Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 113 of 770
Found at i:32318205 original size:7 final size:6
Alignment explanation
Indices: 32318179--32318217 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
32318169 TAAACTCATA
* *
32318179 TTATTT TTATTTT TTATTT TTACTT TTATTT CTATTT TT
1 TTATTT TTA-TTT TTATTT TTATTT TTATTT TTATTT TT
32318218 TTTGAAGACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:32344210 original size:28 final size:27
Alignment explanation
Indices: 32344147--32344216 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32344137 ATAGTGAGTC
*
32344147 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
32344174 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32344202 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32344217 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32349940 original size:29 final size:29
Alignment explanation
Indices: 32349908--32350043 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
32349898 ATACCCTTCG
** * *
32349908 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
32349937 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
32349966 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
32349995 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
32350024 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
32350044 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:32350035 original size:58 final size:58
Alignment explanation
Indices: 32349883--32350042 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
32349873 AATTTAAGCC
* *** * * ** * *
32349883 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
32349941 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
32349999 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
32350043 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:32355916 original size:29 final size:29
Alignment explanation
Indices: 32355884--32356019 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
32355874 ATACCCTTCG
** * *
32355884 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
32355913 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
32355942 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
32355971 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
32356000 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
32356020 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:32356011 original size:58 final size:58
Alignment explanation
Indices: 32355859--32356018 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
32355849 AATTTAAGCC
* *** * * ** * *
32355859 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
32355917 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
32355975 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
32356019 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:32361098 original size:28 final size:27
Alignment explanation
Indices: 32361035--32361104 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32361025 ATAGTGAGTC
*
32361035 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
32361062 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32361090 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32361105 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32369918 original size:56 final size:56
Alignment explanation
Indices: 32369856--32370156 Score: 337
Period size: 56 Copynumber: 5.4 Consensus size: 56
32369846 TCCCAGATAG
* * * *
32369856 GGTCTTACTCGTAAACACATATCGAAATAACCTATCAATGCCAACGTATTAAACAT
1 GGTCTTACTCGTAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * *
32369912 GGTCTTACTCGCACAA-ACATATTGGAATCACATATCGA-GTCCAACGCATTAAACGT
1 GGTCTTACTCGTA-AACACATATCGAAATCACATATCGATG-CCAACGTATTAAACGT
* * * *
32369968 GGTCTTACTTGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGTAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * * *
32370024 TGTCTTA--C--ACACACATATCGGAATCACATATTGATGCCAACGTATTAAGCGT
1 GGTCTTACTCGTAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * *
32370076 GGTCTTACTTGTACACACATATC-AGAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGTAAACACATATCGA-AATCACATATCGATGCCAACGTATTAAACGT
*
32370132 GGTCTTACTCGTAATCACATATCGA
1 GGTCTTACTCGTAAACACATATCGA
32370157 TGCCAATTTC
Statistics
Matches: 210, Mismatches: 25, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
52 48 0.23
55 2 0.01
56 156 0.74
57 4 0.02
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGTAAACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:32370086 original size:108 final size:108
Alignment explanation
Indices: 32369856--32370139 Score: 372
Period size: 108 Copynumber: 2.6 Consensus size: 108
32369846 TCCCAGATAG
* * * * * * *
32369856 GGTCTTACTCGTAAACACATATCGAAATAACCTATCAATGCCAACGTATTAAACATGGTCTTACT
1 GGTCTTACTTGTACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTA--
*
32369921 CGCACAAACATATTGGAATCACATATCGAGTCCAACGCATTAAACGT
64 --CACAAACATATCGGAATCACATATCGAGTCCAACGCATTAAACGT
* *
32369968 GGTCTTACTTGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTTGTCTTACA
1 GGTCTTACTTGTACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACA
* * * *
32370033 CACACATATCGGAATCACATATTGA-TGCCAACGTATTAAGCGT
66 CAAACATATCGGAATCACATATCGAGT-CCAACGCATTAAACGT
* *
32370076 GGTCTTACTTGTACACACATATCAGAATCACATATCGATGCCAACATATTAAACGTGGTCTTAC
1 GGTCTTACTTGTACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTAC
32370140 TCGTAATCAC
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
107 1 0.01
108 98 0.64
112 54 0.35
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (108 bp):
GGTCTTACTTGTACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACA
CAAACATATCGGAATCACATATCGAGTCCAACGCATTAAACGT
Found at i:32370162 original size:43 final size:43
Alignment explanation
Indices: 32370101--32370371 Score: 335
Period size: 43 Copynumber: 6.3 Consensus size: 43
32370091 CACATATCAG
* *** * *
32370101 AATCACATATCGATGCCAACATATTAAACGTGGTCTTACTCGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
** * *
32370144 AATCACATATCGATGCCAATTTCCTAGACGTGATCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
** * * * * *
32370187 AATCACATATCGATGTAAACATCCTAAACGTGCTCCTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
32370230 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
* *
32370273 AATCACATATCGATGCCAATGTCTCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
** * *
32370316 AATCATGTATCGATGCTAACGTCCCAGACGTGGTTTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
32370359 AATCACATATCGA
1 AATCACATATCGA
32370372 AAATCTATGT
Statistics
Matches: 197, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 197 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
Found at i:32375658 original size:43 final size:42
Alignment explanation
Indices: 32375597--32375751 Score: 138
Period size: 42 Copynumber: 3.7 Consensus size: 42
32375587 TGTGTTTCTG
* *
32375597 TGTAAGACCACGTTTGGGACGTTGGCATCAACTTATGATTTCA
1 TGTAAGACCATGTCTGGGACGTTGGCATCAA-TTATGATTTCA
* * * * *
32375640 TGTAAGACCATGTCTGGGACATTAGCTTC-GTATATGATTTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCAAT-TATGATTTCA
* *
32375682 TGTAAGACCTTGTCTGGGACAG-TGGCATCGATATT-TGATTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATC-A-ATTATGATTTCA
* *
32375725 TGTTAGAACA-GTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
32375752 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 2 0.02
42 48 0.54
43 37 0.42
44 1 0.01
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCAATTATGATTTCA
Found at i:32377312 original size:8 final size:9
Alignment explanation
Indices: 32377284--32377323 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
32377274 GGTAACTAAA
32377284 AAAAGAAAT
1 AAAAGAAAT
*
32377293 AATGAGAAAT
1 AA-AAGAAAT
32377303 AAAA-AAAT
1 AAAAGAAAT
32377311 AAAAGAAAT
1 AAAAGAAAT
32377320 AAAA
1 AAAA
32377324 TTGTACACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 8 0.30
9 11 0.41
10 8 0.30
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (9 bp):
AAAAGAAAT
Found at i:32377312 original size:18 final size:18
Alignment explanation
Indices: 32377284--32377323 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
32377274 GGTAACTAAA
*
32377284 AAAAGAAATAATGAGAAAT
1 AAAAGAAATAA-AAGAAAT
32377303 AAAA-AAATAAAAGAAAT
1 AAAAGAAATAAAAGAAAT
32377320 AAAA
1 AAAA
32377324 TTGTACACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 10 0.50
18 6 0.30
19 4 0.20
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (18 bp):
AAAAGAAATAAAAGAAAT
Found at i:32381237 original size:47 final size:44
Alignment explanation
Indices: 32381125--32381343 Score: 158
Period size: 46 Copynumber: 4.8 Consensus size: 44
32381115 AGATACTTGT
*
32381125 GTGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTACGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTACGA
* * * *
32381171 GAGCCAATGTAAGACCATGTCTGGGACATTGCATCGG-TATTGAGACGA
1 GTGCTAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCCATT---ACGA
* *
32381219 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGA-GA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-TACGA
* ** * * *
32381262 TGTAAGCCAGTGTAAGACATGTCTGCAACATGCATCGGCTA-CATGA
1 -GT--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACGA
*
32381308 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 -GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
32381344 AGCACAAATA
Statistics
Matches: 140, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
43 2 0.01
44 15 0.11
45 16 0.11
46 59 0.42
47 26 0.19
48 22 0.16
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (44 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACGA
Found at i:32381276 original size:46 final size:45
Alignment explanation
Indices: 32381130--32381435 Score: 208
Period size: 47 Copynumber: 6.6 Consensus size: 45
32381120 CTTGTGTGCT
* * * *
32381130 AGTGTAAGA-CATGTCTGGGACATGCATTGGCCACATTACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCA-TCGCCTCA-GATGAGAGCC
* ** * * * *
32381176 AATGTAAGACCATGTCTGGGACATTGCATCGGTATTGAGACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATC-G-CCTCAGATGAGAGCC
32381224 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCCTC-AGATG-AGAGCC
** * * *
32381270 AGTGTAAGA-CATGTCTGCAACATGCATCGGCT-ACATGATGTGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGCCTCAGATGA-GAGCC
** * * *
32381314 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACAAATACGTGAAAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GC-CTCAGA--TGAGAGCC
* * * *
32381364 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTAAAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCG-CCTCAGATGAGAGCC
32381411 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
32381436 GCATTGGCAT
Statistics
Matches: 207, Mismatches: 37, Indels: 32
0.75 0.13 0.12
Matches are distributed among these distances:
42 1 0.00
43 4 0.02
44 12 0.06
45 16 0.08
46 53 0.26
47 58 0.28
48 21 0.10
49 7 0.03
50 32 0.15
51 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGCCTCAGATGAGAGCC
Found at i:32381433 original size:47 final size:48
Alignment explanation
Indices: 32381169--32381439 Score: 215
Period size: 47 Copynumber: 5.8 Consensus size: 48
32381159 GCCACATTAC
* * * * * *
32381169 GAGAGCCAATGTAAGACCATGTCTGGGACATTGCATCGGTA-TTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-ACTTAAAAT
* * * ** *
32381217 GAGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTTAAAAT
** * *
32381263 GTA-AGCCAGTGTAAGA-CATGTCTGCAACAT-GCATC-GGC-T-ACAT
1 G-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTTAAAAT
*
32381306 GATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC--AAATACGT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-ACTTAAA-A--T
* * *
32381357 GAAAGTCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTAAAAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTTAAAAT
32381404 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
32381440 TGGCATTATA
Statistics
Matches: 183, Mismatches: 26, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
42 1 0.01
43 4 0.02
44 12 0.07
45 14 0.08
46 45 0.25
47 50 0.27
48 17 0.09
49 3 0.02
50 34 0.19
51 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGACTTAAAAT
Found at i:32387531 original size:23 final size:23
Alignment explanation
Indices: 32387501--32387548 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
32387491 CAAATAAATA
32387501 ACAACATTCATAAGAATTATCTT
1 ACAACATTCATAAGAATTATCTT
*
32387524 ACAACATTTATAAGAATTATCTT
1 ACAACATTCATAAGAATTATCTT
32387547 AC
1 AC
32387549 TACTTGGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.44, C:0.17, G:0.04, T:0.35
Consensus pattern (23 bp):
ACAACATTCATAAGAATTATCTT
Found at i:32387635 original size:16 final size:16
Alignment explanation
Indices: 32387616--32387646 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32387606 CTTCTTCACT
32387616 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
32387632 TACTTACTTACTTAA
1 TACTCACTTACTTAA
32387647 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:32387652 original size:20 final size:20
Alignment explanation
Indices: 32387613--32387652 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32387603 AAACTTCTTC
* *
32387613 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
32387633 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
32387653 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:32388024 original size:55 final size:54
Alignment explanation
Indices: 32387838--32388030 Score: 195
Period size: 49 Copynumber: 3.7 Consensus size: 54
32387828 ACACGGGTAC
* * * * * *
32387838 CTTACCATTGCCATGACTTGTCATGGTCTTACGTG-GTATCCTTT--TGA--AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTAGCCTTTCCTTATGAA
* *
32387887 CTTACCATTGCCATGTCTTGACATGGTCTTACATG-GTAGCCTTTTCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTAGCCTTTCCTTATGAA
* * *
32387940 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGAG-A-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTAGCCTTT-CCTTAT-G-AA
*
32387995 CTTATCAATGCCATGTCTTGACATGGTCTTACATGA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGA
32388031 TTTCCTTACC
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
49 40 0.33
51 2 0.02
52 5 0.04
53 39 0.32
54 2 0.02
55 34 0.28
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTAGCCTTTCCTTATGAA
Found at i:32388043 original size:55 final size:53
Alignment explanation
Indices: 32387885--32388043 Score: 167
Period size: 55 Copynumber: 3.0 Consensus size: 53
32387875 ATCCTTTTGA
* * * **
32387885 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTTTCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAACCTTACCTTATG
* * * * *
32387938 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGA-GACCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAACC-TTACCTTAT-G
* **
32387992 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTA
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAACCTTACCTTA
32388044 GAAACCTTGG
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
52 2 0.02
53 40 0.47
54 1 0.01
55 41 0.48
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAACCTTACCTTATG
Found at i:32393244 original size:30 final size:30
Alignment explanation
Indices: 32393198--32393256 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
32393188 TTTACGAGCC
* *
32393198 TAGGGGCCAAAGTGCAAATATGTGAAAGTT
1 TAGGGGCCAAAATGCAAATATGTAAAAGTT
* *
32393228 TAGGGGTCAAAATGCAAATTTGTAAAAGT
1 TAGGGGCCAAAATGCAAATATGTAAAAGT
32393257 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.25
Consensus pattern (30 bp):
TAGGGGCCAAAATGCAAATATGTAAAAGTT
Found at i:32393774 original size:50 final size:50
Alignment explanation
Indices: 32393693--32393988 Score: 231
Period size: 50 Copynumber: 5.9 Consensus size: 50
32393683 TCCGTTATGA
* * *
32393693 GTCACGTGTGTAGTACTAAGTGCA-GCTTACTACGTGTACCAGATTCATAG
1 GTCACATGTGTAGTACTAAGTGCAGGC-TACTACGTATACCAGATTCTTAG
* * * *
32393743 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGCATACTC-G-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATAC-CAGATT--CTTAG
* * * * ** *
32393794 ATCACATGTATAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTCTTAG
* ** * * * **
32393844 GTCACGTGTGTAGTACTAAGTTTAAGCTACTACGTGTACCATATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTCTTAG
* * * * * *
32393894 GTCGCACGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATT--CTTAG
* * *
32393945 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGAT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGAT
32393989 GGTTATGTGA
Statistics
Matches: 186, Mismatches: 51, Indels: 16
0.74 0.20 0.06
Matches are distributed among these distances:
49 4 0.02
50 105 0.56
51 75 0.40
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTCTTAG
Found at i:32393966 original size:151 final size:151
Alignment explanation
Indices: 32393692--32393993 Score: 489
Period size: 151 Copynumber: 2.0 Consensus size: 151
32393682 ATCCGTTATG
* *
32393692 AGTCACGTGTGTAGTACTAAGTGCAGCTTACTACGTGTACCAGATTCATAGGTCACATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGAAGCTTACTACGTGTACCAGATTCATAGGTCACACGTGTAGT
* *
32393757 ACTAAGTGTAGGCTACTATGCATACTCGTTAACTTCGATCACATGTATAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTATAGTACTAAGTGCAGGCT
*
32393822 ACTACGTGTATCAGATGGTTA
131 ACTACGTATATCAGATGGTTA
* * * *
32393843 AGTCACGTGTGTAGTACTAAGTTTAAGC-TACTACGTGTACCATATTGATAGGTCGCACGTGTAG
1 AGTCACGTGTGTAGTACTAAG-TGAAGCTTACTACGTGTACCAGATTCATAGGTCACACGTGTAG
* *
32393907 TACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
65 TACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTATAGTACTAAGTGCAGGC
32393972 TACTACGTATATCAGATGGTTA
130 TACTACGTATATCAGATGGTTA
32393994 TGTGATATCC
Statistics
Matches: 139, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
151 135 0.97
152 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGAAGCTTACTACGTGTACCAGATTCATAGGTCACACGTGTAGT
ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTATAGTACTAAGTGCAGGCT
ACTACGTATATCAGATGGTTA
Found at i:32395337 original size:46 final size:46
Alignment explanation
Indices: 32395270--32395441 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
32395260 TGGTCATCCA
* *
32395270 AGCTCGTTGAGTTAAGTCTGAGTTCACTTATGGATGCGAATGTCTG
1 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCG
* * * *
32395316 AGCTCATTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
32395363 AGCTCGTTGAGTTGAGT-TCGAGTTCACTTAAGGATGCGAATGCCCG
1 AGCTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAATGTCCG
** *
32395409 AGCTCGTTGAGTTGAGTCCAAGTTCATTTATGG
1 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
32395442 GTGGGTTACA
Statistics
Matches: 100, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.55
47 25 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCG
Found at i:32395433 original size:93 final size:93
Alignment explanation
Indices: 32395264--32395433 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
32395254 GATATTTGGT
* * *
32395264 CATCCAAGCTCGTTGAGTTAAGTCTGAGTTCACTTATGGATGCGAATGTCTGAGCTCATTGAGTT
1 CATCCAAGCTCGTTGAGTTAAGTCTGAGTTCACTTAAGGATGCGAATGCCCGAGCTCATTGAGTT
**
32395329 GAGTCTGAGTTCGTGAGATGTAACTAGG
66 GAGTCCAAGTTCGTGAGATGTAACTAGG
* * *
32395357 CATCCGAGCTCGTTGAGTTGAGT-TCGAGTTCACTTAAGGATGCGAATGCCCGAGCTCGTTGAGT
1 CATCCAAGCTCGTTGAGTTAAGTCT-GAGTTCACTTAAGGATGCGAATGCCCGAGCTCATTGAGT
32395421 TGAGTCCAAGTTC
65 TGAGTCCAAGTTC
32395434 ATTTATGGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 67 0.99
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
CATCCAAGCTCGTTGAGTTAAGTCTGAGTTCACTTAAGGATGCGAATGCCCGAGCTCATTGAGTT
GAGTCCAAGTTCGTGAGATGTAACTAGG
Found at i:32396817 original size:50 final size:50
Alignment explanation
Indices: 32396737--32396832 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
32396727 TGTTACAGGT
* *
32396737 TAGGTCACATGTGTAGCACTAAGTGCAGGCTACTATGTGTACCAGATTGA
1 TAGGCCACATGTGTAGCACTAAGTGCAGGCTACTATGCGTACCAGATTGA
* *
32396787 TAGGCCACATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCAGA
1 TAGGCCACATGTGTAGCACTAAGTGCAGGCTACTATGCGTACCAGA
32396833 GAGCTTCGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (50 bp):
TAGGCCACATGTGTAGCACTAAGTGCAGGCTACTATGCGTACCAGATTGA
Found at i:32402802 original size:18 final size:20
Alignment explanation
Indices: 32402766--32402812 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
32402756 AGTTGTAAGT
32402766 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
32402786 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
32402805 ATGATATA
1 AT-ATATA
32402813 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:32403242 original size:50 final size:50
Alignment explanation
Indices: 32403167--32403393 Score: 217
Period size: 50 Copynumber: 4.5 Consensus size: 50
32403157 GTGAGTCACT
*
32403167 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCA
* * ** * * * * *
32403217 TGTGTAGTACTAAATGCAGGCTACTATGCATACC-CATTAACTTCGATCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAA--TAGGTCGCA
* * *** *
32403268 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGT--CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCA
* * *
32403316 TGTTTGTAGTACTAAGTTCAGGCTATTACGTGCACCAGATTAATAGGTCGCA
1 TG--TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCA
*
32403368 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
32403394 TGCATACCAA
Statistics
Matches: 134, Mismatches: 36, Indels: 14
0.73 0.20 0.08
Matches are distributed among these distances:
48 3 0.02
49 4 0.03
50 88 0.66
51 33 0.25
52 6 0.04
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCA
Found at i:32405672 original size:27 final size:27
Alignment explanation
Indices: 32405642--32405900 Score: 329
Period size: 27 Copynumber: 9.6 Consensus size: 27
32405632 TCAGTTTACC
32405642 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
32405669 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
32405696 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
32405723 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
32405750 AAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
32405777 AAATTACTAAAATACCCTTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
32405804 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
32405831 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
32405858 AAATTACCAAAATATACCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
32405885 AAATTACTGAAATACC
1 AAATTACCAAAATACC
32405901 TTCGACCTGT
Statistics
Matches: 199, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 199 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:32405779 original size:81 final size:81
Alignment explanation
Indices: 32405642--32405949 Score: 361
Period size: 81 Copynumber: 3.8 Consensus size: 81
32405632 TCAGTTTACC
* * * * *
32405642 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
32405707 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
** *
32405723 AAATTACCAAAATACCCTTGGTTTACAAAATTACTAAAATACCCCTAGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
* *
32405788 ATACCCTTTGTTTGTA
66 ATACCCCTGGTTTGTA
32405804 AAATTACCAAAATACCCTTGGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACT-AAAATACCCCTAGTTTGTAAAATTACCAA
** * *
32405868 AATATACCTGATTTGTG
65 AATACCCCTGGTTTGTA
** *** * * * *
32405885 AAATTACTGAAATA-CCTTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCA
1 AAATTACCAAAATACCCTT-GGTTTGTAAAATTACTAAAATACCCCTAG-TTTGTAAAATTACCA
32405948 AA
64 AA
32405950 GTGCCATTGA
Statistics
Matches: 196, Mismatches: 27, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
80 10 0.05
81 185 0.94
82 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:32405915 original size:27 final size:27
Alignment explanation
Indices: 32405885--32405945 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
32405875 CTGATTTGTG
*
32405885 AAATTACTGAAATACCTTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
32405912 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
32405939 AAATTAC
1 AAATTAC
32405946 CAAAGTGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:32406024 original size:27 final size:27
Alignment explanation
Indices: 32405994--32407183 Score: 1626
Period size: 27 Copynumber: 44.3 Consensus size: 27
32405984 CGATTTACAA
* *
32405994 AATTACCGAAATACACCTGTAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406021 AATTACC-AGAATACCCCTGTAGGGTAA
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
32406048 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406075 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
32406102 AATTACCAAAATACCCCAATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406129 AATTACTGGAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406155 AATTACCGGAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406181 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32406208 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
32406235 AATTGTCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406261 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32406288 AAATACCGGAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406315 AATTATC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
32406342 AATTACCGGAATACCCCTGTAGGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406368 AATTAACGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406395 ACA-TACCGAAATACCCCTATAGGGTAG
1 A-ATTACCGAAATACCCCTGTAGGGTAG
32406422 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406449 AATTACCGAAATACCCCTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32406476 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406503 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406530 ATTTACCGAAATACCCCTGTAGGGTCA-
1 AATTACCGAAATACCCCTGTAGGGT-AG
* * *
32406557 AATTACCGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406584 AATTACCAAAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406611 AATTACCGAAAAACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406638 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406665 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406692 AATTACTGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406718 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406745 AATTACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32406772 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406799 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406826 AATTACCGAAATATCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32406853 AATTACTGAAATACCCCTTTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32406880 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32406907 AATTACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32406934 AATTATCGAAATA-CCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32406960 AATTACCGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
32406987 AATTACCAAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32407014 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32407041 AATTACCAAAATACCCCTTATAGGGTAG
1 AATTACCGAAATACCCC-TGTAGGGTAG
* *
32407069 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32407096 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32407123 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
32407150 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
32407177 AATTACC
1 AATTACC
32407184 ATTTTGCCCC
Statistics
Matches: 1035, Mismatches: 114, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
26 146 0.14
27 863 0.83
28 26 0.03
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:32407564 original size:22 final size:22
Alignment explanation
Indices: 32407531--32407589 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
32407521 CACGTTATCG
32407531 ATGG-TTCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
32407553 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
32407575 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
32407590 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:32407779 original size:27 final size:27
Alignment explanation
Indices: 32407748--32407813 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
32407738 TCTTCTGTTA
*
32407748 AGTGGCTTTGCCAC-ATTATCTGATTCT
1 AGTGGCTTTGCCACAAATATCTG-TTCT
* *
32407775 GGTGGCTATGCCACAAATATCTGTTCT
1 AGTGGCTTTGCCACAAATATCTGTTCT
*
32407802 AGAGGCTTTGCC
1 AGTGGCTTTGCC
32407814 TCAACTTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
AGTGGCTTTGCCACAAATATCTGTTCT
Found at i:32407987 original size:6 final size:6
Alignment explanation
Indices: 32407956--32408055 Score: 98
Period size: 6 Copynumber: 16.3 Consensus size: 6
32407946 TTGCATTTAC
* *
32407956 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
32408005 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTT ATTCT- AGTTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
32408054 AT
1 AT
32408056 AATGTTTCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
5 4 0.05
6 66 0.84
7 7 0.09
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:32407994 original size:31 final size:31
Alignment explanation
Indices: 32407956--32408035 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
32407946 TTGCATTTAC
* *
32407956 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
32407987 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
32408018 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
32408036 ATTCTTATTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:32410022 original size:27 final size:27
Alignment explanation
Indices: 32410000--32410193 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
32409990 TTAGTTTACC
32410000 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
32410027 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
32410054 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
32410081 AAATTACCAAAATTCCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
32410108 AAATTATCAAAATACCCTTAGTTTGGA
1 AAATTACCAAAATACCCCTAGTTTGTA
** *
32410135 AAATTACCAAAATATTCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * *
32410162 AAATTACTGAAATACCTCTA-CTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
32410188 AAATTA
1 AAATTA
32410194 TAGACATACC
Statistics
Matches: 138, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
26 11 0.08
27 127 0.92
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:32410138 original size:81 final size:81
Alignment explanation
Indices: 32410000--32410193 Score: 248
Period size: 81 Copynumber: 2.4 Consensus size: 81
32409990 TTAGTTTACC
* *
32410000 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTTTAGAAAATTACCAAA
*
32410065 ATACCCCTGGTTTGTA
66 ATACCCCTGATTTGTA
* * *
32410081 AAATTACCAAAATTCCCCTGGTTTGTAAAATTA-TCAAAATACCCTTAGTTTGGAAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCTTAGTTTAGAAAATTACCAA
** *
32410145 AATATTCCTGATTTGTG
65 AATACCCCTGATTTGTA
** * *
32410162 AAATTACTGAAATACCTCTA-CTTGTAAAATTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTA
32410194 TAGACATACC
Statistics
Matches: 97, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 12 0.12
81 85 0.88
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTTTAGAAAATTACCAAA
ATACCCCTGATTTGTA
Found at i:32410193 original size:26 final size:27
Alignment explanation
Indices: 32410157--32410220 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 27
32410147 TATTCCTGAT
* *
32410157 TTGTGAAATTACT-GAAATACCTCTAC
1 TTGTAAAATTACTAGAAATACCTCGAC
*
32410183 TTGTAAAATTA-TAGACATACCTCGAC
1 TTGTAAAATTACTAGAAATACCTCGAC
32410209 TTGTAAAATTAC
1 TTGTAAAATTAC
32410221 CAAAGTACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 32 0.97
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (27 bp):
TTGTAAAATTACTAGAAATACCTCGAC
Found at i:32410229 original size:26 final size:25
Alignment explanation
Indices: 32410134--32410229 Score: 70
Period size: 26 Copynumber: 3.6 Consensus size: 25
32410124 CTTAGTTTGG
*
32410134 AAAATTACCAAAATATTCCT-GATTTGT
1 AAAATTACC-AAATA--CCTCGACTTGT
* * *
32410161 GAAATTACTGAAATACCTCTACTTGT
1 AAAATTAC-CAAATACCTCGACTTGT
*
32410187 AAAATTA-TAGACATACCTCGACTTGT
1 AAAATTACCA-A-ATACCTCGACTTGT
32410213 AAAATTACCAAAGTACC
1 AAAATTACCAAA-TACC
32410230 CTTGATTTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
24 1 0.02
25 5 0.09
26 36 0.65
27 13 0.24
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (25 bp):
AAAATTACCAAATACCTCGACTTGT
Found at i:32410283 original size:27 final size:27
Alignment explanation
Indices: 32410213--32410284 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
32410203 CTCGACTTGT
*
32410213 AAAATTACC-AAAGTACCCTTGATTTAC
1 AAAATTACCGAAA-TACCCTCGATTTAC
* ***
32410240 AAAATCACCGTTTTACCCTCGATTTAC
1 AAAATTACCGAAATACCCTCGATTTAC
32410267 AAAATTACCGAAATACCC
1 AAAATTACCGAAATACCC
32410285 CTGTAGGGTA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCGATTTAC
Found at i:32410299 original size:27 final size:27
Alignment explanation
Indices: 32410269--32411494 Score: 1320
Period size: 27 Copynumber: 45.3 Consensus size: 27
32410259 CGATTTACAA
32410269 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32410296 AATTACCGGAATACCCCTATGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410323 AATTACCAAAATA-CCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410349 AATTACCGGAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410375 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32410402 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410429 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410456 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410483 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410510 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410537 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410564 AAATACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410591 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410618 AATTACCGAAATACCCCTGCAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32410645 AATTACCGAAATA-CCCTGTA-GG--G
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410668 ---TA--G-AATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410689 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32410716 AATTACTGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410743 AATTACCG-AATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410769 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32410796 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410823 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410850 AATTACCGAAATACCCCTGTAGAGAAGAACAGGG
1 AATTACCGAAATACCCCTGTAG-G--G--TA--G
** * * * *
32410884 TAAAAATACCGAAATACCCCTATAAGGTAG
1 -AATTA-CCG-AAATACCCCTGTAGGGTAG
** *
32410914 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32410941 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32410968 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
32410995 AATTACTGAAATACCCCTGTAGAATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32411022 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32411049 AATTACCGAAATACCCTTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
32411076 AACAGGGTAAAATTACCGAAATACCCCTATAGGGTAG
1 -A-A---T----TACCG-AAATACCCCTGTAGGGTAG
* *
32411113 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
32411140 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
32411167 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
32411194 AATTACTGAAA-ACCCCTGTAGAATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32411220 AATTACCAAAATAACCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32411247 AATTACC-TAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
32411273 AGTTACTGAAAAAACCCCTGTAGGGTAA
1 AATTACCG-AAATACCCCTGTAGGGTAG
** * *
32411301 AATTACTAAAATA-CCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** * *
32411327 AATTATTTATATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32411354 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32411381 AATTACTGAAATACCCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
*
32411408 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
32411435 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
32411462 AATTACC-AAGATACCCTTGTGGGGTA-
1 AATTACCGAA-ATACCCCTGTAGGGTAG
32411488 AATTACC
1 AATTACC
32411495 ATTTTGCCCT
Statistics
Matches: 1011, Mismatches: 149, Indels: 79
0.82 0.12 0.06
Matches are distributed among these distances:
17 4 0.00
18 7 0.01
19 2 0.00
20 2 0.00
21 1 0.00
23 1 0.00
24 2 0.00
25 2 0.00
26 147 0.15
27 767 0.76
28 27 0.03
29 4 0.00
30 2 0.00
32 4 0.00
34 2 0.00
35 4 0.00
36 5 0.00
37 28 0.03
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:32410676 original size:17 final size:18
Alignment explanation
Indices: 32410654--32410691 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
32410644 GAATTACCGA
32410654 AATACCC-TGTAGGGTAG
1 AATACCCTTGTAGGGTAG
32410671 AATACCCTTGTAGGGTAG
1 AATACCCTTGTAGGGTAG
32410689 AAT
1 AAT
32410692 TATCGAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (18 bp):
AATACCCTTGTAGGGTAG
Found at i:32410978 original size:118 final size:118
Alignment explanation
Indices: 32410764--32411077 Score: 371
Period size: 118 Copynumber: 2.7 Consensus size: 118
32410754 ACCCTTGTAA
* * * * * *
32410764 GGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAT
1 GGTAAAAATACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTAC
*
32410829 CGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGAGAAGAACAG
66 CGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGAGAAGAACAG
**
32410882 GGTAAAAATACCGAAATACCCCTATAAGGTAGAATTATTGAAATACCCCTATAGGGTAGAATTAC
1 GGTAAAAATACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTAC
*
32410947 CGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGT----------AG
66 CGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGAGAAGAACAG
* * * * * * * *
32410990 GGTAGAATTACTGAAATACCCCTGT-AGAATAGAATGACCGAAATACCCTTGTAGGGTAGAATTA
1 GGTAAAAATACCGAAATACCCCTATAAG-GTAGAATTACCGAAATACCCCTATAGGGTAGAATTA
*
32411054 CCGAAATACCCTTGTAGAGTAGAA
65 CCGAAATACCCTTGTAGGGTAGAA
32411078 CAGGGTAAAA
Statistics
Matches: 174, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
107 2 0.01
108 76 0.44
118 96 0.55
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (118 bp):
GGTAAAAATACCGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTAC
CGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGAGAAGAACAG
Found at i:32411083 original size:118 final size:118
Alignment explanation
Indices: 32410961--32411195 Score: 332
Period size: 118 Copynumber: 2.0 Consensus size: 118
32410951 ATACCCTTGT
* *
32410961 AGGGTAGAAA-TATCGAAATACCCCTGTAGGGTAGAATTA-CTGAAATACCCCTGTAGAATAGAA
1 AGGGTA-AAATTACCGAAATACCCCTATAGGGTAGAATTATC-GAAATACCCCTGTAGAATAGAA
* *
32411024 TGACC-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGAGTAGAAC
64 TGACCAG-AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGAGTAGAAC
* ** *
32411079 AGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATT
1 AGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGAATAGAATG
* *
32411144 ACCAGAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAA
66 ACCAGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGAGTAGAA
32411196 TTACTGAAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
117 3 0.03
118 99 0.95
119 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (118 bp):
AGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGAATAGAATG
ACCAGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGAGTAGAAC
Found at i:32411113 original size:37 final size:37
Alignment explanation
Indices: 32411042--32411114 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
32411032 ATACCCTTGT
* * *
32411042 AGGGTAGAATTACCGAAATACCCTTGTAGAGTAGAAC
1 AGGGTAAAATTACCGAAATACCCCTATAGAGTAGAAC
*
32411079 AGGGTAAAATTACCGAAATACCCCTATAGGGTAGAA
1 AGGGTAAAATTACCGAAATACCCCTATAGAGTAGAA
32411115 TTATCGAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (37 bp):
AGGGTAAAATTACCGAAATACCCCTATAGAGTAGAAC
Found at i:32411143 original size:91 final size:91
Alignment explanation
Indices: 32410988--32411168 Score: 265
Period size: 91 Copynumber: 2.0 Consensus size: 91
32410978 ATACCCCTGT
* * *
32410988 AGGGTAGAATTACTGAAATACCCCTGTAGAATAGAATGACCGAAATACCCTTGTAGGGTAGAATT
1 AGGGTAAAATTACCGAAATACCCCTATAGAATAGAATGACCGAAATACCCTTGTAGGGTAGAATT
*
32411053 ACC-GAAATACCCTTGTAGAGTAGAAC
66 ACCAG-AATACCCCTGTAGAGTAGAAC
** * *
32411079 AGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATT
1 AGGGTAAAATTACCGAAATACCCCTATAGAATAGAATGACCGAAATACCCTTGTAGGGTAGAATT
*
32411144 ACCAGAATACCCCTGTAGGGTAGAA
66 ACCAGAATACCCCTGTAGAGTAGAA
32411169 TTATCGAAAT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 79 0.99
92 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (91 bp):
AGGGTAAAATTACCGAAATACCCCTATAGAATAGAATGACCGAAATACCCTTGTAGGGTAGAATT
ACCAGAATACCCCTGTAGAGTAGAAC
Found at i:32411825 original size:20 final size:20
Alignment explanation
Indices: 32411785--32411825 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32411775 TGTGAGCCGT
*
32411785 TATTGTGGGCTTCGTATTGA
1 TATTGTGGGCTTCGTACTGA
*
32411805 TATTGTGGGCTTCGTGCTGA
1 TATTGTGGGCTTCGTACTGA
32411825 T
1 T
32411826 TATAGACACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.32, T:0.44
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACTGA
Found at i:32411875 original size:22 final size:22
Alignment explanation
Indices: 32411842--32411900 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
32411832 CACGTTATTG
32411842 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
32411864 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
32411886 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
32411901 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:32412118 original size:27 final size:27
Alignment explanation
Indices: 32412066--32412123 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
32412056 TAAGTAGCTT
* *
32412066 TGCCACATTATCTGATTCTGGTGGCTA
1 TGCCACAATATCTGATTCTGGAGGCTA
* *
32412093 TGCCACAAATATCTG-TTGTGGAGGCTT
1 TGCCAC-AATATCTGATTCTGGAGGCTA
32412120 TGCC
1 TGCC
32412124 TCAACTTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.34
Consensus pattern (27 bp):
TGCCACAATATCTGATTCTGGAGGCTA
Found at i:32412304 original size:31 final size:31
Alignment explanation
Indices: 32412266--32412344 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
32412256 TTGCATTCAC
* *
32412266 ATTCTGATTTTGATTCTGTTACCTAATAT-TG
1 ATTCTGATTCTGATTCTGTCACCTAAT-TCTG
* *
32412297 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
32412328 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
32412345 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
30 1 0.02
31 41 0.98
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTG
Found at i:32412306 original size:6 final size:6
Alignment explanation
Indices: 32412295--32412353 Score: 59
Period size: 6 Copynumber: 9.7 Consensus size: 6
32412285 TACCTAATAT
* *
32412295 TGATTC TGATTC TAATTC TG-TCACC TGATTC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC
32412344 T-AGTTC TGAT
1 TGA-TTC TGAT
32412354 AATGTTTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 2 0.05
6 37 0.84
7 4 0.09
8 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
TGATTC
Found at i:32417354 original size:39 final size:40
Alignment explanation
Indices: 32417194--32417387 Score: 240
Period size: 40 Copynumber: 5.0 Consensus size: 40
32417184 TCGAATGATG
* * * *
32417194 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
32417234 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-TAGA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32417273 TCC--ACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
32417311 TCCGGACTAAGATCCGAAGGCATTTGTG-GAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
32417350 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
32417388 TAACCGGGCT
Statistics
Matches: 139, Mismatches: 8, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
37 30 0.22
38 7 0.05
39 41 0.29
40 53 0.38
41 8 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32417415 original size:40 final size:40
Alignment explanation
Indices: 32417194--32417415 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
32417184 TCGAATGATG
* * *
32417194 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
32417234 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-TAGA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32417273 TCC--ACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32417311 TCCGGACTAAGAT-CCGAAGGCATTTGTG-GAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32417350 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
32417391 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32417416 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
37 30 0.18
38 7 0.04
39 41 0.25
40 75 0.46
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32417415 original size:79 final size:78
Alignment explanation
Indices: 32417194--32417394 Score: 252
Period size: 77 Copynumber: 2.6 Consensus size: 78
32417184 TCGAATGATG
* *
32417194 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGGACTAAGATCCGAAGGCATT
*
32417258 TGTGCGAGTTATAGA
64 TGTGCGAGTTATAAA
*
32417273 TCC--ACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATAA-CCGGACTAAGATCCGAAGGCAT
32417334 TTGTG-GAGTTACTAAA
63 TTGTGCGAGTTA-TAAA
*
32417350 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCGG
32417395 GCTATGTCCC
Statistics
Matches: 106, Mismatches: 7, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
76 7 0.07
77 52 0.49
78 10 0.09
79 35 0.33
80 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTATAAA
Found at i:32417437 original size:79 final size:79
Alignment explanation
Indices: 32417201--32417438 Score: 217
Period size: 79 Copynumber: 3.0 Consensus size: 79
32417191 ATGTCCGGGC
* * *
32417201 TAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGGCATTTG-ACG
* *
32417264 AGTTA-TAGATCCA--C
63 AGTTACTAAATCCAGGT
* **
32417278 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGGAG
1 TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGACGAG
*
32417342 TTACTAAATCCGGGT
65 TTACTAAATCCAGGT
* * *
32417357 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACG
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG-ACG
*
32417420 AG-TAGCTATAT-CAGGT
63 AGTTA-CTAAATCCAGGT
32417436 TAA
1 TAA
32417439 ACTCCGAAGG
Statistics
Matches: 135, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
76 6 0.04
77 51 0.38
78 11 0.08
79 57 0.42
80 10 0.07
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGACGAGT
TACTAAATCCAGGT
Found at i:32421475 original size:29 final size:29
Alignment explanation
Indices: 32421441--32421601 Score: 216
Period size: 29 Copynumber: 5.6 Consensus size: 29
32421431 TACTCGATTT
** * *
32421441 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
32421470 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
32421499 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32421528 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32421557 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32421586 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32421602 ATCTCGTCAC
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
28 2 0.02
29 116 0.98
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32422828 original size:19 final size:19
Alignment explanation
Indices: 32422806--32422863 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
32422796 TTTTTTTCTT
*
32422806 TTCTTTGTTTTTCTTCATA
1 TTCTTTATTTTTCTTCATA
* *
32422825 TTCTCTTTTTTTTTTTCAT-
1 TTCT-TTATTTTTCTTCATA
*
32422844 TTCTTTATTCTTTCTACATA
1 TTCTTTATT-TTTCTTCATA
32422864 ATCCACTAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 4 0.13
19 15 0.48
20 12 0.39
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.69
Consensus pattern (19 bp):
TTCTTTATTTTTCTTCATA
Found at i:32422836 original size:20 final size:20
Alignment explanation
Indices: 32422795--32422847 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
32422785 AATGAACACT
*
32422795 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
32422813 TTTTTCTTCATATTCTCTTT-
1 TTTTTCTTCAT-TTCTCTTTG
*
32422833 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
32422848 TTATTCTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:32429535 original size:29 final size:28
Alignment explanation
Indices: 32429439--32429540 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 28
32429429 TACTCGATTT
* *
32429439 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT--AATTTCAAGCA
* ** * *
32429468 CGCACACATAGTGCCATACCTTCGAGCT
1 CGCACACTTAGTGCCATAATTTCAAGCA
* *
32429496 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATA-ATTTCAAGCA
32429525 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32429541 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
27 2 0.03
28 19 0.33
29 37 0.64
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCCATAATTTCAAGCA
Found at i:32430767 original size:19 final size:18
Alignment explanation
Indices: 32430733--32430801 Score: 54
Period size: 19 Copynumber: 3.8 Consensus size: 18
32430723 GAATGAACAC
*
32430733 TTTTTTT-TTC-TTTTCT
1 TTTTTTTCTTCATATTCT
32430749 TTGTTTTTCTTCATATTCT
1 TT-TTTTTCTTCATATTCT
*
32430768 CTTTTTTTTTTCAT-TTCT
1 -TTTTTTTCTTCATATTCT
*
32430786 TTATTCTTTCTACATA
1 TT-TT-TTTCTTCATA
32430802 ATCCACTAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 2 0.05
17 7 0.17
18 9 0.21
19 22 0.52
20 2 0.05
ACGTcount: A:0.10, C:0.16, G:0.01, T:0.72
Consensus pattern (18 bp):
TTTTTTTCTTCATATTCT
Found at i:32435611 original size:23 final size:23
Alignment explanation
Indices: 32435353--32435617 Score: 293
Period size: 23 Copynumber: 11.5 Consensus size: 23
32435343 GGAATCTATA
*
32435353 GGCTACATTTCAGTGGTAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
* * *
32435376 GGCTACAATATAGTGGTAGCTTT
1 GGCTACATTACAGTGGTAGCTTC
32435399 GGCTACATCT-CAGTGGTAGCTTC
1 GGCTACAT-TACAGTGGTAGCTTC
*
32435422 GGCTACAATACAGTGGTAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
* *
32435445 GGCTACAATATAGTGGTAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
32435468 GGCTACATCT-CAGTGGTAGCTTC
1 GGCTACAT-TACAGTGGTAGCTTC
* * *
32435491 GGCTTCAATACAGTGGTAGCTTT
1 GGCTACATTACAGTGGTAGCTTC
* *
32435514 GGCTACATCT-TAGTGGTAGCCTC
1 GGCTACAT-TACAGTGGTAGCTTC
* *
32435537 GGCTACAATACAGTGGTAGCTTT
1 GGCTACATTACAGTGGTAGCTTC
* *
32435560 GGCTACGTTACAGTGATAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
* ** *
32435583 AGCTATGTTACAGTGATAGCTTC
1 GGCTACATTACAGTGGTAGCTTC
*
32435606 GGCTATATTACA
1 GGCTACATTACA
32435618 ACGTGGCACT
Statistics
Matches: 205, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
22 3 0.01
23 199 0.97
24 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (23 bp):
GGCTACATTACAGTGGTAGCTTC
Found at i:32442440 original size:13 final size:13
Alignment explanation
Indices: 32442422--32442448 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32442412 AACGACGTAG
32442422 GACATGGCCGTGT
1 GACATGGCCGTGT
32442435 GACATGGCCGTGT
1 GACATGGCCGTGT
32442448 G
1 G
32442449 CATCAACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.22, G:0.41, T:0.22
Consensus pattern (13 bp):
GACATGGCCGTGT
Found at i:32444919 original size:46 final size:46
Alignment explanation
Indices: 32444852--32445014 Score: 199
Period size: 46 Copynumber: 3.5 Consensus size: 46
32444842 AACCCGCCCC
*
32444852 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
* *
32444898 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATCCA
* * *
32444946 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
32444991 TAAGTGAACTCGGACTCAACTCAA
1 TAAGTGAACTCGGACTCAACTCAA
32445015 GTATTCGGAT
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 51 0.52
47 28 0.29
48 3 0.03
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
Found at i:32444964 original size:93 final size:92
Alignment explanation
Indices: 32444857--32445026 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
32444847 GCCCCTAAGT
*
32444857 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32444922 CG-AGTTCGGATGCCTAGTTACATTTCAC
66 -GTA-TTCGGATGCCTAGTTACATTTCAC
*
32444950 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32445015 GTATTCGGATGC
66 GTATTCGGATGC
32445027 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
92 10 0.14
93 64 0.86
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
GTATTCGGATGCCTAGTTACATTTCAC
Found at i:32451802 original size:37 final size:35
Alignment explanation
Indices: 32451752--32451837 Score: 136
Period size: 37 Copynumber: 2.3 Consensus size: 35
32451742 TACGAAGTCT
32451752 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATC-GGTC
32451788 GTACCCGGACATAATCTCCACACGTAGTCATCGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGTC
32451824 TCACCCGGAACATA
1 T-ACCCGG-ACATA
32451838 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
35 1 0.02
36 10 0.21
37 36 0.77
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (35 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGTC
Found at i:32458172 original size:29 final size:29
Alignment explanation
Indices: 32458081--32458241 Score: 182
Period size: 29 Copynumber: 5.6 Consensus size: 29
32458071 TACTCGATTT
* *
32458081 CGCACACTTAGTGCCAT-TCGATTT-AAGCC
1 CGCACACTTAGTGCCATAT--ATTTCCAGCA
* *** * *
32458110 CGCACACATAGTGCCATAGCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** *
32458139 CGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32458168 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32458197 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32458226 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32458242 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 2 0.02
29 109 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32463877 original size:29 final size:29
Alignment explanation
Indices: 32463786--32463946 Score: 155
Period size: 29 Copynumber: 5.6 Consensus size: 29
32463776 TACTCGATTT
* *
32463786 CGCACACTTAGTGCCAT-TCGATTT-AAGCC
1 CGCACACTTAGTGCCATAT--ATTTCCAGCA
* *** * *
32463815 CGCACACATAGTGCCATAGCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** * *
32463844 CGCACACCCAGTGCCGTATATTTCCAGTA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32463873 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32463902 CGCACACTTAGTGCCATATATTTCCCGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32463931 GGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32463947 ATCGCGTCAC
Statistics
Matches: 107, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
28 2 0.02
29 105 0.98
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32468249 original size:46 final size:46
Alignment explanation
Indices: 32468199--32468369 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
32468189 TGGTTGAGTT
*
32468199 CGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
32468245 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* * * *
32468292 CGAATTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
32468338 CGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32468370 GTGGCGGGTT
Statistics
Matches: 101, Mismatches: 15, Indels: 18
0.75 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.54
47 27 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:32469897 original size:48 final size:47
Alignment explanation
Indices: 32469753--32469900 Score: 163
Period size: 48 Copynumber: 3.1 Consensus size: 47
32469743 GGACTATCGA
* * *
32469753 CATCGATATGTGATCCCATGTAAGACCATGT-CTGGGACGTAACATTGG
1 CATCGATATGTGATCCCATGTAAGACCATGTCCAGGTACG--GCATTGG
* * * * *
32469801 CATCGATCTATGATCCCATGTAAGACCATGTCAAGGTCATGGCGTTGG
1 CATCGATATGTGATCCCATGTAAGACCATGTCCAGGT-ACGGCATTGG
* *
32469849 CATCTATATGTGATCCCATGTAAGACCATATCCAGGATACGGCATTGG
1 CATCGATATGTGATCCCATGTAAGACCATGTCCAGG-TACGGCATTGG
32469897 CATC
1 CATC
32469901 CTACCATGTG
Statistics
Matches: 82, Mismatches: 15, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
48 77 0.94
49 3 0.04
50 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (47 bp):
CATCGATATGTGATCCCATGTAAGACCATGTCCAGGTACGGCATTGG
Found at i:32474099 original size:25 final size:25
Alignment explanation
Indices: 32474050--32474107 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
32474040 ATAAAACCTA
*
32474050 AAAATGAAATAGTATTAAAGAAAGAT
1 AAAAT-AAAAAGTATTAAAGAAAGAT
32474076 AAAATAAAAAGTACTTAAAG-AAGAT
1 AAAATAAAAAGTA-TTAAAGAAAGAT
32474101 -AAATAAA
1 AAAATAAA
32474108 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 12 0.40
26 11 0.37
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAAGAAAGAT
Found at i:32483934 original size:47 final size:46
Alignment explanation
Indices: 32483734--32484099 Score: 223
Period size: 47 Copynumber: 7.8 Consensus size: 46
32483724 TGGGATATAT
* * * *
32483734 TGCCGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCTCATATACGCG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCT-C-TG
** * * *
32483784 TGTTGATGTATGTCCCAGACATGTCTTACACTAGCA--CAACTCT-
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
* * * * *
32483827 TAGCCGGTGCGTGTCCCAGACACGTATTACACT-G-TCT-ATCTCTG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
32483871 TCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
1 T----GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
* * *
32483921 TGCCAATGCCATGTCCTAGACATGGTCTTACACTGGCTA-TCA-CAGTATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATC--TCTG
** * * *
32483970 -GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCT-GG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
* * * **
32484014 ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTTAT-AATG
1 -TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTG
* * *
32484062 TGGCTGAAGCATGTCCCAGACATGTCTTACATTGGCAC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
32484100 ACAAATCACC
Statistics
Matches: 249, Mismatches: 44, Indels: 50
0.73 0.13 0.15
Matches are distributed among these distances:
43 7 0.03
44 26 0.10
45 2 0.01
46 43 0.17
47 84 0.34
48 55 0.22
49 18 0.07
50 14 0.06
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTG
Found at i:32483985 original size:94 final size:94
Alignment explanation
Indices: 32483734--32484092 Score: 347
Period size: 94 Copynumber: 3.8 Consensus size: 94
32483724 TGGGATATAT
* * * * * *
32483734 TGCCGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCTCATA-TACGCGTGTTGATGTATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTA--TG-GCTGATGCATGTC
*
32483798 CCAGACATGTCTTACACTAGCA--CAACTCT-
63 CCAGACATGTCTTACACTAGCACTCATCTCTG
* * * * * * * *
32483827 TAGCCGGTG-CGTGTCCCAGACA-CGTATTACACTGTCTATCTCTGTCGA-GGCCGATGCATGTC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGT--ATGGCTGATGCATGTC
*
32483889 CCAGACATGTCTTACACTGGCACTCATCTCTG
63 CCAGACATGTCTTACACTAGCACTCATCTCTG
* * *
32483921 TGCCAATGCCATGTCCTAGACATGGTCTTACACTGGCTATCACAGTATGGTTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTATGGCTGATGCATGTCCCA
* *
32483986 GACATGTCTTACACTAGCTCTCATCT-GG
66 GACATGTCTTACACTAGCACTCATCTCTG
* * * * * * *
32484014 ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTTATAATGTGGCTGAAGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTATGGCTGATGCATGTCCC
32484079 AGACATGTCTTACA
65 AGACATGTCTTACA
32484093 TTGGCACACA
Statistics
Matches: 216, Mismatches: 39, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
91 31 0.14
92 15 0.07
93 26 0.12
94 125 0.58
95 19 0.09
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACAGTATGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACTCATCTCTG
Found at i:32492319 original size:28 final size:29
Alignment explanation
Indices: 32492232--32492319 Score: 119
Period size: 28 Copynumber: 3.1 Consensus size: 29
32492222 AAAGCATGAC
*
32492232 TATGTATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
32492261 TACGAATGTGATTTGGG-CTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
32492289 TATGAAT-TAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGT-GATTTGGGCCTAATGGGCCA
32492317 TAT
1 TAT
32492320 ACATGTACGT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
27 6 0.11
28 32 0.60
29 15 0.28
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.32
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:32499769 original size:16 final size:16
Alignment explanation
Indices: 32499748--32499783 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32499738 GCAAATCCCG
*
32499748 AAATGCTAAAAAGCCA
1 AAATGCCAAAAAGCCA
*
32499764 AAATGCCAAAAAGCTA
1 AAATGCCAAAAAGCCA
32499780 AAAT
1 AAAT
32499784 TTTGGCTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.58, C:0.17, G:0.11, T:0.14
Consensus pattern (16 bp):
AAATGCCAAAAAGCCA
Found at i:32500079 original size:28 final size:29
Alignment explanation
Indices: 32500019--32500086 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 29
32500009 CTATATATGT
**
32500019 GATTTGGGCCTAATGGACCATACGAATGT
1 GATTTGGGCCTAATGGACCATACGAATAA
* * *
32500048 GATTTGGGCC-AATGGGCCGTATGAATAA
1 GATTTGGGCCTAATGGACCATACGAATAA
32500076 GA-TTGGGCCTA
1 GATTTGGGCCTA
32500087 GTGGGTCATA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 7 0.21
28 16 0.48
29 10 0.30
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
GATTTGGGCCTAATGGACCATACGAATAA
Found at i:32502978 original size:48 final size:48
Alignment explanation
Indices: 32502837--32503016 Score: 178
Period size: 48 Copynumber: 3.9 Consensus size: 48
32502827 GGTTATGTTC
* *
32502837 GATCCCATGTAAGACCATGTCTGGGACATGGC-TCTGGCATCGGTATGT
1 GATCCCATGTAAGACCATGTCTGGGACTTGGCAT-TGGCATCGATATGT
* ** * * * *
32502885 AATTTCATATAAGACCATAG-CCGGG-C-T---ATCGGCATCTATATGT
1 GATCCCATGTAAGACCAT-GTCTGGGACTTGGCATTGGCATCGATATGT
*
32502928 GATCCCATGTAAGACCATGTCTGGGACTTGGCATTGGCATCGATAAGT
1 GATCCCATGTAAGACCATGTCTGGGACTTGGCATTGGCATCGATATGT
*
32502976 GATCCCATGTAAGACCATATCTGGGA-TATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACT-TGGCATTGGCATC
32503017 CTACCATGTG
Statistics
Matches: 106, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 29 0.27
44 2 0.02
45 1 0.01
46 1 0.01
47 2 0.02
48 69 0.65
49 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACTTGGCATTGGCATCGATATGT
Found at i:32505230 original size:40 final size:40
Alignment explanation
Indices: 32505045--32505223 Score: 222
Period size: 40 Copynumber: 4.5 Consensus size: 40
32505035 TCGAATGATG
* * *
32505045 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
32505085 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32505125 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32505165 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32505206 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
32505224 TTATTTGAAT
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 115 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32507061 original size:81 final size:81
Alignment explanation
Indices: 32506953--32507115 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
32506943 GATGAATTGT
32506953 GGATATGATCATGTATGTTTGATGATGGAAATGTGAGTAAATGGCATAATAACAACTAAGGCATG
1 GGATATGATCATGTATGTTTGATGATGGAAATGTGAGTAAATGGCATAATAACAACTAAGGCATG
*
32507018 AATGTATGAAATGGGA
66 AATGTATGAAATAGGA
32507034 GGATATGATCATGTATGTTTGATGATGGAAATGTGAGTAAATGGCATAATAACAACTAAGGCATG
1 GGATATGATCATGTATGTTTGATGATGGAAATGTGAGTAAATGGCATAATAACAACTAAGGCATG
32507099 AATGTATGAAATAGGA
66 AATGTATGAAATAGGA
32507115 G
1 G
32507116 TAAATTGAGG
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (81 bp):
GGATATGATCATGTATGTTTGATGATGGAAATGTGAGTAAATGGCATAATAACAACTAAGGCATG
AATGTATGAAATAGGA
Found at i:32512058 original size:46 final size:49
Alignment explanation
Indices: 32511904--32512169 Score: 229
Period size: 46 Copynumber: 5.7 Consensus size: 49
32511894 TTTGTGTGCT
* * * *
32511904 AGTGTAAGA-CATGTCTAGGACAT-GCATCGACCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGTAGAGCC
* * * * *
32511950 AGTGTAAGACCATGTCTGGGACATGGCATTGACATTGAGACG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
*
32511998 AGTGTAAGA-TATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
* *
32512044 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTACGAGATGT---GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTAGAGCC
* *** * *
32512088 AGTGTAAGACCAT-ACTGGGACATGGCATCGGCAAGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT-AGAGCC
*
32512137 AGTGTAAGACCATGTCTGGTACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
32512170 ATTATACCCT
Statistics
Matches: 181, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
44 20 0.11
45 17 0.09
46 61 0.34
47 27 0.15
48 24 0.13
49 15 0.08
50 17 0.09
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
Found at i:32527520 original size:46 final size:46
Alignment explanation
Indices: 32527470--32527642 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
32527460 TGTTTGGGCA
32527470 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32527516 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATG-TAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T-G
* * *
32527560 GCATCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
32527608 -CC-AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32527643 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
44 36 0.33
45 1 0.01
46 53 0.48
47 1 0.01
48 2 0.02
49 5 0.05
50 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32530609 original size:15 final size:15
Alignment explanation
Indices: 32530570--32530639 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
32530560 GTATCTTGGG
*
32530570 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
32530585 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
32530600 TTTCTTTATT-TGGG
1 TTTCTTTATTCTGGA
*
32530614 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
32530629 TTTCTTTATTC
1 TTTCTTTATTC
32530640 GATTTTCTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.22
15 32 0.71
16 2 0.04
ACGTcount: A:0.11, C:0.17, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:32530633 original size:29 final size:29
Alignment explanation
Indices: 32530561--32530638 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
32530551 CATAATATCG
* * *
32530561 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTAT-TTGGATCTCTC
* *
32530591 TAT-TCTGGATTTCTTTATTTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTTGGATCTCTC
32530620 TATCTTGGATTTCTTTATT
1 TATCTTGGATTTCTTTATT
32530639 CGATTTTCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 25 0.61
30 16 0.39
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTTGGATCTCTC
Found at i:32533083 original size:46 final size:45
Alignment explanation
Indices: 32533033--32533208 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 45
32533023 TGTTTGGGCA
32533033 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
32533079 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
32533126 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
32533172 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32533209 GCGGTTACAT
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.61
47 33 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:32533188 original size:93 final size:93
Alignment explanation
Indices: 32533029--32533200 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32533019 AGGATGTTTG
* *
32533029 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
32533094 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
32533122 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
32533187 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
32533201 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:32539927 original size:93 final size:93
Alignment explanation
Indices: 32539812--32539983 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
32539802 CGCCCAGAAG
**
32539812 CGAACTCGGACTCAACTCAACGAGCTCGG-GGTTCGCATCCATGAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AAGTGAACTCGGACTCAACTC
32539876 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
32539905 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32539970 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
32539984 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
93 64 0.86
94 10 0.14
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:32539980 original size:46 final size:46
Alignment explanation
Indices: 32539813--32539980 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
32539803 GCCCAGAAGC
* ** *
32539813 GAACTCGGACTCAACTCAACGAGCTCGG-GGTTCGCATCCATGAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AAGT
* * * *
32539859 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAGT
32539906 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
32539952 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
32539981 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.55
47 29 0.28
48 1 0.01
49 1 0.01
50 1 0.01
51 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
Found at i:32542409 original size:15 final size:15
Alignment explanation
Indices: 32542369--32542423 Score: 94
Period size: 15 Copynumber: 3.7 Consensus size: 15
32542359 CAAGGAAACC
32542369 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
32542384 G-ATAGAGAAATCCA
1 GAATAAAGAAATCCA
32542398 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
32542413 GAATAAAGAAA
1 GAATAAAGAAA
32542424 CCCAAGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.35
15 24 0.65
ACGTcount: A:0.60, C:0.11, G:0.16, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:32545503 original size:93 final size:91
Alignment explanation
Indices: 32545346--32545515 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 91
32545336 CGCCCATAAG
* * *
32545346 CGAACTCGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
32545411 GAGTTCGGATGCCTAGTTACATCTCA
66 GAGTTCGGATGCCTAGTTACATCTCA
* *
32545437 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC-GACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCA
32545502 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
32545516 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 7 0.10
92 30 0.42
93 35 0.49
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (91 bp):
CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCA
Found at i:32545505 original size:46 final size:46
Alignment explanation
Indices: 32545339--32545512 Score: 187
Period size: 47 Copynumber: 3.8 Consensus size: 46
32545329 TGTAACCCGC
* * * * *
32545339 CCATAAGCGAACTC-GACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
32545384 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
32545433 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
32545476 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
32545513 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 17
0.78 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 10 0.09
45 25 0.23
46 29 0.27
47 30 0.28
48 3 0.03
49 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:32545531 original size:46 final size:45
Alignment explanation
Indices: 32545387--32545531 Score: 138
Period size: 46 Copynumber: 3.1 Consensus size: 45
32545377 TTCGCATCCA
32545387 TAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * *
32545434 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-
1 T-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATC
*
32545480 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 TAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-C
32545526 TAGTGA
1 TAGTGA
32545532 CATGTCACTT
Statistics
Matches: 80, Mismatches: 8, Indels: 21
0.73 0.07 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.41
47 32 0.40
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:32547423 original size:18 final size:17
Alignment explanation
Indices: 32547388--32547421 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32547378 TATGGGCTGA
32547388 AATGGGTCGTAGGGCCC
1 AATGGGTCGTAGGGCCC
32547405 AATGGGCTCGT-GGGCCC
1 AATGGG-TCGTAGGGCCC
32547422 CACACGGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.15, C:0.26, G:0.41, T:0.18
Consensus pattern (17 bp):
AATGGGTCGTAGGGCCC
Found at i:32547699 original size:27 final size:27
Alignment explanation
Indices: 32547669--32547720 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
32547659 GACCAAAATA
32547669 CCCCTAAAGGGTAAAATGACT-ATTTTG
1 CCCCTAAAGGGT-AAATGACTGATTTTG
**
32547696 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTAAAGGGTAAATGACTGATTT
32547721 GTCTGTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (27 bp):
CCCCTAAAGGGTAAATGACTGATTTTG
Found at i:32552858 original size:47 final size:47
Alignment explanation
Indices: 32552761--32552983 Score: 205
Period size: 47 Copynumber: 4.8 Consensus size: 47
32552751 CATCTGTGTT
* *
32552761 GATGCCATGTCCCAGACA-GGTCTTACACTA--ACACATGTCAAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCTCAAGTC
*
32552805 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCTCAAGTC
*
32552852 GATGCCATGTCCCAGACATGGTCTTACACTA--ACTATCATCATCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCAC-A-CATC-TC-AAGTC
* * * * * *
32552901 GATG-CGTGTCCTAAACA-CGTCTTACACTAGCACTCATTTCAA-TGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCTCAAGT-C
* * *
32552946 TGATG-CATGTCACAGACAT-GTCTTACACTGGCGCACAT
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT
32552984 ATCACCTGCA
Statistics
Matches: 148, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 19 0.13
45 15 0.10
46 32 0.22
47 60 0.41
48 12 0.08
49 10 0.07
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCTCAAGTC
Found at i:32552955 original size:94 final size:91
Alignment explanation
Indices: 32552760--32552974 Score: 233
Period size: 94 Copynumber: 2.3 Consensus size: 91
32552750 CCATCTGTGT
* *
32552760 TGATGCCATGTCCCAGACA-GGTCTTACACTAACACATGTCAAGCCGATGCCATGTCCCAGACAT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAACACATATCAAGCCGATGCCATGTCCCAAACAT
* *
32552824 GGTCTTACACTAGCTCACATCTCAAG
66 CGTCTTACACTAGCACACATCTCAAG
* * * *
32552850 TCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCATCGAGGTCGATG-CGTGTCCTA
1 T-GATGCCATGTCCCAGACATGGTCTTACACTAAC-A-CAT-ATC-AAGCCGATGCCATGTCCCA
* *
32552914 AACA-CGTCTTACACTAGCACTCATTTCAATG
61 AACATCGTCTTACACTAGCACACATCTCAA-G
*
32552945 CTGATG-CATGTCACAGACAT-GTCTTACACT
1 -TGATGCCATGTCCCAGACATGGTCTTACACT
32552975 GGCGCACATA
Statistics
Matches: 106, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
90 1 0.01
91 18 0.17
92 14 0.13
93 11 0.10
94 37 0.35
95 17 0.16
96 8 0.08
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (91 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAACACATATCAAGCCGATGCCATGTCCCAAACAT
CGTCTTACACTAGCACACATCTCAAG
Found at i:32556183 original size:31 final size:31
Alignment explanation
Indices: 32556134--32556250 Score: 166
Period size: 31 Copynumber: 3.8 Consensus size: 31
32556124 TCAAGCTCAG
* *
32556134 CATAT-ACTGGGCCAAAGCCTTTACATTATC
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
32556164 CATGTCACTAGGCCGAAGCCTTTTA-ATTATT
1 CATATCACTGGGCCGAAGCC-TTTACATTATT
*
32556195 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
32556226 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
32556251 TGTAAACGGT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
30 7 0.09
31 65 0.86
32 4 0.05
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:32556497 original size:25 final size:25
Alignment explanation
Indices: 32556469--32556538 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
32556459 CTCTTTTAAT
*
32556469 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
32556494 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
32556519 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
32556539 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:32556776 original size:18 final size:18
Alignment explanation
Indices: 32556753--32556788 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32556743 TAATTTTACC
32556753 CCACAAAGGTATCTCGGT
1 CCACAAAGGTATCTCGGT
*
32556771 CCACAAGGGTATCTCGGT
1 CCACAAAGGTATCTCGGT
32556789 AATTCTATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (18 bp):
CCACAAAGGTATCTCGGT
Found at i:32556818 original size:27 final size:27
Alignment explanation
Indices: 32556788--32556861 Score: 139
Period size: 27 Copynumber: 2.7 Consensus size: 27
32556778 GGTATCTCGG
*
32556788 TAATTCTATCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
32556815 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
32556842 TAATTCTACCCTACAGGGGT
1 TAATTCTACCCTACAGGGGT
32556862 TGTAACAGCC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:32560301 original size:2 final size:2
Alignment explanation
Indices: 32560294--32560322 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
32560284 TCGATCGGAG
32560294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32560323 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32560447 original size:29 final size:29
Alignment explanation
Indices: 32560415--32560487 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
32560405 CTTCGAGCTC
* *
32560415 GCACACCCAGTGCCGTCTATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
32560444 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
32560473 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
32560488 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:32562020 original size:31 final size:31
Alignment explanation
Indices: 32561972--32562046 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 31
32561962 GATAGATAAA
*
32561972 AAAAATGGTAGCTCCGGCAACCTGATCAGTG
1 AAAAGTGGTAGCTCCGGCAACCTGATCAGTG
*
32562003 AAAAGTGGTAG-TACCGGCTACCTGATCAGTG
1 AAAAGTGGTAGCT-CCGGCAACCTGATCAGTG
*
32562034 AATAGTGGTAGCT
1 AAAAGTGGTAGCT
32562047 TCGGGTACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (31 bp):
AAAAGTGGTAGCTCCGGCAACCTGATCAGTG
Found at i:32562190 original size:46 final size:47
Alignment explanation
Indices: 32562123--32562284 Score: 151
Period size: 42 Copynumber: 3.5 Consensus size: 47
32562113 TGTTACTTTA
*
32562123 TAAGACCATA-TCTGGGATATGGCAT-TAGTGAGATATATGATT-CGTG
1 TAAGACCATAGT-TGGGCTATGGCATATA-TGAGATATATGATTACGTG
* * *
32562169 TAAGACCATAGTAGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGTTGGGCTATGGCAT--ATATGAGATATATGATTACGTG
* * *
32562218 TAAGACCATAGTTGGGCTATGGC--AT-CGAG--ATATGAATATGTG
1 TAAGACCATAGTTGGGCTATGGCATATATGAGATATATGATTACGTG
* *
32562260 TAAGACCGTAGCTGGGCTATGGCAT
1 TAAGACCATAGTTGGGCTATGGCAT
32562285 CATTATGTGA
Statistics
Matches: 97, Mismatches: 12, Indels: 16
0.78 0.10 0.13
Matches are distributed among these distances:
42 31 0.32
44 2 0.02
45 2 0.02
46 21 0.22
47 1 0.01
48 12 0.12
49 28 0.29
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (47 bp):
TAAGACCATAGTTGGGCTATGGCATATATGAGATATATGATTACGTG
Found at i:32562226 original size:49 final size:48
Alignment explanation
Indices: 32562154--32562259 Score: 158
Period size: 49 Copynumber: 2.2 Consensus size: 48
32562144 GCATTAGTGA
* * *
32562154 GATATATGATTCGTGTAAGACCATAGTAGGGCTATGGCATCGATATGT
1 GATATGTGATTCGTGTAAGACCATAGTAGGGCTATGGCATCGAGATAT
*
32562202 GATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGAGATAT
1 GATATGTGATT-CGTGTAAGACCATAGTAGGGCTATGGCATCGAGATAT
32562251 GAATATGTG
1 G-ATATGTG
32562260 TAAGACCGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 10 0.19
49 35 0.67
50 7 0.13
ACGTcount: A:0.29, C:0.11, G:0.28, T:0.31
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGTAGGGCTATGGCATCGAGATAT
Found at i:32562263 original size:42 final size:42
Alignment explanation
Indices: 32562215--32562331 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 42
32562205 ATGTGATTAC
*
32562215 GTGTAAGACCATAGTTGGGCTATGGCATCGAGATATGAATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGAGATATGAAGAT
* * * *
32562257 GTGTAAGACCGTAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA-GATATGAAGAT
**
32562299 GTGTAAGACCATAGTTGAACTATGGCATCGAGA
1 GTGTAAGACCATAGTTGGGCTATGGCATCGAGA
32562332 AAACGAAGTG
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.02
42 61 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCGAGATATGAAGAT
Found at i:32563164 original size:27 final size:27
Alignment explanation
Indices: 32563133--32563201 Score: 138
Period size: 27 Copynumber: 2.6 Consensus size: 27
32563123 TAAGGGGTGT
32563133 TACAGGGGTATTTCGGTAATTCTACCC
1 TACAGGGGTATTTCGGTAATTCTACCC
32563160 TACAGGGGTATTTCGGTAATTCTACCC
1 TACAGGGGTATTTCGGTAATTCTACCC
32563187 TACAGGGGTATTTCG
1 TACAGGGGTATTTCG
32563202 ATATTTTACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (27 bp):
TACAGGGGTATTTCGGTAATTCTACCC
Found at i:32563241 original size:27 final size:27
Alignment explanation
Indices: 32563189--32563290 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
32563179 TTCTACCCTA
* *
32563189 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
32563215 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GAGTATTTTGATAATTTTACAAAT
* * **
32563242 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGAGTATTTTGATAATTTTACAAAT
* *
32563269 CAGGGGTATTTTGGTAATTTTA
1 CAGGAGTATTTTGATAATTTTA
32563291 TAAACCAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
25 1 0.02
26 11 0.17
27 52 0.80
28 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
CAGGAGTATTTTGATAATTTTACAAAT
Found at i:32563302 original size:27 final size:27
Alignment explanation
Indices: 32563220--32563348 Score: 105
Period size: 27 Copynumber: 4.8 Consensus size: 27
32563210 CAAATCGAGA
* * * * *
32563220 GTATTTTGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTATAAACCAAGG
* * *
32563247 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTATAAACCAAGG
32563274 GTATTTTGGTAATTTTATAAACCAAGG
1 GTATTTTGGTAATTTTATAAACCAAGG
** * * *
32563301 GTATTTCAGTAATTTTGTAAATCGAGG
1 GTATTTTGGTAATTTTATAAACCAAGG
*** *
32563328 GTAAAATGGTAATTTTGTAAA
1 GTATTTTGGTAATTTTATAAA
32563349 TCGAGAGTAA
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GTATTTTGGTAATTTTATAAACCAAGG
Found at i:32563349 original size:27 final size:27
Alignment explanation
Indices: 32563309--32563573 Score: 352
Period size: 27 Copynumber: 9.8 Consensus size: 27
32563299 GGGTATTTCA
* *
32563309 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
32563336 GTAATTTTGTAAATCGAGAGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
32563363 GTAATTCTATAAATCGAAGGTAAAGTG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
32563390 GTAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
32563417 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32563444 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
32563471 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
32563498 GTAATTTTGTAAATC-AGGGGTAAAACA
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
32563525 GTAATTCTTTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
32563552 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
32563574 CTTTGGTAAT
Statistics
Matches: 212, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.00
27 210 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:32563586 original size:81 final size:81
Alignment explanation
Indices: 32563309--32563573 Score: 415
Period size: 81 Copynumber: 3.3 Consensus size: 81
32563299 GGGTATTTCA
* *
32563309 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGAGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATA
* **
32563374 AATCGAAGGTAAAGTG
66 AATCGAGGGTAAAACG
* * **
32563390 GTAATTCTATAAATCGAAGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATA
32563455 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* *
32563471 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATC-AGGGGTAAAACAGTAATTCTTT
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA-GGGTAAAACAGTAATTCTAT
32563535 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
32563552 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
32563574 CTTTGGTAAT
Statistics
Matches: 168, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
80 1 0.01
81 167 0.99
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:32565875 original size:31 final size:31
Alignment explanation
Indices: 32565826--32565942 Score: 137
Period size: 31 Copynumber: 3.8 Consensus size: 31
32565816 TCAAGCTCAG
* * *
32565826 CATAT-ACTGGGCCAAAGCCTTTACATTATC
1 CATATCACTAGGCCGAAGCCTTTACATTATT
* *
32565856 CATGTCACTAGGCCGAAGCCTTTTCATTATT
1 CATATCACTAGGCCGAAGCCTTTACATTATT
* ** *
32565887 CATATCACTGGGCCGAAGAGTTTTCATTATT
1 CATATCACTAGGCCGAAGCCTTTACATTATT
*
32565918 CATATCACTAGACCGAAGCCTTTAC
1 CATATCACTAGGCCGAAGCCTTTAC
32565943 TGTAAACGGT
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
30 4 0.06
31 68 0.94
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTACATTATT
Found at i:32566186 original size:24 final size:25
Alignment explanation
Indices: 32566154--32566205 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32566144 GCCTAGCCTC
* *
32566154 TTTTAAT-AACTGGGGCAAATCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
*
32566178 TTTTGATAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
32566203 TTT
1 TTT
32566206 CGGCAAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:32566213 original size:25 final size:25
Alignment explanation
Indices: 32566161--32566230 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
32566151 CTCTTTTAAT
* * *
32566161 AACTGGGGCAAATCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGACA
* *
32566186 AACTAGGGCAAAGCCCTTTTCGGCA
1 AACTGGGGCAAAGCCCTTTTCGACA
* *
32566211 AACTGGGGTATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
32566231 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGACA
Found at i:32566465 original size:27 final size:27
Alignment explanation
Indices: 32566435--32566562 Score: 168
Period size: 27 Copynumber: 4.7 Consensus size: 27
32566425 GGCAAAATGG
* * *
32566435 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATCTCGA
*
32566462 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATCTCGA
**
32566489 TAATTCTACCCTACAGGGGTAT-TTTA
1 TAATTCTACCCTACAGGGGTATCTCGA
* *
32566515 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATCTCGA
32566543 TAATTCTACCCTACAGGGGT
1 TAATTCTACCCTACAGGGGT
32566563 TGTAACAGCC
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.02
27 87 0.97
28 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATCTCGA
Found at i:32566493 original size:54 final size:54
Alignment explanation
Indices: 32566435--32566562 Score: 186
Period size: 54 Copynumber: 2.4 Consensus size: 54
32566425 GGCAAAATGG
* * *
32566435 TAATTTTACCCCACAAGGGTATCTCGA-TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTAT-TCGAGTAATTCTACCCTACAGGGGTATTTCGA
** *
32566489 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTCGAGTAATTCTACCCTACAGGGGTATTTCGA
32566543 TAATTCTACCCTACAGGGGT
1 TAATTCTACCCTACAGGGGT
32566563 TGTAACAGCC
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 2 0.03
54 65 0.97
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTCGAGTAATTCTACCCTACAGGGGTATTTCGA
Found at i:32568664 original size:31 final size:31
Alignment explanation
Indices: 32568579--32568690 Score: 111
Period size: 31 Copynumber: 3.5 Consensus size: 31
32568569 AAAAATGAAA
* * *
32568579 AGTGAAAAGTAGTAGCTTCGGCTACCTGAT-
1 AGTGAAAAGTGGTAGCTCCGGCAACCTGATC
* *
32568609 AGATAAAAAAAATGGTAGCTCCGGCAACCTGATC
1 AG-T--GAAAAGTGGTAGCTCCGGCAACCTGATC
*
32568643 AGTGAAAAGTGGTAG-TACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CCGGCAACCTGATC
*
32568674 AGTGAATAGTGGTAGCT
1 AGTGAAAAGTGGTAGCT
32568691 TCGGGTACAA
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
30 3 0.04
31 38 0.57
32 1 0.01
33 23 0.34
34 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCAACCTGATC
Found at i:32568790 original size:47 final size:46
Alignment explanation
Indices: 32568721--32568929 Score: 185
Period size: 47 Copynumber: 4.5 Consensus size: 46
32568711 ATTTCCGTAC
* * * *
32568721 AAGACCATA-TCTGGGATATGGCATCGGTGTGATATATGCTACTATAT
1 AAGACCATAGT-TGGGATATGGCATCGGTGTGATATGTGATAC-GTGT
* * *
32568768 AAGACCATAGTTGGGATATGGCATCAGTGAGATATGTGATTCGTGT
1 AAGACCATAGTTGGGATATGGCATCGGTGTGATATGTGATACGTGT
* * *
32568814 AAGACTATAGTTGGGCTATGGCATCGATATGTGATATGTGATTACGTGT
1 AAGACCATAGTTGGGATATGGCATCG--GTGTGATATGTGA-TACGTGT
* * * * *
32568863 AAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATATGTGT
1 AAGACCATAGTTGGGATATGGCATCGGTGTGATATGTGATACGTGT
* *
32568905 AAGACCATAGCTGGGCTATGGCATC
1 AAGACCATAGTTGGGATATGGCATC
32568930 ATTTTGTGAA
Statistics
Matches: 139, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
42 31 0.22
43 1 0.01
44 5 0.04
45 1 0.01
46 25 0.18
47 35 0.25
48 12 0.09
49 29 0.21
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (46 bp):
AAGACCATAGTTGGGATATGGCATCGGTGTGATATGTGATACGTGT
Found at i:32568878 original size:49 final size:48
Alignment explanation
Indices: 32568767--32568929 Score: 198
Period size: 49 Copynumber: 3.5 Consensus size: 48
32568757 TGCTACTATA
* * * *
32568767 TAAGACCATAGTTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
* *
32568813 TAAGACTATAGTTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-CGTG
*
32568862 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
32568904 TAAGACCATAGCTGGGCTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
32568930 ATTTTGTGAA
Statistics
Matches: 107, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
42 29 0.27
44 1 0.01
45 1 0.01
46 25 0.23
47 1 0.01
48 14 0.13
49 36 0.34
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
Found at i:32568905 original size:42 final size:43
Alignment explanation
Indices: 32568810--32568973 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 43
32568800 TATGTGATTC
* * *
32568810 GTGTAAGACTATAGTTGGGCTATGGCATCGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
32568857 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* *
32568901 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTTTGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
32568943 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
32568974 GAAAATGAAG
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 63 0.62
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 28 0.27
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Done.