Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 114 of 770
Found at i:32569814 original size:27 final size:27
Alignment explanation
Indices: 32569782--32569845 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
32569772 GGGGTGTTAT
32569782 AGGGGTATTTCGGTAAATCTACCCTAC
1 AGGGGTATTTCGGTAAATCTACCCTAC
* *
32569809 TGGGGTATTTCGGTAATTCTACCCTAC
1 AGGGGTATTTCGGTAAATCTACCCTAC
32569836 AGGGGTATTT
1 AGGGGTATTT
32569846 TGATATTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (27 bp):
AGGGGTATTTCGGTAAATCTACCCTAC
Found at i:32569888 original size:27 final size:27
Alignment explanation
Indices: 32569835--32569935 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
32569825 TTCTACCCTA
*
32569835 CAGGGGTATTTTGAT-ATTTTACAAAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
32569861 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GAGTATTTTGATAATTTTACAAAT
* * **
32569888 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGAGTATTTTGATAATTTTACAAAT
* *
32569915 CAGGGGTATTTTGGTAATTTT
1 CAGGAGTATTTTGATAATTTT
32569936 GTAAACTAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
25 1 0.02
26 12 0.18
27 51 0.78
28 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
CAGGAGTATTTTGATAATTTTACAAAT
Found at i:32569948 original size:27 final size:27
Alignment explanation
Indices: 32569891--32569976 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 27
32569881 CACAAATCAG
** * *
32569891 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTGTAAACCAA
*
32569918 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTGTAAACCAA
** * *
32569945 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAACCAA
32569972 GGGTA
1 GGGTA
32569977 AAACGATAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.28, C:0.07, G:0.26, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAACCAA
Found at i:32569986 original size:27 final size:27
Alignment explanation
Indices: 32569955--32570246 Score: 377
Period size: 27 Copynumber: 10.8 Consensus size: 27
32569945 GGGTATTTCA
*
32569955 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
32569982 ATAATTTTGTAAATCGAGAGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
32570009 GTAATTCTGTAAATTGAAGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
32570036 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
32570063 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32570090 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
32570117 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
32570144 GTAATTCTATAAATCGAGGGTAAAGCG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32570171 GTAATTCTGTAAATCGAGGGTAAAGCG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32570198 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
32570225 GTAATTCTGTAAATGGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
32570247 CTTTGGTAAT
Statistics
Matches: 231, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 231 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:32574477 original size:50 final size:50
Alignment explanation
Indices: 32574363--32574480 Score: 202
Period size: 50 Copynumber: 2.4 Consensus size: 50
32574353 TATCCCAGAT
*
32574363 ATGGTCTTTCAT-GGATTCACACATATCGATGCCAATGTCATGTCCTAAAC
1 ATGGTCTTACATGGGA-TCACACATATCGATGCCAATGTCATGTCCTAAAC
*
32574413 ATGGTCTTACATGGGATCACACATATCGATGCTAATGTCATGTCCTAAAC
1 ATGGTCTTACATGGGATCACACATATCGATGCCAATGTCATGTCCTAAAC
32574463 ATGGTCTTACATGGGATC
1 ATGGTCTTACATGGGATC
32574481 TCATATTGAA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
50 62 0.95
51 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (50 bp):
ATGGTCTTACATGGGATCACACATATCGATGCCAATGTCATGTCCTAAAC
Found at i:32575246 original size:32 final size:32
Alignment explanation
Indices: 32575199--32575265 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
32575189 TCATATGTGT
* *
32575199 TTGATATTGAAATGGGCTAGGCCCAACTGATA
1 TTGATATTGAAATGGGCAAGGCCCAACTGAGA
* * *
32575231 TTGATTTTGAGATGGGCAAGGCCCAATTGAGA
1 TTGATATTGAAATGGGCAAGGCCCAACTGAGA
32575263 TTG
1 TTG
32575266 TGATGGGTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (32 bp):
TTGATATTGAAATGGGCAAGGCCCAACTGAGA
Found at i:32576139 original size:16 final size:16
Alignment explanation
Indices: 32576118--32576151 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32576108 TATTATGCAA
*
32576118 TAGGAAACATTGTGAT
1 TAGGAAACACTGTGAT
32576134 TAGGAAACACTGTGAT
1 TAGGAAACACTGTGAT
32576150 TA
1 TA
32576152 CTTTAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (16 bp):
TAGGAAACACTGTGAT
Found at i:32579998 original size:32 final size:32
Alignment explanation
Indices: 32579946--32580043 Score: 115
Period size: 32 Copynumber: 3.1 Consensus size: 32
32579936 TATATGGGTT
* * *
32579946 TGATATTGAAATGGGCTAGGCCCAACTGATAC
1 TGATTTTGATATGGGCTAGGCCCAATTGATAC
* * * *
32579978 TGGTTTTGATATGGGTTAGGCCCAATTAATAT
1 TGATTTTGATATGGGCTAGGCCCAATTGATAC
* *
32580010 TGATTCTGATATGGGCTAGGCCCAATTGAGAC
1 TGATTTTGATATGGGCTAGGCCCAATTGATAC
32580042 TG
1 TG
32580044 TGATAGGTTG
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (32 bp):
TGATTTTGATATGGGCTAGGCCCAATTGATAC
Found at i:32581728 original size:20 final size:18
Alignment explanation
Indices: 32581691--32581741 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
32581681 CTATAGCAAC
32581691 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
32581708 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
32581728 TTACAACTTTACAA
1 TCACAA-TTTACAA
32581742 AATAACCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:32586389 original size:46 final size:45
Alignment explanation
Indices: 32586238--32586499 Score: 172
Period size: 46 Copynumber: 5.6 Consensus size: 45
32586228 TGTGTGCTAC
* * *
32586238 TGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCAAG
1 TGTAAGACATGTCTGGGACATGCATC-GCCTCGA-GATGAGAGCCAG
* * * * *
32586284 TGTAAGACCATGTCTGGGACATGGTATCGGCATTGAAATGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATC-GCCTCGAGATGAGAGCCAG
* *
32586332 TGTAAGACATGTCTGGGACATACATCTGCCTCGTGATGTA-AGCCAG
1 TGTAAGACATGTCTGGGACATGCATC-GCCTCGAGATG-AGAGCCAG
* * * * *
32586378 TGTAAGACATGTTTGAGACATGCATCGGCTACGAGAT--GTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGCCT-CGAGATGAGAGCCAG
* ** * * *
32586422 AGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTGAATAGTCAA
1 TGTAAGA-CATGTCTGGGACAT-GCATC-GCCTCGAGATG-AGAGCCAG
*
32586471 TGTAAGACCATGTCTGTGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
32586500 ACATTCTACT
Statistics
Matches: 171, Mismatches: 33, Indels: 22
0.76 0.15 0.10
Matches are distributed among these distances:
44 10 0.06
45 15 0.09
46 59 0.35
47 32 0.19
48 24 0.14
49 31 0.18
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGCCTCGAGATGAGAGCCAG
Found at i:32591478 original size:40 final size:39
Alignment explanation
Indices: 32591422--32591520 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 39
32591412 GGATATAGCG
* * * *
32591422 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGAC-TAACCCGGATT-TAAGA
* **
32591462 GCTCGCACAAATGCCTTCGGGACTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTAACCCGGATTTAAGA
32591501 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
32591521 ATCTTAGTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.56
40 22 0.44
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.21
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAACCCGGATTTAAGA
Found at i:32598028 original size:29 final size:29
Alignment explanation
Indices: 32597995--32598059 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
32597985 GTGACGAGAT
*
32597995 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATAGA
32598024 TGGCACTAAGTGTGCATGCTGGAAATAGA
1 TGGCACTAAGTGTGCATGCTGGAAATAGA
*
32598053 CGGCACT
1 TGGCACT
32598060 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATAGA
Found at i:32602582 original size:38 final size:40
Alignment explanation
Indices: 32602445--32602588 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
32602435 GCGACTCGCT
* * * *** * *
32602445 CAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* * *
32602485 CAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* *
32602525 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GG-TCTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATGGGAAC-TAGCA
32602564 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32602589 CATCATTCGA
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
38 17 0.20
39 16 0.19
40 53 0.62
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
Found at i:32605157 original size:37 final size:38
Alignment explanation
Indices: 32605072--32605211 Score: 167
Period size: 38 Copynumber: 3.7 Consensus size: 38
32605062 GGTTTAAAGA
*
32605072 CCCGCAGGCTTTGTGCTGGTAATATATCCA-GGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATAT-CAGGGTTAAAT
*
32605110 CCTGCAGGCTTCGTGCTGGTAATATATCAGGGTT-AAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCAGGGTTAAAT
* * *
32605147 CCCGCAGGCTTCATGCTGGTATTATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCAGGGTTAAAT
* * * * *
32605185 CCTGCAGGCCTAGTACTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTAATATAT
32605212 TTAGGCCTTT
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
37 35 0.39
38 54 0.61
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCAGGGTTAAAT
Found at i:32605164 original size:75 final size:75
Alignment explanation
Indices: 32605072--32605211 Score: 199
Period size: 75 Copynumber: 1.9 Consensus size: 75
32605062 GGTTTAAAGA
** * * *
32605072 CCCGCAGGCTTTGTGCTGGTAATATATCCAGGTTAAATCCTGCAGGCTTCGTGCTGGTAATATAT
1 CCCGCAGGCTTCATGCTGGTAATATATCCAGGTTAAATCCTGCAGGCCTAGTACTGGTAATATAT
32605137 CAGGGTTAAT
66 CAGGGTTAAT
* ** *
32605147 CCCGCAGGCTTCATGCTGGTATTATATCTGGGTTAAATCCTGCAGGCCTAGTACTGGTATTATAT
1 CCCGCAGGCTTCATGCTGGTAATATATCCAGGTTAAATCCTGCAGGCCTAGTACTGGTAATATAT
32605212 TTAGGCCTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
75 56 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (75 bp):
CCCGCAGGCTTCATGCTGGTAATATATCCAGGTTAAATCCTGCAGGCCTAGTACTGGTAATATAT
CAGGGTTAAT
Found at i:32605265 original size:45 final size:44
Alignment explanation
Indices: 32605215--32605339 Score: 159
Period size: 45 Copynumber: 2.9 Consensus size: 44
32605205 ATTATATTTA
* *
32605215 GGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGAT-ACTATTCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGA-TA-TCG
*
32605260 GGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATGATATCG
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCG
* *
32605304 AGCC-TTGAGCCTAGCAGGCGA-AATGCCGGTGA-ATGA
1 GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGA
32605340 ATAAAAGTCT
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 4 0.05
42 11 0.15
43 15 0.21
44 6 0.08
45 36 0.49
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (44 bp):
GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCG
Found at i:32619673 original size:93 final size:93
Alignment explanation
Indices: 32619514--32619684 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32619504 TGATGGTTGA
* *
32619514 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
32619579 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
32619607 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
32619672 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32619685 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32619687 original size:46 final size:46
Alignment explanation
Indices: 32619518--32619689 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
32619508 GGTTGAGCAT
* * *
32619518 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
32619564 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
32619609 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
32619657 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32619690 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.56
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:32621430 original size:40 final size:41
Alignment explanation
Indices: 32621385--32621574 Score: 213
Period size: 41 Copynumber: 4.7 Consensus size: 41
32621375 CGACAAATCA
* * * * * *
32621385 GCTATATATAGCACTTAGTGTACGA-TTTAACATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* * *
32621425 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCGTCA
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
*
32621466 GCTATAAATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* * *
32621507 GCTATATATGGCACTTAGTGTGTGA-TTTGAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
* * * *
32621547 GCTATGTACGACACTTAGTGTGTGAGAT
1 GCTATATATGGCACTTAGTGTGCGAGAT
32621575 ATTAAATATT
Statistics
Matches: 127, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
40 58 0.46
41 69 0.54
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (41 bp):
GCTATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
Found at i:32624084 original size:2 final size:2
Alignment explanation
Indices: 32624077--32624104 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32624067 TGCATCATTC
32624077 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32624105 TACCTTAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32625724 original size:43 final size:42
Alignment explanation
Indices: 32625610--32625725 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 42
32625600 AAATCGTACA
*
32625610 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
32625653 ATGCCACTGTCCCAGACAAGGTCATACACG-AATCACATATATG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
*
32625696 ATGCCGATGTCCCAGACATGATCTTACACG
1 ATGCC-ATGTCCCAGACATGGTCTTACACG
32625726 CAGTCATATA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
42 11 0.17
43 51 0.81
44 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:32629273 original size:28 final size:28
Alignment explanation
Indices: 32629233--32629379 Score: 224
Period size: 28 Copynumber: 5.3 Consensus size: 28
32629223 TGGGAAGTAG
32629233 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
32629261 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
32629289 TTGGTCCTAATGGGCCATATGAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
32629317 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
32629345 -TGGGCCTGATGGACCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
32629372 TTGGGCCT
1 TTGGGCCT
32629380 AAAGGGGCCA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 23 0.21
28 85 0.79
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:32629327 original size:84 final size:84
Alignment explanation
Indices: 32629233--32629397 Score: 251
Period size: 84 Copynumber: 2.0 Consensus size: 84
32629223 TGGGAAGTAG
* * * *
32629233 TTGGGCCTGATGGGCCATATGAATGTGATTGGGCCTGATGGGCCATATGAATGTGATTGGTCCT-
1 TTGGGCCTGATGGGCCATATGAATGTGA-TGGGCCTGATGGACCATATGAACGAGATTGGGCCTA
* *
32629297 AATGGGCCATATGAATATGA
65 AAGGGGCCAAATGAATATGA
*
32629317 TTGGGCCTGATGGGCCATATGAATGTGATGGGCCTGATGGACCATGTGAACGAGATTGGGCCTAA
1 TTGGGCCTGATGGGCCATATGAATGTGATGGGCCTGATGGACCATATGAACGAGATTGGGCCTAA
32629382 AGGGGCCAAATGAATA
66 AGGGGCCAAATGAATA
32629398 AGTGTGGATC
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
83 30 0.41
84 43 0.59
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.26
Consensus pattern (84 bp):
TTGGGCCTGATGGGCCATATGAATGTGATGGGCCTGATGGACCATATGAACGAGATTGGGCCTAA
AGGGGCCAAATGAATATGA
Found at i:32629726 original size:27 final size:27
Alignment explanation
Indices: 32629696--32630058 Score: 291
Period size: 27 Copynumber: 13.6 Consensus size: 27
32629686 TAAAAAATAG
32629696 AAATTACCGAAATACCCCTAGTTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
*
32629723 AAATTACTGAAATACCCCTAGTTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* * * *
32629750 AAATTACTGAAATACCCTTGGTTTATA
1 AAATTACCGAAATACCCCTAGTTTGTA
**
32629777 AAATTACCGAAATA-CCCTCAGTTTACA
1 AAATTACCGAAATACCCCT-AGTTTGTA
* *
32629804 AAA-TACTGAAATA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCTAG-TTTGTA
** * *
32629830 AAATTATTGAAATA-CCCTCGATTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* *
32629856 AAATTACTGAAATA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCTAG-TTTGTA
* * *
32629883 AAATTATCGAAATACCTCGA-TTATG--
1 AAATTACCGAAATACCCCTAGTT-TGTA
* * *
32629908 AAATTACTGAAATACCTCGA-TTTGTA
1 AAATTACCGAAATACCCCTAGTTTGTA
* * *
32629934 AAATTACCAAAATACCCC-CGATTTGTG
1 AAATTACCGAAATACCCCTAG-TTTGTA
* * *
32629961 AAATTACCGAAACA-CCCTCGATTTGTG
1 AAATTACCGAAATACCCCTAG-TTTGTA
*
32629988 AAATTACCGAAACA-CCCTAGATTTGTA
1 AAATTACCGAAATACCCCTAG-TTTGTA
* * * *
32630015 AAATTATCGAAATACCCCCAATTTGAA
1 AAATTACCGAAATACCCCTAGTTTGTA
32630042 AAATTACCGAAATACCC
1 AAATTACCGAAATACCC
32630059 TCGATTGTGA
Statistics
Matches: 286, Mismatches: 38, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
24 2 0.01
25 21 0.07
26 67 0.23
27 190 0.66
28 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTAGTTTGTA
Found at i:32630039 original size:54 final size:54
Alignment explanation
Indices: 32629696--32630064 Score: 416
Period size: 54 Copynumber: 6.9 Consensus size: 54
32629686 TAAAAAATAG
* * * *
32629696 AAATTACCGAAATACCC-CTAGTTTGTAAAATTACTGAAATACCC-CTAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTAAAATTACCGAAATACCCTCGA-TTTGTA
* * * *
32629750 AAATTACTGAAATACCCTTGGTTTATAAAATTACCGAAATACCCTC-AGTT-TA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* **
32629802 CAAAATACTGAAATACCCTCGATTTGTAAAATTATTGAAATACCCTCGA-TTGTA
1 -AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
*
32629856 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATA-CCTCGATTATG--
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATT-TGTA
* * *
32629908 AAATTACTGAAATA-CCTCGATTTGTAAAATTACCAAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * *
32629961 AAATTACCGAAACACCCTCGATTTGTGAAATTACCGAAACACCCTAGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
32630015 AAATTA-TCGAAATACCCCCAATTTGAAAAATTACCGAAATACCCTCGATT
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATT
32630065 GTGAACATGC
Statistics
Matches: 269, Mismatches: 34, Indels: 24
0.82 0.10 0.07
Matches are distributed among these distances:
51 26 0.10
52 29 0.11
53 96 0.36
54 117 0.43
55 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:32630182 original size:34 final size:34
Alignment explanation
Indices: 32630134--32630198 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
32630124 AGACTTCAAA
32630134 TTTAATTGCTTTGATTATGAATGTATGACTGTGT
1 TTTAATTGCTTTGATTATGAATGTATGACTGTGT
* **
32630168 TTTAATTGAC-TTGATTGTGGTTGTATGACTG
1 TTTAATTG-CTTTGATTATGAATGTATGACTG
32630199 ATATGCTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.22, C:0.06, G:0.23, T:0.49
Consensus pattern (34 bp):
TTTAATTGCTTTGATTATGAATGTATGACTGTGT
Found at i:32635367 original size:27 final size:28
Alignment explanation
Indices: 32635337--32635406 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
32635327 ATAGTGAATC
*
32635337 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
32635364 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
32635392 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32635407 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:32635478 original size:42 final size:42
Alignment explanation
Indices: 32635414--32635520 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
32635404 GCTGTACAAT
* *
32635414 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32635456 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32635498 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
32635521 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:32642598 original size:27 final size:28
Alignment explanation
Indices: 32642568--32642637 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
32642558 ATAGTGAATC
*
32642568 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
32642595 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
32642623 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32642638 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:32642709 original size:42 final size:42
Alignment explanation
Indices: 32642645--32642751 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
32642635 GCTGTACAAT
* *
32642645 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32642687 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
32642729 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
32642752 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:32645857 original size:15 final size:15
Alignment explanation
Indices: 32645837--32645868 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
32645827 AAGAGCCCTT
32645837 AGTCGGCCACCTTGG
1 AGTCGGCCACCTTGG
32645852 AGTCGGCCACCTTGG
1 AGTCGGCCACCTTGG
32645867 AG
1 AG
32645869 AGCCATCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (15 bp):
AGTCGGCCACCTTGG
Found at i:32656170 original size:27 final size:27
Alignment explanation
Indices: 32656129--32656240 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
32656119 AGGAAGCATC
*
32656129 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
32656156 CTAGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
* *
32656183 TTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
32656211 CTGGTGACTCTGTCAC-ATTACCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
32656237 CTGG
1 CTGG
32656241 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.11
27 46 0.65
28 16 0.23
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:32657227 original size:16 final size:16
Alignment explanation
Indices: 32657206--32657236 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32657196 TGGGTTTATA
*
32657206 AAAAACAAAGATTTTC
1 AAAAACAAAAATTTTC
32657222 AAAAACAAAAATTTT
1 AAAAACAAAAATTTT
32657237 ATAAAGATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAAACAAAAATTTTC
Found at i:32663546 original size:16 final size:15
Alignment explanation
Indices: 32663520--32663549 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32663510 ACTAGATCGG
32663520 CAAAAGCCGAAAAGT
1 CAAAAGCCGAAAAGT
32663535 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
32663550 CTGATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.07
Consensus pattern (15 bp):
CAAAAGCCGAAAAGT
Found at i:32663981 original size:27 final size:27
Alignment explanation
Indices: 32663941--32664028 Score: 99
Period size: 27 Copynumber: 3.2 Consensus size: 27
32663931 AGGAAGCGTC
*
32663941 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
32663968 CTGGTGGCTCTGCCA-TATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
* *
32663995 CTGGTAGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
32664023 CTGGTG
1 CTGGTG
32664029 ACTTTGTCAC
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 3 0.06
27 39 0.76
28 8 0.16
29 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:32667790 original size:43 final size:43
Alignment explanation
Indices: 32667634--32667789 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 43
32667624 CATCCATTAT
* * * * * ** *
32667634 GAACTCGGACCATTCAACGAGCTTGGATGCTCACATCTAAAAT
1 GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
* * *
32667677 GAACTCAGACCACTCAAGGAGCTCGGATGC-TACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
* * * *
32667719 GAACTTGGACCACTCAACAAGTTCGAATTCTTACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
* *
32667762 GAACTCGGACCATTCAATGAGCTCGAAT
1 GAACTCGGACCACTCAACGAGCTCGAAT
32667790 TTCTTAATTC
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 30 0.33
43 61 0.67
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
GAACTCGGACCACTCAACGAGCTCGAATGCTTACATATATCAC
Found at i:32697780 original size:37 final size:38
Alignment explanation
Indices: 32697690--32697910 Score: 279
Period size: 39 Copynumber: 5.8 Consensus size: 38
32697680 CGGGATACTG
32697690 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
1 GGATACATTTCCAGCACGAAGCCTGC-GGACTTTAGCCC
32697729 GGATACATTTCCAGCACGAAGCCTGCGGACTTTAGCCC
1 GGATACATTTCCAGCACGAAGCCTGCGGACTTTAGCCC
32697767 -GATACATTTCCAGCACGAAGCCTG-GGACTTTAGCCC
1 GGATACATTTCCAGCACGAAGCCTGCGGACTTTAGCCC
* * *
32697803 GGATACATTTCCAGCACGAAGCCTGCGGACCCTAAGTCC
1 GGATACATTTCCAGCACGAAGCCTGCGGA-CTTTAGCCC
* * * * *
32697842 GGATATAATTCCAGCAC-ATAGCCTGCGGACCCTAAGTCC
1 GGATACATTTCCAGCACGA-AGCCTGCGGA-CTTTAGCCC
* *
32697881 GGATATAATTCCAGCAC-ATAGCCTGCGGAC
1 GGATACATTTCCAGCACGA-AGCCTGCGGAC
32697911 CCTAAGTCCG
Statistics
Matches: 173, Mismatches: 5, Indels: 9
0.93 0.03 0.05
Matches are distributed among these distances:
36 12 0.07
37 48 0.28
38 17 0.10
39 96 0.55
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (38 bp):
GGATACATTTCCAGCACGAAGCCTGCGGACTTTAGCCC
Found at i:32697797 original size:74 final size:75
Alignment explanation
Indices: 32697691--32697832 Score: 268
Period size: 74 Copynumber: 1.9 Consensus size: 75
32697681 GGGATACTGG
32697691 GATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCG
1 GATACATTTCCAGCACGAAGCCT-CGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCG
32697756 GACTTTAGCCC
65 GACTTTAGCCC
32697767 GATACATTTCCAGCACGAAGCCT-GGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
1 GATACATTTCCAGCACGAAGCCTCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
32697831 AC
66 AC
32697833 CCTAAGTCCG
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
74 43 0.65
76 23 0.35
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (75 bp):
GATACATTTCCAGCACGAAGCCTCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
ACTTTAGCCC
Found at i:32697911 original size:39 final size:39
Alignment explanation
Indices: 32697801--32697924 Score: 214
Period size: 39 Copynumber: 3.2 Consensus size: 39
32697791 GGACTTTAGC
* *
32697801 CCGGATACATTTCCAGCACGA-AGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCAC-ATAGCCTGCGGACCCTAAGT
32697840 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
32697879 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
32697918 CCGGATA
1 CCGGATA
32697925 CACATCAAAT
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
38 1 0.01
39 81 0.99
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.19
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:32702781 original size:4 final size:4
Alignment explanation
Indices: 32702772--32702810 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
32702762 TAGTTCCGTT
32702772 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
32702811 TTTTTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:32705658 original size:38 final size:39
Alignment explanation
Indices: 32705578--32705700 Score: 205
Period size: 39 Copynumber: 3.2 Consensus size: 39
32705568 GGACTTTGGC
* *
32705578 CCGGATACATTTCCAGCACGA-AGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCAC-ATAGCCTGCGGACCCTAAGT
32705617 CCGGATATAATTCCAGCACATAGCCTGC-GACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
32705655 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
32705694 CCGGATA
1 CCGGATA
32705701 CACATCAAAT
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
38 39 0.49
39 41 0.51
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:32708717 original size:31 final size:31
Alignment explanation
Indices: 32708674--32708788 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
32708664 GCAATCTCAA
*
32708674 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTCCATTATT
* *
32708704 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTCCATTATT
*
32708735 CATATCATTGGGCCGAAGCCTTTCCATTATT
1 CATATCACTGGGCCGAAGCCTTTCCATTATT
32708766 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
32708789 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 4 0.05
31 74 0.95
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATTATT
Found at i:32709091 original size:11 final size:11
Alignment explanation
Indices: 32709075--32709123 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
32709065 TATATGAATT
32709075 TATCATGTGCA
1 TATCATGTGCA
*
32709086 TATCA--TACA
1 TATCATGTGCA
32709095 TATCATGTGCA
1 TATCATGTGCA
32709106 TATCATGT-CA
1 TATCATGTGCA
*
32709116 AATCATGT
1 TATCATGT
32709124 ATATCAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:32711706 original size:41 final size:40
Alignment explanation
Indices: 32711514--32711708 Score: 189
Period size: 40 Copynumber: 4.8 Consensus size: 40
32711504 GGATATAGCG
* * * * *
32711514 ACTCGCTCAAAAGCCTTTGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * * * *
32711554 GCTCGCACAAATGCCTCCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
32711594 ACTCGCACCAATGCCTTC-GGATCTTAGTCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
32711634 ACTCGCACAAATGCCTTCGGGAATT-GACCCGGATTTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGTA
* *
32711674 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAT
32711709 ACCATTCGAA
Statistics
Matches: 125, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
39 4 0.03
40 88 0.70
41 32 0.26
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:32715681 original size:93 final size:93
Alignment explanation
Indices: 32715568--32715739 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
32715558 CGCCCATAAG
* *
32715568 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32715633 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
32715661 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32715726 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
32715740 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:32715736 original size:46 final size:46
Alignment explanation
Indices: 32715561--32715736 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
32715551 TGTAACCCGC
* *
32715561 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
32715607 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
32715657 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
32715700 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
32715737 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:32717457 original size:64 final size:64
Alignment explanation
Indices: 32717376--32717559 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
32717366 ATACATCATG
* * *
32717376 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
32717440 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGATAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
32717505 AA
63 AA
* * * *
32717507 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATAT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
32717560 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 21 0.22
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32725238 original size:12 final size:12
Alignment explanation
Indices: 32725221--32725246 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32725211 AACATCATCA
32725221 AAATAAATGTCC
1 AAATAAATGTCC
32725233 AAATAAATGTCC
1 AAATAAATGTCC
32725245 AA
1 AA
32725247 TGTCCATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATAAATGTCC
Found at i:32731947 original size:24 final size:24
Alignment explanation
Indices: 32731920--32731967 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
32731910 TAAAGAAAAA
32731920 AGAAAACATGCCACAAGAGCAGAC
1 AGAAAACATGCCACAAGAGCAGAC
*** *
32731944 AGAAAGTGTGCCACAAGAGTAGAC
1 AGAAAACATGCCACAAGAGCAGAC
32731968 TAAAAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.21, G:0.25, T:0.08
Consensus pattern (24 bp):
AGAAAACATGCCACAAGAGCAGAC
Found at i:32737623 original size:2 final size:2
Alignment explanation
Indices: 32737618--32737657 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
32737608 GATTTTTTTA
*
32737618 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32737658 CAAATCAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:32738007 original size:19 final size:19
Alignment explanation
Indices: 32737983--32738028 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
32737973 TGTTAAATAC
32737983 AATTTGATG-TATATGATTT
1 AATTTGATGTTATATGA-TT
*
32738002 AATTTG-TGTTCTATGATT
1 AATTTGATGTTATATGATT
32738020 AATTTGATG
1 AATTTGATG
32738029 AAAGTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.52
Consensus pattern (19 bp):
AATTTGATGTTATATGATT
Found at i:32738561 original size:2 final size:2
Alignment explanation
Indices: 32738554--32738589 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
32738544 TTAACGTTGA
32738554 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32738590 TTCAATATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32742465 original size:14 final size:16
Alignment explanation
Indices: 32742448--32742481 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
32742438 AATAATATAT
32742448 AATTAT-ATTAA-AAA
1 AATTATAATTAACAAA
32742462 AATTATAATTAACAAA
1 AATTATAATTAACAAA
32742478 AATT
1 AATT
32742482 CTTTATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 7 0.39
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
AATTATAATTAACAAA
Found at i:32744910 original size:18 final size:18
Alignment explanation
Indices: 32744887--32744923 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
32744877 AATATCATTT
32744887 ATGGTTGTATGCAAAATA
1 ATGGTTGTATGCAAAATA
32744905 ATGGTTGTATGCAAAATA
1 ATGGTTGTATGCAAAATA
32744923 A
1 A
32744924 CCGGTAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (18 bp):
ATGGTTGTATGCAAAATA
Found at i:32751888 original size:28 final size:28
Alignment explanation
Indices: 32751819--32751919 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
32751809 GACAAGATTG
* * * *
32751819 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
32751849 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
32751877 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
32751906 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32751920 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:32751913 original size:29 final size:28
Alignment explanation
Indices: 32751848--32751919 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
32751838 AAAATTGTAC
*
32751848 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
32751876 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
32751905 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32751920 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:32753527 original size:27 final size:28
Alignment explanation
Indices: 32753470--32753537 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
32753460 ACTTGTACAA
32753470 CACTAAGTGTGCGAGTTTGATCATATAG
1 CACTAAGTGTGCGAGTTTGATCATATAG
* *
32753498 CACTAAGTGTGCGAG-TTGATTATATCG
1 CACTAAGTGTGCGAGTTTGATCATATAG
32753525 CACTAAGTGTGCG
1 CACTAAGTGTGCG
32753538 GACTCACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATCATATAG
Found at i:32753548 original size:27 final size:27
Alignment explanation
Indices: 32753470--32753549 Score: 65
Period size: 27 Copynumber: 2.9 Consensus size: 27
32753460 ACTTGTACAA
* *
32753470 CACTAAGTGTGCGAGTTTGA-TCATATAG
1 CACTAAGTGTGCGAG-CTCACT-ATATAG
* * * *
32753498 CACTAAGTGTGCGAGTTGATTATATCG
1 CACTAAGTGTGCGAGCTCACTATATAG
32753525 CACTAAGTGTGCG-GACTCACTATAT
1 CACTAAGTGTGCGAG-CTCACTATAT
32753550 GCTTTTGAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.63
28 16 0.35
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (27 bp):
CACTAAGTGTGCGAGCTCACTATATAG
Found at i:32761550 original size:27 final size:28
Alignment explanation
Indices: 32761494--32761563 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
32761484 AAACTTGTAC
32761494 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
32761522 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
32761549 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32761564 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:32761574 original size:27 final size:27
Alignment explanation
Indices: 32761494--32761575 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
32761484 AAACTTGTAC
* *
32761494 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
32761522 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
32761549 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
32761576 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:32763569 original size:43 final size:43
Alignment explanation
Indices: 32763522--32763608 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
32763512 AGGTTAAATA
* *
32763522 CAACAACCCATGTTTATCACCTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCACCTCCTCTTTTTAAATTCTTTTTT
* ** * *
32763565 CAACAACCTAAGATTATCTTCTCCTTTTTTTAAATTTTTTTTT
1 CAACAACCCAAGATTATCACCTCCTCTTTTTAAATTCTTTTTT
32763608 C
1 C
32763609 TAGGATAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.02, T:0.49
Consensus pattern (43 bp):
CAACAACCCAAGATTATCACCTCCTCTTTTTAAATTCTTTTTT
Found at i:32763637 original size:56 final size:57
Alignment explanation
Indices: 32763565--32763711 Score: 199
Period size: 57 Copynumber: 2.6 Consensus size: 57
32763555 ATTCTTTTTT
* *
32763565 CAACAACCTAAGATTATCTTCTCCT-TTTTTTAAATTTTTTTTTCTAGGATAAAAAC
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTTAAATTTTCTTTTCTAGGATAAAAAC
* * **
32763621 CAACAACCCAATATTATCTTTTCCTCTTTTAAAAATTTTCTTTTCTAGGATAAAAAC
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTTAAATTTTCTTTTCTAGGATAAAAAC
* *
32763678 CAAC-ATCCAAGGATTATATTCTCCTCTTTTTTAA
1 CAACAACCCAA-GATTATCTTCTCCTCTTTTTTAA
32763712 GCAGAATTTT
Statistics
Matches: 77, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
56 27 0.35
57 50 0.65
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (57 bp):
CAACAACCCAAGATTATCTTCTCCTCTTTTTTAAATTTTCTTTTCTAGGATAAAAAC
Found at i:32768017 original size:27 final size:27
Alignment explanation
Indices: 32767957--32768009 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
32767947 TTAGCGTATT
* *
32767957 GACCATTTGGATTATTATTGAGACCAA
1 GACCATTTGGATTATCACTGAGACCAA
*
32767984 GACCATTTGGATTATCACTGCGACCA
1 GACCATTTGGATTATCACTGAGACCA
32768010 TGATCATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (27 bp):
GACCATTTGGATTATCACTGAGACCAA
Found at i:32768338 original size:21 final size:22
Alignment explanation
Indices: 32768267--32768324 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
32768257 TACAGGGCTC
*
32768267 ACACGCCCGTGCGATCCAAGGG
1 ACACGCCCGTGTGATCCAAGGG
32768289 ACACGCCCGTGTGATCCAAGGG
1 ACACGCCCGTGTGATCCAAGGG
32768311 ACACGCCCGTGTGA
1 ACACGCCCGTGTGA
32768325 CTCTAGGACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.22, C:0.34, G:0.31, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGATCCAAGGG
Found at i:32772572 original size:42 final size:43
Alignment explanation
Indices: 32772526--32772628 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 43
32772516 TGTAAGGACA
* * * * *
32772526 TGTCTGGGACATTGGTATCG-TATTTGATTTCGTGTAAGACCT
1 TGTCTGGGACATTGGCATCGATACTTGATTACATGTAAGACCG
* *
32772568 TGTCTGGGATAGTGGCATCGATACTTGATTACATGTAAGACCG
1 TGTCTGGGACATTGGCATCGATACTTGATTACATGTAAGACCG
* *
32772611 CGTCTGGGACGTTGGCAT
1 TGTCTGGGACATTGGCAT
32772629 TGTACAAGTT
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 17 0.35
43 32 0.65
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (43 bp):
TGTCTGGGACATTGGCATCGATACTTGATTACATGTAAGACCG
Found at i:32776640 original size:29 final size:29
Alignment explanation
Indices: 32776606--32776680 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
32776596 TACTCGATTT
*
32776606 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
32776635 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
32776664 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
32776681 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:32776697 original size:29 final size:29
Alignment explanation
Indices: 32776664--32776737 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
32776654 CCTTCGAGCT
32776664 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32776693 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32776722 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32776738 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32787156 original size:40 final size:40
Alignment explanation
Indices: 32787048--32787257 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
32787038 CGGGATTTAA
* * * * *
32787048 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
32787088 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32787128 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32787168 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32787208 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32787248 CCGGATATAT
1 CCGGATATAT
32787258 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:32788933 original size:39 final size:39
Alignment explanation
Indices: 32788886--32789024 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 39
32788876 GGACTAGGAT
32788886 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTAATAAA-CCGGGCTAAGTC
* * *
32788925 CCGAAGGCATTTGTGCAAGTTAATAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAA-CCGGGCTAAGTC
* * **
32788965 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCGGGCTAAGTC
* *
32789005 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
32789025 CGTTATATCC
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 34 0.40
40 49 0.58
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCGGGCTAAGTC
Found at i:32790493 original size:40 final size:40
Alignment explanation
Indices: 32790418--32790636 Score: 331
Period size: 40 Copynumber: 5.5 Consensus size: 40
32790408 AACCCAAGTA
*
32790418 CCTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
32790457 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
32790497 CCTTCGGGACTTAGCCCGCATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
32790537 CCTTCGGGACTTAGCCCTGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
32790577 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATC--ATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAAATG
32790616 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
32790637 GTCATCCGAA
Statistics
Matches: 167, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 37 0.22
40 128 0.77
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:32793535 original size:27 final size:27
Alignment explanation
Indices: 32793505--32793899 Score: 475
Period size: 27 Copynumber: 14.6 Consensus size: 27
32793495 AATCACATAT
* * *
32793505 CTGTAGGTTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
32793532 CTGTAAGGTAGAATTACCGAAGTACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32793559 CTATAGGGTAGAACTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32793586 TTGTAAGGTAGAATTACCGAAATACCT
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32793613 CTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
32793640 CTGTAGGGTAGAATTACTGAAATATCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32793667 CTATAAGGTAGAATTGCCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32793694 CTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* **
32793721 CTGTAGGGTAAAATTATTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
32793748 CTGTAAGGTAGAATTATCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* **
32793775 CTATAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32793802 CTATAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * **
32793829 TTGTAGGGTAGAAATATTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32793856 CTGTAGGGTAGAATTACCGAGATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32793883 TTGTGGGGTAAAATTAC
1 CTGTAGGGTAGAATTAC
32793900 TATTTTGCCC
Statistics
Matches: 313, Mismatches: 55, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 313 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACCGAAATACCC
Found at i:32794533 original size:27 final size:26
Alignment explanation
Indices: 32794489--32794540 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32794479 CTCGTTGCAA
*
32794489 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
32794516 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
32794541 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:32795571 original size:27 final size:27
Alignment explanation
Indices: 32795541--32795935 Score: 475
Period size: 27 Copynumber: 14.6 Consensus size: 27
32795531 AATCACATAT
* * *
32795541 CTGTAGGTTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
32795568 CTGTAAGGTAGAATTACCGAAGTACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32795595 CTATAGGGTAGAACTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32795622 TTGTAAGGTAGAATTACCGAAATACCT
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32795649 CTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
32795676 CTGTAGGGTAGAATTACTGAAATATCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32795703 CTATAAGGTAGAATTGCCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32795730 CTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* **
32795757 CTGTAGGGTAAAATTATTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
32795784 CTGTAAGGTAGAATTATCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* **
32795811 CTATAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32795838 CTATAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * **
32795865 TTGTAGGGTAGAAATATTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
32795892 CTGTAGGGTAGAATTACCGAGATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
32795919 TTGTGGGGTAAAATTAC
1 CTGTAGGGTAGAATTAC
32795936 TATTTTGCCC
Statistics
Matches: 313, Mismatches: 55, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 313 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACCGAAATACCC
Found at i:32796569 original size:27 final size:26
Alignment explanation
Indices: 32796525--32796576 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32796515 CTCGTTGCAA
*
32796525 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
32796552 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
32796577 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:32799415 original size:48 final size:48
Alignment explanation
Indices: 32799345--32799726 Score: 369
Period size: 48 Copynumber: 7.9 Consensus size: 48
32799335 ATACTAGGGT
* * * * * *
32799345 TATGTGAGCCAGTATAAGACCATGTTTGGAACATGGAATCGGCATTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
* * *
32799393 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
* * * * *
32799441 TAT-ATGAGCCAATATAAGACCATGTTTGGAACATGGCATCGACATTGA
1 TATGA-GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
* * *
32799489 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
* * * * * *
32799537 TATGTGATCTAGTGTAAGACCATGTCTGGGACATGGCAT-TGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
* * ** *
32799584 TATGTGAGCTAGTGTAAGACCATGTCT-AAGACATGAAATCGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGA-ACATGGCATCGGCATTGA
* * * **
32799632 TAGGTAG-GCTAGTGTAAGGCCATGTTTGGAACATGGCATCGGCACCGATA
1 TATG-AGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTG--A
*
32799682 TATGAGAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCAT
1 TATGAGAGCTAGTGTAAGACCATGTCT-GGAACATGGCATCGGCAT
32799727 CTTACCCTTT
Statistics
Matches: 274, Mismatches: 50, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
47 39 0.14
48 193 0.70
49 5 0.02
50 35 0.13
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
Found at i:32799513 original size:96 final size:96
Alignment explanation
Indices: 32799349--32799724 Score: 452
Period size: 96 Copynumber: 3.9 Consensus size: 96
32799339 TAGGGTTATG
* **
32799349 TGAGCCAGTATAAGACCATGTTTGGAACATGGAATCGGCATTAATATGAGAGCTAGTGTAAGACC
1 TGAGCCAGTATAAGACCATGTTTGGAACATGGCATCGGCATCGATATGAGAGCTAGTGTAAGACC
* *
32799414 ATGTCTGGGACATGGCATCGGCCTCGATATA
66 ATGTCTAGGACATGGCATCGGCCTTGATATA
* * *
32799445 TGAGCCAATATAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACC
1 TGAGCCAGTATAAGACCATGTTTGGAACATGGCATCGGCATCGATATGAGAGCTAGTGTAAGACC
* * *
32799510 ATGTCTGGGACATGGCATCGACCTTGATATG
66 ATGTCTAGGACATGGCATCGGCCTTGATATA
* * * * * * * *
32799541 TGATCTAGTGTAAGACCATGTCTGGGACATGGCAT-TGCCTCGATATGTGAGCTAGTGTAAGACC
1 TGAGCCAGTATAAGACCATGTTTGGAACATGGCATCGGCATCGATATGAGAGCTAGTGTAAGACC
* **
32799605 ATGTCTAAGACATGAAATCGGCCTTGATAGGTA
66 ATGTCTAGGACATGGCATCGGCCTTGATA--TA
* * * * *
32799638 -G-GCTAGTGTAAGGCCATGTTTGGAACATGGCATCGGCACCGATATATGAGAGCCAGTGTAAGA
1 TGAGCCAGTATAAGACCATGTTTGGAACATGGCATCGGCATCG--ATATGAGAGCTAGTGTAAGA
32799701 CCATGTCTAGGACATGGCATCGGC
64 CCATGTCTAGGACATGGCATCGGC
32799725 ATCTTACCCT
Statistics
Matches: 239, Mismatches: 36, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
95 76 0.32
96 123 0.51
97 1 0.00
98 39 0.16
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (96 bp):
TGAGCCAGTATAAGACCATGTTTGGAACATGGCATCGGCATCGATATGAGAGCTAGTGTAAGACC
ATGTCTAGGACATGGCATCGGCCTTGATATA
Found at i:32805092 original size:28 final size:27
Alignment explanation
Indices: 32805025--32805095 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 27
32805015 TTGGACTTGC
*
32805025 TTGTTTGTTGTTTCTTTTTTTATTATTA
1 TTGTTTGTT-TTTCTTTTCTTATTATTA
* * * *
32805053 TTATTTACTTTTTCTTTTCTTATGTGTTT
1 TTGTTT-GTTTTTCTTTTCTTAT-TATTA
32805082 TTGTTTGTTTTTCT
1 TTGTTTGTTTTTCT
32805096 GTACAGCCAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
28 24 0.71
29 10 0.29
ACGTcount: A:0.08, C:0.07, G:0.10, T:0.75
Consensus pattern (27 bp):
TTGTTTGTTTTTCTTTTCTTATTATTA
Found at i:32810151 original size:68 final size:70
Alignment explanation
Indices: 32810079--32810276 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
32810069 ACACCCTGTA
* * * *
32810079 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
32810141 ATAAAT
65 ATAAAT
*
32810147 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
32810212 ATAAAT
65 ATAAAT
*
32810218 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
32810277 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:32810190 original size:41 final size:41
Alignment explanation
Indices: 32810145--32810262 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32810135 TGAAAGATAA
32810145 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32810186 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32810216 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32810257 ATGTAG
1 ATGTAG
32810263 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32810202 original size:71 final size:71
Alignment explanation
Indices: 32810113--32810276 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32810103 GAGATGTATC
32810113 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32810178 AGGACA
66 AGGACA
32810184 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32810249 AGGACA
66 AGGACA
32810255 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32810277 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32817639 original size:68 final size:70
Alignment explanation
Indices: 32817567--32817764 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
32817557 ACACCCTGTA
* * * *
32817567 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
32817629 ATAAAT
65 ATAAAT
*
32817635 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
32817700 ATAAAT
65 ATAAAT
*
32817706 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
32817765 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:32817678 original size:41 final size:41
Alignment explanation
Indices: 32817633--32817750 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32817623 TGAAAGATAA
32817633 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32817674 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32817704 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32817745 ATGTAG
1 ATGTAG
32817751 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32817690 original size:71 final size:71
Alignment explanation
Indices: 32817601--32817764 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32817591 GAGATGTATC
32817601 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32817666 AGGACA
66 AGGACA
32817672 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32817737 AGGACA
66 AGGACA
32817743 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32817765 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32822811 original size:42 final size:41
Alignment explanation
Indices: 32822775--32822921 Score: 195
Period size: 42 Copynumber: 3.3 Consensus size: 41
32822765 CATAGTTCAA
*
32822775 CTATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACAT-ATGATGCCATAGCCCAG
32822817 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATAT-GATGCCATAGCCCAG
32822859 CTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT---AT-TCACATAT-GATGCCATAGCCCAG
32822908 CTATGGTCTTACAC
1 CTATGGTCTTACAC
32822922 GAATCACATA
Statistics
Matches: 96, Mismatches: 1, Indels: 9
0.91 0.01 0.08
Matches are distributed among these distances:
41 2 0.02
42 52 0.54
45 2 0.02
48 2 0.02
49 38 0.40
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (41 bp):
CTATGGTCTTACACATATTCACATATGATGCCATAGCCCAG
Found at i:32822901 original size:49 final size:48
Alignment explanation
Indices: 32822828--32822964 Score: 206
Period size: 49 Copynumber: 2.9 Consensus size: 48
32822818 TATGGTCTTA
32822828 CACATATTCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
32822878 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * *
32822926 CACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
32822965 TACAGTAGCC
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
46 24 0.29
47 1 0.01
48 13 0.16
49 39 0.47
50 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:32822960 original size:46 final size:47
Alignment explanation
Indices: 32822843--32823011 Score: 157
Period size: 47 Copynumber: 3.6 Consensus size: 47
32822833 ATTCACATAT
* * * *
32822843 CGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCAC-ATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACAG-AAGC-CTATATCAC--AC
* * * *
32822892 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCAC-ATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGC-CTATATCACAC
* * *
32822938 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCCTATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCCTATATCACAC
*
32822985 CAATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
32823012 TACGGAAACA
Statistics
Matches: 107, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
46 28 0.26
47 36 0.34
48 12 0.11
49 31 0.29
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCCTATATCACAC
Found at i:32828649 original size:65 final size:65
Alignment explanation
Indices: 32828545--32828675 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
32828535 AGTCCCATGC
* * *
32828545 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGACAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
32828610 ATCAGACAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
1 ATCAGACAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
32828675 A
1 A
32828676 ACCCTAGGGG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGACAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAAGTCAACCTT
Found at i:32828734 original size:27 final size:26
Alignment explanation
Indices: 32828678--32828734 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
32828668 CAACCTTAAC
* * *
32828678 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
32828704 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
32828731 CCTA
1 CCTA
32828735 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:32831366 original size:34 final size:35
Alignment explanation
Indices: 32831314--32831379 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
32831304 CTAGCTACAG
*
32831314 TCTCAGTCTTCTAAAGTTTTCAGT-TTTCCCTACTA
1 TCTCAGTCTTCTAAAG-TTTCAGTATTACCCTACTA
*
32831349 TCTCAGT-TTCTACAGTTTCAGTATTACCCTA
1 TCTCAGTCTTCTAAAGTTTCAGTATTACCCTA
32831380 ACTACAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 7 0.25
34 14 0.50
35 7 0.25
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (35 bp):
TCTCAGTCTTCTAAAGTTTCAGTATTACCCTACTA
Found at i:32832911 original size:27 final size:26
Alignment explanation
Indices: 32832857--32832911 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
32832847 ACCTTAACCT
* * *
32832857 TAGGGGTATATCAGTAATTTTGCTCC
1 TAGGGGTAAATCAGTAATTTTCCACC
*
32832883 TAGGGGTAAATCTGTAAATTTTCCACC
1 TAGGGGTAAATCAGT-AATTTTCCACC
32832910 TA
1 TA
32832912 TAAAGGTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (26 bp):
TAGGGGTAAATCAGTAATTTTCCACC
Found at i:32833185 original size:13 final size:13
Alignment explanation
Indices: 32833158--32833201 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
32833148 TACTTATTGC
*
32833158 TTATTTTTTTATA
1 TTATTATTTTATA
32833171 TTATATATTTT-TA
1 TTAT-TATTTTATA
32833184 TTATTATTTTAT-
1 TTATTATTTTATA
32833196 TTATTA
1 TTATTA
32833202 ACCCGTATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.43
13 11 0.39
14 5 0.18
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTATTTTATA
Found at i:32833198 original size:15 final size:14
Alignment explanation
Indices: 32833158--32833201 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
32833148 TACTTATTGC
32833158 TTATTTTTTTA-TA
1 TTATTTTTTTATTA
32833171 TTATATATTTTTATTA
1 TTAT-T-TTTTTATTA
32833187 TTATTTTATTTATTA
1 TTATTTT-TTTATTA
32833202 ACCCGTATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 4 0.15
14 3 0.11
15 14 0.52
16 6 0.22
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTTTTTTATTA
Found at i:32835745 original size:27 final size:28
Alignment explanation
Indices: 32835689--32835758 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
32835679 AAATTTGTAC
32835689 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
32835717 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
32835744 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
32835759 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:32842366 original size:23 final size:24
Alignment explanation
Indices: 32842310--32842367 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 24
32842300 AGAAGTAAAT
* * *
32842310 AAAATAAAATTTAATAATTTAAGC
1 AAAATAAAAATTAATAATGTAAGA
* *
32842334 AAAATTAAAATTAA-AATGTAATA
1 AAAATAAAAATTAATAATGTAAGA
32842357 AAAATAAAAAT
1 AAAATAAAAAT
32842368 GGCTAAAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 16 0.57
24 12 0.43
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (24 bp):
AAAATAAAAATTAATAATGTAAGA
Found at i:32844177 original size:22 final size:23
Alignment explanation
Indices: 32844137--32844181 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
32844127 TTTCCATGAC
32844137 ACACAAGGTCACACACCCGTATGG
1 ACACAAGG-CACACACCCGTATGG
*
32844161 ACACAAGG-ACACGCCCGTATG
1 ACACAAGGCACACACCCGTATG
32844182 CCTTCGACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 12 0.60
24 8 0.40
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.11
Consensus pattern (23 bp):
ACACAAGGCACACACCCGTATGG
Found at i:32844263 original size:273 final size:271
Alignment explanation
Indices: 32843778--32844317 Score: 954
Period size: 273 Copynumber: 2.0 Consensus size: 271
32843768 AGGGGCCTAC
32843778 GAAGCCCTAAACATGCATTGAAAGTAGTTAGGGACTAAACTGTGAACCTTAGAAAGTTTTGGGAA
1 GAAGCCCTAAACATGCATTGAAAGTAGTTAGGGACTAAACTGTGAACCTTAGAAAGTTTTGGGAA
* * *
32843843 AATTTAGAAAATTTTTCCATGGCACAAGGTCACACACCCGTATGGACACAAGGACACGTCCGTGT
66 AATTTAGAAAATTTTTCCATGACACAAGGTCACACACCCGTATGGACACAAGGACACGCCCGTAT
*
32843908 GCCTTCGACACGCCCATGTCTTTAGGCTGTGTAACTCTCTGACTATGATGTCAGCGAATAATTTG
131 GCCTTCGACACGCCCATGTCTTCAGGCTGTGTAACTCTCTGACTATGATGTCAGCGAATAATTTG
* * *
32843973 GAAAACATGGCCAAGCCACACGCTCGTGTGCTAAGGCCGTATCCCCTACACAGTTGACACATACT
196 GAAAACATGGCCAAGCCACACGCCCATGTGCTAAGGCCGTATCCCCTACACAGTTGACACACACT
*
32844038 GTCGTGTATAT
261 ATCGTGTATAT
*
32844049 GAAGCCCTAAACATGCATTGAAAGTAGTTAGGGACTAAACTTTGAACCTTAGAAAGTTTTGGGAA
1 GAAGCCCTAAACATGCATTGAAAGTAGTTAGGGACTAAACTGTGAACCTTAGAAAGTTTTGGGAA
32844114 AATTTAGAAAATTTTTCCATGACACACAAGGTCACACACCCGTATGGACACAAGGACACGCCCGT
66 AATTTAGAAAATTTTTCCATG--ACACAAGGTCACACACCCGTATGGACACAAGGACACGCCCGT
*
32844179 ATGCCTTCGACACGCCCGTGTCTTCAGGCTGTGTAACTCTCTGACTATGATGTCAGCGAATAATT
129 ATGCCTTCGACACGCCCATGTCTTCAGGCTGTGTAACTCTCTGACTATGATGTCAGCGAATAATT
* *
32844244 TGGAAAACATGGCCAAGCCATACGCCCATGTGCTAAGGCCGTATCCCCTACACAGTTGAGACACA
194 TGGAAAACATGGCCAAGCCACACGCCCATGTGCTAAGGCCGTATCCCCTACACAGTTGACACACA
32844309 CTATCGTGT
259 CTATCGTGT
32844318 CTCAGCCCGT
Statistics
Matches: 255, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
271 85 0.33
273 170 0.67
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (271 bp):
GAAGCCCTAAACATGCATTGAAAGTAGTTAGGGACTAAACTGTGAACCTTAGAAAGTTTTGGGAA
AATTTAGAAAATTTTTCCATGACACAAGGTCACACACCCGTATGGACACAAGGACACGCCCGTAT
GCCTTCGACACGCCCATGTCTTCAGGCTGTGTAACTCTCTGACTATGATGTCAGCGAATAATTTG
GAAAACATGGCCAAGCCACACGCCCATGTGCTAAGGCCGTATCCCCTACACAGTTGACACACACT
ATCGTGTATAT
Found at i:32846094 original size:50 final size:48
Alignment explanation
Indices: 32845975--32846205 Score: 272
Period size: 50 Copynumber: 4.8 Consensus size: 48
32845965 AGGTGCCAAC
* * * *
32845975 GCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAAGCCGAT
* *
32846023 GTCATGTCCCAGACATGGTCTTACACTGACTCTCGTATATCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTC--ATATCGAAGCCGAT
* *
32846073 GCCATGTCCCAGACATGGTCTTCCACTGA--CACATATC-AAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAAGCCGAT
* * *
32846118 GCCATGTCCTAGACATGGTCTTACACT-AGCTCTCATATCTTGAGGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATC--GAAGCCGAT
* *
32846168 GCCATGTCCCAAACATGGTCTTACACTAACTCTCATAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATAT
32846206 GTTCCTAGCA
Statistics
Matches: 157, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
44 1 0.01
45 32 0.20
46 5 0.03
47 7 0.04
48 34 0.22
50 77 0.49
51 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAAGCCGAT
Found at i:32846144 original size:95 final size:97
Alignment explanation
Indices: 32845975--32846194 Score: 311
Period size: 95 Copynumber: 2.3 Consensus size: 97
32845965 AGGTGCCAAC
* *
32845975 GCCATGTCCCAGACATGGTCTTACACTGACTCACACATCAAAGTCGATGTCATGTCCCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTGAC-CACACATCAAAGCCGATGCCATGTCCCAGACATG
*
32846040 GTCTTACACT-GACTCTCGTATATCGAGGCCGAT
65 GTCTTACACTAG-CTCTCATATATCGAGGCCGAT
* * *
32846073 GCCATGTCCCAGACATGGTCTTCCACTGA-CACATATC-AAGCCGATGCCATGTCCTAGACATGG
1 GCCATGTCCCAGACATGGTCTTACACTGACCACACATCAAAGCCGATGCCATGTCCCAGACATGG
* * *
32846136 TCTTACACTAGCTCTCATATCTTGAGGTCGAT
66 TCTTACACTAGCTCTCATATATCGAGGCCGAT
*
32846168 GCCATGTCCCAAACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
32846195 AACTCTCATA
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
95 74 0.67
96 8 0.07
98 28 0.25
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (97 bp):
GCCATGTCCCAGACATGGTCTTACACTGACCACACATCAAAGCCGATGCCATGTCCCAGACATGG
TCTTACACTAGCTCTCATATATCGAGGCCGAT
Found at i:32856883 original size:30 final size:30
Alignment explanation
Indices: 32856826--32856883 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
32856816 TTTTTGAGCA
* **
32856826 TAGGGGTAAAACGATCATTTTGTCAAAGTC
1 TAGGGGCAAAACGATCATTTTACCAAAGTC
* *
32856856 TAGGGGCAAAATGTTCATTTTACCAAAG
1 TAGGGGCAAAACGATCATTTTACCAAAG
32856884 ATGTGAAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAACGATCATTTTACCAAAGTC
Found at i:32857277 original size:46 final size:47
Alignment explanation
Indices: 32857222--32857396 Score: 146
Period size: 46 Copynumber: 3.7 Consensus size: 47
32857212 TCACTTATGT
*
32857222 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
*
32857268 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-G--ACATTGA-GAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGAA
* * ** ** ** *
32857314 GAATTCTAGTGTAAGACATGTCTATGACATGCATCGGCCTTAAGATGTA
1 G-A-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
* *
32857363 -AGCCAGTGTAAGACATGCCTGGGACTTGCATCGG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG
32857397 ATAAGAGTTG
Statistics
Matches: 101, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
45 6 0.06
46 48 0.48
47 28 0.28
48 16 0.16
49 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
Found at i:32860629 original size:44 final size:43
Alignment explanation
Indices: 32860566--32860649 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 43
32860556 CCAAAACATG
* *
32860566 TGTCACATGTATCACGAACTCAGACCACAACTCAATGAGTTTGA
1 TGTCACATATAACACGAACTC-GACCACAACTCAATGAGTTTGA
* * * *
32860610 TGTCACATATAACATGAACTCGGCCATAACTTAATGAGTT
1 TGTCACATATAACACGAACTCGACCACAACTCAATGAGTT
32860650 CAGATTACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 16 0.47
44 18 0.53
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
TGTCACATATAACACGAACTCGACCACAACTCAATGAGTTTGA
Found at i:32865618 original size:33 final size:33
Alignment explanation
Indices: 32865572--32865639 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
32865562 CCATATCTGG
32865572 TTCTGAAACCTGTCTTCGGGACATCTGAATCTT
1 TTCTGAAACCTGTCTTCGGGACATCTGAATCTT
* *
32865605 TTCTGAAAGCTGTCTTTGGGACATCTGAATCTT
1 TTCTGAAACCTGTCTTCGGGACATCTGAATCTT
32865638 TT
1 TT
32865640 ACTCGTAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (33 bp):
TTCTGAAACCTGTCTTCGGGACATCTGAATCTT
Found at i:32870637 original size:5 final size:5
Alignment explanation
Indices: 32870627--32870654 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
32870617 AATGCCAAAC
32870627 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
32870655 TATTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:32871055 original size:17 final size:17
Alignment explanation
Indices: 32871033--32871066 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32871023 GCCAGACACA
*
32871033 AATAGAATACCAGATAT
1 AATAGAATAACAGATAT
32871050 AATAGAATAACAGATAT
1 AATAGAATAACAGATAT
32871067 GTAACACCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24
Consensus pattern (17 bp):
AATAGAATAACAGATAT
Found at i:32872708 original size:51 final size:51
Alignment explanation
Indices: 32872639--32872836 Score: 335
Period size: 51 Copynumber: 3.9 Consensus size: 51
32872629 AGATACACAA
*
32872639 TGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAG
*
32872690 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTTACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
*
32872741 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
* *
32872792 TGGCCTTCACATAGTACCATACTTGTGTTCAAAGCTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
32872837 CTAAGGTTCA
Statistics
Matches: 139, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
50 1 0.01
51 138 0.99
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
Found at i:32872916 original size:52 final size:52
Alignment explanation
Indices: 32872860--32872982 Score: 185
Period size: 52 Copynumber: 2.4 Consensus size: 52
32872850 AGGAAATTTC
* * * *
32872860 TCACTTAACACAATGCCATGGGCTTATTTCGCTTAGATGCCATGG-ACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCAATGGTA-TTATT
*
32872912 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCAATGGTATTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCAATGGTATTATT
32872964 TCACTTAGCACAATGCCAT
1 TCACTTAGCACAATGCCAT
32872983 ATCCTAGATA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 63 0.98
53 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCAATGGTATTATT
Found at i:32872937 original size:28 final size:27
Alignment explanation
Indices: 32872860--32872982 Score: 125
Period size: 24 Copynumber: 4.7 Consensus size: 27
32872850 AGGAAATTTC
* *
32872860 TCACTTAACACAATGCCATGGGCTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
*
32872888 TCGCTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
32872912 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
32872940 TCACTTAG---ATGCAATGGTA-TTATT
1 TCACTTAGCACATGCCATGG-ACTTATT
32872964 TCACTTAGCACAATGCCAT
1 TCACTTAGCAC-ATGCCAT
32872983 ATCCTAGATA
Statistics
Matches: 80, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
24 42 0.52
25 2 0.03
27 1 0.01
28 35 0.44
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:32878093 original size:58 final size:56
Alignment explanation
Indices: 32877994--32878113 Score: 145
Period size: 58 Copynumber: 2.1 Consensus size: 56
32877984 TATGGAAAAA
32877994 GAAAAAAAAGAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAAGAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
* ***
32878050 GAAAGAAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAAAAAAAGAAAAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
*
32878108 GGAAAA
1 GAAAAA
32878114 GGGGGAGGAT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
56 16 0.30
57 2 0.04
58 33 0.61
59 3 0.06
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (56 bp):
GAAAAAAAAGAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:32879369 original size:40 final size:40
Alignment explanation
Indices: 32879303--32879469 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
32879293 AAATTGAATG
* * *
32879303 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
32879342 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
32879382 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
32879422 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
32879462 ATATCCGG
1 ATATCCGG
32879470 ATATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:32882951 original size:46 final size:46
Alignment explanation
Indices: 32882893--32882985 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
32882883 TCATAAGTTA
*
32882893 GCAAATTACCGAGTTTCCATGAATTTATTTGTAACAACATAAACAT
1 GCAAATTACCGAGTTGCCATGAATTTATTTGTAACAACATAAACAT
*
32882939 GCAAATTACCGAGTTGCCGTGAATTTATTTGTAACAACATAAACAT
1 GCAAATTACCGAGTTGCCATGAATTTATTTGTAACAACATAAACAT
32882985 G
1 G
32882986 AGTTTAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (46 bp):
GCAAATTACCGAGTTGCCATGAATTTATTTGTAACAACATAAACAT
Found at i:32886376 original size:27 final size:28
Alignment explanation
Indices: 32886336--32886408 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 28
32886326 TCGTGAGCTG
*
32886336 TACTGGT-GACTATGTCAC-ATTCATT-A
1 TACTGGTGGACTATGCCACAATT-ATTGA
32886362 TTACTGGTGGA-TATGCCACAATTATTGA
1 -TACTGGTGGACTATGCCACAATTATTGA
*
32886390 TACTGGTGG-CTTTGCCACA
1 TACTGGTGGACTATGCCACA
32886409 TTTACTACTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 34 0.85
28 6 0.15
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (28 bp):
TACTGGTGGACTATGCCACAATTATTGA
Found at i:32886664 original size:60 final size:61
Alignment explanation
Indices: 32886587--32886730 Score: 272
Period size: 61 Copynumber: 2.4 Consensus size: 61
32886577 TACTGTATTG
*
32886587 GGCTTAGGCCCACACTGTTACTGTGTAGGGATAAGGCCCAG-CTGTACTGTTACTGAATAA
1 GGCTTAGGCCCAGACTGTTACTGTGTAGGGATAAGGCCCAGACTGTACTGTTACTGAATAA
32886647 GGCTTAGGCCCAGACTGTTACTGTGTAGGGATAAGGCCCAGACTGTACTGTTACTGAATAA
1 GGCTTAGGCCCAGACTGTTACTGTGTAGGGATAAGGCCCAGACTGTACTGTTACTGAATAA
32886708 GGCTTAGGCCCAGACTGTTACTG
1 GGCTTAGGCCCAGACTGTTACTG
32886731 CACGCATTGT
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
60 40 0.49
61 42 0.51
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (61 bp):
GGCTTAGGCCCAGACTGTTACTGTGTAGGGATAAGGCCCAGACTGTACTGTTACTGAATAA
Found at i:32886727 original size:28 final size:28
Alignment explanation
Indices: 32886587--32886730 Score: 108
Period size: 28 Copynumber: 4.8 Consensus size: 28
32886577 TACTGTATTG
* ** *
32886587 GGCTTAGGCCCACACTGTTACTGTGTAG
1 GGCTTAGGCCCAGACTGTTACTGAATAA
* *
32886615 GGATAAGGCCCAGCTGTACTGTTACTGAATAA
1 GGCTTAGGCCCA---G-ACTGTTACTGAATAA
** *
32886647 GGCTTAGGCCCAGACTGTTACTGTGTAG
1 GGCTTAGGCCCAGACTGTTACTGAATAA
* *
32886675 GGATAAGGCCCAGACTGTACTGTTACTGAATAA
1 GGCTTAGGCCC--A--G-ACTGTTACTGAATAA
32886708 GGCTTAGGCCCAGACTGTTACTG
1 GGCTTAGGCCCAGACTGTTACTG
32886731 CACGCATTGT
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
28 41 0.46
29 2 0.02
30 1 0.01
31 1 0.01
32 23 0.26
33 21 0.24
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (28 bp):
GGCTTAGGCCCAGACTGTTACTGAATAA
Found at i:32887395 original size:28 final size:28
Alignment explanation
Indices: 32887355--32887410 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
32887345 GTTTCTAAAT
* *
32887355 TTTTTTCTCAAATTAGGGTTTT-GAAAAG
1 TTTTTCCTAAAATT-GGGTTTTGGAAAAG
*
32887383 TTTTTCCTAAAATTTGGTTTTGGAAAAG
1 TTTTTCCTAAAATTGGGTTTTGGAAAAG
32887411 ATGATTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (28 bp):
TTTTTCCTAAAATTGGGTTTTGGAAAAG
Found at i:32888844 original size:27 final size:27
Alignment explanation
Indices: 32888758--32888845 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
32888748 TCATGAGTTA
* * *
32888758 TACTGGTGACTATGTCACATTCACTAT
1 TACTGGTGACTATGCCACATTTACTGT
* * * *
32888785 TACTAGTGGCTATGCCACAATTACTGA
1 TACTGGTGACTATGCCACATTTACTGT
*
32888812 TACTGGTGACTTTGCCACATTTACTGT
1 TACTGGTGACTATGCCACATTTACTGT
*
32888839 TTCTGGT
1 TACTGGT
32888846 AGCTATGTTG
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (27 bp):
TACTGGTGACTATGCCACATTTACTGT
Found at i:32896213 original size:40 final size:40
Alignment explanation
Indices: 32896168--32896334 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
32896158 CGGAATATAA
32896168 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
32896208 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
32896248 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32896288 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32896327 CCGGATAT
1 CCGGATAT
32896335 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32896318 original size:80 final size:79
Alignment explanation
Indices: 32896184--32896334 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
32896174 ATAATCACGT
*
32896184 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
32896249 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
32896264 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
32896327 CCGGATAT
64 CCGGATAT
32896335 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:32904221 original size:40 final size:40
Alignment explanation
Indices: 32904176--32904342 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
32904166 CGGAATATAA
32904176 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
32904216 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
32904256 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32904296 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32904335 CCGGATAT
1 CCGGATAT
32904343 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32904326 original size:80 final size:79
Alignment explanation
Indices: 32904192--32904342 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
32904182 ATAATCACGT
*
32904192 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
32904257 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
32904272 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
32904335 CCGGATAT
64 CCGGATAT
32904343 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:32905608 original size:58 final size:59
Alignment explanation
Indices: 32905536--32905648 Score: 142
Period size: 58 Copynumber: 1.9 Consensus size: 59
32905526 CCCCCTTTTC
32905536 CCTTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTT-TTTTTTCTTT
1 CCTTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTTCTTTTTTCTTT
*** **
32905594 CCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTTTTT
1 CCTTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTCTTTTTT
32905649 TTTTTTTCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
58 37 0.79
59 10 0.21
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (59 bp):
CCTTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTCTTTTTTCTTT
Done.