Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 91 of 410
Found at i:26615896 original size:32 final size:32
Alignment explanation
Indices: 26615835--26615905 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 32
26615825 TTTATACTTT
* *
26615835 AATTTGATTAAATTTAACTTTTGTATTTTTTG
1 AATTTGATCAAATTTAACTTTTATATTTTTTG
**
26615867 AATTTG-TCAAATTTAA-TCTTTATACTTTTTAA
1 AATTTGATCAAATTTAACT-TTTATA-TTTTTTG
26615899 AATTTGA
1 AATTTGA
26615906 AATTTTAGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
30 1 0.03
31 14 0.44
32 17 0.53
ACGTcount: A:0.32, C:0.06, G:0.07, T:0.55
Consensus pattern (32 bp):
AATTTGATCAAATTTAACTTTTATATTTTTTG
Found at i:26617294 original size:24 final size:24
Alignment explanation
Indices: 26617257--26617332 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
26617247 ATTTTATAAT
* * *
26617257 AAATTTAGCCTTTAATATTTTATAT
1 AAATTTAACTTTTAATATTTTA-AC
* * *
26617282 GATTTTAA-TTTTAAAATTTTAAC
1 AAATTTAACTTTTAATATTTTAAC
26617305 AAATTTAACTTTTAATA-TTT-AC
1 AAATTTAACTTTTAATATTTTAAC
26617327 AAATTT
1 AAATTT
26617333 TAATAATTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
22 8 0.20
23 10 0.24
24 18 0.44
25 5 0.12
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (24 bp):
AAATTTAACTTTTAATATTTTAAC
Found at i:26617331 original size:22 final size:23
Alignment explanation
Indices: 26617285--26617332 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
26617275 TTTATATGAT
26617285 TTTAATTTTAAAATTTTAACAAA
1 TTTAATTTTAAAATTTTAACAAA
*
26617308 TTTAACTTTTAATA-TTT-ACAAA
1 TTTAA-TTTTAAAATTTTAACAAA
26617330 TTT
1 TTT
26617333 TAATAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 8 0.35
23 8 0.35
24 7 0.30
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAATTTTAAAATTTTAACAAA
Found at i:26617334 original size:23 final size:24
Alignment explanation
Indices: 26617283--26617336 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
26617273 ATTTTATATG
26617283 ATTTTAATTTTAAAATTTTAACAA
1 ATTTTAATTTTAAAATTTTAACAA
*
26617307 A-TTTAACTTTTAATA-TTT-ACAA
1 ATTTTAA-TTTTAAAATTTTAACAA
26617329 ATTTTAAT
1 ATTTTAAT
26617337 AATTTGATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 6 0.22
23 13 0.48
24 8 0.30
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (24 bp):
ATTTTAATTTTAAAATTTTAACAA
Found at i:26618817 original size:23 final size:23
Alignment explanation
Indices: 26618772--26618827 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
26618762 AGTGTTAAGT
* * *
26618772 ATATATATATATATTATATAATA
1 ATATATAAATATATAATAAAATA
*
26618795 ATATATAAATGTATAATAAAATA
1 ATATATAAATATATAATAAAATA
*
26618818 AAATAATAAA
1 ATAT-ATAAA
26618828 AGAATGAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 22 0.81
24 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
ATATATAAATATATAATAAAATA
Found at i:26619886 original size:39 final size:38
Alignment explanation
Indices: 26619766--26619899 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 38
26619756 GACTTCGAGT
*
26619766 CGATGAGACACTAGGTGTCAATTTATTACTTCGAAATTATT
1 CGATGAGACACTAGGTGTCAA-TTA-TACTTCG-AATTATC
* * * *
26619807 CGATAAGGCACT-GGATG-CTAATT-TACTTCTG-TTTAAC
1 CGATGAGACACTAGG-TGTC-AATTATACTTC-GAATTATC
26619844 CGATGAGACACTAGGTGTCAATTACTACTTCGAATTATC
1 CGATGAGACACTAGGTGTCAATTA-TACTTCGAATTATC
* *
26619883 CGATGAGGCACTGGGTG
1 CGATGAGACACTAGGTG
26619900 CAAAACTGGT
Statistics
Matches: 74, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
37 19 0.26
38 10 0.14
39 26 0.35
40 5 0.07
41 14 0.19
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (38 bp):
CGATGAGACACTAGGTGTCAATTATACTTCGAATTATC
Found at i:26625786 original size:46 final size:45
Alignment explanation
Indices: 26625736--26625907 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
26625726 TGGTTGAGCA
26625736 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
26625782 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
26625828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
26625874 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26625908 GGGGGGTTAC
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:26625890 original size:92 final size:92
Alignment explanation
Indices: 26625733--26625902 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
26625723 GGATGGTTGA
* *
26625733 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26625798 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
26625825 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26625890 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26625903 ACTTAGGGGG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:26633361 original size:46 final size:45
Alignment explanation
Indices: 26633311--26633482 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
26633301 TGGTTGAGCA
26633311 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
26633357 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
26633403 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
26633449 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26633483 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:26633465 original size:92 final size:92
Alignment explanation
Indices: 26633308--26633477 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
26633298 GGATGGTTGA
* *
26633308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26633373 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
26633400 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26633465 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26633478 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:26634858 original size:43 final size:43
Alignment explanation
Indices: 26634791--26634921 Score: 203
Period size: 43 Copynumber: 3.1 Consensus size: 43
26634781 GGGCGTTACA
*
26634791 CTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACTAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGC
*
26634834 CTGCTAGGCACGAAGACCCGAATACACATCACCGGCACTAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGC
* * *
26634877 CTGCTAGGCACGAAGGCCCGAATATA-AT-ACCAGCACTAGGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGC
26634918 CTGC
1 CTGC
26634922 GGGATTTATC
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 15 0.18
42 2 0.02
43 65 0.79
ACGTcount: A:0.31, C:0.34, G:0.22, T:0.13
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGC
Found at i:26634947 original size:38 final size:38
Alignment explanation
Indices: 26634893--26634976 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
26634883 GGCACGAAGG
* * *
26634893 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
26634931 CCCGGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
26634969 CCCGAATA
1 CCCGAATA
26634977 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:26636045 original size:2 final size:2
Alignment explanation
Indices: 26636022--26636059 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
26636012 CACTTTCAAA
*
26636022 AT AT A- AT AT A- AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26636060 TCGACTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:26647285 original size:38 final size:39
Alignment explanation
Indices: 26647233--26647375 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
26647223 GAATGTTCGA
26647233 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
26647272 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
26647310 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
26647349 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
26647376 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:26647321 original size:77 final size:79
Alignment explanation
Indices: 26647234--26647415 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
26647224 AATGTTCGAG
26647234 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
26647297 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
26647311 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
26647376 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
26647390 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
26647416 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:26655308 original size:39 final size:39
Alignment explanation
Indices: 26655254--26655397 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
26655244 GAATGTTCGA
26655254 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
26655293 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
26655332 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
26655371 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
26655398 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:26655344 original size:78 final size:79
Alignment explanation
Indices: 26655255--26655437 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
26655245 AATGTTCGAG
26655255 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
26655319 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
26655333 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
26655398 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
26655412 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
26655438 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:26659903 original size:42 final size:41
Alignment explanation
Indices: 26659784--26659904 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 41
26659774 CATACAATAC
* *
26659784 CATACCAATGCCATATCCTAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCA-ATCCTAGATATGGTCTTACACGGGATCT
* * *
26659826 CATATCGATGCCAATAGCCCAGCTATGGTCTTACACGAGG-TCT
1 CATATCAATGCCAAT--CCTAGATATGGTCTTACACG-GGATCT
*
26659869 CATATCAATACCACATCCTAGATATGGTCTTACACG
1 CATATCAATGCCA-ATCCTAGATATGGTCTTACACG
26659905 TAATCTTAGT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
41 2 0.03
42 29 0.44
43 31 0.47
44 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (41 bp):
CATATCAATGCCAATCCTAGATATGGTCTTACACGGGATCT
Found at i:26661155 original size:44 final size:44
Alignment explanation
Indices: 26661087--26661175 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
26661077 AGAAAACTAA
*
26661087 ACCCATAAAATATCATGATAGTCACAATAATAATCAATCAAAGT
1 ACCCATAAAATATCATGATAGTCACAATAATAATCAATAAAAGT
*
26661131 ACCCATAAAATATCATGATGGTCACAATAATAATCAATAAAAGT
1 ACCCATAAAATATCATGATAGTCACAATAATAATCAATAAAAGT
26661175 A
1 A
26661176 TAACAACATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.51, C:0.17, G:0.08, T:0.25
Consensus pattern (44 bp):
ACCCATAAAATATCATGATAGTCACAATAATAATCAATAAAAGT
Found at i:26661160 original size:22 final size:22
Alignment explanation
Indices: 26661091--26661160 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
26661081 AACTAAACCC
26661091 ATAAAATATCATGATAGTCACA
1 ATAAAATATCATGATAGTCACA
* * * *
26661113 ATAATA-ATCAATCAAAGT-ACCC
1 ATAAAATATC-ATGATAGTCA-CA
*
26661135 ATAAAATATCATGATGGTCACA
1 ATAAAATATCATGATAGTCACA
26661157 ATAA
1 ATAA
26661161 TAATCAATAA
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
21 4 0.11
22 27 0.77
23 4 0.11
ACGTcount: A:0.50, C:0.16, G:0.09, T:0.26
Consensus pattern (22 bp):
ATAAAATATCATGATAGTCACA
Found at i:26662317 original size:18 final size:18
Alignment explanation
Indices: 26662296--26662475 Score: 82
Period size: 19 Copynumber: 9.7 Consensus size: 18
26662286 TATCATAACT
* * *
26662296 AGAATCAAAATTAGAATC
1 AGAATCAGAATCAAAATC
*
26662314 AGAATCAGAATCAGAATC
1 AGAATCAGAATCAAAATC
*
26662332 AG-GTGACAGAATCAAAATC
1 AGAAT--CAGAATCAAAATC
* * *
26662351 AGAACCAGAATCAGAATT
1 AGAATCAGAATCAAAATC
*
26662369 AGGTAA-CAGAATCAGAATC
1 A-G-AATCAGAATCAAAATC
* *
26662388 AGTATCAGGTAA-CAGAATC
1 AGAATCA-G-AATCAAAATC
* *
26662407 AGAATCAGAACCAGAATC
1 AGAATCAGAATCAAAATC
* *
26662425 AGAATTAGGTAA-CAGAATC
1 AGAATCA-G-AATCAAAATC
* *
26662444 AGAATCAGTATCAGGTAA-C
1 AGAATCAGAATCA--AAATC
26662463 AGAATCAGAATCA
1 AGAATCAGAATCA
26662476 GAATGTGAAT
Statistics
Matches: 132, Mismatches: 16, Indels: 27
0.75 0.09 0.15
Matches are distributed among these distances:
17 5 0.04
18 50 0.38
19 69 0.52
20 8 0.06
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (18 bp):
AGAATCAGAATCAAAATC
Found at i:26662319 original size:6 final size:6
Alignment explanation
Indices: 26662296--26662479 Score: 153
Period size: 6 Copynumber: 29.8 Consensus size: 6
26662286 TATCATAACT
* * *
26662296 AGAATC AAAATT AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
26662345 AAAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
26662394 AGGTAA-C AGAATC AGAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
26662444 AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
26662480 GTGAATGCAA
Statistics
Matches: 143, Mismatches: 20, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
5 9 0.06
6 114 0.80
7 13 0.09
8 7 0.05
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:26662344 original size:25 final size:24
Alignment explanation
Indices: 26662296--26662479 Score: 153
Period size: 25 Copynumber: 7.5 Consensus size: 24
26662286 TATCATAACT
* *
26662296 AGAATCAAAATTAGAATCAGAATC
1 AGAATCAGAATCAGAATCAGAATC
*
26662320 AGAATCAGAATCAG-GTGACAGAATC
1 AGAATCAGAATCAGAAT--CAGAATC
* * *
26662345 AAAATCAGAACCAGAATCAGAATT
1 AGAATCAGAATCAGAATCAGAATC
*
26662369 AGGTAA-CAGAATCAGAATCAGTATC
1 A-G-AATCAGAATCAGAATCAGAATC
*
26662394 AGGTAA-CAGAATCAGAATCAGAACC
1 A-G-AATCAGAATCAGAATCAGAATC
*
26662419 AGAATCAGAATTAGGTAA-CAGAATC
1 AGAATCAGAATCA-G-AATCAGAATC
*
26662444 AGAATCAGTATCAGGTAA-CAGAATC
1 AGAATCAGAATCA-G-AATCAGAATC
26662469 AGAATCAGAAT
1 AGAATCAGAAT
26662480 GTGAATGCAA
Statistics
Matches: 134, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
23 3 0.02
24 27 0.20
25 99 0.74
26 5 0.04
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGAATC
Found at i:26662416 original size:37 final size:37
Alignment explanation
Indices: 26662308--26662479 Score: 151
Period size: 37 Copynumber: 4.6 Consensus size: 37
26662298 AATCAAAATT
*
26662308 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
26662345 AAAATCAGAACCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
26662382 AGAATCAGTATCAGGTAA-CAGAATCA-G-AATCAGAACC
1 AGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATC
* *
26662419 AGAATCAGAATTAGGTAA-CAGAATCA-G-AATCAGTATC
1 AGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATC
26662456 AGGTAA-CAGAATCAGAATCAGAAT
1 A-G-AATCAGAATCAGAATCAGAAT
26662480 GTGAATGCAA
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
36 4 0.03
37 91 0.79
38 16 0.14
39 4 0.03
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:26662470 original size:19 final size:19
Alignment explanation
Indices: 26662319--26662451 Score: 130
Period size: 19 Copynumber: 6.8 Consensus size: 19
26662309 GAATCAGAAT
*
26662319 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
*
26662338 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
26662355 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
26662375 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
26662400 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
26662417 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
26662437 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
26662452 TATCAGGTAA
Statistics
Matches: 95, Mismatches: 7, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
17 3 0.03
18 27 0.28
19 42 0.44
20 4 0.04
21 1 0.01
23 1 0.01
25 17 0.18
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:26662478 original size:62 final size:62
Alignment explanation
Indices: 26662308--26662476 Score: 98
Period size: 62 Copynumber: 2.7 Consensus size: 62
26662298 AATCAAAATT
* * * * * * *
26662308 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAGAACCA-G-AATCAGAATT
1 AGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAA-CAGAATC
* * * * * *
26662369 AGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCA-G-AATCAGAATT
1 A-G-AATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAA-CAGAATC
* * *
26662431 AGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAG
1 A-G-AATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAG
26662477 AATGTGAATG
Statistics
Matches: 103, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
61 1 0.01
62 100 0.97
63 2 0.02
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (62 bp):
AGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATC
Found at i:26662640 original size:27 final size:26
Alignment explanation
Indices: 26662598--26662649 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
26662588 GCGAGACTGC
*
26662598 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
26662624 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
26662650 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:26662690 original size:67 final size:67
Alignment explanation
Indices: 26662582--26662735 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 67
26662572 CACCACAGAA
*
26662582 ATTGCAGCGAGACTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
26662647 AG
66 AG
*
26662649 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACT
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
26662714 AG
66 AG
26662716 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
26662736 ACGCTTCCTC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 85 1.00
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:26663019 original size:27 final size:27
Alignment explanation
Indices: 26662979--26663343 Score: 389
Period size: 27 Copynumber: 13.6 Consensus size: 27
26662969 TACCCCACAA
* * *
26662979 GGTATCTCGGTAATTCCACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
* *
26663006 GATATTTTAGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
26663033 GGTATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
* *
26663060 GGTATTGC-GATAATTCTACCCTACAGG
1 GGTATTTCAG-TAATTCTACCCTATAGG
* *
26663087 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
*
26663114 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
* *
26663141 GGTATTTCGGTAATTCTACCTTACT-GG
1 GGTATTTCAGTAATTCTACCCTA-TAGG
* * *
26663168 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCAGTAATTCTACCCTATAGG
*
26663195 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
* *
26663222 GGTA-TTCGGTAATTCTACCTTACTA-G
1 GGTATTTCAGTAATTCTACCCTA-TAGG
* * *
26663248 GGTATTTTAGTAATTCTACCCTACAAG
1 GGTATTTCAGTAATTCTACCCTATAGG
** * **
26663275 GGTATTTTGGTAATTTTA-CAAACTAGG
1 GGTATTTCAGTAATTCTACCCTA-TAGG
* ** *
26663302 GGTGTTTTGGTAATTCTACCATATAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
26663329 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
26663344 TCACAATCGA
Statistics
Matches: 291, Mismatches: 38, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.09
27 262 0.90
28 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTATAGG
Found at i:26663093 original size:81 final size:81
Alignment explanation
Indices: 26662962--26663343 Score: 457
Period size: 81 Copynumber: 4.7 Consensus size: 81
26662952 GGGCAAAATG
* * * * * * * *
26662962 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTATAGGGATATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
* *
26663026 CTATAGGGGTATTTCA
66 CTACAAGGGTATTTCA
* * * *
26663042 GTAATTCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
26663107 CTACAGGGGTATTTCA
66 CTACAAGGGTATTTCA
* * *
26663123 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACTGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
26663188 CTACAAGGGTATTTCA
66 CTACAAGGGTATTTCA
* *
26663204 GTAATTCTACCCTACAGGGGTA-TTCGGTAATTCTACCTTACTA-GGGTATTTTAGTAATTCTAC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAC-AGGGGTATTTCAGTAATTCTAC
**
26663267 CCTACAAGGGTATTTTG
65 CCTACAAGGGTATTTCA
* ** * * * *
26663284 GTAATTTTA-CAAACTAGGGGTGTTTTGGTAATTCTACCATATAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTAC-AGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATT
26663344 TCACAATCGA
Statistics
Matches: 265, Mismatches: 32, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
79 3 0.01
80 80 0.30
81 182 0.69
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCA
Found at i:26663366 original size:134 final size:134
Alignment explanation
Indices: 26662961--26663369 Score: 350
Period size: 134 Copynumber: 3.1 Consensus size: 134
26662951 GGGGCAAAAT
* * * * * * * **
26662961 GGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTA-TAGGGATATTTTAGTAATTCTA
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGG-TATTTCGGTAATTCTA
** * * * * * **
26663024 CCCTA-TAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTGC-GATAATTCTACCCTACAGG
65 CCAAACT-GGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCAG-TAATTCTACAATACAGG
**
26663087 GGTATTTC
128 GGTA-AAC
*
26663095 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC
** * **
26663160 CTTACTGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGT
66 CAAACTGGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCAGTAATTCTACAATACAGGGGT
**
26663225 ATTC
131 AAAC
* * * *
26663229 GGTAATTCTACCTTACTA-GGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTA
1 GGTAATTCTACCCTAC-AGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA
* * * *
26663293 -CAAACTAGGGGTGTTTTGGTAATTCTACCATATAGGGGTATTTCAGTAATT-TCACAAT-C-GA
65 CCAAACT-GGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCAGTAATTCT-ACAATACAG-
26663354 GGGTAAAAC
127 GGGT-AAAC
26663363 GGTAATT
1 GGTAATT
26663370 TTGTAAATCA
Statistics
Matches: 235, Mismatches: 31, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
132 1 0.00
133 10 0.04
134 126 0.54
135 93 0.40
136 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (134 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC
CAAACTGGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCAGTAATTCTACAATACAGGGGT
AAAC
Found at i:26663378 original size:27 final size:27
Alignment explanation
Indices: 26663348--26663765 Score: 374
Period size: 27 Copynumber: 15.4 Consensus size: 27
26663338 GTAATTTCAC
**
26663348 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* * *
26663375 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* * * *
26663402 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*** *
26663429 AATCGAGGGTACTTTGGTAATTTT-TA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* ** **
26663455 CCAGTCGAGGGT-ATTTCAGTAATTTTACA
1 --AATCGAGGGTAAAAT-AGTAATTTTGTA
* *** **
26663484 AATCAGGGGGTATTTTAGTAATTTTACA
1 AATC-GAGGGTAAAATAGTAATTTTGTA
* *** *
26663512 AA-CCAGGGGTATTTTAGTAATTTTCTA
1 AATCGA-GGGTAAAATAGTAATTTTGTA
* * *
26663539 AATCGAGGGTAAAATGGTAATTCTCTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* * *
26663566 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* ** *
26663593 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
26663620 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
* * * *
26663647 ATTCAAGGGTAAAATAGTAACTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
26663674 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
*
26663701 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
26663728 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTA
26663755 AATCGAGGGTA
1 AATCGAGGGTA
26663766 CTTTGGTAAT
Statistics
Matches: 335, Mismatches: 48, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 291 0.87
28 38 0.11
29 4 0.01
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTTTGTA
Found at i:26663451 original size:81 final size:81
Alignment explanation
Indices: 26663363--26663778 Score: 415
Period size: 81 Copynumber: 5.1 Consensus size: 81
26663353 AGGGTAAAAC
* * * *
26663363 GGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAATAATTCTAT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
26663428 AAATCGAGGGTACTTT
66 AAATCGAGGGTACTTT
* ** * ** * ***
26663444 GGTAATTTT-TACCAGTCGAGGGT-ATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATT
1 GGTAATTTTGTA--AATCGAGGGTAAAAT-AGTAATTCTGTAAATC-GAGGGTAAAATAGTAATT
* * * *
26663507 TTACAAA-CCAGGGGTATTTT
62 CTATAAATCGA-GGGTACTTT
* * * * *
26663527 AGTAATTTTCTAAATCGAGGGTAAAATGGTAATTCTCTAAATCGAGGGTAAAATGGTAATTCTAT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
****
26663592 AAATCGAGGGTAGAAC
66 AAATCGAGGGTACTTT
* * * * * *
26663608 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAATTCAAGGGTAAAATAGTAACTCTGT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
***
26663673 AAATCGAGGGTAAAAT
66 AAATCGAGGGTACTTT
* * *
26663689 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
26663754 AAATCGAGGGTACTTT
66 AAATCGAGGGTACTTT
26663770 GGTAATTTT
1 GGTAATTTT
26663779 ACATGTCGAG
Statistics
Matches: 265, Mismatches: 62, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
80 2 0.01
81 180 0.68
82 46 0.17
83 35 0.13
84 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
AAATCGAGGGTACTTT
Found at i:26663487 original size:55 final size:54
Alignment explanation
Indices: 26663419--26663549 Score: 131
Period size: 55 Copynumber: 2.4 Consensus size: 54
26663409 GGTAAAACAA
* * * * **
26663419 TAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAGTC-GAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTACTTTAGTAA-TTTTACAAACCAG-GGGTATTTCAG
* * *
26663474 TAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAG
1 TAATTTTACAAATC-GAGGGTACTTTAGTAATTTTACAAACCAGGGGTATTTCAG
26663529 TAATTTT-CTAAATCGAGGGTA
1 TAATTTTAC-AAATCGAGGGTA
26663550 AAATGGTAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
54 7 0.11
55 42 0.67
56 14 0.22
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (54 bp):
TAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACCAGGGGTATTTCAG
Found at i:26663494 original size:28 final size:27
Alignment explanation
Indices: 26663463--26663535 Score: 119
Period size: 28 Copynumber: 2.7 Consensus size: 27
26663453 TACCAGTCGA
* *
26663463 GGGTATTTCAGTAATTTTACAAATCAGG
1 GGGTATTTTAGTAATTTTACAAACCA-G
26663491 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACCAG
26663518 GGGTATTTTAGTAATTTT
1 GGGTATTTTAGTAATTTT
26663536 CTAAATCGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 19 0.44
28 24 0.56
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACCAG
Found at i:26663577 original size:191 final size:189
Alignment explanation
Indices: 26663273--26663630 Score: 479
Period size: 191 Copynumber: 1.9 Consensus size: 189
26663263 CTACCCTACA
** * * * *
26663273 AGGGTATTTTGGTAATTTTACAAACTAGGGGTGTTTTGGTAATTCTACCATATAGGGGTATTTCA
1 AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTCTACCAAACAGGGGTATTTCA
* * *
26663338 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAA
66 GTAATTTCACAATCGAGGGTAAAACGGTAATTCTCTAAATCAAGGGTAAAACAGTAATTCTATAA
26663403 ATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAGTCG
131 ATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAGTCG
*
26663462 AGGGTATTTCAGTAATTTTACAAA-TCAGGGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATT
1 AGGGTATTTCAGTAATTTTACAAACT-A-GGGGTATTTTAGTAATTCTACCAAA-CAGGGGTATT
* * * **
26663525 TTAGTAATTTTCTA-AATCGAGGGTAAAATGGTAATTCTCTAAATCGAGGGTAAAATGGTAATTC
63 TCAGTAA-TTTC-ACAATCGAGGGTAAAACGGTAATTCTCTAAATCAAGGGTAAAACAGTAATTC
* ** *
26663589 TATAAATCGAGGGTAGAACGGTAATTCTGTAAATCGAGGGTA
126 TATAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTA
26663631 AAATAGTAAT
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
188 1 0.01
189 26 0.18
190 32 0.22
191 85 0.59
192 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (189 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTCTACCAAACAGGGGTATTTCA
GTAATTTCACAATCGAGGGTAAAACGGTAATTCTCTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACCAGTCG
Found at i:26663774 original size:27 final size:27
Alignment explanation
Indices: 26663364--26663886 Score: 288
Period size: 27 Copynumber: 19.3 Consensus size: 27
26663354 GGGTAAAACG
* ***
26663364 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAATTTA
* ***
26663391 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAATTTA
* * * * *
26663418 ATAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTGTAAATCGAGGGTAATTTA
*
26663445 GTAATTTT-TACCAGTCGAGGGT-ATTTCA
1 GTAATTTTGTA--AATCGAGGGTAATTT-A
** * *
26663473 GTAATTTTACAAATCAGGGGGTATTTTA
1 GTAATTTTGTAAATC-GAGGGTAATTTA
** * *
26663501 GTAATTTTACAAA-CCAGGGGTATTTTA
1 GTAATTTTGTAAATCGA-GGGTAATTTA
* ** *
26663528 GTAATTTTCTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAATTTA
* * ** *
26663555 GTAATTCTCTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAATTTA
* * ***
26663582 GTAATTCTATAAATCGAGGGTAGA-ACG
1 GTAATTTTGTAAATCGAGGGTA-ATTTA
* **
26663609 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAATTTA
* * **
26663636 GTAATTTTGTAATTCAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAATTTA
* * **
26663663 GTAACTCTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAATTTA
**
26663690 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAATTTA
* **
26663717 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAATTTA
* *
26663744 GTAATTTTGTAAATCGAGGGTACTTTG
1 GTAATTTTGTAAATCGAGGGTAATTTA
** **
26663771 GTAATTTTACATGTCGAGGGT-ATTTCA
1 GTAATTTTGTAAATCGAGGGTAATTT-A
** *
26663798 GTAATTTTACAAA-CTGAGGGT-ATTTC
1 GTAATTTTGTAAATC-GAGGGTAATTTA
* * *
26663824 GATAATTTTGCAAATCGAGGAT-ATTTGG
1 G-TAATTTTGTAAATCGAGGGTAATTT-A
* * * *
26663852 GTAATTTTATAAACCGAGGGTACTTTG
1 GTAATTTTGTAAATCGAGGGTAATTTA
26663879 GTAATTTT
1 GTAATTTT
26663887 ACAACTGAGG
Statistics
Matches: 415, Mismatches: 65, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.02
27 359 0.87
28 44 0.11
29 4 0.01
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAATTTA
Found at i:26663788 original size:54 final size:53
Alignment explanation
Indices: 26663338--26663890 Score: 318
Period size: 54 Copynumber: 10.2 Consensus size: 53
26663328 GGGTATTTCA
* ** * * ****
26663338 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTTTACAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAATTTG
* * * *
26663391 GTAATTCTGTA-AATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTACTTTG
1 GTAATT-T-TACAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAATTTG
* ** * * * *
26663445 GTAATTTTTACCAGTCGAGGGT-ATTTCAGTAATTTTACAAATCAGGGGGTATTTTA
1 GTAA-TTTTA-CAATCGAGGGTAAAAT-AGTAATTTTATAAATC-GAGGGTAATTTG
* * *** * **
26663501 GTAATTTTACAAACCAGGGGTATTTTAGTAATTTTCTAAATCGAGGGTAAAATG
1 GTAATTTTACAATCGA-GGGTAAAATAGTAATTTTATAAATCGAGGGTAATTTG
* * **
26663555 GTAATTCTCTA-AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGA-ACG
1 GTAATT-T-TACAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTA-ATTTG
* * * ** *
26663609 GTAATTCTGTA-AATCGAGGGTAAAATAGTAATTTTGTAATTCAAGGGTAAAATA
1 GTAATT-T-TACAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAATTTG
* * ** *
26663663 GTAACTCTGTA-AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATA
1 GTAA-T-TTTACAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAATTTG
* *
26663717 GTAATTCTGTA-AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTACTTTG
1 GTAATT-T-TACAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAATTTG
* ** *
26663771 GTAATTTTACATGTCGAGGGT-ATTTCAGTAATTTTACAAA-CTGAGGGT-ATTTCG
1 GTAATTTTACA-ATCGAGGGTAAAAT-AGTAATTTTATAAATC-GAGGGTAATTT-G
* * * ** * * *
26663825 ATAATTTTGCAAATCGAGGAT-ATTTGGGTAATTTTATAAACCGAGGGTACTTTG
1 GTAATTTTAC-AATCGAGGGTAAAAT-AGTAATTTTATAAATCGAGGGTAATTTG
26663879 GTAATTTTACAA
1 GTAATTTTACAA
26663891 CTGAGGATAT
Statistics
Matches: 402, Mismatches: 73, Indels: 50
0.77 0.14 0.10
Matches are distributed among these distances:
52 3 0.01
53 20 0.05
54 300 0.75
55 60 0.15
56 19 0.05
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAATTTG
Found at i:26663830 original size:81 final size:80
Alignment explanation
Indices: 26663743--26663917 Score: 212
Period size: 81 Copynumber: 2.2 Consensus size: 80
26663733 AGGGTAAAAT
* ***
26663743 AGTAATTTTGTAAATCGAGGGTACTTT-GGTAATTTTACATGTCGAGGGTA-TTTCAGTAATTTT
1 AGTAATTTTGTAAATCGAGGATA-TTTGGGTAATTTTACAAACCGAGGGTACTTT-AGTAATTTT
*
26663806 ACAAACTGAGGGTATTTC
64 AC-AACTGAGGATATTTC
* * *
26663824 -GATAATTTTGCAAATCGAGGATATTTGGGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTA
1 AG-TAATTTTGTAAATCGAGGATATTTGGGTAATTTTACAAACCGAGGGTACTTTAGTAATTTTA
26663888 CAACTGAGGATATTTC
65 CAACTGAGGATATTTC
*
26663904 AGTAATTTGGTAAA
1 AGTAATTTTGTAAA
26663918 CTAAAGTATT
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
80 28 0.35
81 49 0.61
82 3 0.04
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (80 bp):
AGTAATTTTGTAAATCGAGGATATTTGGGTAATTTTACAAACCGAGGGTACTTTAGTAATTTTAC
AACTGAGGATATTTC
Found at i:26663887 original size:27 final size:27
Alignment explanation
Indices: 26663744--26663911 Score: 155
Period size: 27 Copynumber: 6.3 Consensus size: 27
26663734 GGGTAAAATA
**
26663744 GTAATTTTGTAAATCGAGGGTACTTT-G
1 GTAATTTTACAAATCGAGGGTA-TTTCG
** *
26663771 GTAATTTTACATGTCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCG
26663798 GTAATTTTACAAA-CTGAGGGTATTTCG
1 GTAATTTTACAAATC-GAGGGTATTTCG
* * * *
26663825 ATAATTTTGCAAATCGAGGATATTTGG
1 GTAATTTTACAAATCGAGGGTATTTCG
* *
26663852 GTAATTTTATAAACCGAGGGTACTTT-G
1 GTAATTTTACAAATCGAGGGTA-TTTCG
* * *
26663879 GTAATTTTACAACT-GAGGATATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCG
26663905 GTAATTT
1 GTAATTT
26663912 GGTAAACTAA
Statistics
Matches: 114, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.03
26 17 0.15
27 90 0.79
28 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCG
Found at i:26667428 original size:15 final size:15
Alignment explanation
Indices: 26667405--26667436 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26667395 ACTTAATATG
26667405 TATAAGTTATAATAA
1 TATAAGTTATAATAA
*
26667420 TATATGTTATAATAA
1 TATAAGTTATAATAA
26667435 TA
1 TA
26667437 AGAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (15 bp):
TATAAGTTATAATAA
Found at i:26667477 original size:26 final size:26
Alignment explanation
Indices: 26667427--26667479 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26667417 TAATATATGT
*
26667427 TATAATAATAAGAAATAAAATGAAAA
1 TATAATAATAAGAAATAAAAAGAAAA
26667453 TATAATAA-AAGAAATAATAAAGAAAA
1 TATAATAATAAGAAATAA-AAAGAAAA
26667479 T
1 T
26667480 GGAAAGAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.23
Consensus pattern (26 bp):
TATAATAATAAGAAATAAAAAGAAAA
Found at i:26667523 original size:14 final size:13
Alignment explanation
Indices: 26667503--26667538 Score: 63
Period size: 14 Copynumber: 2.7 Consensus size: 13
26667493 CATGCAAATT
26667503 AGAAAAGAAAGAA
1 AGAAAAGAAAGAA
26667516 ATGAAAAGAAAGAA
1 A-GAAAAGAAAGAA
26667530 AGAAAAGAA
1 AGAAAAGAA
26667539 GAAGAGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (13 bp):
AGAAAAGAAAGAA
Found at i:26671634 original size:32 final size:32
Alignment explanation
Indices: 26671598--26671661 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
26671588 GAAAATTTGC
*
26671598 ATGATTAAGTTCTATATGGACAATTCCATAAT
1 ATGATTAAGTTCCATATGGACAATTCCATAAT
*
26671630 ATGATTAAGTTCCATATGGATAATTCCATAAT
1 ATGATTAAGTTCCATATGGACAATTCCATAAT
26671662 TTTACTCTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (32 bp):
ATGATTAAGTTCCATATGGACAATTCCATAAT
Found at i:26678536 original size:96 final size:94
Alignment explanation
Indices: 26678371--26678731 Score: 275
Period size: 96 Copynumber: 3.8 Consensus size: 94
26678361 AATGCTGATA
* * * ** *
26678371 CCATGTCCCAGACATGGTCTTACACTGGATCATC-CATC-AAGTTGATGCTATGTCCCAGACATG
1 CCATGTCCCAAACATGGTCTTACACT-GA-CA-CAAATCGTAGCCGATGCCATGTCCCAGACATG
* *
26678434 GTCTTACACTGGCTCATC-CAT-CAAGT-TGATG
63 GTCTTACACTAGCTC-TCACATAC-AGTCCGATG
*
26678465 CCCTGTCCCAAACATGGTCTTACACTGACTATCGAAATCG-AGGCCGATGCCATGTCCCAGACAT
1 CCATGTCCCAAACATGGTCTTACACTGAC-A-C-AAATCGTA-GCCGATGCCATGTCCCAGACAT
*
26678529 GGTCTTACACTAGCTCTCACATATCCGTGCCGATG
62 GGTCTTACACTAGCTCTCACATA-CAGT-CCGATG
**
26678564 CCATGTCCCAAACATGGTCTTACACTGACACATCTCGTAGCCGATG-CATGTCCCAGACAT-GTC
1 CCATGTCCCAAACATGGTCTTACACTGACACAAATCGTAGCCGATGCCATGTCCCAGACATGGTC
* *
26678627 TTACAC-AGCT-T-ACATCTCGAGGCCGATG
66 TTACACTAGCTCTCACAT-AC-AGTCCGATG
* * * ** **
26678655 -CATCTCCCAGACAT-TTCTTACACT-AGCACTCATC-TCAATGCCGATGCCATGTCCCAGATGT
1 CCATGTCCCAAACATGGTCTTACACTGA-CACAAATCGT--A-GCCGATGCCATGTCCCAGACAT
26678716 GGTCTTACACTAGCTC
62 GGTCTTACACTAGCTC
26678732 ACAATAACCT
Statistics
Matches: 223, Mismatches: 23, Indels: 41
0.78 0.08 0.14
Matches are distributed among these distances:
88 2 0.01
89 14 0.06
90 13 0.06
91 18 0.08
92 15 0.07
93 18 0.08
94 37 0.17
95 20 0.09
96 48 0.22
97 4 0.02
98 2 0.01
99 32 0.14
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (94 bp):
CCATGTCCCAAACATGGTCTTACACTGACACAAATCGTAGCCGATGCCATGTCCCAGACATGGTC
TTACACTAGCTCTCACATACAGTCCGATG
Found at i:26678624 original size:45 final size:46
Alignment explanation
Indices: 26678371--26678726 Score: 255
Period size: 47 Copynumber: 7.6 Consensus size: 46
26678361 AATGCTGATA
* **
26678371 CCATGTCCCAGACATGGTCTTACACTGGA-TCATCCATC-AAGTTGATG
1 CCATGTCCCAGACATGGTCTTACACT-GACACAT-C-TCGAAGCCGATG
* * * **
26678418 CTATGTCCCAGACATGGTCTTACACTGGCTCATCCATC-AAGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTGACACAT-C-TCGAAGCCGATG
* * ** *
26678465 CCCTGTCCCAAACATGGTCTTACACTGACTATCGAAATCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAC-A-C-ATCTCGAAGCCGATG
* * *
26678514 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-TGCCGATG
1 CCATGTCCCAGACATGGTCTTACACT-G---ACACATCT-CGAAGCCGATG
* *
26678564 CCATGTCCCAAACATGGTCTTACACTGACACATCTCGTAGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACACATCTCGAAGCCGATG
* *
26678610 -CATGTCCCAGACAT-GTCTTACACAG-CTTACATCTCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGAAGCCGATG
* * *
26678655 -CATCTCCCAGACAT-TTCTTACACTAGCACTCATCTC-AATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGAA-GCCGATG
**
26678701 CCATGTCCCAGATGTGGTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
26678727 AGCTCACAAT
Statistics
Matches: 256, Mismatches: 34, Indels: 37
0.78 0.10 0.11
Matches are distributed among these distances:
43 1 0.00
44 10 0.04
45 52 0.20
46 28 0.11
47 79 0.31
48 12 0.05
49 32 0.12
50 37 0.14
51 3 0.01
52 1 0.00
53 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.26
Consensus pattern (46 bp):
CCATGTCCCAGACATGGTCTTACACTGACACATCTCGAAGCCGATG
Found at i:26680663 original size:2 final size:2
Alignment explanation
Indices: 26680658--26680691 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
26680648 ATCATCCATC
*
26680658 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26680692 CCATTTTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:26686669 original size:34 final size:34
Alignment explanation
Indices: 26686631--26686797 Score: 160
Period size: 34 Copynumber: 4.9 Consensus size: 34
26686621 AAGCAAATTT
*
26686631 ATTGCTACCGTAATGATCTGTTATAAGCATGTTA
1 ATTGCTACTGTAATGATCTGTTATAAGCATGTTA
* * *
26686665 ATTGCTACTGT-ATCGATTTGTTATAAGCAAGTTT
1 ATTGCTACTGTAAT-GATCTGTTATAAGCATGTTA
* * *
26686699 ATTGCTACTGTAATGATCTATTATAATCATGATA
1 ATTGCTACTGTAATGATCTGTTATAAGCATGTTA
* * * *
26686733 ATTGTTATTGT-ATCAACTTGTTATAAGCATGTT-
1 ATTGCTACTGTAATGATC-TGTTATAAGCATGTTA
* * * *
26686766 ACTGCTACCGTATTGATTTGTTATAAGCATGT
1 ATTGCTACTGTAATGATCTGTTATAAGCATGT
26686798 CATGTTGCAT
Statistics
Matches: 104, Mismatches: 25, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
33 27 0.26
34 75 0.72
35 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43
Consensus pattern (34 bp):
ATTGCTACTGTAATGATCTGTTATAAGCATGTTA
Found at i:26686735 original size:68 final size:68
Alignment explanation
Indices: 26686619--26686796 Score: 232
Period size: 68 Copynumber: 2.6 Consensus size: 68
26686609 CAAATGCATG
* * * *
26686619 ATAAGCAAATTTATTGCTACCGTAATGATCTGTTATAAGCATGTTAATTGCTACTGTATCGATTT
1 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAGCATGATAATTGCTACTGTATCAACTT
26686684 GTT
66 GTT
* * * * *
26686687 ATAAGCAAGTTTATTGCTACTGTAATGATCTATTATAATCATGATAATTGTTATTGTATCAACTT
1 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAGCATGATAATTGCTACTGTATCAACTT
26686752 GTT
66 GTT
* * * *
26686755 ATAAGCATG-TTACTGCTACCGTATTGATTTGTTATAAGCATG
1 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAGCATG
26686797 TCATGTTGCA
Statistics
Matches: 94, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
67 27 0.29
68 67 0.71
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (68 bp):
ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAGCATGATAATTGCTACTGTATCAACTT
GTT
Found at i:26689546 original size:14 final size:14
Alignment explanation
Indices: 26689529--26689558 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26689519 CATAAAATTT
26689529 AAAAAAAAAAAAAG
1 AAAAAAAAAAAAAG
*
26689543 AAAAAAAGAAAAAG
1 AAAAAAAAAAAAAG
26689557 AA
1 AA
26689559 GAAGCCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:26689560 original size:9 final size:8
Alignment explanation
Indices: 26689529--26689561 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
26689519 CATAAAATTT
26689529 AAAAAA-A
1 AAAAAAGA
26689536 AAAAAAGA
1 AAAAAAGA
26689544 AAAAAAGA
1 AAAAAAGA
26689552 AAAAGAAGA
1 AAAA-AAGA
26689561 A
1 A
26689562 GCCAAATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 6 0.25
8 13 0.54
9 5 0.21
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:26696379 original size:94 final size:94
Alignment explanation
Indices: 26696274--26696495 Score: 295
Period size: 94 Copynumber: 2.4 Consensus size: 94
26696264 ACACCACAAG
* **
26696274 CTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCCGATGCATGTCCCAG
1 CTGATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAG
**
26696339 ACATGTCTTACACTAGCTCTTGT-CTCAAT-A
65 ACATGTCTTACACTAGCTCTCATACT--ATGA
* * * **
26696369 CTGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTGATGCATGTCTTAGA
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAGA
*
26696434 CATGTCTTACACTAGCTCTCATACTATGG
66 CATGTCTTACACTAGCTCTCATACTATGA
*
26696463 CTGATGCATGTCCCAGAAATGTCTTACACTAGC
1 CTGATGCATGTCCCAGACATGTCTTACACTAGC
26696496 ACACATATCA
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
93 2 0.02
94 102 0.91
95 8 0.07
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (94 bp):
CTGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCTCTCATACTATGA
Found at i:26696389 original size:46 final size:47
Alignment explanation
Indices: 26696273--26696495 Score: 249
Period size: 46 Copynumber: 4.7 Consensus size: 47
26696263 CACACCACAA
* * *
26696273 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGC-TCTATATCTCGAG
* * * *
26696322 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-TGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAG
* *
26696368 ACTGATGCATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCT--ATATCTCGAG
**
26696416 GCTGATGCATGTCTTAGACATGTCTTACACTAGCTCTCATA-CT--ATG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCT-ATATCTCGA-G
*
26696462 GCTGATGCATGTCCCAGAAATGTCTTACACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
26696496 ACACATATCA
Statistics
Matches: 148, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.01
46 69 0.47
47 4 0.03
48 66 0.45
49 7 0.05
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTATATCTCGAG
Found at i:26700648 original size:26 final size:26
Alignment explanation
Indices: 26700612--26700773 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
26700602 TGATACAAAT
*
26700612 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26700638 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26700664 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
26700690 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
26700716 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
26700742 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26700768 TGATAA
1 TGATAA
26700774 GAATTTCATG
Statistics
Matches: 131, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 131 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:26702311 original size:26 final size:26
Alignment explanation
Indices: 26702259--26702311 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26702249 TTTACAATTT
*
26702259 TACCCCTAGGTGATAAATTATCGAAA
1 TACCCCTAGGTGATAAATTACCGAAA
* *
26702285 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTGATAAATT-ACCGAAA
26702311 T
1 T
26702312 GCATATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (26 bp):
TACCCCTAGGTGATAAATTACCGAAA
Found at i:26709212 original size:22 final size:22
Alignment explanation
Indices: 26709187--26709235 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
26709177 ACGGGTTTAG
*
26709187 CACTTTTGTGCTCTGTG-TTCAA
1 CACTTTTGTGCTCTCTGCTT-AA
26709209 CACTTTTGTGCTCTCTGCTTAA
1 CACTTTTGTGCTCTCTGCTTAA
26709231 CACTT
1 CACTT
26709236 CAATGCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.14, C:0.27, G:0.14, T:0.45
Consensus pattern (22 bp):
CACTTTTGTGCTCTCTGCTTAA
Found at i:26716612 original size:13 final size:13
Alignment explanation
Indices: 26716596--26716620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26716586 AATTATAAAA
26716596 TATATTTTTAATT
1 TATATTTTTAATT
26716609 TATATTTTTAAT
1 TATATTTTTAAT
26716621 AATAAATTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATTTTTAATT
Found at i:26717026 original size:5 final size:5
Alignment explanation
Indices: 26717016--26717057 Score: 66
Period size: 5 Copynumber: 8.2 Consensus size: 5
26717006 TTAACTATAT
*
26717016 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTATGA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA T
26717058 ATTTTAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:26719489 original size:42 final size:42
Alignment explanation
Indices: 26719443--26719557 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
26719433 GTATGTGTTA
* * *
26719443 TCATGTAAGACCATATCTGGGATATGGCATTGATATGAGATT
1 TCATGTAAGACCAAATCTGGGATATGGCATCGAAATGAGATT
* ** * * *
26719485 TCATGTAAAACCACGTCTAGGACATGACATCGAAATGAGATT
1 TCATGTAAGACCAAATCTGGGATATGGCATCGAAATGAGATT
** * *
26719527 TTGTATAAGACCAAATCTGAGATATGGCATC
1 TCATGTAAGACCAAATCTGGGATATGGCATC
26719558 AATGTGAGAT
Statistics
Matches: 55, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (42 bp):
TCATGTAAGACCAAATCTGGGATATGGCATCGAAATGAGATT
Found at i:26725136 original size:69 final size:68
Alignment explanation
Indices: 26725063--26725304 Score: 270
Period size: 69 Copynumber: 3.5 Consensus size: 68
26725053 CATAGCTCAG
*
26725063 CTATGACAACCAATAAAGTCCGTTGGGATAATAAACACGAGGATTAAAAGGTGTAAGACCATAGC
1 CTATGACAACCAATAAAGTCCGTTGGGACAATAAACACGAGGATTAAAA-GTGTAAGACCATAGC
26725128 TTGA
65 TTGA
* * ** * * * *
26725132 CTATGGCAACCAATAAAGTCTGCGGGGACAATAAGCACAAAGATTATAATGTGTAAGACCATAGC
1 CTATGACAACCAATAAAGTCCGTTGGGACAATAAACACGAGGATTA-AAAGTGTAAGACCATAGC
26725197 TTGA
65 TTGA
* * *** * *
26725201 CTATGACAACTAATAGAA-TCCATCAAGACAATAATCACGAGGATTATAAAATGTAAGACCATAG
1 CTATGACAACCAATA-AAGTCCGTTGGGACAATAAACACGAGGATTA-AAAGTGTAAGACCATAG
*
26725265 CTCGA
64 CTTGA
* *
26725270 CTATGACAACTAATAGAGTCCGTTGGGACAATAAA
1 CTATGACAACCAATAAAGTCCGTTGGGACAATAAA
26725305 TACGGAAAAG
Statistics
Matches: 141, Mismatches: 29, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
68 1 0.01
69 136 0.96
70 4 0.03
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.22
Consensus pattern (68 bp):
CTATGACAACCAATAAAGTCCGTTGGGACAATAAACACGAGGATTAAAAGTGTAAGACCATAGCT
TGA
Found at i:26730586 original size:5 final size:5
Alignment explanation
Indices: 26730548--26730583 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
26730538 TATGTAAAAA
26730548 TTTTC TTTTC TTTTC TTTTC TTTT- TTTT- TTTT- TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
26730584 TTTGTATTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 12 0.39
5 19 0.61
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (5 bp):
TTTTC
Found at i:26736555 original size:14 final size:14
Alignment explanation
Indices: 26736536--26736563 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26736526 ACAGTGATGA
26736536 GGAACAACAAAGCT
1 GGAACAACAAAGCT
26736550 GGAACAACAAAGCT
1 GGAACAACAAAGCT
26736564 TGTCCCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.21, T:0.07
Consensus pattern (14 bp):
GGAACAACAAAGCT
Found at i:26751070 original size:11 final size:11
Alignment explanation
Indices: 26751054--26751078 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26751044 TTCTTCTATA
26751054 CACAATAATAT
1 CACAATAATAT
26751065 CACAATAATAT
1 CACAATAATAT
26751076 CAC
1 CAC
26751079 TTAAACCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (11 bp):
CACAATAATAT
Found at i:26756413 original size:54 final size:56
Alignment explanation
Indices: 26756315--26756422 Score: 139
Period size: 55 Copynumber: 2.0 Consensus size: 56
26756305 AAATTTAATT
* * * *
26756315 TTTTCAATAATTTAAAGCTCTATTTTTTTAGATTAGATT-TTTTTTATAAATTTTA
1 TTTTCAACAATTTAAAGCTCTATCTTTTTAGATAAGATTATTTTTGATAAATTTTA
* * *
26756370 TTTTCAACAATTTAATGCTTTA-CTTTTTAGATAAGATTATTTTTGTTAAATTT
1 TTTTCAACAATTTAAAGCTCTATCTTTTTAGATAAGATTATTTTTGATAAATTT
26756423 AGATTCATTG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 14 0.31
55 31 0.69
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (56 bp):
TTTTCAACAATTTAAAGCTCTATCTTTTTAGATAAGATTATTTTTGATAAATTTTA
Found at i:26758938 original size:24 final size:24
Alignment explanation
Indices: 26758911--26758958 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26758901 AAAAAAAAAA
26758911 GATAATTTGCAAATATACTGATAT
1 GATAATTTGCAAATATACTGATAT
26758935 GATAATTTGCAAATATACTGATAT
1 GATAATTTGCAAATATACTGATAT
26758959 AGCTATGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (24 bp):
GATAATTTGCAAATATACTGATAT
Found at i:26759638 original size:10 final size:10
Alignment explanation
Indices: 26759623--26759655 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
26759613 AACCAATTCG
26759623 AAACACGATC
1 AAACACGATC
26759633 AAACACGATC
1 AAACACGATC
*
26759643 AAACACAATC
1 AAACACGATC
26759653 AAA
1 AAA
26759656 ACATGTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.58, C:0.27, G:0.06, T:0.09
Consensus pattern (10 bp):
AAACACGATC
Found at i:26759664 original size:20 final size:21
Alignment explanation
Indices: 26759623--26759672 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
26759613 AACCAATTCG
*
26759623 AAACACGATC-AAACACGATC
1 AAACACAATCAAAACACGATC
*
26759643 AAACACAATCAAAACATG-TC
1 AAACACAATCAAAACACGATC
26759663 AAA-ACAATCA
1 AAACACAATCA
26759673 TCCTAGGTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 7 0.26
20 14 0.52
21 6 0.22
ACGTcount: A:0.56, C:0.26, G:0.06, T:0.12
Consensus pattern (21 bp):
AAACACAATCAAAACACGATC
Found at i:26760427 original size:40 final size:38
Alignment explanation
Indices: 26760372--26760504 Score: 124
Period size: 37 Copynumber: 3.4 Consensus size: 38
26760362 ATCAGTTTGG
*
26760372 CACCCAGTGCCTCATCGGATAATTCGAAGAAATAAATTGA
1 CACCCAGTGCCTCATCGGATAAATCGAAG--ATAAATTGA
* * * *
26760412 CACCCAGTGACTCATCGGTTAAACCGAAG-TAAATTGG
1 CACCCAGTGCCTCATCGGATAAATCGAAGATAAATTGA
* **
26760449 CACCTAGTGCCTCATCAAATAAATCTGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGGATAAATC-GAAG-A-TAAATTGA
* *
26760490 CACCTAGTGTCTCAT
1 CACCCAGTGCCTCAT
26760505 TGACTCAAAG
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
37 26 0.34
38 4 0.05
40 25 0.33
41 21 0.28
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGATAAATCGAAGATAAATTGA
Found at i:26760463 original size:37 final size:38
Alignment explanation
Indices: 26760368--26760464 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 38
26760358 ACACATCAGT
**
26760368 TTGGCACCCAGTGCCTCATCGGATAATTCGAAGAAATAAA
1 TTGGCACCCAGTGCCTCATCGGATAAACCGAAG--ATAAA
* * *
26760408 TTGACACCCAGTGACTCATCGGTTAAACCGAAG-TAAA
1 TTGGCACCCAGTGCCTCATCGGATAAACCGAAGATAAA
*
26760445 TTGGCACCTAGTGCCTCATC
1 TTGGCACCCAGTGCCTCATC
26760465 AAATAAATCT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
37 21 0.43
40 28 0.57
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (38 bp):
TTGGCACCCAGTGCCTCATCGGATAAACCGAAGATAAA
Found at i:26763475 original size:29 final size:29
Alignment explanation
Indices: 26763442--26763498 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
26763432 AAATAAAGAG
26763442 AGATATGGAGAATAAGAACAAAGAAAATT
1 AGATATGGAGAATAAGAACAAAGAAAATT
26763471 AGATATGGAGAATAAGAACAAAGAAAAT
1 AGATATGGAGAATAAGAACAAAGAAAAT
26763499 ATGAGAGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.60, C:0.04, G:0.21, T:0.16
Consensus pattern (29 bp):
AGATATGGAGAATAAGAACAAAGAAAATT
Found at i:26773759 original size:39 final size:39
Alignment explanation
Indices: 26773700--26773796 Score: 140
Period size: 39 Copynumber: 2.5 Consensus size: 39
26773690 ATCGTGATCT
* * * * *
26773700 GAAGCCTGAAGTCTAGCTGAAGCACATAAGTGTTAAACG
1 GAAGCCTGAAGGCTAACTGAAGCACACAAATGCTAAACG
26773739 GAAGCCTGAAGGCTAACTGAAGCACACAAATGCTAAACG
1 GAAGCCTGAAGGCTAACTGAAGCACACAAATGCTAAACG
*
26773778 GAAGCCCGAAGGCTAACTG
1 GAAGCCTGAAGGCTAACTG
26773797 TTAACTGAAG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (39 bp):
GAAGCCTGAAGGCTAACTGAAGCACACAAATGCTAAACG
Found at i:26773804 original size:46 final size:46
Alignment explanation
Indices: 26773752--26773840 Score: 151
Period size: 46 Copynumber: 1.9 Consensus size: 46
26773742 GCCTGAAGGC
*
26773752 TAACTGAAGCACACAAATGCTAAACGGAAGCCCGAAGGCTAACTGT
1 TAACTGAAGCACACAAATGCTAAACAGAAGCCCGAAGGCTAACTGT
* *
26773798 TAACTGAAGCACACAAGTGCTAAATAGAAGCCCGAAGGCTAAC
1 TAACTGAAGCACACAAATGCTAAACAGAAGCCCGAAGGCTAAC
26773841 AGAAGCACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.15
Consensus pattern (46 bp):
TAACTGAAGCACACAAATGCTAAACAGAAGCCCGAAGGCTAACTGT
Found at i:26780911 original size:18 final size:19
Alignment explanation
Indices: 26780888--26780923 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26780878 AATTTTAAAA
26780888 TAAATTTTAT-AATTTTTT
1 TAAATTTTATAAATTTTTT
*
26780906 TAAATTTTTTAAATTTTT
1 TAAATTTTATAAATTTTT
26780924 AAAAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TAAATTTTATAAATTTTTT
Found at i:26780929 original size:19 final size:19
Alignment explanation
Indices: 26780892--26780936 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
26780882 TTAAAATAAA
**
26780892 TTTTATAATTTTTTTAAATT
1 TTTTA-AATTTTTAAAAATT
26780912 TTTTAAATTTTTAAAAATT
1 TTTTAAATTTTTAAAAATT
*
26780931 ATTTAA
1 TTTTAA
26780937 TTGTTGATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAATTTTTAAAAATT
Found at i:26783233 original size:21 final size:21
Alignment explanation
Indices: 26783207--26783253 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26783197 TTGTCATTTT
26783207 TCACACGAACGTGTGCCTCAG
1 TCACACGAACGTGTGCCTCAG
** * *
26783228 TCACACGGGCGTGTGCTTTAG
1 TCACACGAACGTGTGCCTCAG
26783249 TCACA
1 TCACA
26783254 TAATCATGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (21 bp):
TCACACGAACGTGTGCCTCAG
Found at i:26783526 original size:119 final size:120
Alignment explanation
Indices: 26783356--26783601 Score: 390
Period size: 119 Copynumber: 2.1 Consensus size: 120
26783346 TGTGATTTAG
* *
26783356 CCACAC-GATCGTGTTTACTCTGCTTCCTAAATGTGTTAATTTTTTTATCACATGACACAGTGAG
1 CCACACAGATCGTGTTTACTCTACTTCCTAAATGTGTTAATTTTTTTATCACACGACACAGTGAG
* * * *
26783420 TTACACGGTTTGGTCACACA-ATAATATAATTTAGTCACACGGGCGTGTGTCTCAA
66 TTACACAGTTTGGTCACA-AGATAATATAATTTAGTCACACGAGCATATGTCTCAA
26783475 CCACACAG-TCGTGTTTACTCTACTTCCTAAATGTGTTAATTTTTTTATCACACGACACAGTGAG
1 CCACACAGATCGTGTTTACTCTACTTCCTAAATGTGTTAATTTTTTTATCACACGACACAGTGAG
* *
26783539 TTACACAGTTTGGTCACAAGATAATATAATTTAGTTACACGAGCATATGTCTCAG
66 TTACACAGTTTGGTCACAAGATAATATAATTTAGTCACACGAGCATATGTCTCAA
26783594 CCACACAG
1 CCACACAG
26783602 CCACGTGCCT
Statistics
Matches: 117, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
118 1 0.01
119 115 0.98
120 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (120 bp):
CCACACAGATCGTGTTTACTCTACTTCCTAAATGTGTTAATTTTTTTATCACACGACACAGTGAG
TTACACAGTTTGGTCACAAGATAATATAATTTAGTCACACGAGCATATGTCTCAA
Found at i:26784222 original size:37 final size:38
Alignment explanation
Indices: 26784177--26784266 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 38
26784167 CACAATTCTT
* *
26784177 GTGTGTAGGGTGGATGGACCAACCATAGTCCT-TTGTG
1 GTGTGTAGGGTGGATGGACCAACCATAGCCCTAATGTG
* * * * *
26784214 GTGTGTAGGGTAGATGGGCCTATCGTAGCCCTAATGTG
1 GTGTGTAGGGTGGATGGACCAACCATAGCCCTAATGTG
*
26784252 GTGTGTAAGGTGGAT
1 GTGTGTAGGGTGGAT
26784267 AAAGTGGTGT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
37 26 0.60
38 17 0.40
ACGTcount: A:0.19, C:0.13, G:0.38, T:0.30
Consensus pattern (38 bp):
GTGTGTAGGGTGGATGGACCAACCATAGCCCTAATGTG
Found at i:26790505 original size:82 final size:82
Alignment explanation
Indices: 26790411--26790573 Score: 193
Period size: 82 Copynumber: 2.0 Consensus size: 82
26790401 GGCAAGTTTT
* * * * * * * * *
26790411 CCATTGACTATCTTGTGGGACATTCGTTGGGACTATTTATACTAGAGGTCTGTTAG-GTATTATT
1 CCATGGACTATCTCGTGGGACATCCATAGGGACTATCTATACTAGAAGTCTATT-GTGTATTATC
26790475 AAAGTAAAGGGAAGTCTG
65 AAAGTAAAGGGAAGTCTG
* * *
26790493 CCATGGACTATCTCGTGGGACGTCCATAGGGACTATCTGTACTAGAATTCTATTGTGTATTATCA
1 CCATGGACTATCTCGTGGGACATCCATAGGGACTATCTATACTAGAAGTCTATTGTGTATTATCA
*
26790558 AAGTAATGGGAAGTCT
66 AAGTAAAGGGAAGTCT
26790574 ACTAGGGTTA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 1 0.01
82 66 0.99
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (82 bp):
CCATGGACTATCTCGTGGGACATCCATAGGGACTATCTATACTAGAAGTCTATTGTGTATTATCA
AAGTAAAGGGAAGTCTG
Found at i:26794737 original size:23 final size:23
Alignment explanation
Indices: 26794707--26794751 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
26794697 GCATACATTG
26794707 CTTACGTAGTTATCTTTTTCTTT
1 CTTACGTAGTTATCTTTTTCTTT
26794730 CTTACGTAGTTATCTTTTTCTT
1 CTTACGTAGTTATCTTTTTCTT
26794752 ACTTTACAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.18, G:0.09, T:0.60
Consensus pattern (23 bp):
CTTACGTAGTTATCTTTTTCTTT
Found at i:26800806 original size:17 final size:18
Alignment explanation
Indices: 26800784--26800817 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26800774 CACATTGAAG
26800784 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
26800801 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
26800818 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:26802922 original size:49 final size:47
Alignment explanation
Indices: 26802672--26802941 Score: 187
Period size: 47 Copynumber: 5.7 Consensus size: 47
26802662 GTTATGTGAG
* ** *
26802672 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGA-GATGAGT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGATGATGA-T
* * *
26802721 -GCCAGTATAAGACATGTCTGGGACATGTATCGGCCTCGATGATGAT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGAT
* * * *
26802767 AGCCAGTGTAAGACGTGTCTGGGACATGCATC-GGCT--AAGCA-CAGT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATG-ATGA-T
** * * ** *
26802812 -GCTGGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATACACAAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCG-AT-GATGAT
* * *
26802859 AGCTAGTGTTAGACCATGTCTGGGACATGGCATCAGCCTCGATGGTGAT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGATGATGAT
*
26802908 AGCCAGTGGAAGACCATGTCTGGGACATGGCATC
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
26802942 GGCAACTTAA
Statistics
Matches: 177, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
44 32 0.18
45 3 0.02
46 13 0.07
47 49 0.28
48 22 0.12
49 46 0.26
50 9 0.05
51 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGAT
Found at i:26804933 original size:19 final size:19
Alignment explanation
Indices: 26804909--26804953 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
26804899 TGGCCCACTA
* *
26804909 GGCCCAATCTCGTTCATAT
1 GGCCCAATCACCTTCATAT
26804928 GGCCCAAATCACCTTCATAT
1 GGCCC-AATCACCTTCATAT
*
26804948 GTCCCA
1 GGCCCA
26804954 TTTGGCCTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.24, C:0.36, G:0.13, T:0.27
Consensus pattern (19 bp):
GGCCCAATCACCTTCATAT
Found at i:26815538 original size:10 final size:10
Alignment explanation
Indices: 26815502--26815562 Score: 50
Period size: 11 Copynumber: 5.8 Consensus size: 10
26815492 ACAATCTCTC
*
26815502 CAAATTTTTT
1 CAAATTTTCT
26815512 CCAAATTTTCT
1 -CAAATTTTCT
26815523 CAAATTTCTCT
1 CAAATTT-TCT
* *
26815534 CAATTTTTGT
1 CAAATTTTCT
*
26815544 CAAAGTTGTCT
1 CAAA-TTTTCT
*
26815555 CTAATTTT
1 CAAATTTT
26815563 TGTAAAAAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
10 15 0.38
11 25 0.62
ACGTcount: A:0.26, C:0.18, G:0.05, T:0.51
Consensus pattern (10 bp):
CAAATTTTCT
Found at i:26815541 original size:21 final size:22
Alignment explanation
Indices: 26815517--26815563 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
26815507 TTTTTCCAAA
26815517 TTTTCTCAAA-TT-TCTCTCAAT
1 TTTTCTCAAAGTTGTCTCT-AAT
*
26815538 TTTTGTCAAAGTTGTCTCTAAT
1 TTTTCTCAAAGTTGTCTCTAAT
26815560 TTTT
1 TTTT
26815564 GTAAAAAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 9 0.39
23 5 0.22
ACGTcount: A:0.21, C:0.17, G:0.06, T:0.55
Consensus pattern (22 bp):
TTTTCTCAAAGTTGTCTCTAAT
Found at i:26815563 original size:22 final size:21
Alignment explanation
Indices: 26815517--26815565 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
26815507 TTTTTCCAAA
*
26815517 TTTTCTCAAATTTCTCTCAAT
1 TTTTGTCAAATTTCTCTCAAT
26815538 TTTTGTCAAAGTTGTCTCT-AAT
1 TTTTGTCAAA-TT-TCTCTCAAT
26815560 TTTTGT
1 TTTTGT
26815566 AAAAAAGCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 9 0.36
22 11 0.44
23 5 0.20
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.55
Consensus pattern (21 bp):
TTTTGTCAAATTTCTCTCAAT
Found at i:26817394 original size:18 final size:18
Alignment explanation
Indices: 26817358--26817400 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
26817348 TGCGAGGTAC
*
26817358 GTATCCTAGCCATTATAT
1 GTATCCTAACCATTATAT
* *
26817376 GTATCCTAACCTTTTTAT
1 GTATCCTAACCATTATAT
*
26817394 GTTTCCT
1 GTATCCT
26817401 TTTCCTAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCATTATAT
Found at i:26817943 original size:9 final size:9
Alignment explanation
Indices: 26817929--26817959 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26817919 TGACTACGGC
26817929 AATATTTTT
1 AATATTTTT
26817938 AATATTTTT
1 AATATTTTT
*
26817947 TATATTTTT
1 AATATTTTT
26817956 AATA
1 AATA
26817960 AAATATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
AATATTTTT
Found at i:26821257 original size:115 final size:115
Alignment explanation
Indices: 26821055--26821658 Score: 667
Period size: 126 Copynumber: 5.0 Consensus size: 115
26821045 TAATTTTACT
*
26821055 GACAGTGCATCCTTCTTGAAGCGTTTTTAACACTATTTGTTCAGAAACATCTTCTCAAAATTATT
1 GACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATT
*
26821120 TTATCAAATACTTA-TGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCC
66 TTATCAGATAC-TACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCC
*
26821170 GACAGTGCATCCTTCTTGATA-CGTTTTTGACACTATTTGTTCAGAAACATTTTCTCAAAATTAT
1 GACAGTGCATCCTTCTTGA-AGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
* * * * *
26821234 TTTATCATATACTACTGTAGCAAAAGAACGTCCACATGAGAGTTTTTTTCCGTAATTTTGC
65 TTTATCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTT-C---------C
*
26821295 TGACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTAT
1 -GACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
* *
26821360 TTTATCAGAT-CTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTCTGTAATTTTGCT
65 TTTATCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAG-----CT-T--TTTT-CC
*
26821419 GATAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATT
1 GACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATT
* * * * *
26821484 TTATCAGATATTACTATAGTAAAAGAGTGTCCACATGGGAG-TGTTTTTCC
66 TTATCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCT-TTTTTCC
*
26821534 GTAATTTTGCTGATAGTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTC
1 G--A-----C----AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTC
* * * * *
26821599 TCAAATTTATTTTTTCAGATACTACTATAGCAAAAGAACGTCCACGTGAGAGCTTTTTTC
55 TCAAAATTATTTTATCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTC
26821659 GGTAATTAAT
Statistics
Matches: 418, Mismatches: 36, Indels: 59
0.81 0.07 0.12
Matches are distributed among these distances:
114 2 0.00
115 103 0.25
116 6 0.01
117 1 0.00
118 3 0.01
123 72 0.17
124 25 0.06
125 29 0.07
126 169 0.40
127 1 0.00
130 1 0.00
131 1 0.00
133 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (115 bp):
GACAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATT
TTATCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCC
Found at i:26821533 original size:249 final size:245
Alignment explanation
Indices: 26820993--26821655 Score: 959
Period size: 249 Copynumber: 2.7 Consensus size: 245
26820983 AGTCTAAGGC
* * *
26820993 TTTT-TCAAATACTACTGTAGCAAAAGAACGTCCACATGGGAGCTTTTTTCCGTAATTTTACTGA
1 TTTTATCAGATACTACTATAGCAAAAGAACGTCCACATGGGAG-TTTTTTCCGTAATTTTGCTGA
*
26821057 CAGTGCATCCTTCTTGAAGCGTTTTTAACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTT
65 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTT
* *
26821122 ATCAAATACTTA-TGTAGCAAAAGAGCGTCCACGTGGGAG-----CTTTTTTCCGACAGTGCATC
130 ATCAGATAC-TACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTCTTTTTTCCGACAGTGCATC
*
26821181 CTTCTTGATACGTTTTTGACACTATTTGTTCAGAAACATTTTCTCAAAATTA
194 CTTCTTGATACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* * *
26821233 TTTTATCATATACTACTGTAGCAAAAGAACGTCCACATGAGAGTTTTTTTCCGTAATTTTGCTGA
1 TTTTATCAGATACTACTATAGCAAAAGAACGTCCACATGGGAG-TTTTTTCCGTAATTTTGCTGA
*
26821298 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTT
65 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTT
* *
26821363 ATCAGAT-CTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTCTGTAATTTTGCTGATAGTGC
130 ATCAGATACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTCT-T--TTTT-CCGACAGTGC
26821427 ATCCTTCTTGA-AGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
191 ATCCTTCTTGATA-CGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
* * **
26821482 TTTTATCAGATATTACTATAGTAAAAGAGTGTCCACATGGGAGTGTTTTTCCGTAATTTTGCTGA
1 TTTTATCAGATACTACTATAGCAAAAGAACGTCCACATGGGAGT-TTTTTCCGTAATTTTGCTGA
* * *
26821547 TAGTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTTATTTT
65 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTT
* * *
26821612 TTCAGATACTACTATAGCAAAAGAA-CGTCCACGTGAGAGCTTTT
130 ATCAGATACTACTGTAGCAAAA-AAGCGTCCACGTGGGAGCTTTT
26821656 TTCGGTAATT
Statistics
Matches: 383, Mismatches: 25, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
239 2 0.01
240 31 0.08
241 125 0.33
245 2 0.01
246 1 0.00
248 6 0.02
249 183 0.48
250 31 0.08
251 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (245 bp):
TTTTATCAGATACTACTATAGCAAAAGAACGTCCACATGGGAGTTTTTTCCGTAATTTTGCTGAC
AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTA
TCAGATACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTCTTTTTTCCGACAGTGCATCCT
TCTTGATACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA
Found at i:26821584 original size:126 final size:126
Alignment explanation
Indices: 26821173--26821665 Score: 726
Period size: 126 Copynumber: 3.9 Consensus size: 126
26821163 TTTTTCCGAC
*
26821173 AGTGCATCCTTCTTGATA-CGTTTTTGACACTATTTGTTCAGAAACATTTTCTCAAAATTATTTT
1 AGTGCATCCTTCTTGA-AGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTT
* * * * * *
26821237 ATCATATACTACTGTAGCAAAAGAACGTCCACATGAGAGTTTTTTTCCGTAATTTTGCTGAC
65 ATCAGATACTACTATAGCAAAAGAGCGTCCACATGGGAGTGTTTTTCCGTAATTTTGCTGAT
*
26821299 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTA
1 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTA
* * * * *
26821364 TCAGAT-CTACTGTAGCAAAAAAGCGTCCACGTGGGA--GCTTTTCTGTAATTTTGCTGAT
66 TCAGATACTACTATAGCAAAAGAGCGTCCACATGGGAGTGTTTTTCCGTAATTTTGCTGAT
26821422 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTA
1 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTA
* * *
26821487 TCAGATATTACTATAGTAAAAGAGTGTCCACATGGGAGTGTTTTTCCGTAATTTTGCTGAT
66 TCAGATACTACTATAGCAAAAGAGCGTCCACATGGGAGTGTTTTTCCGTAATTTTGCTGAT
* * *
26821548 AGTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTTATTTTT
1 AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTA
* * * *
26821613 TCAGATACTACTATAGCAAAAGAACGTCCACGTGAGAGCT-TTTTTCGGTAATT
66 TCAGATACTACTATAGCAAAAGAGCGTCCACATGGGAG-TGTTTTTCCGTAATT
26821666 AATACTTAAT
Statistics
Matches: 332, Mismatches: 30, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
123 88 0.27
124 24 0.07
125 27 0.08
126 192 0.58
127 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (126 bp):
AGTGCATCCTTCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTA
TCAGATACTACTATAGCAAAAGAGCGTCCACATGGGAGTGTTTTTCCGTAATTTTGCTGAT
Found at i:26821872 original size:158 final size:158
Alignment explanation
Indices: 26821693--26822664 Score: 1421
Period size: 158 Copynumber: 6.1 Consensus size: 158
26821683 ATAAACCCTA
** *
26821693 AAAAAACCCTAAACCCTAATTTAATTGATTTTTAAAATTTCATAGTTAATTTAATTAATTAACCC
1 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
*
26821758 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATACTAAAACCCTAAACCACTAAAACCCTAA
66 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
* *
26821823 TCCTAAAACAATTAAAAATCCTAACCTT
131 TCCTAAAACAATCAAAAACCCTAACCTT
*
26821851 AAAAAACCCTAAATCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
1 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
* * * *
26821916 TCAACTCTAATTAAATTAATTTTTTCCTT-AAAAATATTAAAACCCTAAACCACTAAAACTCTAA
66 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
* *
26821980 TCCTAAAACAATCAAAAACCTTAACCCT
131 TCCTAAAACAATCAAAAACCCTAACCTT
* * *
26822008 AAAAAACCATAAACCTTAATTTAATTAATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
1 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
* *
26822073 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACAAAAACCCTAAGCCACTAAAACCCTAA
66 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
* **
26822138 TCATAAAACAATCAAAAATTCTAACCTT
131 TCCTAAAACAATCAAAAACCCTAACCTT
26822166 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
1 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
* * * * *
26822231 TCAACTCTAATTAGATTAATTTTTCCCTTAAAAAACCCTGAAATCCTAAACTACTAAAACCCTAA
66 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
* *
26822296 TCCTAAAGCAATCAAAAACCCTAGCCTT
131 TCCTAAAACAATCAAAAACCCTAACCTT
* **
26822324 AAAAAACCCGAAACTATAATTTAATTGATTTTTTTTTATTTTCATAGTTAATTTAATTAATTAAC
1 AAAAAACCCTAAACCCTAATTTAATTGA--TTTTTTTATTTTCATAGTTAATTTAATTAATTAAC
* * *
26822389 CCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACTCTAAATCACTAAAATCCT
64 CCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCT
* * **
26822454 AAACCCTAAAATGATAAAAAAAAAACCC-AA-CTCT
129 -AATCCT-AAA--A-CAATCAAAAACCCTAACCT-T
*
26822488 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTTATTTTCATAGTTAATTTAATTAATTAATC
1 AAAAAACCCTAAACCCTAATTTAATTGA-TTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
* * *
26822553 CTCAACTCTAATTAAATTAATTTTACCTTTAAAAAACCCTAAAACCCTAAACCACTAAAACCCTA
65 CTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTA
* *
26822618 ATCTTAAAACAATCAAAAACCCTAACCCT
130 ATCCTAAAACAATCAAAAACCCTAACCTT
**
26822647 -AAAAACTTTAAACCCTAA
1 AAAAAACCCTAAACCCTAA
26822665 AAAATAAGGC
Statistics
Matches: 727, Mismatches: 76, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
157 146 0.20
158 336 0.46
159 4 0.01
160 93 0.13
161 8 0.01
162 7 0.01
163 96 0.13
164 27 0.04
165 10 0.01
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (158 bp):
AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
TCCTAAAACAATCAAAAACCCTAACCTT
Found at i:26822024 original size:23 final size:23
Alignment explanation
Indices: 26821962--26822026 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
26821952 TTAAAACCCT
* *
26821962 AAACCACTAAAACTCTAATCCTAAA
1 AAACCA-TAAACCT-TAACCCTAAA
* *
26821987 ACAATCAAAAACCTTAACCCTAAA
1 A-AACCATAAACCTTAACCCTAAA
26822011 AAACCATAAACCTTAA
1 AAACCATAAACCTTAA
26822027 TTTAATTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 13 0.39
24 10 0.30
25 6 0.18
26 4 0.12
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.18
Consensus pattern (23 bp):
AAACCATAAACCTTAACCCTAAA
Found at i:26822313 original size:24 final size:22
Alignment explanation
Indices: 26822261--26822318 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
26822251 TTTTCCCTTA
*
26822261 AAAAACCCTGAAATCCTAAACTAC
1 AAAAACCCT--AATCCTAAACAAC
*
26822285 TAAAACCCTAATCCTAAAGCAATC
1 AAAAACCCTAATCCTAAA-CAA-C
26822309 AAAAACCCTA
1 AAAAACCCTA
26822319 GCCTTAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 9 0.31
23 2 0.07
24 18 0.62
ACGTcount: A:0.50, C:0.29, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAAACCCTAATCCTAAACAAC
Found at i:26822455 original size:16 final size:16
Alignment explanation
Indices: 26822423--26822465 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
26822413 TTCCCTTAAA
26822423 AAACACTAAAA-CTCT
1 AAACACTAAAATCTCT
26822438 AAATCACTAAAATC-CT
1 AAA-CACTAAAATCTCT
*
26822454 AAACCCTAAAAT
1 AAACACTAAAAT
26822466 GATAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 11 0.44
16 13 0.52
17 1 0.04
ACGTcount: A:0.53, C:0.26, G:0.00, T:0.21
Consensus pattern (16 bp):
AAACACTAAAATCTCT
Found at i:26822497 original size:315 final size:309
Alignment explanation
Indices: 26821686--26822651 Score: 1247
Period size: 315 Copynumber: 3.0 Consensus size: 309
26821676 TTAATTAATA
* ** *
26821686 AACCCTAAAAAAACCCTAAACCCTAATTTAATTGATTTTTAAAATTTCATAGTTAATTTAATTAA
1 AACCCT-AAAAAACCCTAAA-CTTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAA
*
26821751 TTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATACTAAAACCCTAAACCACTAAA
64 TTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAA
* ** * *
26821816 ACCCTAATCCT-AAAACAATTAAAAATCCTAACCTTAAAAAACCCTAAATCCTAATTTAATTGAT
129 ACCCTAATCCTAAAAATAAAAAAAAAACCTAACC-T---AAA--C-AAACCCTAATTTAATTGAT
*
26821880 TTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTTCCTT
187 TTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTT
* * *
26821945 AAAAATA--TTAAAACCCTAAACCACTAAAACTCTAATCCTAAAACAATCAAAAACCTT
252 AAAAA-ACCCTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCT
* *
26822002 AACCCTAAAAAACCATAAACCTTAATTTAATTAATTTTTTTATTTTCATAGTTAATTTAATTAAT
1 AACCCTAAAAAACCCTAAA-CTTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAAT
* *
26822067 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACAAAAACCCTAAGCCACTAAAA
65 TAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAA
* * ** **
26822132 CCCTAATCAT-AAAACAATCAAAAATTCTAACCTTAAAAAACCCTAAACCCTAATTTAATTGATT
130 CCCTAATCCTAAAAATAAAAAAAAAACCTAACC-T---AAA--C-AAACCCTAATTTAATTGATT
*
26822196 TTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAGATTAATTTTTCCCTTA
188 TTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTA
* * * *
26822261 AAAAACCCTGAAATCCTAAACTACTAAAACCCTAATCCTAAAGCAATCAAAAACCCT
253 AAAAACCCTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCT
* * *
26822318 AGCCTTAAAAAACCCGAAACTATAATTTAATTGATTTTTTTTTATTTTCATAGTTAATTTAATTA
1 AACCCTAAAAAACCCTAAACT-TAATTTAATTGA--TTTTTTTATTTTCATAGTTAATTTAATTA
* *
26822383 ATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACTCTAAATCACTAA
63 ATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAA
* * *
26822448 AATCCTAAACCCTAAAATGATAAAAAAAAAACCCAACTCTAAAAAACCCTAAACCCTAATTTAAT
128 AACCCT-AATCCTAAAA--ATAAAAAAAAAACCTAAC-CT---AAA--C-AAACCCTAATTTAAT
* *
26822513 TGATTTTTTTTATTTTCATAGTTAATTTAATTAATTAATCCTCAACTCTAATTAAATTAATTTTA
183 TGA-TTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTT
* *
26822578 CCTTTAAAAAACCCTAAAACCCTAAACCACTAAAACCCTAATCTTAAAACAATCAAAAACCCT
247 CCCTTAAAAAACCCTAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCT
26822641 AACCCTAAAAA
1 AACCCTAAAAA
26822652 CTTTAAACCC
Statistics
Matches: 588, Mismatches: 51, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
314 1 0.00
315 244 0.41
316 75 0.13
318 95 0.16
319 4 0.01
320 3 0.01
322 41 0.07
323 125 0.21
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (309 bp):
AACCCTAAAAAACCCTAAACTTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATT
AACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAAC
CCTAATCCTAAAAATAAAAAAAAAACCTAACCTAAACAAACCCTAATTTAATTGATTTTTTTATT
TTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACCC
TAAAACCCTAAACCACTAAAACCCTAATCCTAAAACAATCAAAAACCCT
Found at i:26822590 original size:473 final size:468
Alignment explanation
Indices: 26821693--26822664 Score: 1351
Period size: 473 Copynumber: 2.0 Consensus size: 468
26821683 ATAAACCCTA
26821693 AAAAAACCCTAAACCCTAATTTAATTGATTTTTAAAATTTCATAGTTAATTTAATTAATTAACCC
1 AAAAAACCCTAAACCCTAATTTAATTGATTTTTAAAATTTCATAGTTAATTTAATTAATTAACCC
*
26821758 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAATACTAAAACCCTAAACCACTAAAACCCTAA
66 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
* * * *
26821823 TCCTAAAACAATTAAAAATCCTAACCTTAAAAAACCCTAAATCCTAATTTAATTGATTTTTTTAT
131 TCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCGAAATCATAATTTAATTGATTTTTTTAT
* * *
26821888 TTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTTCCTTAAAAATAT
196 TTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAACAC
* * ** *
26821953 TAAAACCCTAAACCACTAAAACTCTAATCCTAAAACAATCAAAAACCTTAACCCTAAAAAACCAT
261 TAAAACCCTAAACCACTAAAACTCTAACCCTAAAAAAAAAAAAAACCTCAACCCTAAAAAACCAT
*
26822018 AAACCTTAATTTAATTAATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAA
326 AAACCCTAATTTAATTAATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAA
*
26822083 TTAAATTAATTTTTCCCTTAAAAAACACAAAAACCCTAAGCCACTAAAACCCTAATCATAAAACA
391 TTAAATTAATTTTTACCTT-----ACACAAAAACCCTAAGCCACTAAAACCCTAATCATAAAACA
26822148 ATCAAAAATTCTAACCTT
451 ATCAAAAATTCTAACCTT
** *
26822166 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCC
1 AAAAAACCCTAAACCCTAATTTAATTGATTTTTAAAATTTCATAGTTAATTTAATTAATTAACCC
* * * * *
26822231 TCAACTCTAATTAGATTAATTTTTCCCTTAAAAAACCCTGAAATCCTAAACTACTAAAACCCTAA
66 TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
* *
26822296 TCCTAAAGCAATCAAAAACCCTAGCCTTAAAAAACCCGAAA-CTATAATTTAATTGATTTTTTTT
131 TCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCGAAATC-ATAATTTAATTGA--TTTTTT
26822360 TATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAA
193 TATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTT-AAAA
* * *
26822425 ACACTAAAACTCTAAATCACTAAAA-TCCTAAACCCTAAAATGATAAAAAAAAAACC-CAACTCT
257 ACACTAAAACCCTAAACCACTAAAACT-CT-AACCCT-AAA--A-AAAAAAAAAACCTCAACCCT
* * *
26822488 AAAAAACCCTAAACCCTAATTTAATTGATTTTTTTTATTTTCATAGTTAATTTAATTAATTAATC
316 AAAAAACCATAAACCCTAATTTAATT-AATTTTTTTATTTTCATAGTTAATTTAATTAATTAACC
* * *
26822553 CTCAACTCTAATTAAATTAA-TTTTACCTTTAAAAAACCCTAAAACCCTAAACCACTAAAACCCT
380 CTCAACTCTAATTAAATTAATTTTTACC-TT-----ACACAAAAACCCTAAGCCACTAAAACCCT
* ** *
26822617 AATCTTAAAACAATCAAAAACCCTAACCCT
439 AATCATAAAACAATCAAAAATTCTAACCTT
**
26822647 -AAAAACTTTAAACCCTAA
1 AAAAAACCCTAAACCCTAA
26822665 AAAATAAGGC
Statistics
Matches: 447, Mismatches: 40, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
472 1 0.00
473 169 0.38
475 66 0.15
476 27 0.06
477 5 0.01
478 3 0.01
480 52 0.12
481 124 0.28
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (468 bp):
AAAAAACCCTAAACCCTAATTTAATTGATTTTTAAAATTTCATAGTTAATTTAATTAATTAACCC
TCAACTCTAATTAAATTAATTTTTCCCTTAAAAAACACTAAAACCCTAAACCACTAAAACCCTAA
TCCTAAAACAATCAAAAACCCTAACCTTAAAAAACCCGAAATCATAATTTAATTGATTTTTTTAT
TTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAATTAAATTAATTTTTCCCTTAAAAACAC
TAAAACCCTAAACCACTAAAACTCTAACCCTAAAAAAAAAAAAAACCTCAACCCTAAAAAACCAT
AAACCCTAATTTAATTAATTTTTTTATTTTCATAGTTAATTTAATTAATTAACCCTCAACTCTAA
TTAAATTAATTTTTACCTTACACAAAAACCCTAAGCCACTAAAACCCTAATCATAAAACAATCAA
AAATTCTAACCTT
Found at i:26822598 original size:8 final size:8
Alignment explanation
Indices: 26822585--26822618 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
26822575 TTACCTTTAA
26822585 AAAACCCT
1 AAAACCCT
26822593 AAAACCCT
1 AAAACCCT
26822601 -AAACCACT
1 AAAACC-CT
26822609 AAAACCCT
1 AAAACCCT
26822617 AA
1 AA
26822619 TCTTAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 5 0.21
8 14 0.58
9 5 0.21
ACGTcount: A:0.53, C:0.35, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAACCCT
Found at i:26833210 original size:41 final size:41
Alignment explanation
Indices: 26833153--26833236 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26833143 TTACTATCTT
26833153 CAGCTAAATTTACCTCGTCTTATCTCTAATTGATATACAAA
1 CAGCTAAATTTACCTCGTCTTATCTCTAATTGATATACAAA
26833194 CAGCTAAATTTACCTCGTCTTATCTCTAATTGATATACAAA
1 CAGCTAAATTTACCTCGTCTTATCTCTAATTGATATACAAA
26833235 CA
1 CA
26833237 AACAAATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.36
Consensus pattern (41 bp):
CAGCTAAATTTACCTCGTCTTATCTCTAATTGATATACAAA
Found at i:26833569 original size:3 final size:3
Alignment explanation
Indices: 26833561--26833622 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
26833551 CCCTAAGCAA
26833561 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26833609 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
26833623 AGCTTAAATG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26834591 original size:15 final size:14
Alignment explanation
Indices: 26834560--26834593 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
26834550 CGATTTGATG
*
26834560 TTAAATTAATTAAA
1 TTAAATTAATCAAA
26834574 TTAAATTATATCAAA
1 TTAAATTA-ATCAAA
26834589 TTAAA
1 TTAAA
26834594 ATTTAGGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
TTAAATTAATCAAA
Found at i:26834818 original size:26 final size:26
Alignment explanation
Indices: 26834775--26834847 Score: 110
Period size: 26 Copynumber: 2.7 Consensus size: 26
26834765 TTACAATTAG
*
26834775 TATTGTTTTTTGGAATAAATCAACTAA
1 TATTG-TTTTTGGGATAAATCAACTAA
26834802 TATTGTTTTTGGGATAAATCAACTAA
1 TATTGTTTTTGGGATAAATCAACTAA
*
26834828 TATTTGTTTTGGGGATAAAT
1 TA-TTGTTTTTGGGATAAAT
26834848 TAACATTTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 22 0.51
27 21 0.49
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.45
Consensus pattern (26 bp):
TATTGTTTTTGGGATAAATCAACTAA
Found at i:26836839 original size:19 final size:19
Alignment explanation
Indices: 26836803--26836849 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
26836793 AAAAATTATT
*
26836803 TTTTAAAAGAATTATAAAG
1 TTTTAAAAGAATTATAAAA
*
26836822 TTTTAAAA-CATTATTAAAA
1 TTTTAAAAGAATTA-TAAAA
26836841 TTTATAAAA
1 TTT-TAAAA
26836850 ATATTTACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.17
19 15 0.62
20 5 0.21
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (19 bp):
TTTTAAAAGAATTATAAAA
Found at i:26845591 original size:29 final size:31
Alignment explanation
Indices: 26845559--26845618 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 31
26845549 ATACAATTTA
26845559 AATTTAGTCTCTT-TA-TTTTT-ATTTTAAAG
1 AATTTAGT-TCTTATACTTTTTAATTTTAAAG
26845588 AATTTAGTTCTTATACTTTTTAGATTTTAAA
1 AATTTAGTTCTTATACTTTTTA-ATTTTAAA
26845619 ATTCAAGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 4 0.15
29 10 0.37
30 5 0.19
32 8 0.30
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (31 bp):
AATTTAGTTCTTATACTTTTTAATTTTAAAG
Found at i:26847200 original size:43 final size:45
Alignment explanation
Indices: 26847152--26847249 Score: 139
Period size: 43 Copynumber: 2.2 Consensus size: 45
26847142 TTCCTAAAAG
* *
26847152 ATAATATCCCATTAGGAATCAAATTGCTAAGA-GATAATAT-CAT-
1 ATAATATCCCATTAGGAATCAAACTACTAA-ACGATAATATACATA
26847195 ATAATATCCCATTAGGAATCAAACTACTAAACGATAATATACCATA
1 ATAATATCCCATTAGGAATCAAACTACTAAACGATAATATA-CATA
26847241 ATAATATCC
1 ATAATATCC
26847250 TAACACCCCC
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
42 1 0.02
43 36 0.73
45 3 0.06
46 9 0.18
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (45 bp):
ATAATATCCCATTAGGAATCAAACTACTAAACGATAATATACATA
Found at i:26852029 original size:49 final size:50
Alignment explanation
Indices: 26851923--26852056 Score: 120
Period size: 48 Copynumber: 2.7 Consensus size: 50
26851913 GGGTTAAGAT
* * *
26851923 GCTGACGCCATGTCCTAGACATGGTCTTACACTAGCTCTTATCTATCGGTG
1 GCTGATGCCATGTCCTAGACATGGTATTACACTAGCTCTTA-CTATCGGAG
* *
26851974 TC-GATGCCATGTCCTAGACA-GTTATTACACTAGCT-TGTA-TATCGTGAG
1 GCTGATGCCATGTCCTAGACATGGTATTACACTAGCTCT-TACTATCG-GAG
* *
26852022 GCTGATG-CATGT-CTCAGACAT-GTCTTATACTAGCT
1 GCTGATGCCATGTCCT-AGACATGGTATTACACTAGCT
26852057 TTCGTCTCTA
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
47 7 0.10
48 25 0.36
49 19 0.28
50 17 0.25
51 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (50 bp):
GCTGATGCCATGTCCTAGACATGGTATTACACTAGCTCTTACTATCGGAG
Found at i:26852054 original size:48 final size:47
Alignment explanation
Indices: 26851931--26852190 Score: 167
Period size: 46 Copynumber: 5.5 Consensus size: 47
26851921 ATGCTGACGC
* * *
26851931 CATGTCCTAGACATGGTCTTACACTAGCTCTTATCTATCG-G-TGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCT-TTA--TATCGTGAGGCCGATG
* * *
26851980 CCATGTCCTAGACA-GTTATTACACTAGCTTGTATATCGTGAGGCTGATG
1 -CATGTCCCAGACATG-TCTTACACTAGCTT-TATATCGTGAGGCCGATG
* * * * **
26852029 CATGTCTCAGACATGTCTTATACTAGCTTTCGTCTC-T-ATACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTT-ATATCGTGAGGCCGATG
* * * *
26852075 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTTGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCGTGAGGCCGATG
* * * * * *
26852123 TATGTCTCAGACATGTCTTACACTGGCTCT-CAT-GCTGTA-GCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATATCG-TG-AGGCCGATG
26852169 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
26852191 TTAGTACACA
Statistics
Matches: 167, Mismatches: 32, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
46 64 0.38
47 9 0.05
48 61 0.37
49 20 0.12
50 13 0.08
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCGTGAGGCCGATG
Found at i:26852097 original size:94 final size:94
Alignment explanation
Indices: 26851975--26852190 Score: 247
Period size: 94 Copynumber: 2.3 Consensus size: 94
26851965 CTATCGGTGT
* * ** **
26851975 CGATGCCATGTCCTAGACA-GTTATTACACTAGCTTGTATATCGTGAGGCTGATGCATGTCTCAG
1 CGATG-CATGTCCCAGACATG-TCTTACACTAGCTTAAATATCGTGAGGCCAATGCATGTCTCAG
* * *
26852039 ACATGTCTTATACTAGCTTTCGT-CTCTATAC
64 ACATGTCTTACACTAGCTCTCATGCTCTA-AC
* * *
26852070 CGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTTGAGGCCAATGTATGTCTCAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGTGAGGCCAATGCATGTCTCAGAC
* * *
26852135 ATGTCTTACACTGGCTCTCATGCTGTAGC
66 ATGTCTTACACTAGCTCTCATGCTCTAAC
*
26852164 TGATGCATGTCCCAGACATGTCTTACA
1 CGATGCATGTCCCAGACATGTCTTACA
26852191 TTAGTACACA
Statistics
Matches: 103, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
94 93 0.90
95 10 0.10
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGTGAGGCCAATGCATGTCTCAGAC
ATGTCTTACACTAGCTCTCATGCTCTAAC
Found at i:26858993 original size:23 final size:23
Alignment explanation
Indices: 26858945--26858993 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
26858935 GATTTTATAA
* *
26858945 TTTTTTGAGATTTTTCTTCTTCT
1 TTTTTTGAAATTTTTCTTATTCT
*
26858968 TTTTTTGACAATTTTTTTTATT-T
1 TTTTTTGA-AATTTTTCTTATTCT
26858991 TTT
1 TTT
26858994 CTCTTTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.73
Consensus pattern (23 bp):
TTTTTTGAAATTTTTCTTATTCT
Found at i:26859075 original size:21 final size:19
Alignment explanation
Indices: 26859028--26859077 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
26859018 TAAACAAAAA
*
26859028 ATATATTTTTTAAATTTCT
1 ATATATTTTTTAAATTTCC
* *
26859047 ATAAATTTTATATAACTTTCC
1 ATATATTTT-T-TAAATTTCC
26859068 ATATATTTTT
1 ATATATTTTT
26859078 CTGATTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 8 0.32
20 2 0.08
21 15 0.60
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (19 bp):
ATATATTTTTTAAATTTCC
Found at i:26859378 original size:6 final size:6
Alignment explanation
Indices: 26859367--26859396 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
26859357 ATTAGTGAAC
*
26859367 AAATAT AAATAT AAATAT AAGTAT AAATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT
26859397 TTATAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (6 bp):
AAATAT
Found at i:26860050 original size:2 final size:2
Alignment explanation
Indices: 26860043--26860086 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
26860033 GTGGGTTCTC
26860043 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26860085 AT
1 AT
26860087 CACACTTGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26874124 original size:41 final size:41
Alignment explanation
Indices: 26874076--26874184 Score: 155
Period size: 41 Copynumber: 2.7 Consensus size: 41
26874066 ATAGGGTGTT
*
26874076 ATTCAGGCTTTGTGCATAGTAGGCTTAGTGTCGGTGTATTG
1 ATTCAGGCTTTGTGCATAGCAGGCTTAGTGTCGGTGTATTG
** *
26874117 ATTCAGGCTTCATGCCTAGCAGGCTTAGTGTCGGTGTATTG
1 ATTCAGGCTTTGTGCATAGCAGGCTTAGTGTCGGTGTATTG
* * *
26874158 ATTCAGACTTTGTGCCTAGCTGGCTTA
1 ATTCAGGCTTTGTGCATAGCAGGCTTA
26874185 ATGCCGATGT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.37
Consensus pattern (41 bp):
ATTCAGGCTTTGTGCATAGCAGGCTTAGTGTCGGTGTATTG
Found at i:26874222 original size:38 final size:38
Alignment explanation
Indices: 26874171--26874259 Score: 92
Period size: 38 Copynumber: 2.3 Consensus size: 38
26874161 CAGACTTTGT
* * * *
26874171 GCCTAGCT-GGCTTAATGCC-GATGTTATTTAGGCTTAAT
1 GCCTAG-TAGGCTTAATGCCAG-TGTTACTCAAGCTTAAA
* *
26874209 GTCTAGTAGGCTTAGTGCCAGTGTTACTCAAGCTTAAA
1 GCCTAGTAGGCTTAATGCCAGTGTTACTCAAGCTTAAA
26874247 GCCTAGTAGGCTT
1 GCCTAGTAGGCTT
26874260 GATACCGGTG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
37 1 0.02
38 40 0.95
39 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (38 bp):
GCCTAGTAGGCTTAATGCCAGTGTTACTCAAGCTTAAA
Found at i:26876275 original size:47 final size:46
Alignment explanation
Indices: 26876165--26876430 Score: 212
Period size: 47 Copynumber: 5.7 Consensus size: 46
26876155 TTGTTTGTGG
*
26876165 GCTACTGTAAGA-CATGTCTGGGACATGCATCGGCCACATT-ATGAGAG-
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGG---CATTGA-GAGAGA
* *
26876212 CCT-GTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGA-GAGA
* *
26876259 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTTGAGACGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGA-G-AGA
* * * *
26876305 GCTAGTGTAAGA-TATGTCTGGGACATGCATCGG-GTACGAGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCAT-TGAGA-GAGA
* *
26876351 G-TCAGTGTAAGACCATGTCTGGGACATAGCATCGAC-TTGAGATATGA
1 GCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGAGA-GA
*
26876398 GAC-AGGGTAAGACCATGTCTGGGACATGGCATC
1 G-CTAGTGTAAGACCATGTCTGGGACAT-GCATC
26876431 AGTACCTTAC
Statistics
Matches: 184, Mismatches: 19, Indels: 32
0.78 0.08 0.14
Matches are distributed among these distances:
45 9 0.05
46 74 0.40
47 80 0.43
48 21 0.11
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGAGAGA
Found at i:26876308 original size:46 final size:48
Alignment explanation
Indices: 26876218--26876430 Score: 212
Period size: 46 Copynumber: 4.5 Consensus size: 48
26876208 AGAGCCTGTA
* *
26876218 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCTTGAGACGAGAGCTAGTG
26876266 TAAGA-CATGTCTGGGACAT-GCATCGACCTTGAGACGTA-AGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCTTGAGACG-AGAGCTAGTG
* ** * * *
26876312 TAAGA-TATGTCTGGGACAT-GCATCG-GGTACGAGATGATAG-TCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCT-TGAGACGAGAGCT-AGTG
* * *
26876358 TAAGACCATGTCTGGGACATAGCATCGA-CTTGAGA-TATGAGAC-AGGG
1 TAAGACCATGTCTGGGACATGGCATCGACCTTGAGACGA-GAG-CTAGTG
26876405 TAAGACCATGTCTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
26876431 AGTACCTTAC
Statistics
Matches: 141, Mismatches: 14, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
45 3 0.02
46 64 0.45
47 62 0.44
48 12 0.09
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACCTTGAGACGAGAGCTAGTG
Found at i:26876422 original size:140 final size:141
Alignment explanation
Indices: 26876165--26876430 Score: 344
Period size: 140 Copynumber: 1.9 Consensus size: 141
26876155 TTGTTTGTGG
* *
26876165 GCTACTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCTGTATAAGACCATGTC
1 GCTACTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTATAAGACCATGTC
* * *
26876230 TGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACC
66 TGGGACATAGCATCGACATTGAGACGAGAGCTAGGGTAAGACATGTCTGGGACATGGCATCGACC
26876294 TTGAGACGTAA
131 TTGAGACGTAA
* * ** * * *
26876305 GCTAGTGTAAGATATGTCTGGGACATGCATCGGGTACGA-GATGATAGTCAGTGTAAGACCATGT
1 GCTACTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTATAAGACCATGT
*
26876369 CTGGGACATAGCATCGAC-TTGAGA-TATGAGAC-AGGGTAAGACCATGTCTGGGACATGGCATC
65 CTGGGACATAGCATCGACATTGAGACGA-GAG-CTAGGGTAAGA-CATGTCTGGGACATGGCATC
26876431 AGTACCTTAC
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 1 0.01
139 17 0.16
140 84 0.78
141 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (141 bp):
GCTACTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTATAAGACCATGTC
TGGGACATAGCATCGACATTGAGACGAGAGCTAGGGTAAGACATGTCTGGGACATGGCATCGACC
TTGAGACGTAA
Found at i:26877322 original size:42 final size:42
Alignment explanation
Indices: 26877276--26877363 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
26877266 GTCTCAGCCA
26877276 TGTGGAGGGCACGGCCTAGCACACGGGCGTGTGCATTGGCCG
1 TGTGGAGGGCACGGCCTAGCACACGGGCGTGTGCATTGGCCG
26877318 TGTGGAGGGCACGGCCTAGCACACGGGCGTGTGCATTGGCCG
1 TGTGGAGGGCACGGCCTAGCACACGGGCGTGTGCATTGGCCG
26877360 TGTG
1 TGTG
26877364 ACATCATGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.14, C:0.25, G:0.43, T:0.18
Consensus pattern (42 bp):
TGTGGAGGGCACGGCCTAGCACACGGGCGTGTGCATTGGCCG
Found at i:26878545 original size:102 final size:102
Alignment explanation
Indices: 26878428--26878642 Score: 367
Period size: 102 Copynumber: 2.1 Consensus size: 102
26878418 ATGTTGTGAG
* * *
26878428 ACACATCCCCTTTTTCACTCCTTATTTCACTCTCTTGCCAAAACCTCCTTTCTTGTCATAAGATT
1 ACACATCCCTTTTTTCAATCCTTATTTCACTCTCTTGCCAAAACCTCCTTTCTTGTCATAAAATT
26878493 GTGATACAATGAACCTGGTAAAAGTTGACCAAGCTAC
66 GTGATACAATGAACCTGGTAAAAGTTGACCAAGCTAC
26878530 ACACATCCCTTTTTTCAATCCTTATTTCACTCTCTTGCCAAAACCTCCTTTCTTGTCATAAAATT
1 ACACATCCCTTTTTTCAATCCTTATTTCACTCTCTTGCCAAAACCTCCTTTCTTGTCATAAAATT
* * *
26878595 GTGGTACAATGAACCTGGTTATAGTTGACCAAGCTAC
66 GTGATACAATGAACCTGGTAAAAGTTGACCAAGCTAC
*
26878632 ACACACCCCTT
1 ACACATCCCTT
26878643 GTGCCATCCA
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 106 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (102 bp):
ACACATCCCTTTTTTCAATCCTTATTTCACTCTCTTGCCAAAACCTCCTTTCTTGTCATAAAATT
GTGATACAATGAACCTGGTAAAAGTTGACCAAGCTAC
Found at i:26882575 original size:16 final size:17
Alignment explanation
Indices: 26882554--26882586 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26882544 GCATGAATAT
26882554 GTGAAAAATGTG-AAAA
1 GTGAAAAATGTGTAAAA
*
26882570 GTGAAACATGTGTAAAA
1 GTGAAAAATGTGTAAAA
26882587 TGGTCATACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.03, G:0.24, T:0.21
Consensus pattern (17 bp):
GTGAAAAATGTGTAAAA
Found at i:26883916 original size:31 final size:31
Alignment explanation
Indices: 26883876--26883937 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 31
26883866 TTAAATTTTA
26883876 TAAATAATTAATATTT-AT-TACTTAAAAATATT
1 TAAATAATT-ATATTTCATATA-TT-AAAATATT
26883908 TAAA-AATTATATTTCATATATTAAAATATT
1 TAAATAATTATATTTCATATATTAAAATATT
26883938 AACAACAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
30 14 0.50
31 8 0.29
32 6 0.21
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (31 bp):
TAAATAATTATATTTCATATATTAAAATATT
Done.