTTA--CCACAA---AAGGGA
* * * *
15637131 AAAACAGTCATTTTACCCCATAAGGGC
1 AAAATAGTCATTTTACCACAAAAGGGA
* * * * * *
15637158 AAAACAATCATTTTACCCCATAACGGC
1 AAAATAGTCATTTTACCACAAAAGGGA
*
15637185 AAAATAATCATTTTA
1 AAAATAGTCATTTTA
15637200 TCGATTAAGG
Statistics
Matches: 172, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
27 149 0.87
29 2 0.01
30 3 0.02
32 18 0.10
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (27 bp):
AAAATAGTCATTTTACCACAAAAGGGA
Found at i:15637022 original size:54 final size:54
Alignment explanation
Indices: 15636953--15637199 Score: 201
Period size: 54 Copynumber: 4.5 Consensus size: 54
15636943 AAACATACAT
* * * * * *
15636953 CACATAGGGGTAAAATAGTCATCTTACCATAAAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTACCATATAAGGGAAAAACAATCATTTTAC
* *
15637007 CACATAAGGGCAAAATAATCATTTTA-CTTCATAAGGGAAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTACCAT-ATAAGGGAAAAACAATCATTTTAC
* * * * * * * *
15637061 CTCCTAAGGGTAAAATAGTAATTTTACC-TCGTCAGGGAAAAATAGTCATTTTACCC
1 CACATAAGGGCAAAATAGTCATTTTACCAT-ATAAGGGAAAAACAATCATTTTA--C
* * ** *
15637117 CATAAGGTAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAATCATTTTAC
1 CA-CA--TAAGGGCAAAATAGTCATTTTACCATATAAGGGAAAAACAATCATTTTAC
* * *
15637174 CCCATAACGGCAAAATAATCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
15637200 TCGATTAAGG
Statistics
Matches: 151, Mismatches: 34, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
53 2 0.01
54 104 0.69
55 1 0.01
56 3 0.02
57 2 0.01
59 39 0.26
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (54 bp):
CACATAAGGGCAAAATAGTCATTTTACCATATAAGGGAAAAACAATCATTTTAC
Found at i:15637209 original size:54 final size:54
Alignment explanation
Indices: 15636985--15637210 Score: 208
Period size: 54 Copynumber: 4.1 Consensus size: 54
15636975 CTTACCATAA
* * *
15636985 AAGGGAAAAATAGTCATTTTACCACATAAGGGCAAAATAATCATTTTACTTC-AT
1 AAGGGAAAAACAATCATTTTACCCCATAAGGGCAAAATAATCATTTTAC-TCGAT
* * *
15637039 AAGGGAAAAACAATCATTTTACCTCC-TAAGGGTAAAATAGTAATTTTACCTCG-T
1 AAGGGAAAAACAATCATTTTACC-CCATAAGGGCAAAATAATCATTTTA-CTCGAT
* * * * * * *
15637093 CAGGGAAAAATAGTCATTTTACCCCATAAGGTAAGGGCAAAACAGTCATTTTACCCCAT
1 AAGGGAAAAACAATCATTTTACCCC---A--TAAGGGCAAAATAATCATTTTACTCGAT
* *
15637152 AAGGGCAAAACAATCATTTTACCCCATAACGGCAAAATAATCATTTTA-TCGATT
1 AAGGGAAAAACAATCATTTTACCCCATAAGGGCAAAATAATCATTTTACTCGA-T
15637206 AAGGG
1 AAGGG
15637211 TCCAGGTATG
Statistics
Matches: 138, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
53 4 0.03
54 88 0.64
55 2 0.01
56 1 0.01
58 2 0.01
59 41 0.30
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (54 bp):
AAGGGAAAAACAATCATTTTACCCCATAAGGGCAAAATAATCATTTTACTCGAT
Found at i:15641925 original size:42 final size:42
Alignment explanation
Indices: 15641859--15642015 Score: 127
Period size: 42 Copynumber: 3.7 Consensus size: 42
15641849 GGTGATCTCG
** *
15641859 TGTAAGACCATATCCAGGATATGGCATCGATATTTGATTTCA
1 TGTAAGACCATATCTGGGACATGGCATCGATATTTGATTTCA
* * *** *
15641901 TGTAAGACCATGTCTGGGACATGGCATCCATACGAGATATCA
1 TGTAAGACCATATCTGGGACATGGCATCGATATTTGATTTCA
* * * *
15641943 TGTAAGACCGTAGCTGGG-CTATCGACATCGATATATGTGATTCCA
1 TGTAAGACCATATCTGGGAC-AT-GGCATCGATAT-T-TGATTTCA
* * *
15641988 TGTAAAACCATATTTGGGATATGGCATC
1 TGTAAGACCATATCTGGGACATGGCATC
15642016 TTATTATGTG
Statistics
Matches: 85, Mismatches: 25, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
41 1 0.01
42 50 0.59
43 8 0.09
44 5 0.06
45 21 0.25
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCATCGATATTTGATTTCA
Found at i:15648487 original size:20 final size:20
Alignment explanation
Indices: 15648290--15648484 Score: 214
Period size: 20 Copynumber: 9.8 Consensus size: 20
15648280 TAATAGCATA
* * *
15648290 TGGCACAAATCCATGAGTAG
1 TGGCACAAAGCCATCAATAG
* *
15648310 CGGCACGAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
* **
15648330 CGTTACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
* *
15648350 CGGCACAAA-CCATCAGTAG
1 TGGCACAAAGCCATCAATAG
*
15648369 TAGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
*
15648389 TGGCACAAAGCCGTCAATAG
1 TGGCACAAAGCCATCAATAG
15648409 TGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
* *
15648429 TGACACAAAGCCATTAATAG
1 TGGCACAAAGCCATCAATAG
* *
15648449 TGGCATAAAGCCAT-AAGTAA
1 TGGCACAAAGCCATCAA-TAG
*
15648469 CGGCACAAAGCCATCA
1 TGGCACAAAGCCATCA
15648485 GTAGGTCTAC
Statistics
Matches: 148, Mismatches: 24, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
19 18 0.12
20 129 0.87
21 1 0.01
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.15
Consensus pattern (20 bp):
TGGCACAAAGCCATCAATAG
Found at i:15648518 original size:9 final size:9
Alignment explanation
Indices: 15648504--15648529 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
15648494 CAGTCATCTT
15648504 GTGCAACCC
1 GTGCAACCC
15648513 GTGCAACCC
1 GTGCAACCC
15648522 GTGCAACC
1 GTGCAACC
15648530 TTAGGTCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.42, G:0.23, T:0.12
Consensus pattern (9 bp):
GTGCAACCC
Found at i:15660207 original size:24 final size:25
Alignment explanation
Indices: 15660155--15660210 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
15660145 CTAGTTTCTC
* *
15660155 TTAATTTTTAATTTTATTCAATTAG
1 TTAATTTTTAAGTTTATTCAACTAG
* *
15660180 TTAATTTTTCAGTTTATTGAACTA-
1 TTAATTTTTAAGTTTATTCAACTAG
15660204 TTAATTT
1 TTAATTT
15660211 CTATAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (25 bp):
TTAATTTTTAAGTTTATTCAACTAG
Found at i:15665977 original size:56 final size:56
Alignment explanation
Indices: 15665888--15666053 Score: 205
Period size: 56 Copynumber: 3.0 Consensus size: 56
15665878 TTACATGTAA
* *
15665888 TCACATATCGATGCC-A-CTGTCCTAAAC-TAGGTCTTACTCGCACACATGTATCGAAG
1 TCACATATCGATGCCAACCTAT--TAAACGT-GGTCTTACTCGCACACATATATCGAAG
* * * * *
15665944 TCATATATCGATGCCAACGTATTAAATGTGGTCTTACTCAG-ACACAAATATCAAAG
1 TCACATATCGATGCCAACCTATTAAACGTGGTCTTACTC-GCACACATATATCGAAG
15666000 TCACATATCGATGCCAACCTATTAAACGTGGTCTTACTCGCACACATATATCGA
1 TCACATATCGATGCCAACCTATTAAACGTGGTCTTACTCGCACACATATATCGA
15666054 TGCCATGGCC
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
55 1 0.01
56 87 0.94
57 3 0.03
58 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (56 bp):
TCACATATCGATGCCAACCTATTAAACGTGGTCTTACTCGCACACATATATCGAAG
Found at i:15677366 original size:222 final size:222
Alignment explanation
Indices: 15676975--15677418 Score: 807
Period size: 222 Copynumber: 2.0 Consensus size: 222
15676965 GGCACTTTGG
* * *
15676975 GCTCTTCAACATAGTGGGACAATCATCCTCCCCCACTGTCATCGGCTAGATGTCCCGACAGGGCA
1 GCTCCTCAACATAGTGGCACAATCATCCTCCCCCACTGTCATCGGCTAGATGTCCCCACAGGGCA
* *
15677040 TCTTGAGCATGCTATATATGAGGATGATCGAGAAACGACGTGGCACCTACCCTCCTCAGTACCGC
66 TCTTGAGCATGCTACATATGAGGATGATCGAGAAACGACATGGCACCTACCCTCCTCAGTACCGC
15677105 CTCATCCAGTCCACCAAAAAGGAGGACCCAGAGGACATTACTGATGATGTCCCTCCCCGTCACGA
131 CTCATCCAGTCCACCAAAAAGGAGGACCCAGAGGACATTACTGATGATGTCCCTCCCCGTCACGA
15677170 GGACCCTCCGACTCAGCCACCACCCTC
196 GGACCCTCCGACTCAGCCACCACCCTC
*
15677197 GCTCCTCAACATAGTGGCACAATCGTCCTCCCCCACTGTCATCGGCTAGATGTCCCCACAGGGCA
1 GCTCCTCAACATAGTGGCACAATCATCCTCCCCCACTGTCATCGGCTAGATGTCCCCACAGGGCA
*
15677262 TCTTGAGCATGCTACATATGAGGATGATCGAGAAACGACATGGCACCTACCCTCCTCAGTACTGC
66 TCTTGAGCATGCTACATATGAGGATGATCGAGAAACGACATGGCACCTACCCTCCTCAGTACCGC
*
15677327 CTCATCCAGTCCACCGAAAAGGAGGACCCAGAGGACATTACTGATGATGTCCCTCCCCGTCACGA
131 CTCATCCAGTCCACCAAAAAGGAGGACCCAGAGGACATTACTGATGATGTCCCTCCCCGTCACGA
*
15677392 GGACCCTCCGACTCAGTCACCACCCTC
196 GGACCCTCCGACTCAGCCACCACCCTC
15677419 TCATCGTCCA
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
222 213 1.00
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.19
Consensus pattern (222 bp):
GCTCCTCAACATAGTGGCACAATCATCCTCCCCCACTGTCATCGGCTAGATGTCCCCACAGGGCA
TCTTGAGCATGCTACATATGAGGATGATCGAGAAACGACATGGCACCTACCCTCCTCAGTACCGC
CTCATCCAGTCCACCAAAAAGGAGGACCCAGAGGACATTACTGATGATGTCCCTCCCCGTCACGA
GGACCCTCCGACTCAGCCACCACCCTC
Found at i:15682650 original size:28 final size:29
Alignment explanation
Indices: 15682537--15682651 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
15682527 GTGAGCATGA
* *
15682537 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
15682565 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** * * *
15682594 ATATTCAGGTGATTTGGGTCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
15682623 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
15682651 A
1 A
15682652 GATACAGGTA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 25 0.35
29 46 0.65
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:15687123 original size:29 final size:29
Alignment explanation
Indices: 15687067--15687144 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
15687057 TGTGAGCATG
* *
15687067 AATATAAATGTGA-CTGGGCCTAACGGGC
1 AATATATATGTGATTTGGGCCTAACGGGC
* *
15687095 AATATATATGTGATTTGGGTCTAATGGGC
1 AATATATATGTGATTTGGGCCTAACGGGC
* *
15687124 CATAT-TCAGGTGATTTGGGCC
1 AATATAT-ATGTGATTTGGGCC
15687145 AATAGGCCAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
28 13 0.32
29 28 0.68
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
AATATATATGTGATTTGGGCCTAACGGGC
Found at i:15688016 original size:262 final size:255
Alignment explanation
Indices: 15687557--15688078 Score: 846
Period size: 262 Copynumber: 2.0 Consensus size: 255
15687547 ATGCATACAT
15687557 ATGATGTTCTGCTTAGGCTACATATGGGGTGGGAACTATGGAATGGAGAAAGCATATGAGGATCG
1 ATGATGTTCTGCTTAGGCTACATATGGGGTGGGAACTATGGAATGGAGAAAGCATATGAGGATCG
* *
15687622 CATGGTTGCCTGACAATCCACCGACGGCTTTTAAAGCCCAAGATATAAATGAAGGTGGTTCCGCA
66 CATGGTTGCCTGACAATCCACCGACGGCTTTTAAAGCCCAAGATATAAATGAAGGTAGTTCCACA
*** * * *
15687687 ACTGGGCTACCATGGTGTGTGGGCTGGGTGGGTCGATATTTATATCCCTACATGGTGTGATGGGG
131 ACCAAGCTACCATGGTGTGTGGACTGGGTGGGTCGATATTTATATCCCCACATGGTGTGACGGGG
* *
15687752 GACAGAGCTGGTGTGTAACGGATGTATAATTTGGATTGGATTGCATTGCATGATTGATTA
196 GACAGAGCTGGTGTGTAACGGATGGATAATTTGGATTGGATTGCATTACATGATTGATTA
* *
15687812 ATGATGTTCTGCTTAGGCTGCATATGGGGTGGGAACTATGGAATGGAGAAAGCATATGAGGATTG
1 ATGATGTTCTGCTTAGGCTACATATGGGGTGGGAACTATGGAATGGAGAAAGCATATGAGGATCG
*
15687877 CATGGTTGCCTGACAATCGTGGATCCACCGACGGCTTTTAAAGCCCAATATATAAATGAAGGTAG
66 CATGGTTGCCTGAC-A------ATCCACCGACGGCTTTTAAAGCCCAAGATATAAATGAAGGTAG
*
15687942 TTCTACAACCAAGCTACCATGGTGTGTGGACTGGGTGGGTCGATATTTATATCCCCACATGGTGT
124 TTCCACAACCAAGCTACCATGGTGTGTGGACTGGGTGGGTCGATATTTATATCCCCACATGGTGT
*
15688007 GACGGGGGACAGAGCTGGTGTGTAGCGGATGGATAATTTGGATTGGATTGCATTACATGATTGAT
189 GACGGGGGACAGAGCTGGTGTGTAACGGATGGATAATTTGGATTGGATTGCATTACATGATTGAT
15688072 TA
254 TA
15688074 ATGAT
1 ATGAT
15688079 TTTTTTCGTG
Statistics
Matches: 245, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
255 77 0.31
256 1 0.00
262 167 0.68
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.29
Consensus pattern (255 bp):
ATGATGTTCTGCTTAGGCTACATATGGGGTGGGAACTATGGAATGGAGAAAGCATATGAGGATCG
CATGGTTGCCTGACAATCCACCGACGGCTTTTAAAGCCCAAGATATAAATGAAGGTAGTTCCACA
ACCAAGCTACCATGGTGTGTGGACTGGGTGGGTCGATATTTATATCCCCACATGGTGTGACGGGG
GACAGAGCTGGTGTGTAACGGATGGATAATTTGGATTGGATTGCATTACATGATTGATTA
Found at i:15688517 original size:17 final size:18
Alignment explanation
Indices: 15688485--15688518 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15688475 TTTTCAGAAG
15688485 GGTTTTCAATTAAAACAT
1 GGTTTTCAATTAAAACAT
*
15688503 GGTTTTCGA-TAAAACA
1 GGTTTTCAATTAAAACA
15688519 CTTCAATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (18 bp):
GGTTTTCAATTAAAACAT
Found at i:15691451 original size:34 final size:33
Alignment explanation
Indices: 15691413--15691477 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
15691403 GTAGCAGAAA
15691413 CAGTCTGGG-CTAGAGCCCATTTCAGTATCAGTGG
1 CAGTCTGGGCCT-GAGCCCATTTCAGTA-CAGTGG
* *
15691447 CAGTCTGGGCCTTAGCCCATTTTAGTACAGT
1 CAGTCTGGGCCTGAGCCCATTTCAGTACAGT
15691478 ATGCAAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.29
Consensus pattern (33 bp):
CAGTCTGGGCCTGAGCCCATTTCAGTACAGTGG
Found at i:15696847 original size:46 final size:46
Alignment explanation
Indices: 15696780--15696954 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
15696770 TACTTGGGCA
15696780 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
15696826 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
15696873 TCTGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
15696919 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
15696955 TGCGGGTTAC
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 62 0.59
47 28 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:15696935 original size:93 final size:93
Alignment explanation
Indices: 15696776--15696947 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
15696766 CTGATACTTG
*
15696776 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
15696841 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * * *
15696869 GGCATCTGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
15696934 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
15696948 ACTTATGTGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:15699904 original size:30 final size:29
Alignment explanation
Indices: 15699868--15699924 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
15699858 ATAGTATCGT
*
15699868 ATCTTGGGTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
*
15699898 ATCTTGGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
15699925 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.11, C:0.16, G:0.18, T:0.56
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:15702853 original size:92 final size:93
Alignment explanation
Indices: 15702647--15702911 Score: 361
Period size: 92 Copynumber: 2.9 Consensus size: 93
15702637 TGGATATTTG
* *
15702647 GGCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAG
*
15702712 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTCAGTCCGAGTTCGTGAAATGTAACTA
* * * *
15702740 GGCATCCGAACTTGTTGAGTTGAGTCTGATTTCACTTATGGATGCGAACGTTC-AACTCGTCGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAG
* *
15702804 TTCAGTTCGAGTTTGTGAAATGTAACTA
66 TTCAGTCCGAGTTCGTGAAATGTAACTA
* * * ** * *
15702832 GGCATCTGAACTCGTTTAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAG
**
15702897 TTGGGTCCGAGTTCG
66 TTCAGTCCGAGTTCG
15702912 CTTATGGGCG
Statistics
Matches: 147, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
92 79 0.54
93 68 0.46
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAG
TTCAGTCCGAGTTCGTGAAATGTAACTA
Found at i:15702863 original size:47 final size:47
Alignment explanation
Indices: 15702700--15702863 Score: 127
Period size: 47 Copynumber: 3.5 Consensus size: 47
15702690 GCGAACGTCC
* *
15702700 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTTGTGAAATGTAACTAGGCATCT
* * ***** * * * * *
15702747 GAACTTGTTGAGTTGAGTCTGA-TTTCACTTATGGATGCGA-ACGT-T
1 GAACTCGTTGAGTTGAGTCCGAGTTTGTGAAATGTA-ACTAGGCATCT
* * * *
15702792 CAACTCGTCGAGTTCAGTTCGAGTTTGTGAAATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTTGTGAAATGTAACTAGGCATCT
*
15702839 GAACTCGTTTAGTTGAGTCCGAGTT
1 GAACTCGTTGAGTTGAGTCCGAGTT
15702864 CACTTATGGA
Statistics
Matches: 78, Mismatches: 35, Indels: 8
0.64 0.29 0.07
Matches are distributed among these distances:
45 18 0.23
46 17 0.22
47 43 0.55
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTTGTGAAATGTAACTAGGCATCT
Found at i:15704978 original size:40 final size:40
Alignment explanation
Indices: 15704882--15705033 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
15704872 CGAATGGTAT
* * * *
15704882 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
15704923 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
15704963 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
15705003 CCGGGCTATGT-CCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
15705034 CGCTATATCC
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 17 0.18
40 51 0.55
41 25 0.27
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:15712938 original size:40 final size:40
Alignment explanation
Indices: 15712842--15712994 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
15712832 CGAATGGTAT
* * * *
15712842 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
15712883 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
15712923 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
15712963 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
15712995 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 69 0.73
41 25 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:15720970 original size:24 final size:24
Alignment explanation
Indices: 15720943--15721020 Score: 113
Period size: 24 Copynumber: 3.2 Consensus size: 24
15720933 AAGGCTGTCA
15720943 GGAGAAGATTT-GAGAGCTGATAAG
1 GGAGAAGATTTAG-GAGCTGATAAG
*
15720967 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
15720991 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
15721015 GGAGAA
1 GGAGAA
15721021 CGATGTTGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
24 49 0.98
25 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:15722533 original size:54 final size:53
Alignment explanation
Indices: 15722450--15722555 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 53
15722440 GGAAGCGTCC
* *
15722450 TGGTGGCTATGCCACAATTATCTGATCTGGTGTCACTGCCACATATATCTGTTT
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACACTACCACAT-TATCTGTTT
* * *
15722504 TGGTGGCTCTGCCACAATTATCTGTTCTGGTGACACTATCACATTATCTGTT
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACACTACCACATTATCTGTT
15722556 CTGGCAGCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 8 0.17
54 39 0.83
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (53 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACACTACCACATTATCTGTTT
Found at i:15722556 original size:26 final size:26
Alignment explanation
Indices: 15722459--15722559 Score: 112
Period size: 27 Copynumber: 3.8 Consensus size: 26
15722449 CTGGTGGCTA
* *
15722459 TGCCACAATTATCTGATCTGGTGTCAC
1 TGCCAC-ATTATCTGTTCTGGTGACAC
* * *
15722486 TGCCACATATATCTGTTTTGGTGGCTC
1 TGCCACAT-TATCTGTTCTGGTGACAC
15722513 TGCCACAATTATCTGTTCTGGTGACAC
1 TGCCAC-ATTATCTGTTCTGGTGACAC
**
15722540 TATCACATTATCTGTTCTGG
1 TGCCACATTATCTGTTCTGG
15722560 CAGCCATGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.25
27 45 0.71
28 2 0.03
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (26 bp):
TGCCACATTATCTGTTCTGGTGACAC
Found at i:15725497 original size:29 final size:29
Alignment explanation
Indices: 15725464--15725624 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
15725454 CCTCCGAACT
** * * *
15725464 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
15725493 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15725522 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15725551 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15725580 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15725609 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
15725625 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:15725526 original size:87 final size:87
Alignment explanation
Indices: 15725406--15725624 Score: 244
Period size: 87 Copynumber: 2.5 Consensus size: 87
15725396 TACTCGATTT
** * * ** * *
15725406 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AACACGCAC
* * *
15725469 ACCCAGTGCCGTATTTTTCCAGCT
64 ACCCAGTGCCATATATTTCCAGCA
* ** *
15725493 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
**
15725558 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
*
15725580 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
15725625 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 4 0.04
87 104 0.94
88 3 0.03
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:15727948 original size:5 final size:5
Alignment explanation
Indices: 15727917--15727967 Score: 57
Period size: 5 Copynumber: 9.6 Consensus size: 5
15727907 CAGCCATGGG
* *
15727917 GAAAA GAAGAA GAGAAA GTAGAT GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAA-AA GA-AAA G-AAAA GAAAA GAAAA GAAAA GAAAA GAAAA
15727965 GAA
1 GAA
15727968 GAAAAAAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 28 0.72
6 9 0.23
7 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (5 bp):
GAAAA
Found at i:15727974 original size:10 final size:11
Alignment explanation
Indices: 15727917--15727974 Score: 68
Period size: 10 Copynumber: 5.5 Consensus size: 11
15727907 CAGCCATGGG
15727917 GAAAAGAAGAA
1 GAAAAGAAGAA
* *
15727928 GAGAAAGTAGAT
1 GA-AAAGAAGAA
15727940 GAAAAGAA-AA
1 GAAAAGAAGAA
15727950 GAAAAGAA-AA
1 GAAAAGAAGAA
15727960 GAAAAGAAGAA
1 GAAAAGAAGAA
15727971 -AAAA
1 GAAAA
15727975 AACTGAATCC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
10 23 0.56
11 9 0.22
12 9 0.22
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.03
Consensus pattern (11 bp):
GAAAAGAAGAA
Found at i:15728834 original size:42 final size:42
Alignment explanation
Indices: 15728787--15728878 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
15728777 TGGCCCTTAG
*
15728787 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
15728829 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
15728871 GCCCATTT
1 GCCCATTT
15728879 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:15729064 original size:25 final size:25
Alignment explanation
Indices: 15729032--15729093 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
15729022 TAATAATTAA
15729032 GGCAAAGCCCGTTCT-GATAAACTGG
1 GGCAAAGCCC-TTCTCGATAAACTGG
* *
15729057 GGCAAAGCCCTTTTCGGTAAACTGG
1 GGCAAAGCCCTTCTCGATAAACTGG
*
15729082 GGCAGAGCCCTT
1 GGCAAAGCCCTT
15729094 TTAGCACTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 3 0.09
25 30 0.91
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (25 bp):
GGCAAAGCCCTTCTCGATAAACTGG
Found at i:15729814 original size:29 final size:29
Alignment explanation
Indices: 15729772--15729829 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
15729762 CACCTGTTAT
15729772 GGGTTGAAGTTGAAACGTTTCCATAATCA
1 GGGTTGAAGTTGAAACGTTTCCATAATCA
15729801 GGGTTGAAGTTGAAACGTTTCCATAATCA
1 GGGTTGAAGTTGAAACGTTTCCATAATCA
15729830 ATCACCTACG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (29 bp):
GGGTTGAAGTTGAAACGTTTCCATAATCA
Found at i:15730080 original size:27 final size:27
Alignment explanation
Indices: 15730050--15730135 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
15730040 GTAAATCTAC
15730050 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
15730077 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
15730103 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
15730133 AAA
1 AAA
15730136 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:15730153 original size:27 final size:27
Alignment explanation
Indices: 15730113--15730294 Score: 176
Period size: 27 Copynumber: 6.8 Consensus size: 27
15730103 AGAAAGTCAA
** *
15730113 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
15730140 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
15730166 AGGGTATTTTGGTAATTTCAC-AACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
15730193 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
15730220 GGGTATTTTAGTAATTTTACAAACTA-
1 GGGTATTTTGGTAATTTTACAAACTAG
* **
15730246 GGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTGGTAATTTTA-CAAACTAG
* *
15730273 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
15730295 TCGAGTGTAA
Statistics
Matches: 127, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
26 41 0.32
27 86 0.68
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:15730210 original size:53 final size:53
Alignment explanation
Indices: 15730001--15730294 Score: 193
Period size: 53 Copynumber: 5.5 Consensus size: 53
15729991 TTTACCTATC
** * * * * *
15730001 AGGGGTATTTTAGTAATTTCATCCTACAAGGGTGTTTTGGTAAATCTACAAACC
1 AGGGGTATTTTAGTAATTTCA-CAAACCAGGGTATTTTGGTAATTTTACAAACT
* * *** * * * *
15730055 AAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGT
1 AGGGGTATTTTAGTAATTTCACAAACC-AGGGTATTT-TGGTAA-TTTTACAAACT
* *** **
15730110 CAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-T
1 -AGGGGTATTT-TAGTAATTTCACAAACCA-GGGTATTTTGGTAATTTTACAAACT
* * *
15730164 TGAGGGTATTTTGGTAATTTCAC-AACCAGTGGTATTTCGGTAATTTTACAAACT
1 AG-GGGTATTTTAGTAATTTCACAAACCAG-GGTATTTTGGTAATTTTACAAACT
* * * **
15730218 AGGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTCTATCCTAC-
1 AGGGGTATTTTAGTAATTTCACAAACCAGGGTATTTTGGTAATTTTA-CAAACT
15730271 AGGGGTATTTTAGTAATTTCACAA
1 AGGGGTATTTTAGTAATTTCACAA
15730295 TCGAGTGTAA
Statistics
Matches: 188, Mismatches: 39, Indels: 27
0.74 0.15 0.11
Matches are distributed among these distances:
52 1 0.01
53 84 0.45
54 53 0.28
55 17 0.09
56 33 0.18
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
AGGGGTATTTTAGTAATTTCACAAACCAGGGTATTTTGGTAATTTTACAAACT
Found at i:15730234 original size:80 final size:79
Alignment explanation
Indices: 15730114--15730261 Score: 233
Period size: 80 Copynumber: 1.9 Consensus size: 79
15730104 GAAAGTCAAG
* ** * * *
15730114 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACT-AGGGTATTTTGGT
15730179 AATTTCACAACCAGT
65 AATTTCACAACCAGT
15730194 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTA
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTA
15730259 ATT
66 ATT
15730262 CTATCCTACA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.43
Consensus pattern (79 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTA
ATTTCACAACCAGT
Found at i:15730409 original size:81 final size:81
Alignment explanation
Indices: 15730293--15730490 Score: 263
Period size: 81 Copynumber: 2.4 Consensus size: 81
15730283 GTAATTTCAC
* * * * ***
15730293 AATCGAGTGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACAATAATTTTGTAAATCGAGGGT
* *
15730357 AAAACGGTAATTCTGTA
65 AAAACGATAATTCTATA
*
15730374 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTA
15730439 AAACGATAATTCTATA
66 AAACGATAATTCTATA
* * *
15730455 AATCGATGGTAAAATGGTAATTCTACAAATCAAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
15730491 CATTTCAGTA
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 102 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:15730479 original size:27 final size:27
Alignment explanation
Indices: 15730293--15730478 Score: 230
Period size: 27 Copynumber: 6.9 Consensus size: 27
15730283 GTAATTTCAC
* *
15730293 AATCGAGTGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
15730320 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
15730347 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
15730374 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
15730401 AATCGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
15730428 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
15730455 AATCGATGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAACGGTAATTCT
15730479 ACAAATCAAG
Statistics
Matches: 138, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 136 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:15730503 original size:81 final size:81
Alignment explanation
Indices: 15730336--15730510 Score: 242
Period size: 81 Copynumber: 2.2 Consensus size: 81
15730326 GGGTAAAATG
* * *
15730336 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
* *
15730401 AATCGAGGGTAAAACA
66 AATCAAGGGCAAAACA
* * *
15730417 ATAATTTTGTAAATCGAGGGTGAAACGATAATTCTATAAATCGATGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
***
15730482 AATCAAGGGCATTTCA
66 AATCAAGGGCAAAACA
*
15730498 GTAATTTGGTAAA
1 GTAATTTTGTAAA
15730511 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCAAGGGCAAAACA
Found at i:15733683 original size:40 final size:40
Alignment explanation
Indices: 15733636--15733723 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
15733626 CGGGATGCAG
*
15733636 CCGGATATAG-CAACTCA-CACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTC-ACT-AGCACAAATGCCTTCGGGACTTAGC
15733676 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
15733716 CCGGATAT
1 CCGGATAT
15733724 CATTCGAATA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
39 1 0.02
40 43 0.96
41 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:15740792 original size:40 final size:40
Alignment explanation
Indices: 15740745--15740832 Score: 142
Period size: 40 Copynumber: 2.2 Consensus size: 40
15740735 CGGGATGCAG
* *
15740745 CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGC
15740785 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
15740825 CCGGATAT
1 CCGGATAT
15740833 CATTTGAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 44 0.98
41 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:15741863 original size:2 final size:2
Alignment explanation
Indices: 15741851--15741891 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
15741841 ACAATACTTT
*
15741851 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15741892 TCCTATCTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:15749068 original size:96 final size:89
Alignment explanation
Indices: 15749040--15749636 Score: 271
Period size: 89 Copynumber: 6.7 Consensus size: 89
15749030 GCTATAAACA
* * * * * *
15749040 ACAAATCTTATCTCCCTAAAGTTGCAGTGGGGTAGA-TCAAAGATAGCAAATCTTATCTCCCTAA
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCAAATCTTATCTCCCTGA
* * *
15749104 AGTTGTAGTGGAGCAGATTAAAGCC
65 AGTTGCAATGGAACAGATTAAAGCC
* * * *
15749129 ACAAACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGCTGAAGTTA-CAAGTCTTATCTCCCTGAA
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAA
** * **
15749193 GTTGCAATGGAGTAGATTGAAGAT
66 GTTGCAATGGAACAGATTAAAGCC
* * * * * * * * *
15749217 AGCGAATCGTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAATTA-CAAATCTTCTC
1 A-CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACT---G--A-AGA-TAGCAAATCTTATC
* * ** * **
15749281 TCTCTGAAGTTGCAGT-GAGGTAGATCAAAGAT
58 TCCCTGAAGTTGCAATGGA-ACAGATTAAAGCC
* * * * * *
15749313 AGCAAATCTTATCT-CTCTGAAGTTGTAGTAGAGCAGA-TTAATGCTA-TAAA-CATTATCTTCC
1 A-CAAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACTGAA-GATAGCAAATC-TTATCTCCC
** * * * * **
15749374 TGAAGTTATAGTGGAGCAGGTTGAAGTT
62 TGAAGTTGCAATGGAACAGATTAAAGCC
** * * ** * *
15749402 ACAAGCCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCTCCCTGAA
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAA
* * **
15749466 GTTGCAATGGAGCAGATTGAAGTT
66 GTTGCAATGGAACAGATTAAAGCC
* * * * * * * *
15749490 ACAAGTCTTATTTCTTTGAAATTGCAGTGGAGCAGGCTGAAGATGGAAAATCTTATCT-CCTCAA
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCT-GA
* * *
15749554 AGTTGCAGTGGAGCAGATTGAAGCC
65 AGTTGCAATGGAACAGATTAAAGCC
* * * * * * * *
15749579 ACAAATCTCATTTCCCTAAAGTTGCAGTGGAGCAAATTGAAGCTA-CAAGTCTTATCTC
1 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTC
15749637 TTTGAAGATT
Statistics
Matches: 391, Mismatches: 97, Indels: 40
0.74 0.18 0.08
Matches are distributed among these distances:
88 151 0.39
89 166 0.42
90 4 0.01
92 1 0.00
94 1 0.00
95 5 0.01
96 63 0.16
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (89 bp):
ACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAA
GTTGCAATGGAACAGATTAAAGCC
Found at i:15749158 original size:44 final size:44
Alignment explanation
Indices: 15749040--15749654 Score: 450
Period size: 44 Copynumber: 13.7 Consensus size: 44
15749030 GCTATAAACA
* * * ** *
15749040 ACAAATCTTATCTCCCTAAAGTTGCAGTGGGGTAGATCAAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * * *
15749084 AGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCC
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * ** *
15749129 ACAAACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGCTGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * * *
15749173 ACAAGTCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * * * * *
15749217 AGCGAATCGTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* ** *
15749262 ACAAATTACAAATCT-TCTCTCTCTGAAGTTGCAGT-GAGGTAGATCAAAGAT
1 ACAAA-T-C---T-TATCTC-C-CTGAAGTTGCAGTGGA-GCAGATTGAAGCT
* * *
15749313 AGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATT-AATGCT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-GCT
* * ** * *
15749358 ATAAA-CATTATCTTCCTGAAGTTATAGTGGAGCAGGTTGAAGTT
1 ACAAATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
** * * *
15749402 ACAAGCCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * *
15749446 ACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * ** * ** *
15749490 ACAAGTCTTATTTCTTTGAAATTGCAGTGGAGCAGGCTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* *
15749534 GGA-AAATCTTATCT-CCTCAAAGTTGCAGTGGAGCAGATTGAAGCC
1 --ACAAATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTGAAGCT
* * * *
15749579 ACAAATCTCATTTCCCTAAAGTTGCAGTGGAGCAAATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* ** *
15749623 ACAAGTCTTATCTCTTTGAAGATTGTAGTGGA
1 ACAAATCTTATCTCCCTGAAG-TTGCAGTGGA
15749655 ATCGATCGAA
Statistics
Matches: 457, Mismatches: 90, Indels: 47
0.77 0.15 0.08
Matches are distributed among these distances:
43 2 0.00
44 272 0.60
45 138 0.30
46 5 0.01
47 5 0.01
49 3 0.01
50 5 0.01
51 23 0.05
52 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
Found at i:15749216 original size:133 final size:132
Alignment explanation
Indices: 15748862--15749654 Score: 500
Period size: 133 Copynumber: 5.9 Consensus size: 132
15748852 AATGGCGAAT
* ** * ** * * * **
15748862 CTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCCACAAACCTTATCTCTCTAAAGTTATAG
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * * * * * * *
15748927 TGGAGCAGGTTAAAGTTA-AAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGT
66 TGGAGCAGATTGAAGATACAAA-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTA-C
*
15748991 AAAT
129 AAAC
* * * * * * *
15748995 CTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTATAAACAACAAATCTTATCTCCCTAAA
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAG-T-T-----ACAAATCTTATCTCCCTGAA
* * ** *
15749060 GTTGCAGTGGGGTAGATCAAAGATAGCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAA
59 GTTGCAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAA
*
15749125 AGCCACAAAC
123 AGCTACAAAC
* * *
15749135 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGCTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAA
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * * * * *
15749200 TGGAGTAGATTGAAGATAGCGAATCGTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACA
66 TGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTAC-
15749265 AATTAC
129 AA--AC
* * * ** * *
15749271 AAATCT-TCTCTCTCTGAAGTTGCAGT-GAGGTAGATCAAAGATAGCAAATCTTATCTCTCTGAA
1 --CT-TATCTC-CT-TGAAGTTGCAGTGGA-GCAGGTTGAAGTTA-CAAATCTTATCTCCCTGAA
* * * * * * * *
15749334 GTTGTAGTAGAGCAGATT-AATGCTATAAA-CATTATCTTCCTGAAGTTATAGTGGAGCAGGTTG
59 GTTGCAGTGGAGCAGATTGAA-GATACAAATC-TTATCTCCCTGAAGTTGTAGTGGAGCAGATTA
* *
15749397 AAGTTACAAGC
122 AAGCTACAAAC
* * * *
15749408 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAA
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * ** * * ** * *
15749473 TGGAGCAGATTGAAGTTACAAGTCTTATTTCTTTGAAATTGCAGTGGAGCAGGCTGAAGATGGA-
66 TGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCT--AC
*
15749537 AAAT
129 AAAC
** * ** * * *
15749541 CTTATCTCCTCAAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTCATTTCCCTAAAGTTGCAG
1 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * **
15749606 TGGAGCAAATTGAAGCTACAAGTCTTATCTCTTTGAAGATTGTAGTGGA
66 TGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAG-TTGTAGTGGA
15749655 ATCGATCGAA
Statistics
Matches: 516, Mismatches: 116, Indels: 55
0.75 0.17 0.08
Matches are distributed among these distances:
132 65 0.13
133 221 0.43
134 16 0.03
135 5 0.01
136 2 0.00
137 1 0.00
138 6 0.01
139 9 0.02
140 121 0.23
141 67 0.13
142 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (132 bp):
CTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTACAA
AC
Found at i:15749260 original size:229 final size:226
Alignment explanation
Indices: 15748859--15749654 Score: 840
Period size: 229 Copynumber: 3.5 Consensus size: 226
15748849 TATAATGGCG
* ** *
15748859 AATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCCACAAACCTTATCT-CTCTAAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCT-TAAAGTT
* * * * *
15748923 ATAGTGGAGCAGGTTAAAGTTAAAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGAT
65 ACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT
*
15748988 AGTAAATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTATAAACAACAAATCTTATCT
130 AG-CAATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTAT-AA-AACAAATCTTATCT
*
15749053 CCCTAAAGTTGCAGTGGGGTAGATCAAAGATAGCA
192 CTCTAAAGTTGCAGTGGGGTAGATCAAAGATAGCA
* * *
15749088 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCTTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCTTAAAGTTA
* * *
15749153 CAGTGGAGCAGGCTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGATA
66 CAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
* * * * *
15749218 GCGAATCGTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACAAATCTTCTCTC
131 GC-AATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTATAAA--ACAAATCTTATCTC
* *
15749283 TCTGAAGTTGCAGTGAGGTAGATCAAAGATAGCA
193 TCTAAAGTTGCAGTGGGGTAGATCAAAGATAGCA
* * * * * * * * *
15749317 AATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTAATGCTATAAACATTATCTTCC-TGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATC-TCCTTAAAGTT
* * * * *
15749381 ATAGTGGAGCAGGTTGAAGTTACAAGCCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTT
65 ACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT
* * * * *
15749446 A-CAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAG-T-T---ACAAGTCTTATTTCT
130 AGCAA-TCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTATAAAACAAATCTTATCTCT
* * * * * * *
15749505 TTGAAA-TTGCAGTGGAGCAG-GCTGAAGATGGAA
194 CT-AAAGTTGCAGTGGGGTAGATC-AAAGATAGCA
* * * * *
15749538 AATCTTATCT-CCTCAAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTCATTTCCCTAAAGTT
1 AATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCTTAAAGTT
* ** * ** *
15749602 GCAGTGGAGCAAATTGAAGCTACAAGTCTTATCTCTTTGAAGATTGTAGTGGA
65 ACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAG-TTGCAGTGGA
15749655 ATCGATCGAA
Statistics
Matches: 476, Mismatches: 80, Indels: 29
0.81 0.14 0.05
Matches are distributed among these distances:
220 6 0.01
221 109 0.23
222 12 0.03
227 4 0.01
228 34 0.07
229 306 0.64
230 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (226 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCTTAAAGTTA
CAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
GCAATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTATAAAACAAATCTTATCTCTCT
AAAGTTGCAGTGGGGTAGATCAAAGATAGCA
Found at i:15749694 original size:133 final size:133
Alignment explanation
Indices: 15749417--15749697 Score: 293
Period size: 133 Copynumber: 2.1 Consensus size: 133
15749407 CCTTATCTCC
* * ** * * * *
15749417 CTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGA
1 CTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTCATCTCCCTAAAGTTGCAATGGAGCAAA
* * * * *
15749482 TTGAAGTTACAAGTCTTATTTCTTTGAAATTGCAGTGGAGCAGGCTGAAGATGGAAAATCTTATC
66 TTGAAGCTACAAGTCTTATCTCTTTGAAATTGCAGTGGA-CAGGCTGAAGAAGCAAAATCCTATC
*
15749547 TCCT
130 ACCT
* * *
15749551 C-AAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTCATTTCCCTAAAGTTGCAGTGGAGCAAA
1 CTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTCATCTCCCTAAAGTTGCAATGGAGCAAA
* * *
15749615 TTGAAGCTACAAGTCTTATCTCTTTGAAGATTGTAGTGGA-A-TC-GATCGAAGCAACAATTCCT
66 TTGAAGCTACAAGTCTTATCTCTTTGAA-ATTGCAGTGGACAGGCTGA-AGAAGCAA-AA-TCCT
15749677 AT-ACCT
127 ATCACCT
*
15749683 CTGAAGATGCAGTGG
1 CTGAAGTTGCAGTGG
15749698 GTTGGAATGA
Statistics
Matches: 120, Mismatches: 22, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
130 2 0.02
131 6 0.05
132 7 0.06
133 94 0.78
134 11 0.09
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (133 bp):
CTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAATCTCATCTCCCTAAAGTTGCAATGGAGCAAA
TTGAAGCTACAAGTCTTATCTCTTTGAAATTGCAGTGGACAGGCTGAAGAAGCAAAATCCTATCA
CCT
Found at i:15749929 original size:25 final size:26
Alignment explanation
Indices: 15749867--15749929 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
15749857 TATTAAATAA
*
15749867 AAAAACAAAAGAAAAAAAACTGCAGCC
1 AAAAATAAAAGAAAAAAAAC-GCAGCC
* *
15749894 -CAATTACAAAGAAAAAAAA-GCAGCC
1 AAAAATA-AAAGAAAAAAAACGCAGCC
15749919 AAAAATAAAAG
1 AAAAATAAAAG
15749930 TAAACAGAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
25 10 0.34
26 7 0.24
27 12 0.41
ACGTcount: A:0.67, C:0.16, G:0.11, T:0.06
Consensus pattern (26 bp):
AAAAATAAAAGAAAAAAAACGCAGCC
Found at i:15750257 original size:13 final size:13
Alignment explanation
Indices: 15750239--15750276 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
15750229 TTATTATTAT
15750239 TTTTCTTTCTTTC
1 TTTTCTTTCTTTC
*
15750252 TTTTCTTTCTTAC
1 TTTTCTTTCTTTC
15750265 -TTT-TTTCTTTC
1 TTTTCTTTCTTTC
15750276 T
1 T
15750277 CAAATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 7 0.32
12 3 0.14
13 12 0.55
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCTTTCTTTC
Found at i:15750729 original size:22 final size:22
Alignment explanation
Indices: 15750704--15750746 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15750694 ATTTGGCCCT
15750704 TCTGCATTTTTTGGTTTTTAAA
1 TCTGCATTTTTTGGTTTTTAAA
** *
15750726 TCTGGTTTTTTTTGTTTTTAA
1 TCTGCATTTTTTGGTTTTTAA
15750747 TTTATGCTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.65
Consensus pattern (22 bp):
TCTGCATTTTTTGGTTTTTAAA
Found at i:15751084 original size:16 final size:16
Alignment explanation
Indices: 15751059--15751097 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
15751049 TTTTGACATG
15751059 TTTTATTTAT-TTATT
1 TTTTATTTATGTTATT
15751074 TTTTCATTTATGTTA-T
1 TTTT-ATTTATGTTATT
15751090 TTTTATTT
1 TTTTATTT
15751098 TATTTTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.36
16 11 0.50
17 3 0.14
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTATTTATGTTATT
Found at i:15751091 original size:17 final size:15
Alignment explanation
Indices: 15751059--15751102 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
15751049 TTTTGACATG
15751059 TTTTATTTATTTATT
1 TTTTATTTATTTATT
15751074 TTTTCATTTATGTTA-T
1 TTTT-ATTTAT-TTATT
15751090 TTTTATTTTATTT
1 TTTTA-TTTATTT
15751103 TTTCCCTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 7 0.27
16 16 0.62
17 3 0.12
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTATTTATTTATT
Found at i:15751188 original size:3 final size:3
Alignment explanation
Indices: 15751180--15751228 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
15751170 AGATTATTCG
* *
15751180 TTA TTA TTA TTA TTA TTG TTA TTA -TA TTA TTA TCT- TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
15751224 TTA TT
1 TTA TT
15751229 CTGTTATGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 2 0.05
3 36 0.92
4 1 0.03
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:15751224 original size:23 final size:23
Alignment explanation
Indices: 15751181--15751227 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
15751171 GATTATTCGT
* *
15751181 TATTATTATTATTATTGTTATTA
1 TATTATTATTATCATTATTATTA
15751204 TATTATTATCT-TCATTATTATTA
1 TATTATTAT-TATCATTATTATTA
15751227 T
1 T
15751228 TCTGTTATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (23 bp):
TATTATTATTATCATTATTATTA
Found at i:15754615 original size:51 final size:51
Alignment explanation
Indices: 15754559--15754668 Score: 175
Period size: 51 Copynumber: 2.2 Consensus size: 51
15754549 TACCTTGTAG
* *
15754559 CCAAAGCTATTTTATTTACAAAGTGGCCTTCATAAAGTACCAAACTTGTGT
1 CCAAAGCTATTTTATTCACAAAGTGGCCTTCACAAAGTACCAAACTTGTGT
* * *
15754610 CCAAAGTTATTTTATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGT
1 CCAAAGCTATTTTATTCACAAAGTGGCCTTCACAAAGTACCAAACTTGTGT
15754661 CCAAAGCT
1 CCAAAGCT
15754669 CCACACTTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (51 bp):
CCAAAGCTATTTTATTCACAAAGTGGCCTTCACAAAGTACCAAACTTGTGT
Found at i:15754674 original size:20 final size:20
Alignment explanation
Indices: 15754649--15754688 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15754639 TCACATAGTA
15754649 CCACACTTGTGTCCAAAGCT
1 CCACACTTGTGTCCAAAGCT
15754669 CCACACTTGTGTCCAAAGCT
1 CCACACTTGTGTCCAAAGCT
15754689 ATTATATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.35, G:0.15, T:0.25
Consensus pattern (20 bp):
CCACACTTGTGTCCAAAGCT
Found at i:15754718 original size:71 final size:71
Alignment explanation
Indices: 15754602--15754739 Score: 240
Period size: 71 Copynumber: 1.9 Consensus size: 71
15754592 AAAGTACCAA
* *
15754602 ACTTGTGTCCAAAGTTATTTTATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAG
1 ACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAG
15754667 CTCCAC
66 CTCCAC
* *
15754673 ACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCACATAGTACTAGACTTGTGTCCAAAG
1 ACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAG
15754738 CT
66 CT
15754740 ATTTTATTCC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (71 bp):
ACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAG
CTCCAC
Found at i:15754819 original size:24 final size:24
Alignment explanation
Indices: 15754784--15754883 Score: 119
Period size: 24 Copynumber: 4.0 Consensus size: 24
15754774 ACTTAGCACA
*
15754784 ATGCCATTGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
15754808 ATGCCATGGACTTATTTTACTTAG
1 ATGCCATGGACTTATTTCACTTAG
* *
15754832 CACATTACCATGGATTTATTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
15754860 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
15754884 CACAATGTCA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
24 42 0.66
25 1 0.02
27 1 0.02
28 20 0.31
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:15754831 original size:52 final size:52
Alignment explanation
Indices: 15754772--15754890 Score: 184
Period size: 52 Copynumber: 2.3 Consensus size: 52
15754762 CAGAAATTTC
*
15754772 TCACTTAGCACAATGCCATTGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
* * * * *
15754824 TTACTTAGCACATTACCATGGATTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
15754876 TCACTTAGCACAATG
1 TCACTTAGCACAATG
15754891 TCATATCCTA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:15776121 original size:39 final size:40
Alignment explanation
Indices: 15776063--15776163 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
15776053 AAATTGAATG
* *
15776063 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
15776102 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
15776142 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
15776164 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:15776156 original size:40 final size:40
Alignment explanation
Indices: 15776063--15776245 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
15776053 AAATTGAATG
* * * * *
15776063 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
15776102 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
15776142 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
15776182 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
15776222 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
15776246 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:15784272 original size:40 final size:40
Alignment explanation
Indices: 15784170--15784353 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
15784160 AAATTGAATG
* * * * *
15784170 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
15784210 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
15784250 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
15784290 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
15784330 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
15784354 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:15785854 original size:40 final size:40
Alignment explanation
Indices: 15785799--15785982 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
15785789 GGGTGTTACA
* *
15785799 ATTTATGCTAATGATTATATCCGGGCTAAGACCCGAAGGC
1 ATTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
*
15785839 ATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
1 ATTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
* *
15785879 ATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATTTGTGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
* * ** * *
15785919 ATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGC
1 ATTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
* * *
15785959 AATTGTGCTTGTGGTTATATCCGG
1 ATTTGTGCTAGTGATTATATCCGG
15785983 TTAAATTCCG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
ATTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
Found at i:15789586 original size:17 final size:17
Alignment explanation
Indices: 15789564--15789598 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
15789554 TGTTCTGAGC
15789564 ATTATCTTTTTCAGCTA
1 ATTATCTTTTTCAGCTA
15789581 ATTATCTTTTTCAGCTA
1 ATTATCTTTTTCAGCTA
15789598 A
1 A
15789599 CTCTGGGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.17, G:0.06, T:0.51
Consensus pattern (17 bp):
ATTATCTTTTTCAGCTA
Found at i:15806266 original size:51 final size:51
Alignment explanation
Indices: 15806189--15806334 Score: 208
Period size: 51 Copynumber: 2.9 Consensus size: 51
15806179 CGGATATACG
*
15806189 GTGGCCTTCACATAGTACCACCCTTGTAGCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAAA
* *
15806240 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAGGCTATTTTATTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTAG-CCAAAGCTATTTTATTCACAAA
* * *
15806291 GTGGCCTT--CATAGTACCACACTTGTATCCAATGATATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTC
15806335 CTAAGATCCA
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
49 32 0.37
50 1 0.01
51 54 0.62
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATTTTATTCACAAA
Found at i:15806414 original size:52 final size:53
Alignment explanation
Indices: 15806358--15806475 Score: 195
Period size: 52 Copynumber: 2.3 Consensus size: 53
15806348 AGGAAATTTC
15806358 TCACTTAGCACAATT-CCATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATTGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
** *
15806410 TCACTTAGCAC-ATTGCTGTGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATTGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
15806462 TCACTTAGCACAAT
1 TCACTTAGCACAAT
15806476 GTCATATCCT
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
51 3 0.05
52 56 0.92
53 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.37
Consensus pattern (53 bp):
TCACTTAGCACAATTGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:15806440 original size:28 final size:27
Alignment explanation
Indices: 15806358--15806473 Score: 136
Period size: 24 Copynumber: 4.4 Consensus size: 27
15806348 AGGAAATTTC
*
15806358 TCACTTAGCACAATTCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
15806386 TCACTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
**
15806410 TCACTTAGCACATTGCTGTGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
15806438 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
15806462 TCACTTAGCACA
1 TCACTTAGCACA
15806474 ATGTCATATC
Statistics
Matches: 75, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
24 43 0.57
25 1 0.01
27 2 0.03
28 29 0.39
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:15809689 original size:8 final size:7
Alignment explanation
Indices: 15809655--15809687 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
15809645 GGAAAAGTTG
15809655 AAAAAAT
1 AAAAAAT
15809662 -AAAAAT
1 AAAAAAT
15809668 AAAAAAT
1 AAAAAAT
15809675 AAAAAAT
1 AAAAAAT
15809682 AAAAAA
1 AAAAAA
15809688 ATTAATTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:15810635 original size:59 final size:59
Alignment explanation
Indices: 15810563--15810686 Score: 232
Period size: 59 Copynumber: 2.1 Consensus size: 59
15810553 ATAATACCAA
*
15810563 AACCT-AAATCTCTATACATGCCACTCACTTATATATAAATAAGAATTTATGTTATTCC
1 AACCTGAAATCTCTATACATGCCACTCAATTATATATAAATAAGAATTTATGTTATTCC
15810621 AACCTGAAATCTCTATACATGCCACTCAATTATATATAAATAAGAATTTATGTTATTCC
1 AACCTGAAATCTCTATACATGCCACTCAATTATATATAAATAAGAATTTATGTTATTCC
15810680 AACCTGA
1 AACCTGA
15810687 CAAATTGATA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
58 5 0.08
59 59 0.92
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.35
Consensus pattern (59 bp):
AACCTGAAATCTCTATACATGCCACTCAATTATATATAAATAAGAATTTATGTTATTCC
Found at i:15811798 original size:23 final size:23
Alignment explanation
Indices: 15811772--15811972 Score: 201
Period size: 23 Copynumber: 8.7 Consensus size: 23
15811762 CAAAGTGCCA
* *
15811772 CACTGTAATATAGCCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
*
15811795 CACTGTAACGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* * * *
15811818 CTCTGTATTGTAGCCAAAGTTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
15811841 CACTG-AGATGTAGCCGAAGCTAT
1 CACTGTA-ATGTAGCCGAAGCTAC
* * *
15811864 CACTATATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
15811887 CGCTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* * *
15811910 CACTATATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
15811933 CACTGTATTGTAGCCGAAACTAC
1 CACTGTAATGTAGCCGAAGCTAC
15811956 CACTG-AGATGTAGCCGA
1 CACTGTA-ATGTAGCCGA
15811973 TAGATTCCTA
Statistics
Matches: 144, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
22 3 0.02
23 139 0.97
24 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:15811970 original size:46 final size:46
Alignment explanation
Indices: 15811782--15811959 Score: 234
Period size: 46 Copynumber: 3.9 Consensus size: 46
15811772 CACTGTAATA
* * * * *
15811782 TAGCCGAAGCTATCACTGTA-ACGTAGCCGAAGCTACCTCTGTATTG
1 TAGCCAAAGCTACCACTG-AGATGTAGCCGAAGCTACCACTATATTG
* *
15811828 TAGCCAAAGTTACCACTGAGATGTAGCCGAAGCTATCACTATATTG
1 TAGCCAAAGCTACCACTGAGATGTAGCCGAAGCTACCACTATATTG
*
15811874 TAGCCAAAGCTACCGCTGAGATGTAGCCGAAGCTACCACTATATTG
1 TAGCCAAAGCTACCACTGAGATGTAGCCGAAGCTACCACTATATTG
* *
15811920 TAGCCAAAGCTACCACTGTA-TTGTAGCCGAAACTACCACT
1 TAGCCAAAGCTACCACTG-AGATGTAGCCGAAGCTACCACT
15811960 GAGATGTAGC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
45 1 0.01
46 115 0.98
47 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TAGCCAAAGCTACCACTGAGATGTAGCCGAAGCTACCACTATATTG
Found at i:15811971 original size:69 final size:69
Alignment explanation
Indices: 15811782--15811972 Score: 226
Period size: 69 Copynumber: 2.8 Consensus size: 69
15811772 CACTGTAATA
** * * * * *
15811782 TAGCCGAAGCTATCACTGTAACGTAGCCGAAGCTACCTCTGTA-TTGTAGCCAAAGTTACCACTG
1 TAGCCGAAGCTATCACTGTATTGTAGCCGAAACTACCACTG-AGATGTAGCCGAAGCTACCACTG
15811846 AGATG
65 AGATG
* *
15811851 TAGCCGAAGCTATCACTATATTGTAGCC-AAAGCTACCGCTGAGATGTAGCCGAAGCTACCACT-
1 TAGCCGAAGCTATCACTGTATTGTAGCCGAAA-CTACCACTGAGATGTAGCCGAAGCTACCACTG
*
15811914 ATATTG
65 AGA-TG
* *
15811920 TAGCCAAAGCTACCACTGTATTGTAGCCGAAACTACCACTGAGATGTAGCCGA
1 TAGCCGAAGCTATCACTGTATTGTAGCCGAAACTACCACTGAGATGTAGCCGA
15811973 TAGATTCCTA
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
68 5 0.05
69 97 0.92
70 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (69 bp):
TAGCCGAAGCTATCACTGTATTGTAGCCGAAACTACCACTGAGATGTAGCCGAAGCTACCACTGA
GATG
Found at i:15817160 original size:40 final size:39
Alignment explanation
Indices: 15817000--15817162 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
15816990 TGTGTATGAA
*
15817000 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
15817039 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
15817078 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
15817117 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
15817157 TGTGCG
1 TGTGCG
15817163 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:15817178 original size:40 final size:39
Alignment explanation
Indices: 15817000--15817193 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
15816990 TGTGTATGAA
* *
15817000 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
15817039 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
15817078 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
15817117 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
15817157 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
15817194 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:15824091 original size:40 final size:39
Alignment explanation
Indices: 15823931--15824093 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
15823921 TGTGTATGAA
*
15823931 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
15823970 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
15824009 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
15824048 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
15824088 TGTGCG
1 TGTGCG
15824094 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:15824109 original size:40 final size:39
Alignment explanation
Indices: 15823931--15824124 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
15823921 TGTGTATGAA
* *
15823931 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
15823970 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
15824009 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
15824048 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
15824088 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
15824125 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:15830554 original size:39 final size:40
Alignment explanation
Indices: 15830452--15830635 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
15830442 TCGAATGATG
* * *
15830452 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
15830492 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15830532 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15830571 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15830611 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15830636 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
38 8 0.06
39 53 0.41
40 61 0.47
41 7 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15830667 original size:118 final size:118
Alignment explanation
Indices: 15830454--15830668 Score: 258
Period size: 118 Copynumber: 1.8 Consensus size: 118
15830444 GAATGATGTC
* *
15830454 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTCGA
* *
15830519 GCGAGTTACTAAATCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
66 ACGAGTTACTAAATCCGGACTAACTCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * * * *
15830572 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCATTC
* *
15830635 GAACGAG-TAGCTATATCCGG-TTAAACTCCGAAGG
64 GAACGAGTTA-CTAAATCCGGACT-AACTCCGAAGG
15830669 TACGTGATTG
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
117 4 0.05
118 70 0.86
119 7 0.09
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTCGA
ACGAGTTACTAAATCCGGACTAACTCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:15838740 original size:40 final size:40
Alignment explanation
Indices: 15838548--15838733 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
15838538 TCGAATGATG
* * *
15838548 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
15838588 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15838628 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15838668 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15838709 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15838734 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15838740 original size:80 final size:80
Alignment explanation
Indices: 15838548--15838766 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 80
15838538 TCGAATGATG
* * **
15838548 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
15838612 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
15838628 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
15838691 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTA-AA
* **
15838709 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
15838767 TACGTGATTC
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
79 17 0.14
80 93 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:15844664 original size:17 final size:17
Alignment explanation
Indices: 15844642--15844676 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
15844632 CTTGAGTGTT
15844642 AATTCCATATTCTGAGA
1 AATTCCATATTCTGAGA
15844659 AATTCCATATTCTGAGA
1 AATTCCATATTCTGAGA
15844676 A
1 A
15844677 GAAGCTCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (17 bp):
AATTCCATATTCTGAGA
Found at i:15855255 original size:13 final size:13
Alignment explanation
Indices: 15855237--15855262 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15855227 TGAATTTACC
15855237 TATGACATGAATA
1 TATGACATGAATA
15855250 TATGACATGAATA
1 TATGACATGAATA
15855263 AATATACTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
TATGACATGAATA
Found at i:15869733 original size:95 final size:93
Alignment explanation
Indices: 15869524--15869733 Score: 251
Period size: 94 Copynumber: 2.2 Consensus size: 93
15869514 GGAGGAAGCG
* * *
15869524 TACGACCTGTAGCCATCCTGTATAAGGCTTTCAGCCTTCCTGTGATACTTATGGCTTACGTTGTT
1 TACGGCCTGTAGCCATCCTGTATAAGGCTTTCAGCCTTCCTGCGATACTTATGGATTAC-TTGTT
* *
15869589 CTGATAATTGGCAGCACTGCTGCGATATT
65 CTGATAACTGGCAGCACTACTGCGATATT
* * *
15869618 TACGGCCTGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGATTA-TTGCCA
1 TACGGCCTGTAGCCATCCTGTATAAGGCTTTCAGCCTTCCTGCGATACTTATGGATTACTTG---
* ***
15869682 TTCTGTTAACTGGCAGTGTTACTGCGATATT
63 TTCTGATAACTGGCAGCACTACTGCGATATT
* *
15869713 TACGGCCTTTAGCCAACCTGT
1 TACGGCCTGTAGCCATCCTGT
15869734 CTACGGCGTT
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
92 3 0.03
94 52 0.54
95 42 0.43
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (93 bp):
TACGGCCTGTAGCCATCCTGTATAAGGCTTTCAGCCTTCCTGCGATACTTATGGATTACTTGTTC
TGATAACTGGCAGCACTACTGCGATATT
Found at i:15869748 original size:22 final size:22
Alignment explanation
Indices: 15869713--15869797 Score: 98
Period size: 22 Copynumber: 3.9 Consensus size: 22
15869703 CTGCGATATT
* * *
15869713 TACGGCCTTTAGCCAACCTGTC
1 TACGGCGTTGAGCCATCCTGTC
*
15869735 TACGGCGTTGAGCCATCCTATC
1 TACGGCGTTGAGCCATCCTGTC
* *
15869757 TACGACATTGAGCCATCCTGTC
1 TACGGCGTTGAGCCATCCTGTC
* *
15869779 TACAGCGTTGAGCCGTCCT
1 TACGGCGTTGAGCCATCCT
15869798 TTGACTCAGT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.19, C:0.33, G:0.21, T:0.27
Consensus pattern (22 bp):
TACGGCGTTGAGCCATCCTGTC
Found at i:15873143 original size:95 final size:95
Alignment explanation
Indices: 15872980--15873181 Score: 316
Period size: 95 Copynumber: 2.1 Consensus size: 95
15872970 GTGTACGACC
* * *
15872980 TGTAGCCGTCCTGTATAAGGCTTTCAGCCTTTCTGTGATACTTATGGCTTATAGTTGTTCTGTTA
1 TGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCTGTTCTGTTA
15873045 ATTGGCAGCGCTGCTACGATATTTACAACA
66 ATTGGCAGCGCTGCTACGATATTTACAACA
* *
15873075 TGTAGTCGTCCTGTATAAGGCTTTCATCCTTTTTGCGATACTTATGGCTTATAGCTGTTCTGTTA
1 TGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCTGTTCTGTTA
* * *
15873140 ATTGGCAGCGTTGCTGCGATATTTACAGCA
66 ATTGGCAGCGCTGCTACGATATTTACAACA
15873170 T-TGAGTCGTCCT
1 TGT-AGTCGTCCT
15873182 ATCTATGGCA
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
94 1 0.01
95 97 0.99
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (95 bp):
TGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCTGTTCTGTTA
ATTGGCAGCGCTGCTACGATATTTACAACA
Found at i:15875104 original size:2 final size:2
Alignment explanation
Indices: 15875097--15875130 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
15875087 TGGTTATTTG
15875097 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15875131 GAATTATGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15876330 original size:14 final size:14
Alignment explanation
Indices: 15876311--15876349 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
15876301 TTGTTTCACT
15876311 GAAAATGACTTTC-G
1 GAAAATGA-TTTCTG
15876325 GAAAATGATTTCTG
1 GAAAATGATTTCTG
15876339 GAAAATGATTT
1 GAAAATGATTT
15876350 ACTTTTCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTG
Found at i:15876984 original size:22 final size:22
Alignment explanation
Indices: 15876941--15876984 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15876931 TTATTAAATA
*
15876941 ATTTATTAAAATAATAAATTAT
1 ATTTATTAAAATAACAAATTAT
* * *
15876963 ATTTATTACATTAACAATTTAT
1 ATTTATTAAAATAACAAATTAT
15876985 TATAAGAATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTATTAAAATAACAAATTAT
Found at i:15882868 original size:29 final size:29
Alignment explanation
Indices: 15882834--15882908 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
15882824 TACTCGATTT
*
15882834 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
15882863 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
15882892 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
15882909 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:15882925 original size:29 final size:29
Alignment explanation
Indices: 15882892--15882965 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
15882882 CCTTCGAGCT
15882892 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
15882921 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
15882950 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
15882966 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Done.