Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 112 of 770
Found at i:32092588 original size:27 final size:28
Alignment explanation
Indices: 32092525--32092611 Score: 90
Period size: 27 Copynumber: 3.2 Consensus size: 28
32092515 GCTCAGTTAT
* * *
32092525 CAGATA-TTGTGATAGAGTCACCAGATA
1 CAGATATTTGTGACAGAGCCACCAGAAA
* *
32092552 TAAATA-TTGTGACAGAGCCACCA-AAA
1 CAGATATTTGTGACAGAGCCACCAGAAA
* *
32092578 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATATTTGTGACAGAGCCACCAGAAA
32092606 CAGATA
1 CAGATA
32092612 ATGTGGCAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 6 0.12
27 34 0.69
28 9 0.18
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (28 bp):
CAGATATTTGTGACAGAGCCACCAGAAA
Found at i:32092616 original size:27 final size:27
Alignment explanation
Indices: 32092567--32092626 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
32092557 ATTGTGACAG
* *
32092567 AGCCACCAAAACAGATATTTGTGGCAT
1 AGCCACCAAAACAGATATATGTGGCAA
32092594 AGCCACCAGAAACAGATA-ATGTGGCAA
1 AGCCACCA-AAACAGATATATGTGGCAA
32092621 AGCCAC
1 AGCCAC
32092627 TTAACAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 21 0.70
28 9 0.30
ACGTcount: A:0.40, C:0.25, G:0.20, T:0.15
Consensus pattern (27 bp):
AGCCACCAAAACAGATATATGTGGCAA
Found at i:32093332 original size:27 final size:27
Alignment explanation
Indices: 32093276--32093397 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
32093266 GGGGCGAAAT
* * * *
32093276 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32093302 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32093329 GGTAATTCTACCCTAAAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
* *
32093356 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32093383 GGTAATTCTACCCTA
1 GGTAATTCTACCCTA
32093398 TATTTCGGCA
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 16 0.19
27 68 0.80
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:32093398 original size:27 final size:27
Alignment explanation
Indices: 32093294--32093399 Score: 160
Period size: 27 Copynumber: 3.9 Consensus size: 27
32093284 TACCCCACAA
* *
32093294 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTATAGG
*
32093321 GGTATTTCGGTAATTCTACCCTAAAGG
1 GGTATTTCGGTAATTCTACCCTATAGG
*
32093348 GGTATTGT-GATAATTCTACCCTATAGG
1 GGTATT-TCGGTAATTCTACCCTATAGG
32093375 GGTATTTCGGTAATTCTACCCTATA
1 GGTATTTCGGTAATTCTACCCTATA
32093400 TTTCGGCAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
26 1 0.01
27 70 0.97
28 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTATAGG
Found at i:32093849 original size:27 final size:27
Alignment explanation
Indices: 32093398--32093869 Score: 212
Period size: 27 Copynumber: 17.5 Consensus size: 27
32093388 TTCTACCCTA
* * * *
32093398 TATTTCGGCAATTCTACAAATTAGGGG
1 TATTTTGGTAATTTTACAAATCAGGGG
*
32093425 TATTTTGGTAATTTTACAAACCA-GGG
1 TATTTTGGTAATTTTACAAATCAGGGG
***
32093451 TATTTTGGTAATTTTATTGATC-GAGGG
1 TATTTTGGTAATTTTACAAATCAG-GGG
** * *
32093478 TATTTTGGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAATCAGGGG
** * **
32093505 TATTTCAGCAATTTTGTAAATC-GAGGG
1 TATTTTGGTAATTTTACAAATCAG-GGG
**** * **
32093532 TAAAACGGTAATTCTGTAAATC-GAGGG
1 TATTTTGGTAATTTTACAAATCAG-GGG
*** * *** *
32093559 TAAAATGGTAATTCTA-TTTTACAGGAG
1 TATTTTGGTAATTTTACAAAT-CAGGGG
** *
32093586 TATTTCAGTAATTTTAAAAATC-GAGGG
1 TATTTTGGTAATTTTACAAATCAG-GGG
** ** * *
32093613 TATTTCAGTAATTTTGTAAA-CTAAGCG
1 TATTTTGGTAATTTTACAAATC-AGGGG
*
32093640 TATTTTGGTAATTTTACAAATC-GAGGA
1 TATTTTGGTAATTTTACAAATCAG-GGG
* * *
32093667 TATTTAGGTAATTTTATAAATCGGGGG
1 TATTTTGGTAATTTTACAAATCAGGGG
* *
32093694 TACTTTGGTAATTTTACAAGTC-GAGGG
1 TATTTTGGTAATTTTACAAATCAG-GGG
*** ** **
32093721 TATTTCAATAATTTTACAGGTC-GAAAG
1 TATTTTGGTAATTTTACAAATCAG-GGG
** * *
32093748 TATTTCAGTAATTTCACAAATCATGGG
1 TATTTTGGTAATTTTACAAATCAGGGG
32093775 TATTTTGGTAATTTTACAAA-CTAGGGG
1 TATTTTGGTAATTTTACAAATC-AGGGG
* * *
32093802 TATTTTGATAATTTAACAAACCAGGGG
1 TATTTTGGTAATTTTACAAATCAGGGG
32093829 TATTTTGGTAATTTTACAAA-CTAGGGG
1 TATTTTGGTAATTTTACAAATC-AGGGG
32093856 TATTTTGGTAATTT
1 TATTTTGGTAATTT
32093870 GGTAAATTAA
Statistics
Matches: 346, Mismatches: 81, Indels: 36
0.75 0.17 0.08
Matches are distributed among these distances:
26 27 0.08
27 314 0.91
28 5 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAATCAGGGG
Found at i:32094768 original size:39 final size:40
Alignment explanation
Indices: 32094711--32094808 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 40
32094701 AGGTTGTTAC
* * *
32094711 ACCTTAAGTCCGGTTATAAAT-CCAGCACATAGCCTGGGG
1 ACCTTAAGTCCGGATATAAATACCAGCACAAAGCCTGCGG
* *
32094750 ACCTTAAGTCTGGATAT-AATACCAGCACAAAGCTTGCGG
1 ACCTTAAGTCCGGATATAAATACCAGCACAAAGCCTGCGG
*
32094789 ACCCTAAGTCCGGATATAAA
1 ACCTTAAGTCCGGATATAAA
32094809 CATCACTGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
38 3 0.06
39 45 0.90
40 2 0.04
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (40 bp):
ACCTTAAGTCCGGATATAAATACCAGCACAAAGCCTGCGG
Found at i:32107014 original size:149 final size:149
Alignment explanation
Indices: 32106744--32107042 Score: 589
Period size: 149 Copynumber: 2.0 Consensus size: 149
32106734 CTGCACTTGA
32106744 AACACACATCCAGTACCAACCAATCCAAGCATTCAAATTTAACAATTTCATCATTCATCATGGCA
1 AACACACATCCAGTACCAACCAATCCAAGCATTCAAATTTAACAATTTCATCATTCATCATGGCA
32106809 TACCATGACATGCATATGTGTTTATAAACTTAGCTTGGATTAACTTAGGCATTAACATCATTTGA
66 TACCATGACATGCATATGTGTTTATAAACTTAGCTTGGATTAACTTAGGCATTAACATCATTTGA
32106874 CCATATATACTTTACATAT
131 CCATATATACTTTACATAT
32106893 AACACACATCCAGTACCAACCAATCCAAGCATTCAAATTTAACAATTTCATCATTCATCATGGCA
1 AACACACATCCAGTACCAACCAATCCAAGCATTCAAATTTAACAATTTCATCATTCATCATGGCA
32106958 TACCATGACATGCATATGTGTTTATAAACTTAGCTTGGATTAACTTAGGCATTAACATCATTTGA
66 TACCATGACATGCATATGTGTTTATAAACTTAGCTTGGATTAACTTAGGCATTAACATCATTTGA
*
32107023 TCATATATACTTTACATAT
131 CCATATATACTTTACATAT
32107042 A
1 A
32107043 TTTAACCACC
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.32
Consensus pattern (149 bp):
AACACACATCCAGTACCAACCAATCCAAGCATTCAAATTTAACAATTTCATCATTCATCATGGCA
TACCATGACATGCATATGTGTTTATAAACTTAGCTTGGATTAACTTAGGCATTAACATCATTTGA
CCATATATACTTTACATAT
Found at i:32112402 original size:39 final size:39
Alignment explanation
Indices: 32112307--32112493 Score: 164
Period size: 40 Copynumber: 4.7 Consensus size: 39
32112297 TGATGTCCGA
* * * *
32112307 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AACCGG
* * *
32112347 ACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAATCCGG
1 GCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA-CCGG
* *
32112387 GCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAACCCGG
1 GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA-CCGG
* *
32112426 GTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAACCGG
1 GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AACCGG
** * *
32112466 GCTTCGTCCCGAAGGCATTTGAGCGAGT
1 GCTAAGTCCCGAAGGCATTCGTGCGAGT
32112494 CGTTATATCC
Statistics
Matches: 119, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 34 0.29
40 76 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAACCGG
Found at i:32112439 original size:79 final size:82
Alignment explanation
Indices: 32112302--32112486 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
32112292 TCGAATGATG
* * * *
32112302 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
32112366 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
32112382 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
32112444 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
32112462 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32112487 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:32112517 original size:79 final size:79
Alignment explanation
Indices: 32112354--32112519 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
32112344 CGGACTAGGA
* * *
32112354 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
32112419 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
32112433 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
32112497 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
32112512 TCCGAAGG
1 TCCGAAGG
32112520 TACGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:32116010 original size:40 final size:40
Alignment explanation
Indices: 32115965--32116131 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
32115955 CGGAATATAA
32115965 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
32116005 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
32116045 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32116085 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32116124 CCGGATAT
1 CCGGATAT
32116132 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32116115 original size:80 final size:79
Alignment explanation
Indices: 32115981--32116131 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
32115971 ATAATCACGT
*
32115981 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
32116046 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
32116061 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
32116124 CCGGATAT
64 CCGGATAT
32116132 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:32127774 original size:40 final size:39
Alignment explanation
Indices: 32127647--32127776 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
32127637 ATGCTGGAAA
* *
32127647 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
32127687 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
32127727 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
32127767 TTATATCCGG
1 TTATATCCGG
32127777 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:32131372 original size:79 final size:79
Alignment explanation
Indices: 32131243--32131431 Score: 296
Period size: 79 Copynumber: 2.4 Consensus size: 79
32131233 ATGTCCGGGC
*
32131243 TAAGTCCCGAAGGC--TTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
32131306 GTTACTAAATCC-GA
65 GTTACTAAATCCGGA
32131320 CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
1 -TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
32131384 AGTTACTAAATCCGGGA
64 AGTTACTAAATCC-GGA
*
32131401 TAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA
32131432 TAACCGGGCT
Statistics
Matches: 103, Mismatches: 2, Indels: 10
0.90 0.02 0.09
Matches are distributed among these distances:
78 12 0.12
79 55 0.53
80 34 0.33
81 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGA
Found at i:32131459 original size:40 final size:40
Alignment explanation
Indices: 32131236--32131431 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
32131226 TCGAATGATG
* *
32131236 TCCGGGCTAAG-TCCCGAAGGC--TTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
32131275 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32131315 TCC-GACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32131354 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
32131394 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
32131432 TAACCGGGCT
Statistics
Matches: 148, Mismatches: 3, Indels: 11
0.91 0.02 0.07
Matches are distributed among these distances:
39 58 0.39
40 81 0.55
41 9 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32131473 original size:40 final size:40
Alignment explanation
Indices: 32131327--32131478 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
32131317 CGACTAAGAT
** *
32131327 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
32131367 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
32131407 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
32131447 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
32131479 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:32131478 original size:80 final size:80
Alignment explanation
Indices: 32131236--32131466 Score: 269
Period size: 79 Copynumber: 2.9 Consensus size: 80
32131226 TCGAATGATG
* * *
32131236 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGCTACTAAATCCGGACTAAGATCCGAAGGCATT
**
32131299 TGTGCGAGTTACTAAA
65 TGAACGAGTTACTAAA
*
32131315 TCC--GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCAT
**
32131377 TTGTGCGAGTTACTAAA
64 TTGAACGAGTTACTAAA
* * *
32131394 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCAT
32131457 TTGAACGAGT
64 TTGAACGAGT
32131467 AGCTATATCC
Statistics
Matches: 135, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
77 1 0.01
78 12 0.09
79 59 0.44
80 59 0.44
81 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAA
Found at i:32138302 original size:27 final size:28
Alignment explanation
Indices: 32138272--32138341 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32138262 ATAATAAGTC
*
32138272 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
32138299 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
32138327 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32138342 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32146380 original size:27 final size:28
Alignment explanation
Indices: 32146350--32146419 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
32146340 ATAATAAGTC
*
32146350 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
32146377 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
32146405 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32146420 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32153848 original size:46 final size:46
Alignment explanation
Indices: 32153754--32153881 Score: 118
Period size: 46 Copynumber: 2.8 Consensus size: 46
32153744 GTAACCCGCC
* * * *
32153754 CATAAGTGAACTCAGACTCAACTCAATGAGCTCGAGCGTTCGCATA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGCTAGCATA
* *
32153800 CATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGC-CTAG-TTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-GCGCTAGCATA
* * *
32153846 CATCTCA-CGAACTCGGACTCAACTCAATGAGCTCGA
1 CA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGA
32153882 AACTCAAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
46 36 0.53
47 28 0.41
48 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGCTAGCATA
Found at i:32162803 original size:24 final size:23
Alignment explanation
Indices: 32162768--32162820 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
32162758 TATGTATCGG
*
32162768 CAAAAG-TCGAAATGCCAAAAAGT
1 CAAAAGCT-GAAATACCAAAAAGT
*
32162791 CGAAAAGCTGAAATACCGAAAAGT
1 C-AAAAGCTGAAATACCAAAAAGT
32162815 CAAAAG
1 CAAAAG
32162821 TTTGGCTACG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 6 0.23
24 19 0.73
25 1 0.04
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (23 bp):
CAAAAGCTGAAATACCAAAAAGT
Found at i:32163087 original size:29 final size:30
Alignment explanation
Indices: 32163055--32163144 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 30
32163045 GGCCTAACTA
*
32163055 GCCATATAAAT-GTGGTTTGGGCCTAATGG
1 GCCATATAAATGGTGATTTGGGCCTAATGG
*
32163084 GCCATAT-ATTGGTGATTTGGGCCTAATGG
1 GCCATATAAATGGTGATTTGGGCCTAATGG
* * *
32163113 GCCATATAAAT-ATGA-TTGGGCTTAGTGG
1 GCCATATAAATGGTGATTTGGGCCTAATGG
32163141 GCCA
1 GCCA
32163145 GATACAGGTA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 17 0.32
29 34 0.64
30 2 0.04
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (30 bp):
GCCATATAAATGGTGATTTGGGCCTAATGG
Found at i:32165514 original size:37 final size:37
Alignment explanation
Indices: 32165473--32165543 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
32165463 CCTAAATCTA
32165473 GAGAAAGAAAGGGGTAAGAATAAGAGAGAGGCTGTTG
1 GAGAAAGAAAGGGGTAAGAATAAGAGAGAGGCTGTTG
*
32165510 GAGAAGGAAAGGGGTAAGAATAAGAGAGAGGCTG
1 GAGAAAGAAAGGGGTAAGAATAAGAGAGAGGCTG
32165544 AGACCCCGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.44, C:0.03, G:0.42, T:0.11
Consensus pattern (37 bp):
GAGAAAGAAAGGGGTAAGAATAAGAGAGAGGCTGTTG
Found at i:32171618 original size:17 final size:18
Alignment explanation
Indices: 32171576--32171624 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
32171566 AGTTGAAAAG
32171576 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
32171595 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
32171612 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
32171625 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:32172513 original size:40 final size:40
Alignment explanation
Indices: 32172447--32172613 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
32172437 AAATTGAATG
* * *
32172447 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
32172486 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
32172526 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
32172566 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
32172606 ATATCCGG
1 ATATCCGG
32172614 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:32179632 original size:17 final size:18
Alignment explanation
Indices: 32179590--32179638 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
32179580 AGTTGAAAAG
32179590 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
32179609 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
32179626 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
32179639 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:32180526 original size:40 final size:40
Alignment explanation
Indices: 32180460--32180626 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
32180450 AAATTGAATG
* * *
32180460 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
32180499 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
32180539 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
32180579 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
32180619 ATATCCGG
1 ATATCCGG
32180627 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:32182059 original size:29 final size:28
Alignment explanation
Indices: 32181989--32182075 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 28
32181979 GGGTGTTACA
*
32181989 ATATAAATATGGTTTGGGCCTAATGGGCC
1 ATAT-AATATGATTTGGGCCTAATGGGCC
* *
32182018 ATATATTGGTGATTTGGGCCTAATGGGCC
1 ATATAAT-ATGATTTGGGCCTAATGGGCC
* *
32182047 ATATGAATATGA-TTGGGCTTAGTGGGCC
1 ATAT-AATATGATTTGGGCCTAATGGGCC
32182075 A
1 A
32182076 GATACAGGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 17 0.35
29 30 0.61
30 2 0.04
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
ATATAATATGATTTGGGCCTAATGGGCC
Found at i:32200816 original size:20 final size:20
Alignment explanation
Indices: 32200777--32200817 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
32200767 ATGTGTGTTT
32200777 TGATTTTTGATGATAGATTA
1 TGATTTTTGATGATAGATTA
*
32200797 TGATTGTTTGTTGATA-ATTA
1 TGATT-TTTGATGATAGATTA
32200817 T
1 T
32200818 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.54
Consensus pattern (20 bp):
TGATTTTTGATGATAGATTA
Found at i:32202305 original size:71 final size:71
Alignment explanation
Indices: 32202219--32202382 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
32202209 CGATTTGTCT
32202219 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
32202284 CTTTCA
66 CTTTCA
*
32202290 CGTAGCTCTCTTGTCTACATAGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
32202355 CTTTCA
66 CTTTCA
32202361 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
32202383 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:32206724 original size:43 final size:43
Alignment explanation
Indices: 32206643--32206725 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
32206633 AAGTCATACA
**
32206643 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGTCACATAATG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATAATG
*
32206686 ATGCCACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATA
1 ATGCCAATGTCCCAGAC-GTGGTCTTACAT-GTAAACACATA
32206726 TCAGAATCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 1 0.03
43 33 0.94
44 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATAATG
Found at i:32215257 original size:27 final size:27
Alignment explanation
Indices: 32215189--32215259 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
32215179 CGACTTGTAA
* *
32215189 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
32215216 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
32215243 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
32215260 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:32215266 original size:27 final size:27
Alignment explanation
Indices: 32215243--32215366 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
32215233 CAATTTACAG
32215243 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
32215270 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32215297 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
**
32215324 AATTACCAAAATACCAATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
32215351 AATTACTAAAATACCC
1 AATTACCAAAATACCC
32215367 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 81 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:32215285 original size:54 final size:53
Alignment explanation
Indices: 32215227--32215338 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
32215217 ATTACCGTTT
32215227 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
32215281 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
32215335 TACC
1 TACC
32215339 AATGGTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
53 2 0.04
54 39 0.78
55 7 0.14
56 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:32215345 original size:54 final size:54
Alignment explanation
Indices: 32215243--32215366 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
32215233 CAATTTACAG
* ** *
32215243 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
* *
32215297 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
32215351 AATTACTAAAATACCC
1 AATTACTAAAATACCC
32215367 CTGTAGGGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
Found at i:32215379 original size:27 final size:27
Alignment explanation
Indices: 32215349--32215410 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
32215339 AATGGTTTGA
32215349 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
32215376 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
32215403 AAAATTAC
1 AAAATTAC
32215411 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:32215379 original size:54 final size:54
Alignment explanation
Indices: 32215243--32215392 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 54
32215233 CAATTTACAG
* ** * ** *
32215243 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
32215297 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
32215351 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
32215393 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 79 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
Found at i:32215395 original size:81 final size:81
Alignment explanation
Indices: 32215243--32215395 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
32215233 CAATTTACAG
** **
32215243 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
32215308 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
32215324 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCAATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
32215387 AATACCCTT
64 AATACCCTT
32215396 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:32216046 original size:29 final size:29
Alignment explanation
Indices: 32216003--32216067 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
32215993 AAAATTACTG
32216003 AATTAGCTTGTGTAGTAGCGTAGATCACGA
1 AATTA-CTTGTGTAGTAGCGTAGATCACGA
32216033 AATTACTTGTGTAGTAGCGTAGATCACGA
1 AATTACTTGTGTAGTAGCGTAGATCACGA
32216062 AATTAC
1 AATTAC
32216068 CCCTAAAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 30 0.86
30 5 0.14
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (29 bp):
AATTACTTGTGTAGTAGCGTAGATCACGA
Found at i:32216100 original size:28 final size:28
Alignment explanation
Indices: 32216059--32216155 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
32216049 GCGTAGATCA
32216059 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32216087 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32216115 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
32216143 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
32216156 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:32219433 original size:27 final size:27
Alignment explanation
Indices: 32219365--32219435 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
32219355 CGACTTGTAA
* *
32219365 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
32219392 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
32219419 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
32219436 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:32219461 original size:54 final size:53
Alignment explanation
Indices: 32219403--32219541 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
32219393 ATTACCGTTT
32219403 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
32219457 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
32219511 TACCATGGTTTGAAAAATTACTAAAATACCC
1 TACCCTCAATTGTAAAATTACCAAAATACCC
32219542 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.36
54 39 0.52
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:32219528 original size:26 final size:27
Alignment explanation
Indices: 32219419--32219541 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
32219409 CAATTTACAG
32219419 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
32219446 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32219473 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
32219500 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
32219526 AATTACTAAAATACCC
1 AATTACCAAAATACCC
32219542 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:32219554 original size:53 final size:53
Alignment explanation
Indices: 32219419--32219567 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
32219409 CAATTTACAG
* ** * * *
32219419 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAAA
* **
32219473 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
* **
32219526 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
32219568 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.52
54 36 0.43
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
Found at i:32219558 original size:27 final size:27
Alignment explanation
Indices: 32219524--32219585 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
32219514 CATGGTTTGA
32219524 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
32219551 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
32219578 AAAATTAC
1 AAAATTAC
32219586 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:32219581 original size:80 final size:81
Alignment explanation
Indices: 32219419--32219587 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
32219409 CAATTTACAG
* **
32219419 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
**
32219484 TACCCTTTGTTTATAA
66 TACCCTTTGTGGATAA
* * *
32219500 AATTACCAAAATA-CCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
32219562 AATACCC-TTGTGGGGTAA
64 AATACCCTTTGT-GGATAA
32219580 AATTACCA
1 AATTACCA
32219588 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 6 0.08
80 56 0.74
81 14 0.18
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTGGATAA
Found at i:32220239 original size:28 final size:28
Alignment explanation
Indices: 32220206--32220302 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
32220196 GCGTAGATCA
32220206 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32220234 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32220262 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
32220290 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
32220303 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:32223581 original size:27 final size:27
Alignment explanation
Indices: 32223513--32223583 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
32223503 CGACTTGTAA
* *
32223513 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
32223540 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
32223567 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
32223584 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:32223609 original size:54 final size:53
Alignment explanation
Indices: 32223551--32223689 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 53
32223541 ATTACCGTTT
32223551 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
32223605 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
32223659 TACCATGGTTTGAAAAATTACTAAAATACCC
1 TACCCTCAATTGTAAAATTACCAAAATACCC
32223690 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 27 0.36
54 39 0.52
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:32223676 original size:26 final size:27
Alignment explanation
Indices: 32223567--32223689 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
32223557 CAATTTACAG
32223567 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
32223594 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
32223621 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
32223648 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
32223674 AATTACTAAAATACCC
1 AATTACCAAAATACCC
32223690 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:32223702 original size:53 final size:53
Alignment explanation
Indices: 32223567--32223715 Score: 149
Period size: 53 Copynumber: 2.8 Consensus size: 53
32223557 CAATTTACAG
* ** * * *
32223567 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATA-CCATGGTTTGAAA
* **
32223621 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
* **
32223674 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
32223716 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 43 0.52
54 36 0.43
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCATGGTTTGAAA
Found at i:32223706 original size:27 final size:27
Alignment explanation
Indices: 32223672--32223733 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
32223662 CATGGTTTGA
32223672 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
32223699 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
32223726 AAAATTAC
1 AAAATTAC
32223734 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:32223729 original size:80 final size:81
Alignment explanation
Indices: 32223567--32223735 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
32223557 CAATTTACAG
* **
32223567 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
**
32223632 TACCCTTTGTTTATAA
66 TACCCTTTGTGGATAA
* * *
32223648 AATTACCAAAATA-CCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
*
32223710 AATACCC-TTGTGGGGTAA
64 AATACCCTTTGT-GGATAA
32223728 AATTACCA
1 AATTACCA
32223736 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 6 0.08
80 56 0.74
81 14 0.18
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTGGATAA
Found at i:32224375 original size:26 final size:26
Alignment explanation
Indices: 32224340--32224391 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32224330 AGCTTGTGTA
32224340 GTAGCGTAGATCACGAAATTACCCCT
1 GTAGCGTAGATCACGAAATTACCCCT
32224366 GTAGCGTAGATCACGAAATTACCCCT
1 GTAGCGTAGATCACGAAATTACCCCT
32224392 AAAGAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (26 bp):
GTAGCGTAGATCACGAAATTACCCCT
Found at i:32224454 original size:27 final size:28
Alignment explanation
Indices: 32224379--32224474 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
32224369 GCGTAGATCA
32224379 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32224407 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
32224435 CGAAATTA-CCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
32224462 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
32224475 GGGTTTAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.05
26 2 0.03
27 24 0.38
28 34 0.54
ACGTcount: A:0.46, C:0.25, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:32226526 original size:2 final size:2
Alignment explanation
Indices: 32226484--32226511 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32226474 TCAAACCAGC
32226484 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32226512 TTTAACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32229829 original size:6 final size:6
Alignment explanation
Indices: 32229814--32229967 Score: 122
Period size: 6 Copynumber: 25.5 Consensus size: 6
32229804 AACCAAAATG
* * *
32229814 AGAATA AGAATC AGAAGC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
32229862 AGTAA-C AGAATC AGAATC AGAATC AAAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
32229911 AGAACC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
32229959 AGAATC AGA
1 AGAATC AGA
32229968 TTTAGAATTA
Statistics
Matches: 120, Mismatches: 15, Indels: 26
0.75 0.09 0.16
Matches are distributed among these distances:
5 10 0.08
6 100 0.83
7 8 0.07
8 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:32229848 original size:30 final size:30
Alignment explanation
Indices: 32229814--32230000 Score: 181
Period size: 30 Copynumber: 6.4 Consensus size: 30
32229804 AACCAAAATG
* *
32229814 AGAATAAGAATCAGAAGCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
32229844 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATCAGTAACAGAATC
* *
32229874 AGAATCAGAATCAAAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATCA-GTAACAGAATC
*
32229899 AGAATCAGAATCAGAACCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
* *
32229929 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
* * * *
32229959 AGAATCAGATTTAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATCA-GTAACAGAATC
*
32229990 AGAACCAGAAT
1 AGAATCAGAAT
32230001 GTGAATGCAA
Statistics
Matches: 132, Mismatches: 15, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
24 2 0.02
25 17 0.13
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.02
30 86 0.65
31 22 0.17
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:32229911 original size:85 final size:85
Alignment explanation
Indices: 32229814--32229999 Score: 300
Period size: 85 Copynumber: 2.2 Consensus size: 85
32229804 AACCAAAATG
* *
32229814 AGAATAAGAATCAGAAGCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAACCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
32229879 CAGAATCAAAATTAGGTGAC
66 CAGAATCAAAATTACGTGAC
*
32229899 AGAATCAGAATCAGAACCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAACCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* * *
32229964 CAGATTTAGAATTACGTGAC
66 CAGAATCAAAATTACGTGAC
*
32229984 AGAATCAGAACCAGAA
1 AGAATCAGAATCAGAA
32230000 TGTGAATGCA
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (85 bp):
AGAATCAGAATCAGAACCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTACGTGAC
Found at i:32230174 original size:27 final size:26
Alignment explanation
Indices: 32230132--32230233 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
32230122 GCTCAGTTAT
* *
32230132 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
32230159 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
32230185 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
32230213 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
32230234 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:32230419 original size:22 final size:22
Alignment explanation
Indices: 32230391--32230455 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32230381 GCAAATACAT
*
32230391 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32230413 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32230435 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32230456 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32230938 original size:27 final size:27
Alignment explanation
Indices: 32230881--32231417 Score: 736
Period size: 27 Copynumber: 20.3 Consensus size: 27
32230871 AGGGCAAAAT
* * *
32230881 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
32230907 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
32230934 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32230961 AGTAATTCTACCCTACA-GGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32230987 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32231014 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32231041 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32231068 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32231095 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32231122 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32231149 GATAATTCTACCCTACA--GG------
1 GGTAATTCTACCCTACAGGGGTATTTC
32231168 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32231195 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32231222 GGTAATTCTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32231249 GATAATTCTACCCTTCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32231276 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32231303 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32231330 GGTTATTCTACCCTACAGGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32231357 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
32231384 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32231411 GGTAATT
1 GGTAATT
32231418 TTGTAAACCA
Statistics
Matches: 453, Mismatches: 47, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.04
21 2 0.00
25 2 0.00
26 38 0.08
27 395 0.87
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:32231175 original size:19 final size:19
Alignment explanation
Indices: 32231151--32231190 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
32231141 GGTATTGCGA
32231151 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
32231170 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
32231189 TA
1 TA
32231191 TTTCGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (19 bp):
TAATTCTACCCTACAGGGG
Found at i:32231444 original size:81 final size:80
Alignment explanation
Indices: 32231186--32231471 Score: 310
Period size: 81 Copynumber: 3.5 Consensus size: 80
32231176 TACCCTACAG
* * *
32231186 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTACGA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGG
* *
32231251 TAA-TTCTACCCTTCAG
66 TAATTTCTAACC--CAA
32231267 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGG
*
32231332 TTA-TTCT-ACCCTACA
66 TAATTTCTAACCC-A-A
* * * * *
32231347 GGGGTAATTCGATAATTCTAACCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCG
1 -GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCG
* *
32231412 GTAATTTTGTAAACCAA
65 GTAA-TTTCTAACCCAA
* * * ** *
32231429 GGGCATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATT
1 GGGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTCGGTAATT
32231472 TTATTGATCG
Statistics
Matches: 175, Mismatches: 23, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 1 0.01
80 4 0.02
81 161 0.92
82 1 0.01
83 4 0.02
84 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (80 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGG
TAATTTCTAACCCAA
Found at i:32231792 original size:27 final size:27
Alignment explanation
Indices: 32231609--32231781 Score: 249
Period size: 27 Copynumber: 6.4 Consensus size: 27
32231599 GTAATTTCAT
*
32231609 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
32231636 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
**
32231663 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
32231690 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
32231717 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
32231744 AATCGAAGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
32231771 AATCGAGGGTA
1 AATCGAGGGTA
32231782 CTTTGGTAAT
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:32231792 original size:81 final size:81
Alignment explanation
Indices: 32231609--32231781 Score: 285
Period size: 81 Copynumber: 2.1 Consensus size: 81
32231599 GTAATTTCAT
* * *
32231609 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAAGGTA
32231674 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
32231690 AATCGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAATGGTAATTTTGTAAATCGAAGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAACT-GAGGGTAAAATGGTAATTTTGTAAATCGAAGGT
* *
32231754 GAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
32231771 AATCGAGGGTA
1 AATCGAGGGTA
32231782 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
80 1 0.01
81 85 0.99
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAAGGTA
AAACAGTAATTCTGTA
Found at i:32231800 original size:27 final size:26
Alignment explanation
Indices: 32231402--32231805 Score: 199
Period size: 27 Copynumber: 15.1 Consensus size: 26
32231392 TACCCTACAG
* * *
32231402 GGGTATTTCGGTAATTTTGTAAACCAA
1 GGGTATTT-GGTAATTTTATAAATCGA
* * *
32231429 GGGCATTTTGGTAATTTTACAAA-CCA
1 GGGTA-TTTGGTAATTTTATAAATCGA
**
32231455 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTA-TTTGGTAATTTTATAAATCGA
* **
32231483 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTT-GGTAATTTTATAAATC-GA
*
32231510 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTT-GGTAATTTTATAAATCGA
* *
32231537 GGATATTTGGGTAATTTTATAAACCG-
1 GGGTATTT-GGTAATTTTATAAATCGA
* * *
32231563 GGGTACTTTGGTAATTTTACAACT-GG
1 GGGTA-TTTGGTAATTTTATAAATCGA
* *
32231589 GGGTATTTCAGTAATTTCAT-AATCGA
1 GGGTATTT-GGTAATTTTATAAATCGA
** *
32231615 GGGTAAAATGGTAATTTTGTAAA-CTGA
1 GGGT-ATTTGGTAATTTTATAAATC-GA
** *
32231642 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
**** * *
32231669 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
** *
32231696 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
** *
32231723 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
* *** * *
32231750 AGGTGAAACGGTAATTCTGTAAATCGA
1 GGGT-ATTTGGTAATTTTATAAATCGA
* *
32231777 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTA-TTTGGTAATTTTATAAATCGA
32231804 GG
1 GG
32231806 ACATTTTAGT
Statistics
Matches: 308, Mismatches: 54, Indels: 30
0.79 0.14 0.08
Matches are distributed among these distances:
25 6 0.02
26 50 0.16
27 245 0.80
28 7 0.02
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.35
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTATAAATCGA
Found at i:32231818 original size:81 final size:81
Alignment explanation
Indices: 32231609--32231826 Score: 222
Period size: 81 Copynumber: 2.7 Consensus size: 81
32231599 GTAATTTCAT
* ** ** * *
32231609 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTACAAATC-GAGGACAAAATAGTAATTTTGTAAATCGAAGGT
32231673 AAAACAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* ** * *
32231690 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAAGGTG
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAATCGAAGGTA
*
32231755 AAACGGTAATTCTGTA
66 AAACAGTAATTCTGTA
*** * * *** *
32231771 AATCGAGGGTACTTTGGTAATTTTACAAATTGAGGACATTTTAGTAATTTGGTAAA
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAA
32231827 CTAAAGTATT
Statistics
Matches: 118, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 117 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGACAAAATAGTAATTTTGTAAATCGAAGGTA
AAACAGTAATTCTGTA
Found at i:32233806 original size:30 final size:29
Alignment explanation
Indices: 32233770--32233977 Score: 194
Period size: 30 Copynumber: 7.1 Consensus size: 29
32233760 AAGAAACATT
* * *
32233770 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
32233800 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
32233830 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* *
32233860 ATCAAAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
*
32233891 A-C--CA--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
*
32233915 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
* * *
32233945 TTCAGAATTACGTGACAGAATCAGAACCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
32233976 AT
1 AT
32233978 GTGAATGCAA
Statistics
Matches: 150, Mismatches: 16, Indels: 23
0.79 0.08 0.12
Matches are distributed among these distances:
24 20 0.13
25 1 0.01
27 1 0.01
28 1 0.01
29 1 0.01
30 83 0.55
31 43 0.29
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.19
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:32233890 original size:85 final size:85
Alignment explanation
Indices: 32233791--32233977 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
32233781 AACCAAAATG
32233791 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
32233856 CAGAATCAAAATTAGGTGAC
66 CAGAATCAAAATTACGTGAC
* *
32233876 AGAATCAGAATCAGAACCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
32233941 CAGATTCAGAATTACGTGAC
66 CAGAATCAAAATTACGTGAC
*
32233961 AGAATCAGAACCAGAAT
1 AGAATCAGAATCAGAAT
32233978 GTGAATGCAA
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 95 1.00
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTACGTGAC
Found at i:32233969 original size:6 final size:6
Alignment explanation
Indices: 32233791--32233952 Score: 147
Period size: 6 Copynumber: 26.8 Consensus size: 6
32233781 AACCAAAATG
*
32233791 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
32233839 AGTAA-C AGAATC AGAATC AGAATC AAAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
32233888 AGAACC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
*
32233936 AGAATC AGATTC AGAAT
1 AGAATC AGAATC AGAAT
32233953 TACGTGACAG
Statistics
Matches: 128, Mismatches: 15, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
5 10 0.08
6 108 0.84
7 8 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:32234152 original size:27 final size:26
Alignment explanation
Indices: 32234109--32234210 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
32234099 GCTCAGTTAT
* *
32234109 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
32234136 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
32234162 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
32234190 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
32234211 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:32234396 original size:22 final size:22
Alignment explanation
Indices: 32234368--32234432 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
32234358 GCAAATACGT
32234368 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
*
32234390 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32234412 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32234433 AAGGCTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 4 0.11
22 31 0.84
23 2 0.05
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32234914 original size:27 final size:27
Alignment explanation
Indices: 32234857--32235391 Score: 700
Period size: 27 Copynumber: 20.3 Consensus size: 27
32234847 AGGGCAAAAT
* * *
32234857 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
32234883 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
32234910 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32234937 AGTAATTCTACCCTACA-GGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32234963 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32234990 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32235017 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32235044 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32235071 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32235098 GGTAATTCTACCCTACA-GGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32235124 GATAATTCTACCCTACA--GG------
1 GGTAATTCTACCCTACAGGGGTATTTC
32235143 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32235170 GATAATTCTACCCTATAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32235197 GATAATTCTACCCTACAAGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32235224 GATAATTCTACCCTTCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32235251 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32235278 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32235305 GGTTATTCTACCCTACACGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32235332 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
32235359 GGTAATTCTA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32235385 GGTAATT
1 GGTAATT
32235392 TTGTAAACCA
Statistics
Matches: 453, Mismatches: 45, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.04
21 2 0.00
25 2 0.00
26 84 0.19
27 349 0.77
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:32235150 original size:19 final size:19
Alignment explanation
Indices: 32235126--32235165 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
32235116 GGTATTGCGA
32235126 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
32235145 TAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGG
32235164 TA
1 TA
32235166 TTTCGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (19 bp):
TAATTCTACCCTACAGGGG
Found at i:32235443 original size:54 final size:54
Alignment explanation
Indices: 32235350--32235579 Score: 200
Period size: 54 Copynumber: 4.3 Consensus size: 54
32235340 TAACCTACAG
* * ** * * *
32235350 GGGTATTCCGGTAATTCTACCTAC-AGGGGTATTTCGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTATAAATCGA
* * * **
32235403 GGGCATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTATAAATCGA
* * *
32235457 GGGTATTTCAGTAATTTTGCAAACT-GAGGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTTATAAATCGA
* * * * * * *
32235511 GGATATTTGGGTAATTTTATAAA-TCGGGGTACTTT-GGTAATTTTACAACTAGA
1 GGGTATTTCGGTAATTTTACAAACTAGGGGTA-TTTCGGTAATTTTATAAATCGA
*
32235564 -GGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
32235580 CATAATCGAG
Statistics
Matches: 143, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
52 13 0.09
53 41 0.29
54 89 0.62
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTATAAATCGA
Found at i:32235497 original size:81 final size:79
Alignment explanation
Indices: 32235375--32235579 Score: 227
Period size: 81 Copynumber: 2.6 Consensus size: 79
32235365 TCTACCTACA
* * * * * *
32235375 GGGGTATTTCGGTAATTTTGTAAACCAAGGGCATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGGTATTTCGGTAATTTTGCAAA-CTAGGGTATTTCGGTAATTTTACAAA-TAGAGGATATTTG
**
32235439 GGTAATTTTATTGATC
64 GGTAATTTTATAAATC
* *
32235455 GAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTG
1 G-GGGTATTTCGGTAATTTTGCAAACT-AGGGTATTTCGGTAATTTTACAAATAGAGGATATTTG
32235520 GGTAATTTTATAAATC
64 GGTAATTTTATAAATC
* *
32235536 GGGGTACTTT-GGTAATTTTAC-AACTAGAGGTATTTCAGTAATTT
1 GGGGTA-TTTCGGTAATTTTGCAAACTAG-GGTATTTCGGTAATTT
32235580 CATAATCGAG
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.02
79 19 0.18
80 18 0.17
81 68 0.64
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (79 bp):
GGGGTATTTCGGTAATTTTGCAAACTAGGGTATTTCGGTAATTTTACAAATAGAGGATATTTGGG
TAATTTTATAAATC
Found at i:32235576 original size:26 final size:26
Alignment explanation
Indices: 32235377--32235579 Score: 128
Period size: 27 Copynumber: 7.6 Consensus size: 26
32235367 TACCTACAGG
*
32235377 GGTATTTCGGTAATTTTGTA-AAC-CAA
1 GGTATTTCGGTAA-TTT-TACAACTCGA
* * * *
32235403 GGGCATTTTGGTAATTTTACAAACTAGG
1 -GGTATTTCGGTAATTTTAC-AACTCGA
* **
32235431 GGTATTTTGGTAATTTTATTGA-TCGA
1 GGTATTTCGGTAATTTTA-CAACTCGA
* *
32235457 GGGTATTTCAGTAATTTTGCAAACT-GA
1 -GGTATTTCGGTAATTTTAC-AACTCGA
*
32235484 GGGTATTTCGGTAATTTTACAAATCGA
1 -GGTATTTCGGTAATTTTACAACTCGA
* * * *
32235511 GGATATTTGGGTAATTTTATAAATCGG
1 GG-TATTTCGGTAATTTTACAACTCGA
*
32235538 GGTACTTT-GGTAATTTTACAACTAGA
1 GGTA-TTTCGGTAATTTTACAACTCGA
*
32235564 GGTATTTCAGTAATTT
1 GGTATTTCGGTAATTT
32235580 CATAATCGAG
Statistics
Matches: 139, Mismatches: 26, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.04
26 37 0.27
27 96 0.69
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAACTCGA
Found at i:32235601 original size:52 final size:53
Alignment explanation
Indices: 32235493--32235606 Score: 133
Period size: 52 Copynumber: 2.2 Consensus size: 53
32235483 AGGGTATTTC
* ** * ***
32235493 GGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGTACTTT
1 GGTAATTTTACAAATAGAGGATATTTCAGTAATTTCATAAATCGGGGTAAAAT
*
32235546 GGTAATTTTACAACTAGAGG-TATTTCAGTAATTTCAT-AATCGAGGGTAAAAT
1 GGTAATTTTACAAATAGAGGATATTTCAGTAATTTCATAAATCG-GGGTAAAAT
32235598 GGTAATTTT
1 GGTAATTTT
32235607 GTAAACTGAG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
51 5 0.10
52 29 0.56
53 18 0.35
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (53 bp):
GGTAATTTTACAAATAGAGGATATTTCAGTAATTTCATAAATCGGGGTAAAAT
Found at i:32235623 original size:27 final size:27
Alignment explanation
Indices: 32235583--32235755 Score: 222
Period size: 27 Copynumber: 6.4 Consensus size: 27
32235573 GTAATTTCAT
*
32235583 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
32235610 AA-CTGAGGGCAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
* ** *
32235637 AATCGAGAGTAAAACAGTAATTCCGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
32235664 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
32235691 AATCGAGGGTTAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
32235718 AATCGAGGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
32235745 AATCGAGGGTA
1 AATCGAGGGTA
32235756 CTTTGGTAAT
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 123 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:32235673 original size:81 final size:81
Alignment explanation
Indices: 32235583--32235755 Score: 258
Period size: 81 Copynumber: 2.1 Consensus size: 81
32235573 GTAATTTCAT
* *
32235583 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGCAAAATGGTAATTTTGTAAATCGAGAGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGCAAAATGGTAATTTTGTAAATCGAGAGT
32235647 AAAACAGTAATTCCGTA
65 AAAACAGTAATTCCGTA
** * *
32235664 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTTAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGCAAAATGGTAATTTTGTAAATCGAGAGTA
* *
32235729 AAACGGTAATTCTGTA
66 AAACAGTAATTCCGTA
32235745 AATCGAGGGTA
1 AATCGAGGGTA
32235756 CTTTGGTAAT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 82 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGCAAAATGGTAATTTTGTAAATCGAGAGTA
AAACAGTAATTCCGTA
Found at i:32235800 original size:81 final size:80
Alignment explanation
Indices: 32235583--32235780 Score: 193
Period size: 81 Copynumber: 2.5 Consensus size: 80
32235573 GTAATTTCAT
* ** * *
32235583 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGCA-AAATGGTAATTTTGTAAATCGAGAG
1 AATCGAGGGTAAAATGGTAATTCTACAAATC-GA-GG-ATTAATAGTAATTTTGTAAATCGAGAG
32235646 TAAAACAGTAATTCCGTA
63 TAAAACAGTAATTCCGTA
* * * * *
32235664 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTTAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGATT-AATAGTAATTTTGTAAATCGAGAGTA
* *
32235729 AAACGGTAATTCTGTA
65 AAACAGTAATTCCGTA
*** * *
32235745 AATCGAGGGTACTTTGGTAATTTTACAAATTGAGGA
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGA
32235781 CATTTTAGTA
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
80 2 0.02
81 96 0.97
82 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (80 bp):
AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGATTAATAGTAATTTTGTAAATCGAGAGTAA
AACAGTAATTCCGTA
Found at i:32242165 original size:28 final size:28
Alignment explanation
Indices: 32242125--32242188 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
32242115 TGTACTAGAG
*
32242125 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
32242153 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
32242181 TACCCCTA
1 TACCCCTA
32242189 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:32242335 original size:28 final size:27
Alignment explanation
Indices: 32242294--32242375 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 27
32242284 AGGAAGCGTC
*
32242294 CTGGTGGCTA-TGCCACAAATTATCTTTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
32242322 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
32242349 CTGGTGGCACTGCCAAAAAATATCTGT
1 CTGGTGGCACTGCC-ACAAATATCTGT
32242376 ATTTGGTGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 20 0.45
28 24 0.55
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:32245120 original size:49 final size:49
Alignment explanation
Indices: 32245067--32245340 Score: 403
Period size: 49 Copynumber: 5.7 Consensus size: 49
32245057 GATTCTACGC
*
32245067 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
32245116 GATGAATGTGAAAGCGTGTATATATGTGATAAGGCCTAATGGCTGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245165 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
32245214 GATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
32245261 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCGAGTGGCCTACGT
1 GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
32245310 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGCGTATATATATGTGATAAG
32245341 TCCCGAAGGG
Statistics
Matches: 206, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
47 54 0.26
48 1 0.00
49 151 0.73
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (49 bp):
GATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:32245266 original size:145 final size:144
Alignment explanation
Indices: 32245067--32245340 Score: 426
Period size: 145 Copynumber: 1.9 Consensus size: 144
32245057 GATTCTACGC
*
32245067 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG
1 GATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCG
* * * *
32245132 TGTATATATGTGATAAGGCCTAATGG-CTGATGTGATGAATGTGAAAGCGTATACATATGTGATA
65 TATACATATGTGATAAGGCCGAATGGCCT-ACGTGATGAATGTGAAAGCGTATA-A-ATGTGATA
32245196 AGGCCTAATGGCCGATGT
127 AGGCCTAATGGCCGATGT
32245214 GATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCGT
1 GATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCGT
* * *
32245278 ATACATATGTGATAAGGCCGAGTGGCCTACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATACATATGTGATAAGGCCGAATGGCCTACGTGATGAATGTGAAAGCGTATAAATGTGATAAG
32245341 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
143 10 0.08
144 1 0.01
145 89 0.75
146 2 0.02
147 16 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (144 bp):
GATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCGT
ATACATATGTGATAAGGCCGAATGGCCTACGTGATGAATGTGAAAGCGTATAAATGTGATAAGGC
CTAATGGCCGATGT
Found at i:32245280 original size:96 final size:96
Alignment explanation
Indices: 32245067--32245340 Score: 440
Period size: 96 Copynumber: 2.8 Consensus size: 96
32245057 GATTCTACGC
* *
32245067 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G
**
32245132 TGTATATATGTGATAAGGCCTAATGGCTGATGT
64 TGTATATATGTGATAAGGCCTAATGGCCAATGT
32245165 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
32245230 TATATATGTGATAAGGCCTAATGGCCAATGT
66 TATATATGTGATAAGGCCTAATGGCCAATGT
* * * * *
32245261 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCGAGTGGCCTACGTGATGGATGTGAAAGTG
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32245326 TATAAATGTGATAAG
66 TATATATGTGATAAG
32245341 TCCCGAAGGG
Statistics
Matches: 166, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
96 106 0.64
98 60 0.36
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:32247348 original size:19 final size:19
Alignment explanation
Indices: 32247324--32247362 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
32247314 ACTTACTTAT
* *
32247324 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
32247343 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
32247362 T
1 T
32247363 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:32250079 original size:50 final size:50
Alignment explanation
Indices: 32250011--32250226 Score: 182
Period size: 50 Copynumber: 4.3 Consensus size: 50
32250001 AAATCTGGTG
32250011 CACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAATA
1 CACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAATA
* * * * ** ***
32250061 CACGTAGTAGCCTCCACTTAGTACTACACACGAGATCGAAGTTATCGGGTA
1 CACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA-CCATCTAATA
* * * * * * * **
32250112 CGCATAGTATCCTACACTTAGTACTATACATGCGACCTAACTATCTGGTA
1 CACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAATA
* * * *
32250162 CATGTAGTAGCCTGCACTTAGAACTATACACGTGACCTAAAACCATCTTAA-A
1 CACGTAGTAGCCTACACTTAGTACTACACACGTGACCT--AACCATC-TAATA
*
32250214 CACATAGTAGCCT
1 CACGTAGTAGCCT
32250227 GCGCATAGTA
Statistics
Matches: 129, Mismatches: 33, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
50 74 0.57
51 36 0.28
52 18 0.14
53 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (50 bp):
CACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAATA
Found at i:32256347 original size:40 final size:40
Alignment explanation
Indices: 32256262--32256457 Score: 269
Period size: 40 Copynumber: 5.0 Consensus size: 40
32256252 TCGAATGATG
* * *
32256262 TCCGGGCTAAG-TCCCGAAGGC-TCTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
32256302 T-CGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32256341 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32256380 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
32256420 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
32256458 TAACCGGGCT
Statistics
Matches: 144, Mismatches: 6, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
39 67 0.47
40 74 0.51
41 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32256393 original size:79 final size:78
Alignment explanation
Indices: 32256262--32256457 Score: 281
Period size: 79 Copynumber: 2.5 Consensus size: 78
32256252 TCGAATGATG
* * *
32256262 TCCGGGCTAAGTCCCGAAGGC-TCTGTGCTAAGTTACTAAATCGGACTAAGATCCGAAGGCAATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACT-AATCGGACTAAGATCCGAAGGCAATT
32256326 GTGCGAGTTACTAAA
64 GTGCGAGTTACTAAA
*
32256341 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT-CGGACTAAGATCCGAAGGCAATT
32256405 GTGCGAGTTACTAAA
64 GTGCGAGTTACTAAA
*
32256420 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
32256458 TAACCGGGCT
Statistics
Matches: 107, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
78 4 0.04
79 93 0.87
80 10 0.09
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (78 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCGGACTAAGATCCGAAGGCAATTGT
GCGAGTTACTAAA
Found at i:32256484 original size:39 final size:39
Alignment explanation
Indices: 32256263--32256484 Score: 238
Period size: 39 Copynumber: 5.6 Consensus size: 39
32256253 CGAATGATGT
* *
32256263 CCGGGCTAAGTCCCGAAGGC-TCTGTGCTAAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
32256302 TCGGACTAAGAT-CCGAAGGCAATTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32256341 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32256381 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32256420 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
32256461 CCGGGCT-TGTCCCGAAGGTATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32256485 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 80 0.49
40 80 0.49
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32256503 original size:79 final size:79
Alignment explanation
Indices: 32256262--32256491 Score: 245
Period size: 79 Copynumber: 2.9 Consensus size: 79
32256252 TCGAATGATG
* * * * * *
32256262 TCCGGGCTAAGTCCCGAAGGC-TCTGTGCTAAGTTACTAAATCGGACTAAGATCCGAAGGCAATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGCTACTAAACCGGACTAAGATCCGAAGGCATTT
**
32256326 GTGCGAGTTACTAAA
65 GAACGAGTTACTAAA
* *
32256341 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAACCGGACTAAGATCCGAAGGCATT
**
32256404 TGTGCGAGTTACTAAA
64 TGAACGAGTTACTAAA
* * *
32256420 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCT-TG-TCCCGAAGGTATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AACCGGACTAAGAT-CCGAAGGCATT
32256483 TGAACGAGT
64 TGAACGAGT
32256492 AGCTATATCC
Statistics
Matches: 131, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 4 0.03
79 110 0.84
80 17 0.13
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTAAACCGGACTAAGATCCGAAGGCATTTG
AACGAGTTACTAAA
Found at i:32261960 original size:40 final size:40
Alignment explanation
Indices: 32261695--32261932 Score: 349
Period size: 40 Copynumber: 6.0 Consensus size: 40
32261685 TCGAATGATG
* * *
32261695 TCCGGGCTAAG-TCCCGAAGGC-TCTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
32261735 TCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
32261775 TCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32261815 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
32261855 TCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
32261895 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
32261933 TAACCGGGCT
Statistics
Matches: 184, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 174 0.95
41 9 0.05
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32261979 original size:120 final size:120
Alignment explanation
Indices: 32261725--32261967 Score: 350
Period size: 120 Copynumber: 2.0 Consensus size: 120
32261715 CTCTGTGCTA
*
32261725 AGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAATCTGGACTAAGATCC
1 AGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAATCGGGACTAAGATCC
* **
32261790 GAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
66 GAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACG
32261845 AGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAATCCGGGA-TAAG-TC
1 AGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAAT-CGGGACTAAGAT-
* ** *
32261908 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTTTG-TCCCGAAGGTATTTGAACG
64 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACG
32261965 AGT
1 AGT
32261968 AGCTATATCC
Statistics
Matches: 111, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
119 2 0.02
120 103 0.93
121 6 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (120 bp):
AGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAATCGGGACTAAGATCC
GAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACG
Found at i:32270279 original size:50 final size:50
Alignment explanation
Indices: 32270031--32270280 Score: 198
Period size: 50 Copynumber: 5.0 Consensus size: 50
32270021 GTAACTGAAG
* * ***
32270031 CTATCTTGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACC-AA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * * *
32270080 -TAATCGGGTGCACGTAGTACCCTACACTTAGTGCTACAGATGTGACCTAA
1 CT-ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * *
32270130 CCATTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * * ** *
32270180 GTTGTCGGGTACGCATAATAGCCTGTACTTAGTACTATTCATGCGACCTAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * *
32270231 CTATCTGGTACACATAGTAGCCTACACTTAGTACTACATATGTAACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
32270281 AACCATCTTA
Statistics
Matches: 147, Mismatches: 50, Indels: 7
0.72 0.25 0.03
Matches are distributed among these distances:
48 1 0.01
49 33 0.22
50 78 0.53
51 35 0.24
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:32274280 original size:37 final size:37
Alignment explanation
Indices: 32274228--32274361 Score: 241
Period size: 37 Copynumber: 3.6 Consensus size: 37
32274218 TTATTACGAA
32274228 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
**
32274265 GTCTTACCCAAACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
32274302 GTCTTACCCGGACATAATCTCCACATGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
32274339 GTCTTACCCGGACATAATCTCCA
1 GTCTTACCCGGACATAATCTCCA
32274362 AGTTTCATGT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 92 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:32274472 original size:48 final size:48
Alignment explanation
Indices: 32274396--32275259 Score: 1284
Period size: 48 Copynumber: 18.0 Consensus size: 48
32274386 GTTACAACAC
* * *
32274396 TCACATTAGCCATTCGGCTTTACCACATATTCTTATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32274444 TCACATTCGCCATTCGGCTTTACTACATATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32274492 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32274540 TCACATTAGCCATTCAGCTTTACCACATA-ACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32274587 TCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32274635 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32274683 TCACATTAGCCATTCGGCTGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATT---C-GGCTTTACCACATATACATATCTCATATATATT
*
32274735 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32274783 TCACATTCGCCATTCGGCTTTACCACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32274831 TCACATTAGCCATTCGGCTTTACCACATACACATATCACAAATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32274879 TCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32274927 TCACATTACCCATTCGGCTTTAACACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32274975 TCACATTAGCCATTCGGCTTTACCACATATACGTATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
32275023 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * * *
32275071 TCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
32275119 TCACATTAGCCTTTCGGCTTTACCACATATACATATCT--TATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32275165 TCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
** * *
32275213 TCACATTCTCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32275260 ATATTTATCT
Statistics
Matches: 742, Mismatches: 67, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
46 42 0.06
47 45 0.06
48 606 0.82
49 1 0.00
51 1 0.00
52 47 0.06
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
Found at i:32278916 original size:39 final size:40
Alignment explanation
Indices: 32278733--32279002 Score: 463
Period size: 40 Copynumber: 6.8 Consensus size: 40
32278723 CCAGCATGAT
* * * * * *
32278733 TGCTCTTCGGGACCTAGCCCGGATATATCACTAACACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
32278773 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
32278813 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
32278853 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
32278893 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
32278932 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
32278971 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
32279003 CTCAATTCTC
Statistics
Matches: 223, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
39 78 0.35
40 145 0.65
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:32280226 original size:37 final size:37
Alignment explanation
Indices: 32280176--32280272 Score: 194
Period size: 37 Copynumber: 2.6 Consensus size: 37
32280166 TTATTACGAA
32280176 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
32280213 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
32280250 GTCTTACCCGGACATAATCTCCA
1 GTCTTACCCGGACATAATCTCCA
32280273 AGTTTCATGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:32280382 original size:48 final size:48
Alignment explanation
Indices: 32280306--32281195 Score: 1273
Period size: 48 Copynumber: 19.0 Consensus size: 48
32280296 GTTACAACAC
* * *
32280306 TCACATTAGCCATTCGGCTTTACCACATATTCTTATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32280354 TCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32280402 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32280450 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
32280498 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32280546 TCACATTCG-CATTC-AC-TT------TATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32280585 TCACATTAGCCATTCGACTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32280633 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
32280681 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * * *
32280729 TCACATTCGCTACTCGGCTTTACCACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32280777 TCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
32280825 TCACATTAGCCATTCGGCTTTA-C-C----ACATA--T-ATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
32280864 TCACATTAGCCATTCGGCTTTACCACATATACATATCT--TATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32280910 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
*
32280958 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * * *
32281006 TCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* *
32281054 TCACATTAGCCTTTCGGCTTTACCACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32281102 TCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
* * *
32281150 TCACATTCGCCATTC-GCTTTACCACATATACATATCACACATATAT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
32281196 ATATTTATCT
Statistics
Matches: 764, Mismatches: 59, Indels: 39
0.89 0.07 0.05
Matches are distributed among these distances:
39 58 0.08
40 6 0.01
41 3 0.00
42 7 0.01
45 7 0.01
46 47 0.06
47 37 0.05
48 599 0.78
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATT
Found at i:32280852 original size:33 final size:33
Alignment explanation
Indices: 32280815--32280894 Score: 106
Period size: 39 Copynumber: 2.2 Consensus size: 33
32280805 ACACATATCA
32280815 CACATATATTTCACATTAGCCATTCGGCTTTAC
1 CACATATATTTCACATTAGCCATTCGGCTTTAC
32280848 CACATATATATATATTTCACATTAGCCATTCGGCTTTAC
1 CAC------ATATATTTCACATTAGCCATTCGGCTTTAC
32280887 CACATATA
1 CACATATA
32280895 CATATCTTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
33 8 0.20
39 33 0.80
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (33 bp):
CACATATATTTCACATTAGCCATTCGGCTTTAC
Found at i:32284173 original size:22 final size:23
Alignment explanation
Indices: 32284145--32284187 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
32284135 TATCCTCACA
*
32284145 TGGAGTGTAG-GGTTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
32284167 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
32284188 GTAGGATCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.53, T:0.26
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:32287670 original size:40 final size:40
Alignment explanation
Indices: 32287626--32287702 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
32287616 TTTTAGTGGT
* *
32287626 GTTTTCGAAAAAACGA-CGCTAAAGGTCGACCTATAGCGGC
1 GTTTT-GAAAAAACCACCGATAAAGGTCGACCTATAGCGGC
* * *
32287666 GTTTTTAAAAAACCACCGATAAAGGTTGACTTATAGC
1 GTTTTGAAAAAACCACCGATAAAGGTCGACCTATAGC
32287703 AGTATTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 8 0.26
40 23 0.74
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (40 bp):
GTTTTGAAAAAACCACCGATAAAGGTCGACCTATAGCGGC
Found at i:32288471 original size:14 final size:14
Alignment explanation
Indices: 32288452--32288511 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
32288442 TAAACACTAG
32288452 ACCCTAACCCATAA
1 ACCCTAACCCATAA
* *
32288466 ATCCTAACCCATTA
1 ACCCTAACCCATAA
32288480 ACCCTAACTCC-TAA
1 ACCCTAAC-CCATAA
* *
32288494 CCCCTAACCCTTAA
1 ACCCTAACCCATAA
32288508 ACCC
1 ACCC
32288512 ATAAACTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
13 2 0.05
14 34 0.89
15 2 0.05
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCCTAACCCATAA
Found at i:32288572 original size:22 final size:22
Alignment explanation
Indices: 32288535--32288588 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
32288525 TTTAAATCTC
32288535 AAAC-CTTAAACTATAAACCCT
1 AAACTCTTAAACTATAAACCCT
32288556 AAACTCTTAAA-TCATAAACCCT
1 AAACTCTTAAACT-ATAAACCCT
*
32288578 AAAATCTTAAA
1 AAACTCTTAAA
32288589 AATAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 5 0.17
22 25 0.83
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (22 bp):
AAACTCTTAAACTATAAACCCT
Found at i:32289090 original size:42 final size:41
Alignment explanation
Indices: 32289044--32289172 Score: 150
Period size: 42 Copynumber: 3.1 Consensus size: 41
32289034 TCAAGGTTTA
* * * *
32289044 GGGTATTGGGTTCAAATTTTAGTTTATAAGGTTTAGAGTATT
1 GGGTATTGGGTTTAGA-TTTAGTCTATAAGGTTTAGGGTATT
32289086 GGGTATTGGGTTTAGGATTTAGTCTATAAGGTTTAGGGTATT
1 GGGTATTGGGTTTA-GATTTAGTCTATAAGGTTTAGGGTATT
* * * * *
32289128 AGATATTTGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
1 GGGTATTGGGTTTA-GATTTAGTCTATAAGGTTTAGGGTATT
32289170 GGG
1 GGG
32289173 GTTTACTCTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 74 0.99
43 1 0.01
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.43
Consensus pattern (41 bp):
GGGTATTGGGTTTAGATTTAGTCTATAAGGTTTAGGGTATT
Found at i:32289118 original size:21 final size:21
Alignment explanation
Indices: 32289094--32289166 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 21
32289084 TTGGGTATTG
*
32289094 GGTTTAGGATTTAGTCTATAA
1 GGTTTAGGGTTTAGTCTATAA
* **
32289115 GGTTTAGGGTATTAG-ATATTT
1 GGTTTAGGGT-TTAGTCTATAA
*
32289136 GGTTTAGGGTTTAGTCTATAG
1 GGTTTAGGGTTTAGTCTATAA
32289157 GGTTTAGGGT
1 GGTTTAGGGT
32289167 ATTGGGGTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 4 0.09
21 35 0.81
22 4 0.09
ACGTcount: A:0.22, C:0.03, G:0.32, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTTTAGTCTATAA
Found at i:32289626 original size:84 final size:84
Alignment explanation
Indices: 32289518--32289702 Score: 289
Period size: 84 Copynumber: 2.2 Consensus size: 84
32289508 GGTAGTGGAT
* * *
32289518 TTAGTGGCGGTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATAAAAACTACGTCATTTT
*
32289583 ATGTGGTGCGGTTTAGGAA
66 ATGTGGCGCGGTTTAGGAA
* *
32289602 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATTTGAGAAACCGAATAAAAACTATGTCATTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATAAAAACTACGTCATTTT
* *
32289667 ATTTTGCGCGGTTTAGGAA
66 ATGTGGCGCGGTTTAGGAA
*
32289686 TTAGTGGCTCTATCTTA
1 TTAGTGGCGCTATCTTA
32289703 GAATACCGTA
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 92 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (84 bp):
TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATAAAAACTACGTCATTTT
ATGTGGCGCGGTTTAGGAA
Found at i:32291868 original size:40 final size:39
Alignment explanation
Indices: 32291802--32291952 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
32291792 AAATTGAATG
* * *
32291802 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
32291841 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
32291881 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
32291921 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
32291953 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:32291966 original size:40 final size:39
Alignment explanation
Indices: 32291839--32291968 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
32291829 ATGCTGGAAA
* *
32291839 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
32291879 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
32291919 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
32291959 TTATATCCGG
1 TTATATCCGG
32291969 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:32299883 original size:40 final size:40
Alignment explanation
Indices: 32299817--32299967 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
32299807 AAATTGAATG
* * *
32299817 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
32299856 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
32299896 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
32299936 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
32299968 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:32299981 original size:40 final size:40
Alignment explanation
Indices: 32299854--32299983 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
32299844 ATGCTGGAAA
* * *
32299854 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
32299894 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
32299934 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
32299974 TTATATCCGG
1 TTATATCCGG
32299984 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:32303816 original size:3 final size:3
Alignment explanation
Indices: 32303810--32303840 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
32303800 TTTTAAGCTT
32303810 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
32303841 TATTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:32304306 original size:13 final size:13
Alignment explanation
Indices: 32304288--32304317 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32304278 CCACATAATA
32304288 CATAAATATATAT
1 CATAAATATATAT
32304301 CATAAATATATAT
1 CATAAATATATAT
32304314 CATA
1 CATA
32304318 TCATAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:32304331 original size:9 final size:9
Alignment explanation
Indices: 32304319--32304391 Score: 58
Period size: 9 Copynumber: 8.1 Consensus size: 9
32304309 TATATCATAT
*
32304319 CATAAGTTA
1 CATAACTTA
32304328 CATAACTTA
1 CATAACTTA
*
32304337 CATACCTTA
1 CATAACTTA
*
32304346 CATAAATGTA
1 CATAACT-TA
* * *
32304356 TATCA-TAA
1 CATAACTTA
32304364 CATAACTTA
1 CATAACTTA
*
32304373 CAAAACTTA
1 CATAACTTA
*
32304382 CTTAACTTA
1 CATAACTTA
32304391 C
1 C
32304392 GTAATACATA
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
8 4 0.08
9 40 0.82
10 5 0.10
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:32304351 original size:45 final size:45
Alignment explanation
Indices: 32304301--32304391 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
32304291 AAATATATAT
* * * *
32304301 CATAAATATATATCATATCATAAGTTACATAACTTACATACCTTA
1 CATAAATATATATCATAACATAACTTACAAAACTTACATAACTTA
* *
32304346 CATAAATGTATATCATAACATAACTTACAAAACTTACTTAACTTA
1 CATAAATATATATCATAACATAACTTACAAAACTTACATAACTTA
32304391 C
1 C
32304392 GTAATACATA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.34
Consensus pattern (45 bp):
CATAAATATATATCATAACATAACTTACAAAACTTACATAACTTA
Found at i:32306194 original size:12 final size:12
Alignment explanation
Indices: 32306177--32306202 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32306167 AAGATCGAGG
32306177 GATGAATCTGAT
1 GATGAATCTGAT
32306189 GATGAATCTGAT
1 GATGAATCTGAT
32306201 GA
1 GA
32306203 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:32307142 original size:280 final size:280
Alignment explanation
Indices: 32306632--32307198 Score: 1071
Period size: 280 Copynumber: 2.0 Consensus size: 280
32306622 TTGATGCAAG
* *
32306632 ATTTACTCTCAGTTGCTTTACGGTGCTGTATGTCAAAAAATGTGTCGTCCTGTATAATTGAACTA
1 ATTTATTCCCAGTTGCTTTACGGTGCTGTATGTCAAAAAATGTGTCGTCCTGTATAATTGAACTA
*
32306697 TCCAATATAATGAAAGCTATTTGTGGCAAAGTTTTGGATGTTGAAGAACTTAAGAAAGTACAGGA
66 TCCAATATAATGAAAGCTATTTGTAGCAAAGTTTTGGATGTTGAAGAACTTAAGAAAGTACAGGA
*
32306762 TCGAGCCGCTTTGACTTTATACAATTTGGAGAAGATCTTTCCACCTTCCTTCTTCACTATTATGG
131 TCGAGCCACTTTGACTTTATACAATTTGGAGAAGATCTTTCCACCTTCCTTCTTCACTATTATGG
*
32306827 TGCACTTGGTAATCCATCTCCCTCACGAAACAATACTTGGTGGACAAGTTTTTTATCGATGGCTG
196 TGCACTTGGTAATCCATCTCCCTCACGAAACAATACTTGGTGGACAAGTTTTTTATCGATGGATG
32306892 TATCCTATAGAAAGGTGCTA
261 TATCCTATAGAAAGGTGCTA
32306912 ATTTATTCCCAGTTGCTTTACGGTGCTGTATGTCAAAAAATGTGTCGTCCTGTATAATTGAACTA
1 ATTTATTCCCAGTTGCTTTACGGTGCTGTATGTCAAAAAATGTGTCGTCCTGTATAATTGAACTA
32306977 TCCAATATAATGAAAGCTATTTGTAGCAAAGTTTTGGATGTTGAAGAACTTAAGAAAGTACAGGA
66 TCCAATATAATGAAAGCTATTTGTAGCAAAGTTTTGGATGTTGAAGAACTTAAGAAAGTACAGGA
32307042 TCGAGCCACTTTGACTTTATACAATTTGGAGAAGATCTTTCCACCTTCCTTCTTCACTATTATGG
131 TCGAGCCACTTTGACTTTATACAATTTGGAGAAGATCTTTCCACCTTCCTTCTTCACTATTATGG
**
32307107 TGCACTTGGTAATCCATCTCCCTCACGAAACAATACTTGGTGGACTGGTTTTTTATCGATGGATG
196 TGCACTTGGTAATCCATCTCCCTCACGAAACAATACTTGGTGGACAAGTTTTTTATCGATGGATG
32307172 TATCCTATAGAAAGGTGCTA
261 TATCCTATAGAAAGGTGCTA
32307192 ATTTATT
1 ATTTATT
32307199 TGTCAAGTAT
Statistics
Matches: 280, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
280 280 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (280 bp):
ATTTATTCCCAGTTGCTTTACGGTGCTGTATGTCAAAAAATGTGTCGTCCTGTATAATTGAACTA
TCCAATATAATGAAAGCTATTTGTAGCAAAGTTTTGGATGTTGAAGAACTTAAGAAAGTACAGGA
TCGAGCCACTTTGACTTTATACAATTTGGAGAAGATCTTTCCACCTTCCTTCTTCACTATTATGG
TGCACTTGGTAATCCATCTCCCTCACGAAACAATACTTGGTGGACAAGTTTTTTATCGATGGATG
TATCCTATAGAAAGGTGCTA
Found at i:32309817 original size:13 final size:14
Alignment explanation
Indices: 32309801--32309829 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32309791 TTATAAATAT
32309801 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
32309814 TTATAATGGTTTAA
1 TTATAATGGTTTAA
32309828 TT
1 TT
32309830 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Done.