Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 69 of 410
Found at i:19310782 original size:33 final size:30
Alignment explanation
Indices: 19310724--19310793 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
19310714 TAATATTATG
*
19310724 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
* *
19310754 CTATATGATTTCTAATACTATTATTTATATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
19310787 TATATAT
1 TATATAT
19310794 ATATATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:19310786 original size:2 final size:2
Alignment explanation
Indices: 19310779--19310805 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
19310769 TACTATTATT
19310779 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
19310806 TTCTTAGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19320868 original size:38 final size:40
Alignment explanation
Indices: 19320716--19320891 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
19320706 AAACCAAGTA
* *
19320716 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
19320755 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
19320795 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
19320835 CCTTC-GG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
19320873 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
19320892 TTATCATCCG
Statistics
Matches: 128, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
37 1 0.01
38 32 0.25
39 18 0.14
40 77 0.60
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:19320881 original size:78 final size:80
Alignment explanation
Indices: 19320716--19320891 Score: 263
Period size: 78 Copynumber: 2.2 Consensus size: 80
19320706 AAACCAAGTA
* *
19320716 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
19320780 TAACTCGCACAAATG
66 TAACTAGCACAAATG
19320795 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GG-CTTAGCCCGGA-ATT
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
19320856 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
19320873 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
19320892 TTATCATCCG
Statistics
Matches: 90, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.51
79 16 0.18
80 27 0.30
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:19328731 original size:40 final size:40
Alignment explanation
Indices: 19328661--19328876 Score: 314
Period size: 40 Copynumber: 5.4 Consensus size: 40
19328651 AAACCATGTA
* *
19328661 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
19328700 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
19328740 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
19328780 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
19328820 CCTTCAGTG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTC-GGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
19328860 CCTTCAGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
19328877 AGTTATCATC
Statistics
Matches: 164, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
39 16 0.10
40 146 0.89
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:19333215 original size:47 final size:48
Alignment explanation
Indices: 19333149--19333251 Score: 154
Period size: 47 Copynumber: 2.2 Consensus size: 48
19333139 TATCAGTATT
* *
19333149 GATGCCATGTTCCAAACATGGTCTTACACT-AGCTACCTATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
* * *
19333196 GATGCCATGTCCCAGACATGGTCTTACACTAACCTTCCTATCGAGGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
19333244 GATGCCAT
1 GATGCCAT
19333252 ATCCTTACAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 28 0.56
48 22 0.44
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAACCTACCTATCGAGGCC
Found at i:19333325 original size:87 final size:88
Alignment explanation
Indices: 19333194--19333418 Score: 228
Period size: 96 Copynumber: 2.5 Consensus size: 88
19333184 CCTATCGAGG
* * *
19333194 CCGATGCCATGTCCCAGACATGGTCTTACACTAACCTTC-C-TATCGAGG-TCGATGCCA-TATC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGA-C-TCACATATCGAGGCT-GATGCCAGTATC
*
19333255 -C-TTACACTAGCTCTCATATATCAATG
63 ACTTTACACTAGCTCTC--ATATCAATC
* *
19333281 CTGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCGAGGCTGATGCCATGTTTCAA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCGAGGCTGATGCCA-GTATC--
19333346 ACATAGTTTTACACTAGCTCTCATATCAATC
63 AC-----TTTACACTAGCTCTCATATCAATC
*
19333377 CCGATGCCATATTCCAAACATGGTCTTACACTGACTCACATA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATA
19333419 ACCCTAGTAT
Statistics
Matches: 116, Mismatches: 8, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
85 2 0.02
86 2 0.02
87 45 0.39
88 1 0.01
89 3 0.03
92 1 0.01
96 48 0.41
98 14 0.12
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (88 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCGAGGCTGATGCCAGTATCACT
TTACACTAGCTCTCATATCAATC
Found at i:19333335 original size:48 final size:48
Alignment explanation
Indices: 19333267--19333418 Score: 189
Period size: 48 Copynumber: 3.2 Consensus size: 48
19333257 TACACTAGCT
* *
19333267 CTCATATATCAATGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
1 CTCACATATCAAGGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
* * * *
19333315 CTCACATATCGAGGCTGATGCCATGTTTCAAACATAGTTTTACACT-A
1 CTCACATATCAAGGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
* ** * *
19333362 GCTCTCATATCAATCCCGATGCCATATTCCAAACATGGTCTTACACTGA
1 -CTCACATATCAAGGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
19333411 CTCACATA
1 CTCACATA
19333419 ACCCTAGTAT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.01
48 84 0.98
49 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (48 bp):
CTCACATATCAAGGCTGATGCCATGTTCCAAACATGGTCTTACACTGA
Found at i:19342968 original size:39 final size:40
Alignment explanation
Indices: 19342912--19342994 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 40
19342902 TACTATTTGG
* *
19342912 TTCAGGGTTACCAAAGTATAAACA-AGGCACGAATGTGCA
1 TTCAGGGGTACCAAAGTACAAACAGAGGCACGAATGTGCA
* * * *
19342951 TTCAGGGGTACCGAAGTACCAACAGGGGCACGTATGTGCA
1 TTCAGGGGTACCAAAGTACAAACAGAGGCACGAATGTGCA
19342991 TTCA
1 TTCA
19342995 ACAATAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 20 0.54
40 17 0.46
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (40 bp):
TTCAGGGGTACCAAAGTACAAACAGAGGCACGAATGTGCA
Found at i:19343039 original size:32 final size:33
Alignment explanation
Indices: 19342994--19343067 Score: 123
Period size: 32 Copynumber: 2.3 Consensus size: 33
19342984 ATGTGCATTC
*
19342994 AACAATAATTATCTATAAACATATTAACTAAA-
1 AACAATAATTATCTATAAAAATATTAACTAAAG
*
19343026 AACCATAATTATCTATAAAAATATTAACTAAAG
1 AACAATAATTATCTATAAAAATATTAACTAAAG
19343059 AACAATAAT
1 AACAATAAT
19343068 ATAAGATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
32 30 0.79
33 8 0.21
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.30
Consensus pattern (33 bp):
AACAATAATTATCTATAAAAATATTAACTAAAG
Found at i:19345000 original size:28 final size:28
Alignment explanation
Indices: 19344954--19345028 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 28
19344944 CAAACCATAT
** * * *
19344954 ATTTTGATTTTTAAATTTTAATTTTAGT
1 ATTTTGATTTTCCATTTTTAATTTGAGA
*
19344982 TTTTTGATTTTCCATTTTTAATTTGAGA
1 ATTTTGATTTTCCATTTTTAATTTGAGA
* *
19345010 AGTTTGATTTTGCATTTTT
1 ATTTTGATTTTCCATTTTT
19345029 TAATATTTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.23, C:0.04, G:0.11, T:0.63
Consensus pattern (28 bp):
ATTTTGATTTTCCATTTTTAATTTGAGA
Found at i:19351404 original size:34 final size:34
Alignment explanation
Indices: 19351366--19351443 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
19351356 CACATTATAA
19351366 TGCATCATTTTAAACATCATATT-TAGTTTCATAT
1 TGCATCATTTTAAACATCAT-TTCTAGTTTCATAT
* * * * *
19351400 TGCATCATTGTAGACATCATTTCTTGTTTCCTTT
1 TGCATCATTTTAAACATCATTTCTAGTTTCATAT
19351434 TGCATCATTT
1 TGCATCATTT
19351444 AGTTTTTTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
33 2 0.05
34 35 0.95
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.49
Consensus pattern (34 bp):
TGCATCATTTTAAACATCATTTCTAGTTTCATAT
Found at i:19355524 original size:66 final size:66
Alignment explanation
Indices: 19355397--19355524 Score: 177
Period size: 66 Copynumber: 1.9 Consensus size: 66
19355387 TACTATGTGT
* * * *
19355397 ACACCATGTAGACAAGAGAGCTACGGGATATATGTACTAGGTCGCATGCGTGGTTCCAAGTGAAG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATGTACTAGGTCACATGCGTGGTACCAAGTGAAG
19355462 G
66 G
* * *
19355463 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAA-TGTACTAGGTCACATGCGTGGTACCAAGTG
19355525 TTCACCATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 52 0.96
67 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (66 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGTACTAGGTCACATGCGTGGTACCAAGTGAAG
G
Found at i:19356635 original size:2 final size:2
Alignment explanation
Indices: 19356628--19356672 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
19356618 TCATGACATG
19356628 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19356670 TA T
1 TA T
19356673 GACTAGTCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:19360445 original size:28 final size:28
Alignment explanation
Indices: 19360401--19360467 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
19360391 TCTCACTGTT
* *
19360401 CGAAATATTCAGAATGACACTTAGTGTG
1 CGAAATATTGAGAATGACACTTAATGTG
*
19360429 CGAGATATTGAGAATGACACTTAATGTG
1 CGAAATATTGAGAATGACACTTAATGTG
*
19360457 TGAAATATTGA
1 CGAAATATTGA
19360468 ATGATTCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.30
Consensus pattern (28 bp):
CGAAATATTGAGAATGACACTTAATGTG
Found at i:19360630 original size:41 final size:41
Alignment explanation
Indices: 19360584--19360696 Score: 97
Period size: 40 Copynumber: 2.8 Consensus size: 41
19360574 GGTGATATTT
*
19360584 GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTAAATC
1 GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATAAAATC
* * * *
19360625 GGGC-TT-ATGCCTAGC-AGGCTTATTGCCGGTGTATAAAATC
1 GGGCTTTGA-GCCTAGCAAGCCTT-GTGCTGGTGAATAAAATC
* * * * *
19360665 AGACTTTGAGTCTAGTAGGCCTTGTGCTGGTG
1 GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTG
19360697 TGAGATACAA
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
39 6 0.11
40 25 0.46
41 18 0.33
42 5 0.09
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (41 bp):
GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATAAAATC
Found at i:19365606 original size:33 final size:32
Alignment explanation
Indices: 19365534--19365613 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 32
19365524 CTGTGTGGAG
* * *
19365534 ATGGGCTAAGACCCACACTGTTACTGATACTGT
1 ATGGGCTAAG-GCCACACTGATACTGAGACTGT
* *
19365567 ATTGGGCTAAGGCCACACTGATATTGCGACTGAT
1 A-TGGGCTAAGGCCACACTGATACTGAGACTG-T
*
19365601 ATGGGCTTAGGCC
1 ATGGGCTAAGGCC
19365614 TAGTTGTGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
33 28 0.72
34 11 0.28
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (32 bp):
ATGGGCTAAGGCCACACTGATACTGAGACTGT
Found at i:19370528 original size:12 final size:11
Alignment explanation
Indices: 19370502--19370529 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
19370492 GTTTTATCCC
19370502 TTTTTGGCTCG
1 TTTTTGGCTCG
19370513 TTTTTGGCTCG
1 TTTTTGGCTCG
19370524 TTTTTG
1 TTTTTG
19370530 ACTCCTGACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.25, T:0.61
Consensus pattern (11 bp):
TTTTTGGCTCG
Found at i:19372419 original size:6 final size:6
Alignment explanation
Indices: 19372414--19372456 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
19372404 AAATTGAAAT
*
19372414 AAAAAT AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
19372457 TAAGAGGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:19374161 original size:40 final size:39
Alignment explanation
Indices: 19374117--19374341 Score: 290
Period size: 40 Copynumber: 5.7 Consensus size: 39
19374107 GCCACTAGCT
*
19374117 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
19374157 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
19374196 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
19374236 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
19374276 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
19374316 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
19374342 TATCATCCGA
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 40 0.24
40 127 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:19382245 original size:40 final size:39
Alignment explanation
Indices: 19382171--19382376 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
19382161 CCTTCGGAGT
* ** * *
19382171 TTAGCCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
19382210 TTAGCCCGATTTTAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGA-TATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
19382250 TTAGCCCGGTATAATAACTCGCACAAATGCCTTCAGGAC
1 TTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGAC
* **
19382289 TTAGCCCGGATATAGTAGCTCGCATGAATGCCTTCGGGAC
1 TTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
19382329 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCC-GATA-TAGTAACTCGCACAAATGCCT-TCGGGAC
19382369 TTAGCCCG
1 TTAGCCCG
19382377 GTTATCATCC
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 45 0.32
40 94 0.68
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:19385886 original size:79 final size:79
Alignment explanation
Indices: 19385750--19385939 Score: 226
Period size: 79 Copynumber: 2.4 Consensus size: 79
19385740 GAATGATGTC
* * *
19385750 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCG
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
19385814 TGCGAGTTA-ATAAA
65 TGCGAGTTACATAAA
* **
19385828 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 --CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
19385891 CGTGCGAGTTACTATAAA
63 CGTGCGAGTTAC-ATAAA
** *
19385909 CGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
19385940 CGTTATATCC
Statistics
Matches: 96, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 54 0.56
80 36 0.38
81 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGT
GCGAGTTACATAAA
Found at i:19385902 original size:40 final size:40
Alignment explanation
Indices: 19385748--19385939 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
19385738 TTGAATGATG
* * *
19385748 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
19385788 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
19385828 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
19385867 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* ** *
19385908 -ACGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
19385940 CGTTATATCC
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 33 0.26
40 85 0.67
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:19385963 original size:79 final size:77
Alignment explanation
Indices: 19385750--19385965 Score: 204
Period size: 79 Copynumber: 2.7 Consensus size: 77
19385740 GAATGATGTC
* * *
19385750 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGA-TCCGAAGGCATTC
1 CGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGGA-TAA-ATTCCGAAGGCATTC
19385813 GTGCGAGTTAATAAATT
62 GTGCGAGTTAATAAA-T
* * * * * * *
19385830 CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGATAAATTCCGAAGGCATTCGTG
19385895 CGAGTTACTATAAA-
65 CGAGTTA--ATAAAT
** **
19385909 CGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGATAAATTCCGAAGG
1 CGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGG
19385966 TACGTGATTC
Statistics
Matches: 112, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
79 64 0.57
80 43 0.38
81 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (77 bp):
CGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGGCATTCGTGC
GAGTTAATAAAT
Found at i:19394679 original size:24 final size:24
Alignment explanation
Indices: 19394647--19394694 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
19394637 GCGAAGAGAA
19394647 GGGAGTCTGATCTTTTTGATAGTT
1 GGGAGTCTGATCTTTTTGATAGTT
19394671 GGGAGTCTGATCTTTTTGATAGTT
1 GGGAGTCTGATCTTTTTGATAGTT
19394695 TCAACTGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.08, G:0.29, T:0.46
Consensus pattern (24 bp):
GGGAGTCTGATCTTTTTGATAGTT
Found at i:19397984 original size:37 final size:37
Alignment explanation
Indices: 19397930--19398037 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
19397920 GCTCAGACGA
*
19397930 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
19397967 ACTCTCCACACGTAGTCATCCGGG-CTTACCCGGACAT
1 AATCTCCACACGTAGTCAT-CGGGTCTTACCCGGACAT
* *
19398004 AATTTCCACACGTAGTCATCGGGTCTTACGCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
19398038 ATATATTTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
36 4 0.06
37 56 0.88
38 4 0.06
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:19398153 original size:48 final size:48
Alignment explanation
Indices: 19398082--19398561 Score: 667
Period size: 48 Copynumber: 10.0 Consensus size: 48
19398072 TGTTACAACC
*
19398082 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
19398130 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * *
19398178 TTTACATTCGCCATTCGGCTTTACCACGTATACATATCTCGA-ATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCAC-ACATATAT
* *
19398226 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
**
19398274 TTCACATTAGCCATTCGGCTTTACCATGTATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * ** *
19398322 TTCACATTTGCCATTCGGCTTTACCACGTATACATATCTCGTATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** *
19398370 TTCACATTCTCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
19398418 TTCACATTAGCCATTCGGCTTTACCACGTATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * ** * *
19398466 TTCACATTCA-CCATTCGGCTTTACCACGTATACATATCTCGTATGTAA
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
19398514 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
19398562 ATATTTATCT
Statistics
Matches: 380, Mismatches: 48, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.00
48 377 0.99
49 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:19398276 original size:144 final size:144
Alignment explanation
Indices: 19398082--19398561 Score: 870
Period size: 144 Copynumber: 3.3 Consensus size: 144
19398072 TGTTACAACC
*
19398082 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
* * *
19398147 ACTTTACCACATATACATATCACACATATATTTTACATTCGCCATTCGGCTTTACCACGTATACA
66 GCTTTACCACGTATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACGTATACA
*
19398212 TATCTCGAATGTAT
131 TATCTCGTATGTAT
19398226 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
* *
19398291 GCTTTACCATGTATACATATCACACATATATTTCACATTTGCCATTCGGCTTTACCACGTATACA
66 GCTTTACCACGTATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACGTATACA
19398356 TATCTCGTATGTAT
131 TATCTCGTATGTAT
*
19398370 TTCACATTCTCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
*
19398435 GCTTTACCACGTATACATATCACACATATATTTCACATTCACCATTCGGCTTTACCACGTATACA
66 GCTTTACCACGTATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACGTATACA
*
19398500 TATCTCGTATGTAA
131 TATCTCGTATGTAT
19398514 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
19398562 ATATTTATCT
Statistics
Matches: 323, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 323 1.00
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (144 bp):
TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
GCTTTACCACGTATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACGTATACA
TATCTCGTATGTAT
Found at i:19402632 original size:40 final size:40
Alignment explanation
Indices: 19402588--19402938 Score: 533
Period size: 40 Copynumber: 8.8 Consensus size: 40
19402578 CCAGCATGAT
* * * *
19402588 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * **
19402628 TGCTCTTCGGGACTTAGTCCGGTTGCATTTCTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
19402668 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
19402708 TGCTCTTCGGAACTTAGTCCGGTTGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
19402748 TGCTATTCGGAACTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
19402788 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
19402828 TGCTCTT-GGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
19402867 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * *
19402907 TGCTCTTCGGGATTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
19402939 CTCAATTCTC
Statistics
Matches: 284, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 39 0.14
40 245 0.86
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:19404237 original size:36 final size:37
Alignment explanation
Indices: 19404169--19404275 Score: 180
Period size: 36 Copynumber: 2.9 Consensus size: 37
19404159 GCTCAGACGA
*
19404169 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
19404206 ACTCTCCACACGTAGTCATC-GGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
19404242 AATTTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
19404276 ATATATTTCC
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
36 34 0.52
37 31 0.48
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:19404391 original size:48 final size:48
Alignment explanation
Indices: 19404320--19404798 Score: 683
Period size: 48 Copynumber: 10.0 Consensus size: 48
19404310 TGCTACAACC
*
19404320 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
19404368 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
19404416 TTTACATT-GCCATTCGGCTTTACCACGTATACATATCTCGA-ATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCAC-ACATATAT
* *
19404463 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
**
19404511 TTCACATTAGCCATTCGGCTTTACCATGTATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * ** *
19404559 TTCACATTTGCCATTCGGCTTTACCACGTATACATATCTCGTATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
19404607 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
19404655 TTCACATTAGCCATTCGGCTTTACCACGTATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * ** * *
19404703 TTCACATTCGCCATTCGGCTTTACCACGTATACATATCTCGTATGTAA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
19404751 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
19404799 ATATTTATCT
Statistics
Matches: 383, Mismatches: 45, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
47 41 0.11
48 342 0.89
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:19404657 original size:144 final size:144
Alignment explanation
Indices: 19404320--19404798 Score: 879
Period size: 144 Copynumber: 3.3 Consensus size: 144
19404310 TGCTACAACC
*
19404320 TTCACATTAGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
* * *
19404385 ACTTTACCACATATACATATCACACATATATTTTACA-TTGCCATTCGGCTTTACCACGTATACA
66 GCTTTACCACGTATACATATCACACATATATTTCACATTTGCCATTCGGCTTTACCACGTATACA
*
19404449 TATCTCGAATGTAT
131 TATCTCGTATGTAT
19404463 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
*
19404528 GCTTTACCATGTATACATATCACACATATATTTCACATTTGCCATTCGGCTTTACCACGTATACA
66 GCTTTACCACGTATACATATCACACATATATTTCACATTTGCCATTCGGCTTTACCACGTATACA
19404593 TATCTCGTATGTAT
131 TATCTCGTATGTAT
19404607 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
*
19404672 GCTTTACCACGTATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACGTATACA
66 GCTTTACCACGTATACATATCACACATATATTTCACATTTGCCATTCGGCTTTACCACGTATACA
*
19404737 TATCTCGTATGTAA
131 TATCTCGTATGTAT
19404751 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
19404799 ATATTTATCT
Statistics
Matches: 326, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
143 97 0.30
144 229 0.70
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (144 bp):
TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATATTTCACATTAGCCATTCG
GCTTTACCACGTATACATATCACACATATATTTCACATTTGCCATTCGGCTTTACCACGTATACA
TATCTCGTATGTAT
Found at i:19410935 original size:40 final size:40
Alignment explanation
Indices: 19410850--19411000 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
19410840 AATTGAATGA
* * *
19410850 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
19410890 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
19410931 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
19410970 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
19411001 ACATGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:19418889 original size:40 final size:40
Alignment explanation
Indices: 19418823--19418971 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
19418813 AAATTGAATG
* * *
19418823 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * *
19418862 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCT---AGTGG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAAT-T
* *
19418900 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
19418940 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
19418972 ACATGTTATA
Statistics
Matches: 90, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
37 5 0.06
38 26 0.29
39 12 0.13
40 44 0.49
41 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:19418914 original size:38 final size:38
Alignment explanation
Indices: 19418863--19418971 Score: 132
Period size: 38 Copynumber: 2.8 Consensus size: 38
19418853 CTGGAAATTA
* *
19418863 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-GC
*
19418901 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAG--ATGC
*
19418941 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
19418972 ACATGTTATA
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
37 3 0.05
38 28 0.45
40 28 0.45
41 3 0.05
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATGC
Found at i:19425004 original size:40 final size:40
Alignment explanation
Indices: 19424919--19425069 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
19424909 AATTGAATGA
* * *
19424919 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
19424959 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
19425000 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
19425039 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
19425070 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:19425083 original size:40 final size:40
Alignment explanation
Indices: 19424956--19425085 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
19424946 ATGCTGGAAA
* * * *
19424956 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
19424996 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
19425036 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
19425076 TTATATCCGG
1 TTATATCCGG
19425086 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:19427754 original size:21 final size:21
Alignment explanation
Indices: 19427715--19427754 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
19427705 AACTATTCAG
*
19427715 AAGAAGAAGAAAAATAATAGT
1 AAGAAGAAGAAAAAGAATAGT
* *
19427736 AAGAAGAATAACAAGAATA
1 AAGAAGAAGAAAAAGAATA
19427755 AACTCAATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.17, T:0.12
Consensus pattern (21 bp):
AAGAAGAAGAAAAAGAATAGT
Found at i:19427843 original size:13 final size:13
Alignment explanation
Indices: 19427827--19427855 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
19427817 ATAATAACCA
19427827 AACTAAATAAAAT
1 AACTAAATAAAAT
19427840 AACTAAATAAAAT
1 AACTAAATAAAAT
19427853 AAC
1 AAC
19427856 AGTAAAGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (13 bp):
AACTAAATAAAAT
Found at i:19427936 original size:5 final size:5
Alignment explanation
Indices: 19427903--19427972 Score: 77
Period size: 5 Copynumber: 13.4 Consensus size: 5
19427893 ATGAAAAAAT
* * * *
19427903 AATAA AAGTAA AATAA AAGAA ATACAA AATAA AATAA AATAA ATTAG AATAAA
1 AATAA AA-TAA AATAA AATAA A-ATAA AATAA AATAA AATAA AATAA AAT-AA
19427956 AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AA
19427973 ATGAAAAATG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
5 42 0.76
6 13 0.24
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:19427940 original size:26 final size:24
Alignment explanation
Indices: 19427903--19427972 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 24
19427893 ATGAAAAAAT
19427903 AATAAAAGTAAAATAAAAGAAATACAA
1 AATAAAA-TAAAATAAAAG-AATA-AA
19427930 AATAAAATAAAATAAATTAGAATAAA
1 AATAAAATAAAATAAA--AGAATAAA
19427956 AATAAAATAAAATAAAA
1 AATAAAATAAAATAAAA
19427973 ATGAAAAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
24 1 0.02
26 27 0.66
27 11 0.27
28 2 0.05
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (24 bp):
AATAAAATAAAATAAAAGAATAAA
Found at i:19427946 original size:21 final size:21
Alignment explanation
Indices: 19427898--19427981 Score: 84
Period size: 21 Copynumber: 4.0 Consensus size: 21
19427888 TTAATATGAA
*
19427898 AAAAT-AATAAAAGT-AAAAT
1 AAAATAAATAAAAATAAAAAT
*
19427917 AAAAGAAATACAAAAT-AAAAT
1 AAAATAAATA-AAAATAAAAAT
* *
19427938 AAAATAAATTAGAATAAAAAT
1 AAAATAAATAAAAATAAAAAT
19427959 AAAATAAAATAAAAATGAAAAAT
1 AAAAT-AAATAAAAAT-AAAAAT
19427982 GGTAAATGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.08
20 8 0.15
21 27 0.51
22 8 0.15
23 6 0.11
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (21 bp):
AAAATAAATAAAAATAAAAAT
Found at i:19427959 original size:16 final size:16
Alignment explanation
Indices: 19427903--19427979 Score: 84
Period size: 16 Copynumber: 4.8 Consensus size: 16
19427893 ATGAAAAAAT
*
19427903 AATAAAAGTAAAATAA
1 AATAAAAATAAAATAA
* * *
19427919 AAGAAATACAAAATAA
1 AATAAAAATAAAATAA
* *
19427935 AAT-AAAATAAATTAG
1 AATAAAAATAAAATAA
19427950 AATAAAAATAAAATAA
1 AATAAAAATAAAATAA
19427966 AATAAAAATGAAAA
1 AATAAAAAT-AAAA
19427980 ATGGTAAATG
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
15 11 0.23
16 33 0.69
17 4 0.08
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.18
Consensus pattern (16 bp):
AATAAAAATAAAATAA
Found at i:19427988 original size:7 final size:7
Alignment explanation
Indices: 19427978--19428004 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
19427968 TAAAAATGAA
19427978 AAATGGT
1 AAATGGT
19427985 AAATGGT
1 AAATGGT
19427992 AAATGGT
1 AAATGGT
19427999 AAATGG
1 AAATGG
19428005 GGAGGAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (7 bp):
AAATGGT
Found at i:19429875 original size:40 final size:40
Alignment explanation
Indices: 19429696--19429914 Score: 235
Period size: 40 Copynumber: 5.5 Consensus size: 40
19429686 GCTCGATTGT
* * * * * *
19429696 CTTCGGGACATAGCCCGGTTATAGTAATTCTCACAAATGC
1 CTTCGGGACTTAACCCGGATATGGTAACTCGCACAAATGC
* * *
19429736 CTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATATGGTAACTCGCACAAATGC
* *
19429776 CTTCGGGAATTAACCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATATGGTAACTCGCACAAATGC
* * *
19429816 CTTCGGGACTTAACTCGGATTTGGGAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATATGGTAACTCGCACAAATGC
** * *
19429856 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GC
1 CTTCGGGA-CTTAACCCGGATATGGTAAC-TCGCACAAATGC
*
19429896 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAACCCGGA
19429915 CCTCATTCGA
Statistics
Matches: 151, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 137 0.91
41 11 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATATGGTAACTCGCACAAATGC
Found at i:19433610 original size:93 final size:93
Alignment explanation
Indices: 19433498--19433670 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
19433488 CGCCCATAAG
* *
19433498 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
19433563 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
19433591 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
19433656 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
19433671 CAAATATCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:19433666 original size:46 final size:46
Alignment explanation
Indices: 19433491--19433666 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
19433481 TGTAACCCGC
* *
19433491 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
19433537 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
19433587 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
19433630 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
19433667 TGCCCAAATA
Statistics
Matches: 114, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 66 0.58
47 29 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:19436077 original size:29 final size:29
Alignment explanation
Indices: 19436038--19436125 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
19436028 CAAAGATAAC
*
19436038 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
19436067 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
19436096 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
19436126 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:19436096 original size:15 final size:15
Alignment explanation
Indices: 19436038--19436116 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
19436028 CAAAGATAAC
*
19436038 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
19436052 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
19436067 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
19436081 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
19436096 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
19436111 AAGAAA
1 AAGAAA
19436117 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:19436125 original size:15 final size:15
Alignment explanation
Indices: 19436049--19436125 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
19436039 AGAAAACCGA
19436049 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
19436064 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
19436078 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
19436092 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
19436108 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
19436123 ATA
1 ATA
19436126 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:19439099 original size:46 final size:46
Alignment explanation
Indices: 19439032--19439205 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
19439022 TGTAACCCGC
19439032 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
19439078 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
19439128 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
19439171 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
19439206 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 23 0.21
46 42 0.38
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:19439152 original size:93 final size:92
Alignment explanation
Indices: 19439040--19439210 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
19439030 GCCCATAAGT
* *
19439040 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCAA
19439105 CGAGCTCGGATGCCTAGTTACATCTCAC
65 CGAGCTCGGATGCCTAGTTACATCTCAC
*
19439133 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
*
19439198 GAGTTCGGATGCC
66 GAGCTCGGATGCC
19439211 CAAATATCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 25 0.34
93 49 0.66
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCAC
Found at i:19445922 original size:45 final size:45
Alignment explanation
Indices: 19445858--19445949 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
19445848 AATGATGAAA
19445858 CATAGTCAACCAATTGACAAAATCAAATCTTGACAAAAAAGGAGT
1 CATAGTCAACCAATTGACAAAATCAAATCTTGACAAAAAAGGAGT
*
19445903 CATAGTCAACCAATTGACAAAATCAAATCTTGACAAAAAATGAGT
1 CATAGTCAACCAATTGACAAAATCAAATCTTGACAAAAAAGGAGT
19445948 CA
1 CA
19445950 ATAAAAAGGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.49, C:0.18, G:0.12, T:0.21
Consensus pattern (45 bp):
CATAGTCAACCAATTGACAAAATCAAATCTTGACAAAAAAGGAGT
Found at i:19446732 original size:22 final size:22
Alignment explanation
Indices: 19446700--19446741 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
19446690 GTTTCCAAGC
*
19446700 AAATAATAAGA-AAATAGATAG
1 AAATAATAAGATAAAGAGATAG
19446721 AAATAAATAAGATAAAGAGAT
1 AAAT-AATAAGATAAAGAGAT
19446742 TAAAAACTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 7 0.39
23 7 0.39
ACGTcount: A:0.67, C:0.00, G:0.14, T:0.19
Consensus pattern (22 bp):
AAATAATAAGATAAAGAGATAG
Found at i:19446822 original size:50 final size:51
Alignment explanation
Indices: 19446721--19446833 Score: 128
Period size: 49 Copynumber: 2.2 Consensus size: 51
19446711 AAATAGATAG
*
19446721 AAATAAATAAGATAAAGAGATTAAAAACTAGAAAAAAATTGAAACAACAAA
1 AAATAAATAAAATAAAGAGATTAAAAACTAGAAAAAAATTGAAACAACAAA
* *
19446772 ACA-AAATAAAATAAA-AGA-TATAAATCTAGAAAAAAATAT-AAA-AATCCAAA
1 AAATAAATAAAATAAAGAGATTA-AAAACTAGAAAAAAAT-TGAAACAA--CAAA
19446822 AAATAAATAAAA
1 AAATAAATAAAA
19446834 ATGAAAACAG
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
48 4 0.08
49 21 0.40
50 18 0.34
51 10 0.19
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (51 bp):
AAATAAATAAAATAAAGAGATTAAAAACTAGAAAAAAATTGAAACAACAAA
Found at i:19451199 original size:43 final size:43
Alignment explanation
Indices: 19451152--19451275 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
19451142 TCACGTATCG
* * *
19451152 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCA-TATAACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAAT-ACA
* *
19451195 ATGCCAATGTCCCAGACATGGTTTTACACGTAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATACA
* * * *
19451238 ATTCCAATATCCCAGACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA
19451276 TCTCGGTAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 69 0.97
44 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATACA
Found at i:19468218 original size:16 final size:17
Alignment explanation
Indices: 19468197--19468231 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
19468187 AAACGAAAAA
*
19468197 GAAAG-AAAGGAAAAGG
1 GAAAGAAAAGAAAAAGG
19468213 GAAAGAAAAGAAAAAGG
1 GAAAGAAAAGAAAAAGG
19468230 GA
1 GA
19468232 GAATTGAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAGAAAAAGG
Found at i:19471763 original size:30 final size:30
Alignment explanation
Indices: 19471705--19471763 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
19471695 TTTACGAGCC
* *
19471705 TAGGGGCCAAAGTGTAAATAAGTGAAAGTT
1 TAGGGGCCAAAATGTAAATAAGTAAAAGTT
* **
19471735 TAGGGGTCAAAATGTAAATTTGTAAAAGT
1 TAGGGGCCAAAATGTAAATAAGTAAAAGT
19471764 ATGAATTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCCAAAATGTAAATAAGTAAAAGTT
Found at i:19472217 original size:24 final size:24
Alignment explanation
Indices: 19472163--19472217 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
19472153 ATTTCATTTC
*
19472163 TACCATGTATTATGTGTTTTAATGT
1 TACCATGTATTATATG-TTTAATGT
*
19472188 T-TCATGTATTATATG-TTAATTGT
1 TACCATGTATTATATGTTTAA-TGT
19472211 TACCATG
1 TACCATG
19472218 AAAACATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 4 0.16
23 4 0.16
24 16 0.64
25 1 0.04
ACGTcount: A:0.25, C:0.09, G:0.15, T:0.51
Consensus pattern (24 bp):
TACCATGTATTATATGTTTAATGT
Found at i:19474712 original size:28 final size:28
Alignment explanation
Indices: 19474680--19474737 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
19474670 AGTATGTAAA
19474680 TATTAATAATCAATACATTATCATACTT
1 TATTAATAATCAATACATTATCATACTT
19474708 TATTAATAATCAATACATTATCATACTT
1 TATTAATAATCAATACATTATCATACTT
19474736 TA
1 TA
19474738 AACAAAGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (28 bp):
TATTAATAATCAATACATTATCATACTT
Found at i:19478170 original size:24 final size:24
Alignment explanation
Indices: 19478119--19478237 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
19478109 GCTTTATCAT
*
19478119 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
19478144 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
19478168 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
19478191 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
19478215 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
19478238 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:19478198 original size:47 final size:48
Alignment explanation
Indices: 19478119--19478237 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
19478109 GCTTTATCAT
*
19478119 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
19478168 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
19478215 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
19478238 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:19478312 original size:20 final size:20
Alignment explanation
Indices: 19478287--19478347 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
19478277 TTATGATTAC
19478287 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
19478307 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
19478327 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
19478347 A
1 A
19478348 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:19478422 original size:25 final size:25
Alignment explanation
Indices: 19478390--19478437 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
19478380 ATACATAAAC
* * *
19478390 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
19478415 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
19478438 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:19479696 original size:27 final size:27
Alignment explanation
Indices: 19479676--19480150 Score: 586
Period size: 27 Copynumber: 17.6 Consensus size: 27
19479666 AGGGTATTTT
*
19479676 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19479703 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
19479730 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
19479757 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
19479783 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
19479810 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
19479837 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
19479864 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
19479891 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
19479918 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19479945 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19479972 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
19479999 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
19480026 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
19480053 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
19480080 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19480107 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
19480134 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
19480151 GGAGTACTTT
Statistics
Matches: 396, Mismatches: 39, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
26 26 0.07
27 365 0.92
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:19483232 original size:24 final size:24
Alignment explanation
Indices: 19483181--19483323 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
19483171 GCTTTATCAT
*
19483181 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
19483206 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
19483230 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
19483253 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
19483277 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
19483301 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
19483324 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:19483260 original size:47 final size:48
Alignment explanation
Indices: 19483181--19483322 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
19483171 GCTTTATCAT
* *
19483181 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
19483230 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
19483277 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
19483323 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:19483281 original size:71 final size:72
Alignment explanation
Indices: 19483180--19483323 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
19483170 TGCTTTATCA
*
19483180 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
19483245 GCCCTTT
66 GCCCTTT
* * **
19483252 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
19483315 AGCCCTTT
65 AGCCCTTT
19483323 T
1 T
19483324 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:19483395 original size:20 final size:20
Alignment explanation
Indices: 19483372--19483432 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
19483362 TTATGATTAC
19483372 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
19483392 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
19483412 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
19483432 A
1 A
19483433 CATATTTATC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:19483506 original size:25 final size:25
Alignment explanation
Indices: 19483474--19483521 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
19483464 ATACATAAAC
* * *
19483474 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
19483499 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
19483522 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:19484780 original size:27 final size:27
Alignment explanation
Indices: 19484760--19485232 Score: 586
Period size: 27 Copynumber: 17.6 Consensus size: 27
19484750 AGGGTATTTT
*
19484760 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19484787 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
19484814 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
19484841 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
19484867 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
19484894 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
19484921 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
19484948 GGTAATT-TGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
19484974 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19485001 -GTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19485027 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19485054 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
19485081 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
19485108 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
19485135 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
19485162 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
19485189 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
19485216 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
19485233 GGAGTACTTT
Statistics
Matches: 396, Mismatches: 35, Indels: 30
0.86 0.08 0.07
Matches are distributed among these distances:
26 74 0.19
27 318 0.80
28 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:19488392 original size:24 final size:24
Alignment explanation
Indices: 19488319--19488453 Score: 103
Period size: 24 Copynumber: 5.5 Consensus size: 24
19488309 TTAAAGGTCT
* *
19488319 GCACACATAGTGCTCTTACTCAT-TC
1 GCACACATAGTGC-CATA-TAATCTC
* * *
19488344 GCACACATAGTGCCGTGT-TTCCTC
1 GCACACATAGTGCCATATAAT-CTC
*
19488368 GCACACATAGTGCTATATAATCTC
1 GCACACATAGTGCCATATAATCTC
* * * *
19488392 GCACACATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCCATATA-ATCTC
* * *
19488417 GCACACATAGTGCCACATAACCTT
1 GCACACATAGTGCCATATAATCTC
19488441 GCACACATAGTGC
1 GCACACATAGTGC
19488454 TGAAATTTCT
Statistics
Matches: 89, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 54 0.61
25 33 0.37
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (24 bp):
GCACACATAGTGCCATATAATCTC
Found at i:19488421 original size:49 final size:47
Alignment explanation
Indices: 19488318--19488453 Score: 141
Period size: 49 Copynumber: 2.8 Consensus size: 47
19488308 TTTAAAGGTC
* *
19488318 TGCACACATAGTGCTCT-TACTCATTCGCACACATAGTGCCGTGTTTCCT
1 TGCACACATAGTGCTATATAATC--TCGCACACATAGTGCCGTGTTT-CT
*
19488367 CGCACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTT-T
1 TGCACACATAGTGCTATATAATCTCGCACACATAGTGCC--GT-GTTTCT
* * * *
19488416 TGCACACATAGTGCCACATAACCTTGCACACATAGTGC
1 TGCACACATAGTGCTATATAATCTCGCACACATAGTGC
19488454 TGAAATTTCT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
48 16 0.21
49 49 0.65
50 6 0.08
51 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (47 bp):
TGCACACATAGTGCTATATAATCTCGCACACATAGTGCCGTGTTTCT
Found at i:19489253 original size:2 final size:2
Alignment explanation
Indices: 19489246--19489274 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
19489236 TCATAGTTGA
19489246 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19489275 CTTTGTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:19492961 original size:40 final size:40
Alignment explanation
Indices: 19492902--19493043 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
19492892 AAATTGAATG
* * *
19492902 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
19492942 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
19492982 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
19493022 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
19493044 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:19493044 original size:40 final size:39
Alignment explanation
Indices: 19492941--19493069 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
19492931 TGCTGGAAAT
* * *
19492941 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
19492981 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
19493021 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
19493061 TATATCCGG
1 TATATCCGG
19493070 TTATATTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:19494918 original size:57 final size:58
Alignment explanation
Indices: 19494816--19494929 Score: 158
Period size: 57 Copynumber: 2.0 Consensus size: 58
19494806 GAAAATGGAT
* * *
19494816 AAATGGGAAACATTTGGAAATGAAATGTCGTTTTCTCTAAAATGAAAACCAAAATAAA
1 AAATGGGAAACAATTGGAAATGAAATGTCGTTTTCCCTAAAATGAAAACAAAAATAAA
* * * *
19494874 AAATTGGAAACAATTGGAAATG-AATGTGGTTTTCCCTGAAATGAAAATAAAAATAA
1 AAATGGGAAACAATTGGAAATGAAATGTCGTTTTCCCTAAAATGAAAACAAAAATAA
19494930 CCTAAAAATG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 29 0.59
58 20 0.41
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (58 bp):
AAATGGGAAACAATTGGAAATGAAATGTCGTTTTCCCTAAAATGAAAACAAAAATAAA
Found at i:19503473 original size:40 final size:39
Alignment explanation
Indices: 19503429--19503609 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
19503419 GTTCAAAACA
* * ** * *
19503429 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
19503469 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
19503509 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
19503548 CCTTCGGGCTTAGCCC-GATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
19503586 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
19503610 CTCGAACATT
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 35 0.28
39 51 0.40
40 40 0.32
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:19503579 original size:38 final size:39
Alignment explanation
Indices: 19503459--19503610 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
19503449 TATGGTAACC
* *
19503459 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
19503499 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
19503538 CGCACAATTGCCTTCGGGCTTAGCCC-GATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
19503576 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
19503611 TCGAACATTC
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 35 0.34
39 52 0.50
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:19503589 original size:77 final size:79
Alignment explanation
Indices: 19503459--19503609 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
19503449 TATGGTAACC
19503459 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
19503524 CGGATATCATAGCT
66 CGGATATCATAGCT
* * *
19503538 CGCACAATTGCCTTCGGG-CTTAGCCC-GATATCACAATTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
19503601 CGGATATCA
66 CGGATATCA
19503610 CTCGAACATT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 45 0.65
78 7 0.10
79 17 0.25
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:19511548 original size:40 final size:39
Alignment explanation
Indices: 19511504--19511646 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
19511494 GTTCAAAACA
* * ** * *
19511504 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
19511544 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
19511584 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
19511623 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
19511647 CTCGAACATT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:19516744 original size:13 final size:13
Alignment explanation
Indices: 19516726--19516750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19516716 AGAAAGGTGA
19516726 TTAGGTTTCAATC
1 TTAGGTTTCAATC
19516739 TTAGGTTTCAAT
1 TTAGGTTTCAAT
19516751 TTAAGAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (13 bp):
TTAGGTTTCAATC
Found at i:19517635 original size:40 final size:40
Alignment explanation
Indices: 19517591--19517776 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
19517581 TCTACTCGTT
*
19517591 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
19517631 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
19517671 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
19517711 CGAATGCCTTC-GGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
19517752 CAAA-GCCTTCAGGACTGAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19517777 CATCATTCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 12 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:19520596 original size:23 final size:23
Alignment explanation
Indices: 19520509--19520606 Score: 97
Period size: 23 Copynumber: 4.3 Consensus size: 23
19520499 GTGAAGCTTG
* *
19520509 TGTGGCATATTTTGTAAAGCCTA
1 TGTGGCATATTCTATAAAGCCTA
* * *
19520532 TATAGCGTATTCTATAAAGCCTA
1 TGTGGCATATTCTATAAAGCCTA
* ** * *
19520555 TATGGCATACCCTGTAAAGCCTG
1 TGTGGCATATTCTATAAAGCCTA
*
19520578 TGTGGCATATTCTACAAAGCCTA
1 TGTGGCATATTCTATAAAGCCTA
19520601 TGTGGC
1 TGTGGC
19520607 GCCTTTTGTA
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (23 bp):
TGTGGCATATTCTATAAAGCCTA
Found at i:19527093 original size:42 final size:42
Alignment explanation
Indices: 19526988--19527125 Score: 145
Period size: 44 Copynumber: 3.2 Consensus size: 42
19526978 TGTGTTATCA
* *
19526988 TGTAAGACCATGTCTGGGACATTGGTATCG-ACTTATGATTTACG
1 TGTAAGACCCTGTCTGGGACACTGGTATCGTA-TT-TGATTT-CG
* *
19527032 TATAAGACCAC-GTCTGGGACACTAGTATCGTATTTGATTTCG
1 TGTAAGACC-CTGTCTGGGACACTGGTATCGTATTTGATTTCG
* * * *
19527074 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTGGGACACTGGTATCG-TATTTGATTTCG
19527117 TGTAAGACC
1 TGTAAGACC
19527126 ACGTCTAGGA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.32
43 25 0.31
44 27 0.34
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACACTGGTATCGTATTTGATTTCG
Found at i:19527109 original size:43 final size:43
Alignment explanation
Indices: 19526988--19527144 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
19526978 TGTGTTATCA
* * *
19526988 TGTAAGACCATGTCTGGGACATTGGTATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGATTT-CG
* * * *
19527032 TATAAGACCACGTCTGGGACACTAGTATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCG
* * *
19527074 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTTCG
*
19527117 TGTAAGACCACGTCTAGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
19527145 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 41 0.43
44 27 0.28
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTCG
Found at i:19531828 original size:33 final size:33
Alignment explanation
Indices: 19531791--19532032 Score: 227
Period size: 33 Copynumber: 7.4 Consensus size: 33
19531781 AAATGGTACA
**
19531791 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * * *
19531824 ATTTGAAAAGGAAAGGTACACTATATGTGTA-C
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* ** * * *
19531856 ACTTGAAAAGGTCATGTACACTTTGTGTGTA-C
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * ** *
19531888 ACTTGGAAAGGTTAGGTATACTTTGTGTACACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
19531921 ATATGAAAAGGAACGGTATACTTTGTGTATAAC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
19531954 ATATGAAAAGGAAAGGTATACTTTGTTTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
19531987 ATATGAAAAGGAAAGGTATACTTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
19532020 ACTTGGAAAGGAA
1 ATTTGAAAAGGAA
19532033 TGTACACCTC
Statistics
Matches: 173, Mismatches: 35, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
32 52 0.30
33 121 0.70
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.32
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:19531875 original size:32 final size:32
Alignment explanation
Indices: 19531839--19531899 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
19531829 AAAAGGAAAG
19531839 GTACACTATATGTGTACACTTGAAAAGGTCAT
1 GTACACTATATGTGTACACTTGAAAAGGTCAT
* * *
19531871 GTACACTTTGTGTGTACACTTGGAAAGGT
1 GTACACTATATGTGTACACTTGAAAAGGT
19531900 TAGGTATACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (32 bp):
GTACACTATATGTGTACACTTGAAAAGGTCAT
Found at i:19538131 original size:143 final size:141
Alignment explanation
Indices: 19537923--19538217 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
19537913 TGAGTTAAAT
*
19537923 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
19537988 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
19538053 GTGTGCATGAGTA
129 GTGTGCATGAGTA
19538066 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
19538131 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
19538196 GTGCATGAGTA
131 GTGCATGAGTA
19538207 TTCGGCCATGC
1 TTCGGCCATGC
19538218 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:19538895 original size:29 final size:29
Alignment explanation
Indices: 19538862--19538954 Score: 132
Period size: 29 Copynumber: 3.2 Consensus size: 29
19538852 TGACGAGATT
* * *
19538862 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
19538891 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
* * *
19538920 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
19538949 GGCACT
1 GGCACT
19538955 GGGTGTGCGA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:19538967 original size:29 final size:29
Alignment explanation
Indices: 19538862--19538967 Score: 124
Period size: 29 Copynumber: 3.7 Consensus size: 29
19538852 TGACGAGATT
* * *
19538862 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAC
19538891 GGCACTAAGTGTGC-ATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAC
* * *
19538920 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAC
**
19538949 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
19538968 CGAAGGGTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 65 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAC
Found at i:19541834 original size:43 final size:43
Alignment explanation
Indices: 19541775--19541884 Score: 150
Period size: 48 Copynumber: 2.4 Consensus size: 43
19541765 ACGGCTATTA
19541775 AAATGGCACTGA-GTGTGCGAGATTATAACAGCATTGGCTGAGT
1 AAATGGCACT-ATGTGTGCGAGATTATAACAGCATTGGCTGAGT
*
19541818 AAATGGCACTATGTGTGCGGTGCGAGATTATAACAGCGTTGGCTGAGT
1 AAATGGCACTA--TGT---GTGCGAGATTATAACAGCATTGGCTGAGT
19541866 AAATGGCACTATGTGTGCG
1 AAATGGCACTATGTGTGCG
19541885 GCACCGATAT
Statistics
Matches: 60, Mismatches: 1, Indels: 12
0.82 0.01 0.16
Matches are distributed among these distances:
42 1 0.02
43 15 0.25
45 2 0.03
46 3 0.05
48 39 0.65
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (43 bp):
AAATGGCACTATGTGTGCGAGATTATAACAGCATTGGCTGAGT
Found at i:19541853 original size:48 final size:48
Alignment explanation
Indices: 19541789--19541885 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
19541779 GGCACTGAGT
19541789 GTGCGAGATTATAACAGCATTGGCTGAGTAAATGGCACTATGTGTGCG
1 GTGCGAGATTATAACAGCATTGGCTGAGTAAATGGCACTATGTGTGCG
*
19541837 GTGCGAGATTATAACAGCGTTGGCTGAGTAAATGGCACTATGTGTGCG
1 GTGCGAGATTATAACAGCATTGGCTGAGTAAATGGCACTATGTGTGCG
19541885 G
1 G
19541886 CACCGATATA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (48 bp):
GTGCGAGATTATAACAGCATTGGCTGAGTAAATGGCACTATGTGTGCG
Found at i:19544325 original size:13 final size:15
Alignment explanation
Indices: 19544296--19544327 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
19544286 GAGAAAAGTT
19544296 GATTCAGAAGCAAGA
1 GATTCAGAAGCAAGA
19544311 GATTC-GAAG-AAGA
1 GATTCAGAAGCAAGA
19544324 GATT
1 GATT
19544328 GATGAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (15 bp):
GATTCAGAAGCAAGA
Found at i:19549524 original size:12 final size:12
Alignment explanation
Indices: 19549504--19549534 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
19549494 TTGAGGGTTG
19549504 TGAGGAGAGATT
1 TGAGGAGAGATT
*
19549516 TGGGGAGAGATT
1 TGAGGAGAGATT
19549528 TGAGGAG
1 TGAGGAG
19549535 GGGATCATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (12 bp):
TGAGGAGAGATT
Found at i:19551303 original size:34 final size:34
Alignment explanation
Indices: 19551259--19551359 Score: 184
Period size: 34 Copynumber: 3.0 Consensus size: 34
19551249 TGCATTTCTG
19551259 TTACTATTACTGTAATGGGCTAAGGCCCACACTA
1 TTACTATTACTGTAATGGGCTAAGGCCCACACTA
*
19551293 TTACTGTTACTGTAATGGGCTAAGGCCCACACTA
1 TTACTATTACTGTAATGGGCTAAGGCCCACACTA
*
19551327 TTACTATTACTGTAATGGGCTTAGGCCCACACT
1 TTACTATTACTGTAATGGGCTAAGGCCCACACT
19551360 GATACTGGAC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (34 bp):
TTACTATTACTGTAATGGGCTAAGGCCCACACTA
Found at i:19552296 original size:17 final size:17
Alignment explanation
Indices: 19552274--19552317 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
19552264 AATTAATTGG
*
19552274 CACTAAGTGTGCGAGTT
1 CACTAAATGTGCGAGTT
19552291 CACTAAATGTGCGAGTT
1 CACTAAATGTGCGAGTT
19552308 CACTAAATGT
1 CACTAAATGT
19552318 TTAAGGATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (17 bp):
CACTAAATGTGCGAGTT
Found at i:19554857 original size:26 final size:26
Alignment explanation
Indices: 19554828--19554881 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
19554818 ATATAGTTCA
19554828 TACAATGCCATATGCCAGATATGGTC
1 TACAATGCCATATGCCAGATATGGTC
19554854 TACAATGCCATATGCCAGATATGGTC
1 TACAATGCCATATGCCAGATATGGTC
19554880 TA
1 TA
19554882 ACATGTTATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (26 bp):
TACAATGCCATATGCCAGATATGGTC
Found at i:19560526 original size:29 final size:29
Alignment explanation
Indices: 19560494--19560551 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
19560484 TATACTATGG
19560494 TTACTAACTTATCCATCAAGCACTCATGT
1 TTACTAACTTATCCATCAAGCACTCATGT
19560523 TTACTAACTTATCCATCAAGCACTCATGT
1 TTACTAACTTATCCATCAAGCACTCATGT
19560552 CCAACCATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (29 bp):
TTACTAACTTATCCATCAAGCACTCATGT
Found at i:19562513 original size:28 final size:28
Alignment explanation
Indices: 19562477--19562534 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
19562467 CTTGTCATGG
19562477 ATCAACATTTTCTTACATTTCATGTAAT
1 ATCAACATTTTCTTACATTTCATGTAAT
19562505 ATCAACATTTTCTTACATTTCATGTAAT
1 ATCAACATTTTCTTACATTTCATGTAAT
19562533 AT
1 AT
19562535 TCTTCGATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (28 bp):
ATCAACATTTTCTTACATTTCATGTAAT
Found at i:19562634 original size:2 final size:2
Alignment explanation
Indices: 19562585--19562620 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
19562575 CAACTCTTCC
19562585 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19562621 ATCATACAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:19563857 original size:33 final size:33
Alignment explanation
Indices: 19563820--19563895 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
19563810 TACTTTCTAT
* *
19563820 TTGGTGTGCTGGTTGGATTCGCTCTTATAAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATAAGCA
*
19563853 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATAAGCA
19563886 TTGGTGTGAT
1 TTGGTGTGAT
19563896 AGAGGGATTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.16, C:0.11, G:0.33, T:0.41
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATAAGCA
Found at i:19563904 original size:33 final size:33
Alignment explanation
Indices: 19563834--19563909 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
19563824 TGTGCTGGTT
* * **
19563834 GGATTCGCTCTTATAAGCATTGGTGTGATGGTT
1 GGATTAGCTCTTATAAGCATTGGTGTGATAGAG
*
19563867 GGATTAGCTCTTATGAGCATTGGTGTGATAGAG
1 GGATTAGCTCTTATAAGCATTGGTGTGATAGAG
*
19563900 GGATTGGCTC
1 GGATTAGCTC
19563910 GAGTGAGCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.20, C:0.12, G:0.33, T:0.36
Consensus pattern (33 bp):
GGATTAGCTCTTATAAGCATTGGTGTGATAGAG
Found at i:19563917 original size:33 final size:33
Alignment explanation
Indices: 19563834--19563919 Score: 84
Period size: 33 Copynumber: 2.6 Consensus size: 33
19563824 TGTGCTGGTT
* * * * **
19563834 GGATTCGCTCTTATAAGCATTGGTGTGATGGTT
1 GGATTAGCTCTGATGAGCATTGGTGTGATAGAG
*
19563867 GGATTAGCTCTTATGAGCATTGGTGTGATAGAG
1 GGATTAGCTCTGATGAGCATTGGTGTGATAGAG
*
19563900 GGATTGGCTC-GAGTGAGCAT
1 GGATTAGCTCTGA-TGAGCAT
19563920 CTTGTGTGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 1 0.02
33 44 0.98
ACGTcount: A:0.21, C:0.12, G:0.34, T:0.34
Consensus pattern (33 bp):
GGATTAGCTCTGATGAGCATTGGTGTGATAGAG
Found at i:19564592 original size:23 final size:23
Alignment explanation
Indices: 19564558--19564602 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
19564548 GGTTGAATTA
19564558 ATGTTATGTTTTGGTATAAATGT
1 ATGTTATGTTTTGGTATAAATGT
*
19564581 ATGTATAT-TTTTGGTATCAATG
1 ATGT-TATGTTTTGGTATAAATG
19564603 AGGGTACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (23 bp):
ATGTTATGTTTTGGTATAAATGT
Found at i:19565553 original size:8 final size:9
Alignment explanation
Indices: 19565517--19565550 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
19565507 TTAATTGGGA
19565517 AATTAATTT
1 AATTAATTT
*
19565526 AGTTAATTT
1 AATTAATTT
19565535 AATTAA-TT
1 AATTAATTT
19565543 AATTAATT
1 AATTAATT
19565551 AATATTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (9 bp):
AATTAATTT
Found at i:19567651 original size:26 final size:26
Alignment explanation
Indices: 19567622--19567729 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
19567612 TGATACAAAT
19567622 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
19567648 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTCCA
19567674 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19567700 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19567726 TGAT
1 TGAT
19567730 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:19569359 original size:27 final size:26
Alignment explanation
Indices: 19569311--19569475 Score: 186
Period size: 27 Copynumber: 6.1 Consensus size: 26
19569301 AGGAAGCGTC
* * *
19569311 CTGGTGGCTATGCCGCAAATATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* * *
19569338 CTGATGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
19569365 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
19569392 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
19569419 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
19569447 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
19569473 CTG
1 CTG
19569476 TCAGCCATGC
Statistics
Matches: 119, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
26 7 0.06
27 93 0.78
28 19 0.16
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:19569393 original size:54 final size:54
Alignment explanation
Indices: 19569311--19569475 Score: 242
Period size: 54 Copynumber: 3.1 Consensus size: 54
19569301 AGGAAGCGTC
* * * * * *
19569311 CTGGTGGCTATGCCGCAAATATCTGATCTGATGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
19569365 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
19569419 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
19569473 CTG
1 CTG
19569476 TCAGCCATGC
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 84 0.82
55 18 0.18
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:19569467 original size:81 final size:81
Alignment explanation
Indices: 19569311--19569475 Score: 217
Period size: 81 Copynumber: 2.0 Consensus size: 81
19569301 AGGAAGCGTC
* * *
19569311 CTGGTGGCTATGCCGCAAATATCTGATCTGATGGTTCTGCCACATATATCTGTTCTGGTGGCTCT
1 CTGGTGGCTATGCCACAAATATCTGATCTGATGGCTCTGCCACATATATCTGTTCTGGTGACTCT
19569376 GCCACGATTATCTGAT
66 GCCACGATTATCTGAT
* * * *
19569392 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAATATCTGATCTGATGGCTCTGCCAC-ATATATCTGT-TCTGGTGACT
* *
19569456 CTGTCAC-ATTATCTGTT
64 CTGCCACGATTATCTGAT
19569473 CTG
1 CTG
19569476 TCAGCCATGC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 56 0.77
82 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGATGGCTCTGCCACATATATCTGTTCTGGTGACTCT
GCCACGATTATCTGAT
Found at i:19569492 original size:81 final size:82
Alignment explanation
Indices: 19569311--19569498 Score: 199
Period size: 81 Copynumber: 2.3 Consensus size: 82
19569301 AGGAAGCGTC
* * * * *
19569311 CTGGTGGCT-ATGCCGCAAATATCTGATCTGATGGTTCTGCCACATATATCTGTTCTGGTGGCTC
1 CTGGTAGCTCATGCCGCATATATCTGTTCTGATGGCTCTGCCACATATATCTGTTCTGGTGACTC
19569375 TGCCACGATTATCTGAT
66 TGCCACGATTATCTGAT
* * *
19569392 CTGGTGGCTC-TGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGAC
1 CTGGTAGCTCATGCCGCATATATCTGTTCTGATGGCTCTGCCAC-ATATATCTGT-TCTGGTGAC
* *
19569455 TCTGTCAC-ATTATCTGTT
64 TCTGCCACGATTATCTGAT
* *
19569473 CT-GTCAGC-CATGCTGCATATTTCTGT
1 CTGGT-AGCTCATGCCGCATATATCTGT
19569499 GGTGTGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
80 3 0.03
81 70 0.78
82 17 0.19
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.37
Consensus pattern (82 bp):
CTGGTAGCTCATGCCGCATATATCTGTTCTGATGGCTCTGCCACATATATCTGTTCTGGTGACTC
TGCCACGATTATCTGAT
Found at i:19571618 original size:24 final size:24
Alignment explanation
Indices: 19571590--19571636 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
19571580 ACCTTAAACC
19571590 TTAAATATTAGATTT-TTTAAAAGT
1 TTAAATATT-GATTTGTTTAAAAGT
*
19571614 TTAAATATTGATTTGTTTGAAAG
1 TTAAATATTGATTTGTTTAAAAG
19571637 AAAATCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (24 bp):
TTAAATATTGATTTGTTTAAAAGT
Found at i:19578652 original size:9 final size:9
Alignment explanation
Indices: 19578640--19578672 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
19578630 GAATTATTCG
19578640 AATCGAGTT
1 AATCGAGTT
19578649 AATCGAGTT
1 AATCGAGTT
*
19578658 AATCGAATT
1 AATCGAGTT
19578667 AATCGA
1 AATCGA
19578673 ATCAACTCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (9 bp):
AATCGAGTT
Found at i:19578673 original size:9 final size:9
Alignment explanation
Indices: 19578640--19578685 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
19578630 GAATTATTCG
*
19578640 AATCGAGTT
1 AATCGAATT
*
19578649 AATCGAGTT
1 AATCGAATT
19578658 AATCGAATT
1 AATCGAATT
*
19578667 AATCGAATC
1 AATCGAATT
19578676 AACTCGAATT
1 AA-TCGAATT
19578686 TTTTTTTCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (9 bp):
AATCGAATT
Found at i:19579077 original size:24 final size:24
Alignment explanation
Indices: 19579048--19579095 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
19579038 TTATTCAAAC
19579048 CCCTTACCCCCCATTTCAACGAAA
1 CCCTTACCCCCCATTTCAACGAAA
*
19579072 CCCTTACCCCCCATTTCTACGAAA
1 CCCTTACCCCCCATTTCAACGAAA
19579096 GACGAAACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.46, G:0.04, T:0.23
Consensus pattern (24 bp):
CCCTTACCCCCCATTTCAACGAAA
Found at i:19591704 original size:36 final size:36
Alignment explanation
Indices: 19591612--19591723 Score: 125
Period size: 36 Copynumber: 3.1 Consensus size: 36
19591602 AGTTTCATTT
* * *
19591612 AGTAACATTTAATTATTCAGTAGCAATTAGTTATTC
1 AGTAACAATCAATTATTCAGTAGCAATCAGTTATTC
* ** *
19591648 AGTAACAATCATTTGCTCAGTAGCAATCAATTATTC
1 AGTAACAATCAATTATTCAGTAGCAATCAGTTATTC
* * * *
19591684 AGTAACGATCAATTATTCAGTAACAGTCAGTCATTC
1 AGTAACAATCAATTATTCAGTAGCAATCAGTTATTC
19591720 AGTA
1 AGTA
19591724 CTTTTATTTA
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 61 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (36 bp):
AGTAACAATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:19591706 original size:18 final size:18
Alignment explanation
Indices: 19591612--19591723 Score: 107
Period size: 18 Copynumber: 6.2 Consensus size: 18
19591602 AGTTTCATTT
* *
19591612 AGTAACATTTAATTATTC
1 AGTAACAATCAATTATTC
* * *
19591630 AGTAGCAATTAGTTATTC
1 AGTAACAATCAATTATTC
* **
19591648 AGTAACAATCATTTGCTC
1 AGTAACAATCAATTATTC
*
19591666 AGTAGCAATCAATTATTC
1 AGTAACAATCAATTATTC
*
19591684 AGTAACGATCAATTATTC
1 AGTAACAATCAATTATTC
* * *
19591702 AGTAACAGTCAGTCATTC
1 AGTAACAATCAATTATTC
19591720 AGTA
1 AGTA
19591724 CTTTTATTTA
Statistics
Matches: 76, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 76 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
AGTAACAATCAATTATTC
Found at i:19592803 original size:27 final size:27
Alignment explanation
Indices: 19592773--19592826 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
19592763 TCCCTAATTC
*
19592773 ATCTTTTTGTTCAACATGAACTATGTT
1 ATCTTTTTGTTCAACATAAACTATGTT
*
19592800 ATCTTTTTGTTCAACATAAATTATGTT
1 ATCTTTTTGTTCAACATAAACTATGTT
19592827 CAACAACCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.50
Consensus pattern (27 bp):
ATCTTTTTGTTCAACATAAACTATGTT
Found at i:19592993 original size:19 final size:18
Alignment explanation
Indices: 19592967--19593038 Score: 56
Period size: 18 Copynumber: 3.7 Consensus size: 18
19592957 AGTTTTTCCT
*
19592967 TTTCTTTTATTTTTCTCC
1 TTTCTTTTTTTTTTCTCC
*
19592985 TTTCTTTTTTCCTTTC-CC
1 TTTCTTTTTT-TTTTCTCC
19593003 GTTTTGCTTTTTGTTCTTTCTCC
1 --TTT-CTTTTT-TT-TTTCTCC
19593026 TTTCTTTTCTTTT
1 TTTCTTTT-TTTT
19593039 GTTTCTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 15
0.70 0.05 0.25
Matches are distributed among these distances:
18 11 0.26
19 5 0.12
20 10 0.23
21 10 0.23
22 5 0.12
23 2 0.05
ACGTcount: A:0.01, C:0.24, G:0.04, T:0.71
Consensus pattern (18 bp):
TTTCTTTTTTTTTTCTCC
Found at i:19593067 original size:2 final size:2
Alignment explanation
Indices: 19593060--19593091 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
19593050 CCTGTATAAC
19593060 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19593092 TAGTTTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.