Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 78 of 410
Found at i:22384352 original size:19 final size:16
Alignment explanation
Indices: 22384328--22384371 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 16
22384318 TATATTAAAT
22384328 TTTAATTAAATCCAATTAA
1 TTTAATTAAA-CC-ATT-A
22384347 TTTAATT-AACCATTA
1 TTTAATTAAACCATTA
22384362 TTTAATTAAA
1 TTTAATTAAA
22384372 AAATTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.33
16 5 0.21
17 2 0.08
18 2 0.08
19 7 0.29
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAATTAAACCATTA
Found at i:22387037 original size:27 final size:28
Alignment explanation
Indices: 22387007--22387147 Score: 213
Period size: 27 Copynumber: 5.2 Consensus size: 28
22386997 GTGATGAAGT
22387007 CACCAGATACAGAT-ATTGTGGCAGAGC
1 CACCAGATACAGATAATTGTGGCAGAGC
22387034 CACCAGA-ACAGAT-ATATGTGGCAGAGC
1 CACCAGATACAGATAAT-TGTGGCAGAGC
*
22387061 CACCAGAT-CAGATAATCGTGGCAGAGC
1 CACCAGATACAGATAATTGTGGCAGAGC
22387088 CACCAGA-ACAGATAATTGTGGCAGAGC
1 CACCAGATACAGATAATTGTGGCAGAGC
*
22387115 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGATAATTGTGGCAGAGC
22387142 CACCAG
1 CACCAG
22387148 GACGCTTCCT
Statistics
Matches: 106, Mismatches: 3, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
26 8 0.08
27 96 0.91
28 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (28 bp):
CACCAGATACAGATAATTGTGGCAGAGC
Found at i:22388788 original size:26 final size:26
Alignment explanation
Indices: 22388758--22388839 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
22388748 TGAAATTCCC
*
22388758 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
22388784 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
22388810 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
22388836 ATCA
1 ATCA
22388840 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:22393519 original size:22 final size:22
Alignment explanation
Indices: 22393481--22393525 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
22393471 TGAAAATCAC
22393481 GTTTTTCATAAATTTTTTTTTT
1 GTTTTTCATAAATTTTTTTTTT
* *
22393503 GTTTTTGA-AAATCTTTTTTTT
1 GTTTTTCATAAATTTTTTTTTT
22393524 GT
1 GT
22393526 AAACCCATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.18, C:0.04, G:0.09, T:0.69
Consensus pattern (22 bp):
GTTTTTCATAAATTTTTTTTTT
Found at i:22394540 original size:27 final size:27
Alignment explanation
Indices: 22394510--22394650 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
22394500 ATGACGAAGT
22394510 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
22394537 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* * *
22394564 CACCAGAT-CAGATAATCGTGGTACAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
22394591 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
22394618 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
22394645 CACCAG
1 CACCAG
22394651 GACGCTTCCT
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.10
27 86 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:22394592 original size:54 final size:54
Alignment explanation
Indices: 22394510--22394650 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
22394500 ATGACGAAGT
*
22394510 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCACAGCCACCAGAACAGATATATGTGGCAGAGC
* *
22394564 CACCAGATCAGATAATCGTGGTACAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCACAGCCACCAGAACAGATATATGTGGCAGAGC
*
22394618 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCACAGCCACCAG
22394651 GACGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCACAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:22396300 original size:26 final size:26
Alignment explanation
Indices: 22396270--22396377 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
22396260 TGAAATTCCC
*
22396270 ATCATGGAACCTTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22396296 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
22396322 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22396348 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22396374 ATCA
1 ATCA
22396378 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:22400051 original size:27 final size:28
Alignment explanation
Indices: 22400020--22400072 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
22400010 AGCACAATTT
22400020 GGGCCTAAGCCC-TTTCAGTAACAGTTA
1 GGGCCTAAGCCCATTTCAGTAACAGTTA
*
22400047 GGGCCTTAGCCCATTTCAGTAACAGT
1 GGGCCTAAGCCCATTTCAGTAACAGT
22400073 AGCGATTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (28 bp):
GGGCCTAAGCCCATTTCAGTAACAGTTA
Found at i:22411192 original size:50 final size:50
Alignment explanation
Indices: 22411062--22411213 Score: 200
Period size: 50 Copynumber: 3.0 Consensus size: 50
22411052 TATATGTAGC
* * *
22411062 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAACT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGAT-AGT
* * * *
22411113 TCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGT
1 T-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGT
22411163 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGT
22411213 T
1 T
22411214 TGGCTACATA
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
49 1 0.01
50 49 0.56
51 36 0.41
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGT
Found at i:22415019 original size:40 final size:40
Alignment explanation
Indices: 22414955--22415179 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
22414945 CAATTGAGGA
* * *
22414955 TTATATCCGGGTTAAGTCCTGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
22414995 CTATTTCCGGGTTAACTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
22415035 TTATTCCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** *
22415075 TTATTTCTAGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
22415115 CTATTTCTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
22415155 TTACATCCGGGCTAAATCCCGAAGG
1 TTATTTCCGGGTTAAGTCCCGAAGG
22415180 TAATTGGGTT
Statistics
Matches: 163, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 163 1.00
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:22415177 original size:120 final size:120
Alignment explanation
Indices: 22414964--22415179 Score: 353
Period size: 120 Copynumber: 1.8 Consensus size: 120
22414954 ATTATATCCG
*
22414964 GGTTAAGTCCTGAAGGCATTCATGCTGGTTGCTATTTCCGGGTTAACTCCCGAAGGCATTCGTGC
1 GGTTAAGTCCCGAAGGCATTCATGCTGGTTGCTATTTCCGGGTTAACTCCCGAAGGCATTCGTGC
* * *
22415029 TGGTTGTTATTCCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCTA
66 TGGTTGTTAATCCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTTGTTATTTCTA
* * *
22415084 GGTTAAGTCCCGAAGGCATTCATGCTGGTTGCTATTTCTGGGTTAAGTCCCGAAGGCATTTGTGC
1 GGTTAAGTCCCGAAGGCATTCATGCTGGTTGCTATTTCCGGGTTAACTCCCGAAGGCATTCGTGC
22415149 TGGTTGTTACAT-CCGGGCTAAATCCCGAAGG
66 TGGTTGTTA-ATCCCGGGCTAAATCCCGAAGG
22415180 TAATTGGGTT
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
120 87 0.99
121 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (120 bp):
GGTTAAGTCCCGAAGGCATTCATGCTGGTTGCTATTTCCGGGTTAACTCCCGAAGGCATTCGTGC
TGGTTGTTAATCCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTTGTTATTTCTA
Found at i:22434496 original size:41 final size:41
Alignment explanation
Indices: 22434311--22434484 Score: 160
Period size: 41 Copynumber: 4.2 Consensus size: 41
22434301 CGACTCTTAG
* *
22434311 CACTAGCTCAAAAGCCCTTTGAGACCAAGCTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG-TTATGAC
** *
22434352 CACTGGCTCGCAGGCCCTTCG-GAACCAAG-TCCGGTTATGA-
1 CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGTTATGAC
* * * * *
22434392 CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGGTTATGAC
*
22434435 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-AAC
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG-TTATGAC
22434476 CACTGGCTC
1 CACTGGCTC
22434485 GCAGGCCCTT
Statistics
Matches: 108, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
40 14 0.13
41 59 0.55
42 25 0.23
43 10 0.09
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGTTATGAC
Found at i:22436488 original size:40 final size:39
Alignment explanation
Indices: 22436434--22436587 Score: 170
Period size: 40 Copynumber: 3.9 Consensus size: 39
22436424 ATCTTTGGGA
*
22436434 CTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGT
*
22436473 CTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGGAT
1 CTTAGCCCGGATATAG-CACTAGCACAAATGCCTTCGGG-T
* * *
22436514 -TTAGCCCCGATATAATCACTAGCACAAATGCCTTCGGGA
1 CTTAGCCCGGATAT-AGCACTAGCACAAATGCCTTCGGGT
* *
22436553 CTTAGCCCAGG-TATAGTAACTTGCACAAATGCCTT
1 CTTAGCCC-GGATATAG-CACTAGCACAAATGCCTT
22436588 GTGACAGCCC
Statistics
Matches: 98, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
39 6 0.06
40 88 0.90
41 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
CTTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGT
Found at i:22438318 original size:28 final size:28
Alignment explanation
Indices: 22438249--22438349 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
22438239 GACAAGATTG
* * * *
22438249 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
22438279 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22438307 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
22438336 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22438350 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22446244 original size:28 final size:28
Alignment explanation
Indices: 22446175--22446275 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
22446165 GACAAGATTG
* * * *
22446175 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
22446205 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22446233 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
22446262 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22446276 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22449693 original size:40 final size:40
Alignment explanation
Indices: 22449635--22449802 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
22449625 TCCTCAGGAT
*
22449635 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
22449674 TTAGCCCGGATGTAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
22449714 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
22449754 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
22449794 TTAGTCCGG
1 TTAGCCCGG
22449803 TTATCATCCG
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.05
40 102 0.93
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:22460164 original size:41 final size:40
Alignment explanation
Indices: 22460102--22460289 Score: 136
Period size: 41 Copynumber: 4.6 Consensus size: 40
22460092 AGTCCGACTC
**
22460102 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCGCAAGCCCTTCGAGACCAAGCTCGGA
* * *
22460141 TTAGACCACTAGCTCGCAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGA-CACTGGCTCGCAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
22460181 TTATGACACTGGCTC-CAAAAAGCCCTTCGAAACCAAGTTCGGCTC
1 TTA-GACACTGGCTCGC---AAGCCCTTCGAGACCAAGCTCGG--A
**
22460226 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCGCAAGCCCTTCGAGACCAAGCTCGGA
* *
22460265 TTAAACCACTGGCTCGCAGGCCCTT
1 TTAGA-CACTGGCTCGCAAGCCCTT
22460290 TGGAACTAAG
Statistics
Matches: 116, Mismatches: 17, Indels: 30
0.71 0.10 0.18
Matches are distributed among these distances:
39 8 0.07
40 13 0.11
41 64 0.55
42 17 0.15
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.26, C:0.32, G:0.22, T:0.20
Consensus pattern (40 bp):
TTAGACACTGGCTCGCAAGCCCTTCGAGACCAAGCTCGGA
Found at i:22471842 original size:34 final size:33
Alignment explanation
Indices: 22471804--22471888 Score: 80
Period size: 34 Copynumber: 2.5 Consensus size: 33
22471794 TTAGGGCCTT
*
22471804 AGCCCATTTCAGTAACAATAGCAATCTGGGCGAG
1 AGCCC-TTTCAGTAACAATAGCAATCTAGGCGAG
* * * * **
22471838 AGCCCGTTGCAGTAATAGTAGCAGTCTAGGCTTG
1 AGCCC-TTTCAGTAACAATAGCAATCTAGGCGAG
22471872 AGCCCTTTACAGTAACA
1 AGCCCTTT-CAGTAACA
22471889 GTATGCAAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
33 2 0.05
34 38 0.95
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (33 bp):
AGCCCTTTCAGTAACAATAGCAATCTAGGCGAG
Found at i:22477043 original size:7 final size:7
Alignment explanation
Indices: 22477015--22477057 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
22477005 TCACATTTCT
22477015 ACTCATC
1 ACTCATC
*
22477022 CCTCATC
1 ACTCATC
*
22477029 ACCCATC
1 ACTCATC
22477036 ACTCATC
1 ACTCATC
*
22477043 ACTTATC
1 ACTCATC
*
22477050 ATTCATC
1 ACTCATC
22477057 A
1 A
22477058 TTATCTCCTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.42, G:0.00, T:0.30
Consensus pattern (7 bp):
ACTCATC
Found at i:22478776 original size:28 final size:29
Alignment explanation
Indices: 22478739--22478804 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
22478729 TAAAGTGATT
*
22478739 TTGAGTAAAAATGTATATT-AGGGATTAAA
1 TTGAG-AAAAATGTAAATTGAGGGATTAAA
* *
22478768 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATTGAGGGATTAAA
*
22478797 TTGTGAAA
1 TTGAGAAA
22478805 TAAATGAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGAGGGATTAAA
Found at i:22489856 original size:24 final size:24
Alignment explanation
Indices: 22489829--22489876 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
22489819 TTCACAAAAG
22489829 TTGTTTATTAGACAACTACAACTC
1 TTGTTTATTAGACAACTACAACTC
22489853 TTGTTTATTAGACAACTACAACTC
1 TTGTTTATTAGACAACTACAACTC
22489877 ATATTCTTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (24 bp):
TTGTTTATTAGACAACTACAACTC
Found at i:22497514 original size:71 final size:71
Alignment explanation
Indices: 22497430--22497593 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
22497420 CGATTTGTCT
22497430 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
22497495 CTTTCA
66 CTTTCA
22497501 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
22497566 CTTTCA
66 CTTTCA
22497572 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
22497594 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:22497631 original size:71 final size:70
Alignment explanation
Indices: 22497430--22497627 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
22497420 CGATTTGTCT
* * * *
22497430 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
22497495 CTTTCA
65 CTTTCA
* * * *
22497501 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
22497566 CTTTCA
65 CTTTCA
* *
22497572 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
22497628 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:22517106 original size:67 final size:64
Alignment explanation
Indices: 22516971--22517154 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
22516961 ATATAGTTCG
* * * * * *
22516971 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-AGT-TATCTCG
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACGCATGCGACCTAGCTACA-TATATCCCG
22517032 TA
63 TA
* *
22517034 GCTCTCTTGTCTACATGGTGTCCTTCACATAGAACCACGCATGCGACTTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACGCATGCGACCTAGCTACATATATCCCG
22517099 TA
63 TA
* * *
22517101 GCTCTCTTGTCTACATGGTGTACACATAGTATCACTCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACGCATGCGACCTAGCTACAT
22517155 CATAATGTCT
Statistics
Matches: 101, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 29 0.29
66 23 0.23
67 30 0.30
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACGCATGCGACCTAGCTACATATATCCCGTA
Found at i:22523313 original size:40 final size:40
Alignment explanation
Indices: 22523220--22523370 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
22523210 AATTGAATGA
* * * **
22523220 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
22523260 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
* *
22523301 -ATCTGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
22523340 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
22523371 AAATCGTGAT
Statistics
Matches: 88, Mismatches: 15, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.06
40 80 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:22528499 original size:37 final size:37
Alignment explanation
Indices: 22528449--22528593 Score: 263
Period size: 37 Copynumber: 3.9 Consensus size: 37
22528439 AATATATTTA
22528449 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
22528486 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
22528523 AATCTCCACACATAGTCATCGAGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
22528560 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
22528594 ATATATTTCC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:22528867 original size:47 final size:47
Alignment explanation
Indices: 22528803--22529040 Score: 386
Period size: 47 Copynumber: 5.1 Consensus size: 47
22528793 ACACGTTTTG
* * * * **
22528803 CATTAGCCATTCAGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
22528850 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
22528897 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
22528944 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
22528991 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
22529038 CAT
1 CAT
22529041 AAAATCCTAA
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:22533637 original size:57 final size:59
Alignment explanation
Indices: 22533531--22533654 Score: 164
Period size: 57 Copynumber: 2.1 Consensus size: 59
22533521 AAATAAATTG
* *
22533531 TGAAAATAGAGAAATGGTAAATCATTTGAAAATAACTATGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATGGTAAACCATTTGAAAATAACTATGGTTTTCTCCAAAATGAAAA
* * * *
22533590 TGAAAATGGAGAAAT-G-AAACCATTTGGAAATGAA-TGTGTTTTTCTCCAAAATTAAAA
1 TGAAAATGGAGAAATGGTAAACCATTTGAAAAT-AACTATGGTTTTCTCCAAAATGAAAA
22533647 TGAAAATG
1 TGAAAATG
22533655 ACCTGAAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 41 0.71
58 3 0.05
59 14 0.24
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (59 bp):
TGAAAATGGAGAAATGGTAAACCATTTGAAAATAACTATGGTTTTCTCCAAAATGAAAA
Found at i:22545571 original size:26 final size:26
Alignment explanation
Indices: 22545534--22545591 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
22545524 TGATATAAAT
22545534 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
22545560 TGATAATGGGTTAGGTAAATGTTTCT
1 TGATAATAGGTTAGGTAAATGTTCCA
22545586 TGATAA
1 TGATAA
22545592 GGATTTCATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:22547986 original size:46 final size:46
Alignment explanation
Indices: 22547936--22548111 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
22547926 TGGTTGAGCA
22547936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22547982 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22548027 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22548075 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22548112 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22548092 original size:93 final size:93
Alignment explanation
Indices: 22547933--22548104 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22547923 GGATGGTTGA
* *
22547933 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22547998 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22548026 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22548091 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
22548105 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22555538 original size:46 final size:46
Alignment explanation
Indices: 22555488--22555663 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
22555478 TGGTTGAGCA
22555488 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22555534 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22555579 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22555627 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22555664 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22555644 original size:93 final size:93
Alignment explanation
Indices: 22555485--22555656 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22555475 GGATGGTTGA
* *
22555485 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22555550 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22555578 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22555643 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
22555657 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22557947 original size:137 final size:137
Alignment explanation
Indices: 22557701--22557984 Score: 487
Period size: 137 Copynumber: 2.1 Consensus size: 137
22557691 TAGTCTCCCA
* * *
22557701 AAATGGGCTTGCATATGTTTACTGATGTTGCATTTATTTTGAAATGGGCCTATGGGCCATACTGT
1 AAATGGGCTTGCATATGGTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
*
22557766 TATCAGAATAAGGGGCTAAGGGCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCACT
66 TATCAGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCACT
22557831 GTTACCC
131 GTTACCC
22557838 AAATGGGCTTGCATATGGTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
1 AAATGGGCTTGCATATGGTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
* * *
22557903 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACCACT
66 TATCAGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCACT
*
22557968 GTTACCT
131 GTTACCC
*
22557975 GAATGGGCTT
1 AAATGGGCTT
22557985 AGGCCCAATA
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 138 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
AAATGGGCTTGCATATGGTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
TATCAGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACCACT
GTTACCC
Found at i:22561815 original size:26 final size:26
Alignment explanation
Indices: 22561778--22561861 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
22561768 TGATATAAAT
* *
22561778 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22561804 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22561830 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22561856 TGATAA
1 TGATAA
22561862 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:22565671 original size:40 final size:40
Alignment explanation
Indices: 22565611--22565794 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
22565601 TATTCGAATG
* *
22565611 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTAACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
22565651 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
22565691 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
22565731 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
22565771 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
22565795 CTTGTGCGAA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:22565744 original size:80 final size:80
Alignment explanation
Indices: 22565611--22565794 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
22565601 TATTCGAATG
* * *
22565611 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTAACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAG-TCCCGAAGGC
* *
22565675 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* * *
22565691 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
*
22565756 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
22565771 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22565795 CTTGTGCGAA
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCAACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:22566098 original size:22 final size:22
Alignment explanation
Indices: 22566056--22566099 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
22566046 AAAATGTGCA
* *
22566056 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
22566078 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
22566100 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:22567430 original size:137 final size:137
Alignment explanation
Indices: 22567183--22567469 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
22567173 CGTTACACTC
22567183 CCCAAATGGGCTTGCATATGTTTACAGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACAGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
22567248 TGTTATCTGAATAGGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
22567313 ACTGTTA
131 ACTGTTA
*
22567320 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACAGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
22567385 TGTTATCTGAATAAGGGGCTAATGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
22567450 ACTGTTA
131 ACTGTTA
**
22567457 CCTGAATGGGCTT
1 CCCAAATGGGCTT
22567470 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACAGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:22574291 original size:8 final size:7
Alignment explanation
Indices: 22574263--22574289 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
22574253 AAACATCAAT
22574263 TTTTTTA
1 TTTTTTA
22574270 TTTTTTA
1 TTTTTTA
22574277 TTTTTTA
1 TTTTTTA
22574284 TTTTTT
1 TTTTTT
22574290 TACCAAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:22576012 original size:56 final size:56
Alignment explanation
Indices: 22575952--22576133 Score: 294
Period size: 56 Copynumber: 3.2 Consensus size: 56
22575942 GGTTTTATTG
* * *
22575952 GCACACATAGAAT-GGAATCACATATCGATGCCAACGTTTTAAACTTGGTCTTACTC
1 GCACACATA-TATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
* * *
22576008 GCACACATATATCAGAATCACATATCGATGCAAATGTATTAAACGTGGTCTTACTC
1 GCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
22576064 GCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
1 GCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
22576120 GCACACATATATCG
1 GCACACATATATCG
22576134 ATGCCATGGT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 2 0.02
56 114 0.98
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
GCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
Found at i:22579292 original size:46 final size:43
Alignment explanation
Indices: 22579217--22579343 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 43
22579207 CATTAGGTGG
* * * *
22579217 TATGTGAGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCACAT
1 TATGAGAGCCAGTGTAAGACATGTTTGGGACATGCATCAG---CAT
22579263 TATGAGAGCCAGTGTAAGACATGTTTGGGACATGCATCAGCAT
1 TATGAGAGCCAGTGTAAGACATGTTTGGGACATGCATCAGCAT
*
22579306 TGAGGTGAGAGCTAGTGTAAGACATGTTTGGGACATGC
1 T-A--TGAGAGCCAGTGTAAGACATGTTTGGGACATGC
22579344 GTCGGCCTCG
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
43 4 0.05
44 1 0.01
46 68 0.93
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (43 bp):
TATGAGAGCCAGTGTAAGACATGTTTGGGACATGCATCAGCAT
Found at i:22583051 original size:30 final size:30
Alignment explanation
Indices: 22583017--22583076 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
22583007 TCCTTAACTC
22583017 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
22583047 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
22583077 CAGCTCGGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:22584415 original size:20 final size:21
Alignment explanation
Indices: 22584376--22584415 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22584366 GTCATAATGG
*
22584376 CCACATGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
22584397 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
22584416 GCTTTAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:22588212 original size:56 final size:56
Alignment explanation
Indices: 22588152--22588343 Score: 294
Period size: 56 Copynumber: 3.4 Consensus size: 56
22588142 TCCCAGGTAG
* * * *
22588152 GGTCTTACTCGCACACATAGAACGGAATCATATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * *
22588208 GGTCTTACTCACACATATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * *
22588264 GGTCTTATTCGCACACATATATCAGAATCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
22588320 GGTCTTACTCGCACACATATATCG
1 GGTCTTACTCGCACACATATATCG
22588344 ATGCCAACGT
Statistics
Matches: 121, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 121 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:22588348 original size:43 final size:43
Alignment explanation
Indices: 22588295--22588392 Score: 151
Period size: 43 Copynumber: 2.3 Consensus size: 43
22588285 TCAGAATCAC
* * * *
22588295 ATATCAATGCCAACGTATTAAACGTGGTCTTACTCGCACACAT
1 ATATCGATGCCAACGTATTAAACATGGTCTCACTCACACACAT
*
22588338 ATATCGATGCCAACGTATTAAATATGGTCTCACTCACACACAT
1 ATATCGATGCCAACGTATTAAACATGGTCTCACTCACACACAT
22588381 ATATCGATGCCA
1 ATATCGATGCCA
22588393 TGGTCTTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.28
Consensus pattern (43 bp):
ATATCGATGCCAACGTATTAAACATGGTCTCACTCACACACAT
Found at i:22591259 original size:40 final size:40
Alignment explanation
Indices: 22591204--22591386 Score: 273
Period size: 40 Copynumber: 4.6 Consensus size: 40
22591194 CGGATGATAA
* *
22591204 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
22591244 CCGGGCTAAGTCCCGAAGGCA-TTGTTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATA-T
22591284 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
22591324 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
22591364 CCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
22591387 CGAGCAAGTA
Statistics
Matches: 134, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 3 0.02
40 127 0.95
41 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22602609 original size:23 final size:23
Alignment explanation
Indices: 22602583--22602630 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
22602573 AAGAGATTAA
22602583 ATGGAGATCTTCGATCTTGAGGG
1 ATGGAGATCTTCGATCTTGAGGG
22602606 ATGGAGATCTTCGATCTTGAGGG
1 ATGGAGATCTTCGATCTTGAGGG
22602629 AT
1 AT
22602631 ATCCGCTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.12, G:0.33, T:0.31
Consensus pattern (23 bp):
ATGGAGATCTTCGATCTTGAGGG
Found at i:22605715 original size:16 final size:16
Alignment explanation
Indices: 22605694--22605727 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
22605684 TCACAATCGG
22605694 TATCGATAATTTTTTA
1 TATCGATAATTTTTTA
22605710 TATCGATAATTTTTTA
1 TATCGATAATTTTTTA
22605726 TA
1 TA
22605728 CTTCAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (16 bp):
TATCGATAATTTTTTA
Found at i:22618401 original size:6 final size:6
Alignment explanation
Indices: 22618390--22618606 Score: 216
Period size: 6 Copynumber: 35.8 Consensus size: 6
22618380 AACCAAAATG
*
22618390 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
22618438 AGTAAT- AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
22618487 AGAATT AGTAA-C AGAAAC AGAATC AGAATC AGAATC AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
22618535 AGAATC AGAATC AGAATT AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
22618583 ACGTGA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
22618607 GTGAATGCAA
Statistics
Matches: 179, Mismatches: 14, Indels: 36
0.78 0.06 0.16
Matches are distributed among these distances:
5 14 0.08
6 148 0.83
7 14 0.08
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:22618403 original size:30 final size:30
Alignment explanation
Indices: 22618390--22618606 Score: 313
Period size: 30 Copynumber: 7.4 Consensus size: 30
22618380 AACCAAAATG
*
22618390 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
22618420 AGAATCAGAATCA-ATATTAGTAATAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
22618450 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
22618475 AGAATCAGAATCAGAATTAGTAACAGAAAC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
22618505 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
22618535 AGAATCAGAATCAGAATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
22618565 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
22618596 AGAATCAGAAT
1 AGAATCAGAAT
22618607 GTGAATGCAA
Statistics
Matches: 171, Mismatches: 6, Indels: 19
0.87 0.03 0.10
Matches are distributed among these distances:
24 2 0.01
25 20 0.12
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 120 0.70
31 24 0.14
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:22618515 original size:115 final size:115
Alignment explanation
Indices: 22618390--22618606 Score: 400
Period size: 115 Copynumber: 1.9 Consensus size: 115
22618380 AACCAAAATG
*
22618390 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCA-ATATTAGTAATAGAATCAGAA
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGA-ATTAGTAACAGAATCAGAA
*
22618454 TCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATTAGTAACAGAAAC
65 TCAGAATCAGAATTACGTGACAGAATCAGAATCAGAATTAGTAACAGAAAC
22618505 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGTAACAGAATCAGAAT
22618570 CAGAATCAGAATTACGTGACAGAATCAGAATCAGAAT
66 CAGAATCAGAATTACGTGACAGAATCAGAATCAGAAT
22618607 GTGAATGCAA
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
115 98 0.99
116 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (115 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGACAGAATCAGAATCAGAATTAGTAACAGAAAC
Found at i:22618761 original size:27 final size:26
Alignment explanation
Indices: 22618724--22618782 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
22618714 AGCATGGCTG
*
22618724 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
22618750 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
22618777 CCAGAA
1 CCAGAA
22618783 TCAAATAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:22618794 original size:27 final size:27
Alignment explanation
Indices: 22618742--22618797 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
22618732 GATATCGTGA
* * *
22618742 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAAATAATGTGG
22618769 CAGAGCCACCAGA-ATCAAATAATGTGG
1 CAGAGCCACCAGATA-CAAATAATGTGG
22618796 CA
1 CA
22618798 AACCCACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGAGCCACCAGATACAAATAATGTGG
Found at i:22619010 original size:22 final size:22
Alignment explanation
Indices: 22618962--22619020 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
22618952 GTAAATACGT
*
22618962 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
22618984 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
22619006 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
22619021 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:22619187 original size:27 final size:26
Alignment explanation
Indices: 22619111--22619190 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
22619101 ATCGGTCAAT
* * *
22619111 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
22619138 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
*
22619164 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
22619191 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.15
27 41 0.85
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:22619419 original size:27 final size:27
Alignment explanation
Indices: 22619389--22619585 Score: 171
Period size: 27 Copynumber: 7.3 Consensus size: 27
22619379 GGGGCAAAAT
* *
22619389 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
22619416 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
22619443 GGT-ATTTCTACCCTACAAAGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * * *
22619470 GATAATTCTATCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
22619497 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
22619524 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*** * *
22619551 AAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
22619578 AGTAATTT
1 GGTAATTT
22619586 CACAATCAAG
Statistics
Matches: 142, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.02
27 136 0.96
28 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:22619533 original size:81 final size:81
Alignment explanation
Indices: 22619392--22619584 Score: 233
Period size: 81 Copynumber: 2.4 Consensus size: 81
22619382 GCAAAATGGT
* * * * * * *
22619392 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
* *
22619457 ACAAAGGTATTTCGAT
66 ACAAAGGTATTTCAAA
* * * * *
22619473 AATTCTATCCTATAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
* *
22619538 ATAAGGGTATTTCAAA
66 ACAAAGGTATTTCAAA
*
22619554 AATTCTACCCTACAGGGGTATTTCAGTAATT
1 AATTCTACCCTACAGGGGTATTTCGGTAATT
22619585 TCACAATCAA
Statistics
Matches: 92, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (81 bp):
AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
ACAAAGGTATTTCAAA
Found at i:22619619 original size:27 final size:27
Alignment explanation
Indices: 22619589--22619902 Score: 294
Period size: 27 Copynumber: 11.2 Consensus size: 27
22619579 GTAATTTCAC
* * *
22619589 AATCAAGGGTAAAATGGTAATTCCGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
22619616 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
22619643 AA-CTGAGGGTAAACCCGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
22619670 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22619697 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
22619724 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22619751 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** *
22619778 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22619805 AA-CTGAGGGTAAAACTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAAC-----G------G-TAATTCTGTA
**
22619844 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22619871 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
22619898 AATCG
1 AATCG
22619903 GAAGTACTTT
Statistics
Matches: 236, Mismatches: 31, Indels: 40
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.02
27 205 0.87
28 4 0.02
38 1 0.00
39 21 0.09
40 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:22619664 original size:54 final size:55
Alignment explanation
Indices: 22619594--22619902 Score: 333
Period size: 54 Copynumber: 5.5 Consensus size: 55
22619584 TTCACAATCA
* * * *
22619594 AGGGTAAAATGGTAATTCCGTAAATCGAGGGTAAAACGA-TAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTATAAACTG
* * * * * *
22619648 AGGGTAAACCCGTAATTCTATAAATCAAGGGTAAAACG-GTAATTTTACAAA-TCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTATAAACT-G
*
22619702 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTATAAACTG
*
22619756 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TAGTAATTCTATAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTATAAACTG
* *
22619810 AGGGTAAAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAAC
1 AGGGTAAAAC-----G------G-TAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTATAAAC
22619874 TG
54 TG
22619876 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
22619903 GAAGTACTTT
Statistics
Matches: 221, Mismatches: 17, Indels: 34
0.81 0.06 0.12
Matches are distributed among these distances:
53 1 0.00
54 164 0.74
55 2 0.01
59 1 0.00
61 1 0.00
65 1 0.00
66 51 0.23
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.27
Consensus pattern (55 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCTATAAACTG
Found at i:22619821 original size:12 final size:12
Alignment explanation
Indices: 22619804--22619831 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
22619794 GTAATTCTAT
22619804 AAACTGAGGGTA
1 AAACTGAGGGTA
22619816 AAACTGAGGGTA
1 AAACTGAGGGTA
22619828 AAAC
1 AAAC
22619832 GATAATTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.29, T:0.14
Consensus pattern (12 bp):
AAACTGAGGGTA
Found at i:22619825 original size:66 final size:66
Alignment explanation
Indices: 22619750--22619885 Score: 254
Period size: 66 Copynumber: 2.1 Consensus size: 66
22619740 GTAATTCTGT
*
22619750 AAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGGT
1 AAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGGT
22619815 A
66 A
*
22619816 AAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGT
1 AAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGGT
22619881 A
66 A
22619882 AAAC
1 AAAC
22619886 GGTAATTCTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.25
Consensus pattern (66 bp):
AAACTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGGT
A
Found at i:22619828 original size:39 final size:39
Alignment explanation
Indices: 22619782--22619857 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 39
22619772 TCTGTAAATC
22619782 GAGGGTAAAATAG-TAATTCTATAAA-CTGAGGGTAAAACT
1 GAGGGTAAAA-AGATAATTCTATAAATC-GAGGGTAAAACT
* *
22619821 GAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
1 GAGGGTAAAAAGATAATTCTATAAATCGAGGGTAAAA
22619858 TAGTAATTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 1 0.03
39 31 0.94
40 1 0.03
ACGTcount: A:0.43, C:0.08, G:0.25, T:0.24
Consensus pattern (39 bp):
GAGGGTAAAAAGATAATTCTATAAATCGAGGGTAAAACT
Found at i:22619838 original size:93 final size:93
Alignment explanation
Indices: 22619728--22619899 Score: 251
Period size: 93 Copynumber: 1.8 Consensus size: 93
22619718 TCTGTAAATC
*
22619728 GAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAA
1 GAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAA
*
22619791 ATAGTAATTCTATAAACTGAGGGTAAAACT
64 ACAGTAATTCTATAAACTGAGGGTAAAACT
*
22619821 GAGGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 GAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
* *
22619885 CGGTAATTCTGTAAA
65 CAGTAATTCTATAAA
22619900 TCGGAAGTAC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 1 0.01
93 68 0.96
94 2 0.03
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (93 bp):
GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAC
AGTAATTCTATAAACTGAGGGTAAAACT
Found at i:22626367 original size:25 final size:25
Alignment explanation
Indices: 22626325--22626373 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
22626315 CTTTATTATT
* *
22626325 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
22626350 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
22626374 GGTCATCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:22628331 original size:44 final size:43
Alignment explanation
Indices: 22628280--22628407 Score: 134
Period size: 42 Copynumber: 3.0 Consensus size: 43
22628270 ATATGTGTTA
* * *
22628280 TCGTGTAAGACCGTATCTAGGACATTGGCATCGATTTGA-GATT
1 TCGTGTAAGACCATGTCTAGGACATTGGCATCGATAT-ATGATT
* * *
22628323 TACGTGTAAAACCATGTCTGGGACATCGGCATCG-TATATGATT
1 T-CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATT
* * * *
22628366 TCGCGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGAT
1 TCGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGAT
22628408 AACGGGCAAT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 27 0.39
43 15 0.22
44 27 0.39
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATT
Found at i:22628953 original size:36 final size:36
Alignment explanation
Indices: 22628913--22628984 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
22628903 TGTATGGTTT
* *
22628913 TTAATTTAAATTTTTTAATTGATAAATGAGATTGAA
1 TTAATATAAATTTTTGAATTGATAAATGAGATTGAA
22628949 TTAATATAAATTTTTGAATTGATAAATGAGATTGAA
1 TTAATATAAATTTTTGAATTGATAAATGAGATTGAA
22628985 ATGATTGAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.44
Consensus pattern (36 bp):
TTAATATAAATTTTTGAATTGATAAATGAGATTGAA
Found at i:22628983 original size:18 final size:18
Alignment explanation
Indices: 22628929--22628989 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
22628919 TAAATTTTTT
22628929 AATTGATAAATGAGATTG
1 AATTGATAAATGAGATTG
* **
22628947 AATTAATATAA--ATTTTTG
1 AATTGATA-AATGA-GATTG
22628965 AATTGATAAATGAGATTG
1 AATTGATAAATGAGATTG
*
22628983 AAATGAT
1 AATTGAT
22628990 TGAGGTTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 8
0.68 0.15 0.17
Matches are distributed among these distances:
17 3 0.09
18 26 0.81
19 3 0.09
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (18 bp):
AATTGATAAATGAGATTG
Found at i:22630908 original size:25 final size:25
Alignment explanation
Indices: 22630869--22630925 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
22630859 GTAAGGAGGG
22630869 GATAA-GGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
22630893 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
22630918 GATCAAGG
1 GAT-AAGG
22630926 AGCAAGAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 5 0.16
25 22 0.71
26 4 0.13
ACGTcount: A:0.37, C:0.05, G:0.39, T:0.19
Consensus pattern (25 bp):
GATAAGGGGAGAAGATTTAGGAGCT
Found at i:22631893 original size:8 final size:8
Alignment explanation
Indices: 22631880--22631911 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
22631870 CTAGATCGGC
22631880 AAAAGCCG
1 AAAAGCCG
22631888 AAAAGCCG
1 AAAAGCCG
*
22631896 AAATGCCG
1 AAAAGCCG
22631904 AAAAGCCG
1 AAAAGCCG
22631912 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:22632367 original size:27 final size:27
Alignment explanation
Indices: 22632327--22632437 Score: 154
Period size: 27 Copynumber: 4.1 Consensus size: 27
22632317 AGGAAGCGTC
*
22632327 CTGGTGGCTATGCCACATTTATCTGATT
1 CTGGTGGCTCTGCCACATTTATCTG-TT
*
22632355 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
22632381 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
22632408 CTAGTGACTCTGCCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
22632434 CTGG
1 CTGG
22632438 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 14 0.19
27 61 0.81
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:22638177 original size:40 final size:40
Alignment explanation
Indices: 22638132--22638299 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
22638122 CGGAATACAA
22638132 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
22638172 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
22638212 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
22638252 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
22638292 CCGGATAT
1 CCGGATAT
22638300 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:22638272 original size:80 final size:80
Alignment explanation
Indices: 22638132--22638299 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
22638122 CGGAATACAA
* *
22638132 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
22638197 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
22638212 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
22638275 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
22638292 CCGGATAT
1 CCGGATAT
22638300 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:22646156 original size:40 final size:40
Alignment explanation
Indices: 22646111--22646278 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
22646101 CGGAATACAA
22646111 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
22646151 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
22646191 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
22646231 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
22646271 CCGGATAT
1 CCGGATAT
22646279 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:22646251 original size:80 final size:80
Alignment explanation
Indices: 22646111--22646278 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
22646101 CGGAATACAA
* *
22646111 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
22646176 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
22646191 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
22646254 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
22646271 CCGGATAT
1 CCGGATAT
22646279 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:22649932 original size:25 final size:26
Alignment explanation
Indices: 22649898--22649948 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
22649888 AGGGGATAAA
*
22649898 GGAGATGATTTAGGAGCTGAT-AAGG
1 GGAGAAGATTTAGGAGCTGATCAAGG
22649923 GGAGAAGATTTAGGAGCTGATCAAGG
1 GGAGAAGATTTAGGAGCTGATCAAGG
22649949 AGCAAGAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.33, C:0.06, G:0.39, T:0.22
Consensus pattern (26 bp):
GGAGAAGATTTAGGAGCTGATCAAGG
Found at i:22649955 original size:25 final size:23
Alignment explanation
Indices: 22649896--22649955 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 23
22649886 GGAGGGGATA
*
22649896 AAGGAGATGATTTAGGAGCTGAT
1 AAGGAGAAGATTTAGGAGCTGAT
22649919 AAGGGGAGAAGATTTAGGAGCTGAT
1 AA--GGAGAAGATTTAGGAGCTGAT
22649944 CAAGGAGCAAGA
1 -AAGGAG-AAGA
22649956 GTTGGTCGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 2 0.06
24 4 0.12
25 24 0.75
26 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.37, T:0.18
Consensus pattern (23 bp):
AAGGAGAAGATTTAGGAGCTGAT
Found at i:22651392 original size:27 final size:27
Alignment explanation
Indices: 22651350--22651460 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
22651340 AGGAAGCGTC
* * * *
22651350 CTGGTGGCTATGCCACATTTATTTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
22651377 CTGGTGGCTCTACCACAAATATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
22651404 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
22651431 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
22651457 CTGG
1 CTGG
22651461 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 14 0.19
27 60 0.81
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:22655794 original size:78 final size:78
Alignment explanation
Indices: 22655665--22655820 Score: 303
Period size: 78 Copynumber: 2.0 Consensus size: 78
22655655 ATCAAGCTAC
22655665 CATGTTGGATAAATGAACACAAACCTTTGAGTCTATGGCATGTATAGGGACTTAGTCATTTTGTG
1 CATGTTGGATAAATGAACACAAACCTTTGAGTCTATGGCATGTATAGGGACTTAGTCATTTTGTG
22655730 TATGTGTCATTAT
66 TATGTGTCATTAT
*
22655743 CATGTTGGGTAAATGAACACAAACCTTTGAGTCTATGGCATGTATAGGGACTTAGTCATTTTGTG
1 CATGTTGGATAAATGAACACAAACCTTTGAGTCTATGGCATGTATAGGGACTTAGTCATTTTGTG
22655808 TATGTGTCATTAT
66 TATGTGTCATTAT
22655821 GATATGGCCA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (78 bp):
CATGTTGGATAAATGAACACAAACCTTTGAGTCTATGGCATGTATAGGGACTTAGTCATTTTGTG
TATGTGTCATTAT
Found at i:22661173 original size:2 final size:2
Alignment explanation
Indices: 22661166--22661194 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
22661156 TGAAAGTTGA
22661166 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22661195 TTTGAAAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:22662215 original size:38 final size:38
Alignment explanation
Indices: 22662169--22662265 Score: 122
Period size: 38 Copynumber: 2.6 Consensus size: 38
22662159 GCCCTAAAGA
* *
22662169 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCAGGGATAAAT
* **
22662207 CTCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCAGGGATAAAT
* * *
22662245 CCCGTAGGCCTAGTGCTGGTA
1 CCCGCAGGCTTCGTGCTGGTA
22662266 TTATATTCGG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAAAATATCAGGGATAAAT
Found at i:22662694 original size:43 final size:43
Alignment explanation
Indices: 22662269--22662681 Score: 664
Period size: 43 Copynumber: 9.6 Consensus size: 43
22662259 GCTGGTATTA
**
22662269 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGACATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * * *
22662312 TATTCGGGCTTTCGTGCCTAGCAGGATTCATGCCGATGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
22662355 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
22662398 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
22662441 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
22662484 TATTCGGGACTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
22662527 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGCGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
22662570 TATTCGGGCCTTCGTGCCTAGTAGGCTTCCTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
22662613 TATTCGGGCCTTCGTGCCTAGTAGGCTTCCTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
22662656 TATTCGAGCCTTCGTTCCTAGTAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
22662682 GTAATGCCGG
Statistics
Matches: 346, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 346 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:22676623 original size:2 final size:2
Alignment explanation
Indices: 22676616--22676652 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
22676606 ATATGTGCAA
* *
22676616 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22676653 AAATATACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:22676794 original size:2 final size:2
Alignment explanation
Indices: 22676741--22676775 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
22676731 GGAATTTAAA
* *
22676741 AT AT AC AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22676776 ATAGTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:22677384 original size:11 final size:12
Alignment explanation
Indices: 22677368--22677404 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
22677358 AGAAAAAAAA
22677368 GGAAGAGAG-AG
1 GGAAGAGAGAAG
22677379 GGAAGAGAGAAG
1 GGAAGAGAGAAG
22677391 GG-AGAGAGAAG
1 GGAAGAGAGAAG
22677402 GGA
1 GGA
22677405 GGGGAAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:22677405 original size:11 final size:11
Alignment explanation
Indices: 22677366--22677414 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
22677356 AAAGAAAAAA
*
22677366 AAGGAAGAGAG
1 AAGGGAGAGAG
22677377 -AGGGAAGAGAG
1 AAGGG-AGAGAG
22677388 AAGGGAGAGAG
1 AAGGGAGAGAG
*
22677399 AAGGGAG-GGG
1 AAGGGAGAGAG
22677409 AAGGGA
1 AAGGGA
22677415 AATCGGTCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 11 0.32
11 19 0.56
12 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:22677708 original size:14 final size:15
Alignment explanation
Indices: 22677673--22677708 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
22677663 TTTTTTGGTT
22677673 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
22677688 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
22677702 TTTTTTT
1 TTTTTTT
22677709 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:22677709 original size:15 final size:16
Alignment explanation
Indices: 22677672--22677709 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
22677662 TTTTTTTGGT
22677672 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
22677688 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
22677702 TTTTTTTT
1 TTTTTTTT
22677710 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:22677723 original size:33 final size:33
Alignment explanation
Indices: 22677671--22677744 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
22677661 TTTTTTTTGG
*
22677671 TTTTTTTT-TGCTGGAAATTTTTTTCTGGAAAT
1 TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
**
22677703 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATTT
1 TTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAAT
22677736 TTTTTTTTG
1 TTTTTTTTG
22677745 CTTCCCCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 9 0.24
33 22 0.59
34 6 0.16
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
Found at i:22678221 original size:34 final size:35
Alignment explanation
Indices: 22678147--22678251 Score: 185
Period size: 34 Copynumber: 3.0 Consensus size: 35
22678137 GGGGTGTGTG
*
22678147 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
22678182 GTGGTGCTGGTGGCAGACAGCATGGGAGA-TGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
22678216 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
22678251 A
1 A
22678252 GAGGCAAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
34 33 0.50
35 33 0.50
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:22679036 original size:48 final size:50
Alignment explanation
Indices: 22678960--22679106 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
22678950 ATATGACCTA
**
22678960 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
22679008 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
22679062 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
22679107 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:22679256 original size:70 final size:70
Alignment explanation
Indices: 22679162--22679750 Score: 980
Period size: 70 Copynumber: 8.2 Consensus size: 70
22679152 TCAACTCACC
22679162 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
22679227 TCGCCA
65 TCGCAA
*
22679233 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
22679298 CACCTCTCGCAA
59 CACCTCTCGCAA
*
22679310 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
22679375 CGCAA
66 CGCAA
22679380 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
22679445 CGCCA
66 CGCAA
*
22679450 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
22679515 CACCTCTCGCAA
59 CACCTCTCGCAA
*
22679527 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
22679592 CGCAA
66 CGCAA
22679597 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
22679662 CGCAA
66 CGCAA
22679667 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
22679732 CGCAA
66 CGCAA
*
22679737 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
22679751 CTGTCACTTG
Statistics
Matches: 492, Mismatches: 12, Indels: 29
0.92 0.02 0.05
Matches are distributed among these distances:
70 342 0.70
71 10 0.02
72 2 0.00
73 2 0.00
74 2 0.00
75 2 0.00
77 132 0.27
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (70 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAA
Found at i:22679351 original size:147 final size:140
Alignment explanation
Indices: 22679162--22679750 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
22679152 TCAACTCACC
22679162 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
22679227 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
22679292 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
22679310 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
22679375 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
22679440 CCTCTCGCCA
131 CCTCTCGCAA
*
22679450 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
22679515 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
22679580 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
22679597 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
22679662 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
22679727 CCTCTCGCAA
131 CCTCTCGCAA
*
22679737 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
22679751 CTGTCACTTG
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:22679446 original size:217 final size:217
Alignment explanation
Indices: 22679162--22679750 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
22679152 TCAACTCACC
22679162 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
22679227 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
22679292 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
22679357 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
22679380 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
22679445 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
22679510 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
22679575 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
22679597 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
22679662 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
22679720 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
22679751 CTGTCACTTG
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 295 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:22691967 original size:2 final size:2
Alignment explanation
Indices: 22691954--22692085 Score: 57
Period size: 2 Copynumber: 69.0 Consensus size: 2
22691944 GGAATTTAAA
* * *
22691954 AT AT AC AT AT AT AT AT AT AT AT AT AT GT AT AT A- AT AGT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
* * * * **
22691996 A- AG A- AT AT AT AC AT A- AG AA AT AT AT A- ACT A- AT GGC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT
* * *
22692035 AT AC AT A- AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
22692074 AT AT AT AC AT AT
1 AT AT AT AT AT AT
22692086 TAGAAATGAT
Statistics
Matches: 98, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
1 9 0.09
2 86 0.88
3 3 0.03
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.39
Consensus pattern (2 bp):
AT
Found at i:22692619 original size:11 final size:12
Alignment explanation
Indices: 22692603--22692639 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
22692593 AGAAAAAAAA
22692603 GGAAGAGAG-AG
1 GGAAGAGAGAAG
22692614 GGAAGAGAGAAG
1 GGAAGAGAGAAG
22692626 GG-AGAGAGAAG
1 GGAAGAGAGAAG
22692637 GGA
1 GGA
22692640 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:22692640 original size:11 final size:11
Alignment explanation
Indices: 22692601--22692650 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
22692591 AAAGAAAAAA
*
22692601 AAGGAAGAGAG
1 AAGGGAGAGAG
22692612 -AGGGAAGAGAG
1 AAGGG-AGAGAG
22692623 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
22692634 AAGGGAGGGGG
1 AAGGGAGAGAG
22692645 AAGGGA
1 AAGGGA
22692651 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:22692693 original size:6 final size:6
Alignment explanation
Indices: 22692682--22692706 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22692672 CACCGGAGCT
22692682 CGCCGG CGCCGG CGCCGG CGCCGG C
1 CGCCGG CGCCGG CGCCGG CGCCGG C
22692707 CACCGTACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.48, T:0.00
Consensus pattern (6 bp):
CGCCGG
Found at i:22692956 original size:14 final size:15
Alignment explanation
Indices: 22692921--22692956 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
22692911 TTTTTGGTTT
22692921 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
22692936 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
22692950 TTTTTTT
1 TTTTTTT
22692957 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:22692957 original size:15 final size:16
Alignment explanation
Indices: 22692920--22692958 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
22692910 TTTTTTGGTT
22692920 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
22692936 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
22692950 TTTTTTTTG
1 TTTTTTTTG
22692959 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:22692970 original size:32 final size:32
Alignment explanation
Indices: 22692918--22692994 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
22692908 TTTTTTTTGG
* *
22692918 TTTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
**
22692950 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATT
1 TTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAA
*
22692982 TTTTTTTTTTGCT
1 TTTTTTTTGTGCT
22692995 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
31 4 0.10
32 29 0.74
33 6 0.15
ACGTcount: A:0.12, C:0.06, G:0.18, T:0.64
Consensus pattern (32 bp):
TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
Found at i:22692985 original size:14 final size:15
Alignment explanation
Indices: 22692920--22692987 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
22692910 TTTTTTGGTT
22692920 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
22692935 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
22692950 TTTTTTTTGGTGCTGGAA
1 -TTTTTTT--TGCTGGAA
22692968 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
22692980 TTTTTTTT
1 TTTTTTTT
22692988 TTTTGCTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
16 6 0.14
18 3 0.07
19 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:22693434 original size:35 final size:35
Alignment explanation
Indices: 22693394--22693499 Score: 185
Period size: 35 Copynumber: 3.0 Consensus size: 35
22693384 GGGGTGTGTG
*
22693394 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
* *
22693429 GTGGTGCTGGTGGCAGACAGCATGGGAGTGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
22693464 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
22693499 A
1 A
22693500 GAGGCAAGTG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.22, C:0.12, G:0.49, T:0.17
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:22695394 original size:40 final size:40
Alignment explanation
Indices: 22695341--22695479 Score: 176
Period size: 40 Copynumber: 3.5 Consensus size: 40
22695331 GGATGTAACG
* *
22695341 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTT-TAGTA
* *
22695381 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTTTAGTA
*
22695421 ACTCGCACAAATGCCTTCGGG-CTTAA-CCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGG-TTTAGTA
* *
22695460 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
22695480 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
38 4 0.05
39 29 0.33
40 46 0.52
41 9 0.10
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTTTAGTA
Found at i:22700531 original size:49 final size:49
Alignment explanation
Indices: 22700456--22700551 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
22700446 AGGTTGCCTT
* *
22700456 TTCCTGTCAACAAAGCTTGGAGAGCTCAAGAGAGGCTCCAACTGGTCCA
1 TTCCTGTCAACAAAGCTTGGAAAGCTCAAAAGAGGCTCCAACTGGTCCA
22700505 TTCCTGTCAACAAAGCTTGGAAAGCTCAAAAGAGGCTCCAACTGGTC
1 TTCCTGTCAACAAAGCTTGGAAAGCTCAAAAGAGGCTCCAACTGGTC
22700552 TATACAGACA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (49 bp):
TTCCTGTCAACAAAGCTTGGAAAGCTCAAAAGAGGCTCCAACTGGTCCA
Found at i:22703415 original size:43 final size:43
Alignment explanation
Indices: 22703219--22703413 Score: 336
Period size: 43 Copynumber: 4.5 Consensus size: 43
22703209 GCATTACACT
*
22703219 TGCTAGGCACGTAGGCCCGAATACACATCACCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
22703262 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
* *
22703305 TACTAGGCACGAAGGCCCGAATACACATCGCCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
* * *
22703348 TGCTAGGCACGAAGGCCCGAATATACATCGCCGGCACGAAACC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
22703391 TGCTAGGCACGAAGGCCCGAATA
1 TGCTAGGCACGAAGGCCCGAATA
22703414 TAATACCAGC
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (43 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
Found at i:22703453 original size:38 final size:38
Alignment explanation
Indices: 22703406--22703529 Score: 158
Period size: 38 Copynumber: 3.2 Consensus size: 38
22703396 GGCACGAAGG
* * * *
22703406 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
22703444 CCCTGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
22703482 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
22703521 GCCCGGATA
1 -CCCGGATA
22703530 CACATCAAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
38 62 0.83
39 5 0.07
40 8 0.11
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:22704492 original size:2 final size:2
Alignment explanation
Indices: 22704485--22704520 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22704475 CACTTTCAAA
22704485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22704521 TCAACTTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22713427 original size:41 final size:41
Alignment explanation
Indices: 22713370--22713453 Score: 152
Period size: 41 Copynumber: 2.0 Consensus size: 41
22713360 TGATTTTTGT
22713370 TACTTAGTTACACTAGAACTAAGAT-AGTAATGTATTTGATG
1 TACTTAGTTACACTAGAACTAAG-TCAGTAATGTATTTGATG
22713411 TACTTAGTTACACTAGAACTAAGTCAGTAATGTATTTGATG
1 TACTTAGTTACACTAGAACTAAGTCAGTAATGTATTTGATG
22713452 TA
1 TA
22713454 ATTTGGTGCT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 1 0.02
41 41 0.98
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (41 bp):
TACTTAGTTACACTAGAACTAAGTCAGTAATGTATTTGATG
Found at i:22714301 original size:41 final size:41
Alignment explanation
Indices: 22714250--22714332 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
22714240 ACAAAACCAA
*
22714250 ATGATCCAAAAGGAAACCAGATATGATGTCTACAATGATGC
1 ATGATACAAAAGGAAACCAGATATGATGTCTACAATGATGC
*
22714291 ATGATACAAAAGGAAACCAGATATGATGTCTACAGTGATGC
1 ATGATACAAAAGGAAACCAGATATGATGTCTACAATGATGC
22714332 A
1 A
22714333 ATATAAAACC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (41 bp):
ATGATACAAAAGGAAACCAGATATGATGTCTACAATGATGC
Found at i:22731075 original size:27 final size:28
Alignment explanation
Indices: 22731018--22731087 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
22731008 AAATTTGTAC
**
22731018 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
22731046 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
22731073 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22731088 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:22731096 original size:27 final size:27
Alignment explanation
Indices: 22731018--22731099 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
22731008 AAATTTGTAC
* *
22731018 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
22731046 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
22731073 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
22731100 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:22738997 original size:27 final size:28
Alignment explanation
Indices: 22738940--22739009 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
22738930 AAATTTGTAC
**
22738940 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
22738968 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
22738995 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22739010 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:22739018 original size:27 final size:27
Alignment explanation
Indices: 22738940--22739021 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
22738930 AAATTTGTAC
* *
22738940 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
22738968 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
22738995 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
22739022 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:22743558 original size:17 final size:18
Alignment explanation
Indices: 22743532--22743565 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22743522 TTTTTGTTTA
22743532 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
22743549 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
22743566 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:22751890 original size:22 final size:22
Alignment explanation
Indices: 22751864--22751908 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
22751854 AATAATTATG
22751864 TTAATTTAATCATTTTCTTTTT
1 TTAATTTAATCATTTTCTTTTT
22751886 TTAATTTAATCATTTTCTTTTT
1 TTAATTTAATCATTTTCTTTTT
22751908 T
1 T
22751909 CTAAGCATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (22 bp):
TTAATTTAATCATTTTCTTTTT
Found at i:22759765 original size:19 final size:20
Alignment explanation
Indices: 22759724--22759783 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
22759714 AAAAATTAAA
22759724 AAAATAATTTTCAAAATTTC
1 AAAATAATTTTCAAAATTTC
22759744 AAAATAATTATT-AAAA-TTC
1 AAAATAATT-TTCAAAATTTC
*
22759763 AAAAT-ATTTCTAAAAATTTC
1 AAAATAATTT-TCAAAATTTC
22759783 A
1 A
22759784 GAATTTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.03
18 4 0.11
19 12 0.33
20 17 0.47
21 2 0.06
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATAATTTTCAAAATTTC
Found at i:22760732 original size:19 final size:21
Alignment explanation
Indices: 22760695--22760737 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
22760685 TATATTTAAA
22760695 ATTTTATTTTTGATAAAAAAT
1 ATTTTATTTTTGATAAAAAAT
*
22760716 ATTTTA-TTTT-ATTAAAAAT
1 ATTTTATTTTTGATAAAAAAT
22760735 ATT
1 ATT
22760738 CATTAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.52
20 4 0.19
21 6 0.29
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTTTATTTTTGATAAAAAAT
Found at i:22766546 original size:26 final size:26
Alignment explanation
Indices: 22766439--22766548 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
22766429 TGATACAAAT
22766439 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
22766465 TGACAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
22766491 TGCTAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
22766517 TGATAAT-GGTTTAGGTAAATGTTTCA
1 TGATAATAGG-TTAGGTAAATGTTCCA
22766543 TGATAA
1 TGATAA
22766549 GAATTTCATG
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
25 2 0.03
26 75 0.97
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:22769680 original size:13 final size:13
Alignment explanation
Indices: 22769617--22769677 Score: 95
Period size: 13 Copynumber: 4.7 Consensus size: 13
22769607 ACACTTAAAT
22769617 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
22769630 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
22769643 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
22769656 TTTTCAAAAACAC
1 TTTTCAAAAGCAC
22769669 TTTTCAAAA
1 TTTTCAAAA
22769678 ACAATGAAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Done.