Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 116 of 770
Found at i:33202382 original size:17 final size:21
Alignment explanation
Indices: 33202350--33202406 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
33202340 GCTGCGATAT
*
33202350 TGGTGTCTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGGTACGGG
33202371 TGGTGTGTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGGTACGGG
33202392 TGGTGTGTTGGTTGG
1 TGGTGTGTTGGTTGG
33202407 ATTGGGGTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.04, C:0.05, G:0.51, T:0.40
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGTACGGG
Found at i:33202480 original size:28 final size:28
Alignment explanation
Indices: 33202435--33202500 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
33202425 ACTGCACTGT
* * *
33202435 ACTGATACTGAATTGGGCTTAGGCCCAC
1 ACTGTTACTGAATAGGGCTAAGGCCCAC
* *
33202463 ACTGTTACTGTATAGGGCTAAGGCCCAG
1 ACTGTTACTGAATAGGGCTAAGGCCCAC
33202491 ACTGTTACTG
1 ACTGTTACTG
33202501 CAGGCTATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGAATAGGGCTAAGGCCCAC
Found at i:33203826 original size:15 final size:14
Alignment explanation
Indices: 33203806--33203835 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
33203796 AAGGGGTTCC
33203806 CCAAAACACATCCAT
1 CCAAAACACA-CCAT
33203821 CCAAAACACACCAT
1 CCAAAACACACCAT
33203835 C
1 C
33203836 ACATATGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.47, C:0.43, G:0.00, T:0.10
Consensus pattern (14 bp):
CCAAAACACACCAT
Found at i:33204823 original size:19 final size:19
Alignment explanation
Indices: 33204799--33204836 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
33204789 AAAGAAGGTA
33204799 AAGTGGTGCTATGGTGGTG
1 AAGTGGTGCTATGGTGGTG
* *
33204818 AAGTGGTGGTTTGGTGGTG
1 AAGTGGTGCTATGGTGGTG
33204837 GTAGTATCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.50, T:0.34
Consensus pattern (19 bp):
AAGTGGTGCTATGGTGGTG
Found at i:33208874 original size:11 final size:11
Alignment explanation
Indices: 33208858--33208886 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
33208848 AAAAATTTAG
33208858 AAATTTTGTGA
1 AAATTTTGTGA
33208869 AAATTTTGTGA
1 AAATTTTGTGA
33208880 AAATTTT
1 AAATTTT
33208887 CTAAGATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (11 bp):
AAATTTTGTGA
Found at i:33214358 original size:16 final size:16
Alignment explanation
Indices: 33214337--33214371 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
33214327 AGGTAGTCTT
33214337 ACACAGTCTCAATTTC
1 ACACAGTCTCAATTTC
*
33214353 ACACAGTCTCAGTTTC
1 ACACAGTCTCAATTTC
33214369 ACA
1 ACA
33214372 ACCCTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (16 bp):
ACACAGTCTCAATTTC
Found at i:33215725 original size:18 final size:21
Alignment explanation
Indices: 33215702--33215743 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
33215692 AATATTAAAT
33215702 TTAATT-TATT-TAAA-ATAA
1 TTAATTCTATTGTAAAGATAA
33215720 TTAATTCTATTGTAAAGATAA
1 TTAATTCTATTGTAAAGATAA
33215741 TTA
1 TTA
33215744 TATATTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 4 0.19
20 4 0.19
21 7 0.33
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (21 bp):
TTAATTCTATTGTAAAGATAA
Found at i:33216566 original size:21 final size:24
Alignment explanation
Indices: 33216522--33216568 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 24
33216512 TTTACTTATT
33216522 ATTAATATAAAAATAATGATAACA
1 ATTAATATAAAAATAATGATAACA
*
33216546 ATTAA-ATTAAAA-AAT-ATAACA
1 ATTAATATAAAAATAATGATAACA
33216567 AT
1 AT
33216569 ACTGTAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 3 0.14
23 6 0.27
24 5 0.23
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (24 bp):
ATTAATATAAAAATAATGATAACA
Found at i:33219598 original size:79 final size:79
Alignment explanation
Indices: 33219503--33219660 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
33219493 GATAATAAAA
33219503 GCAAAAATGCAAATTTATTAATGTTAGTAAATACTTACAAAATGTGTCTCTAAATAGACATAGTA
1 GCAAAAATGCAAATTTATTAATGTTAGTAAATACTTACAAAATGTGTCTCTAAATAGACATAGTA
33219568 ATAAAAACATCATT
66 ATAAAAACATCATT
33219582 GCAAAAATGCAAATTTATTAATGTTAGTAAATACTTACAAAATGTGTCTCTAAATAGACATAGTA
1 GCAAAAATGCAAATTTATTAATGTTAGTAAATACTTACAAAATGTGTCTCTAAATAGACATAGTA
33219647 ATAAAAACATCATT
66 ATAAAAACATCATT
33219661 AATCATCTTC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.32
Consensus pattern (79 bp):
GCAAAAATGCAAATTTATTAATGTTAGTAAATACTTACAAAATGTGTCTCTAAATAGACATAGTA
ATAAAAACATCATT
Found at i:33221666 original size:27 final size:28
Alignment explanation
Indices: 33221628--33221684 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
33221618 TTGAAAGATG
*
33221628 AAATGGAAAATGTTG-ATATAAGTACTT
1 AAATGGAAAATGATGTATATAAGTACTT
* * *
33221655 AAATTGAAAATGATGTTTATAAGTTCTT
1 AAATGGAAAATGATGTATATAAGTACTT
33221683 AA
1 AA
33221685 TGCATGAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.37
Consensus pattern (28 bp):
AAATGGAAAATGATGTATATAAGTACTT
Found at i:33223711 original size:2 final size:2
Alignment explanation
Indices: 33223704--33223767 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
33223694 ATATTGCCTC
33223704 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33223746 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
33223768 CTTAATGTAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33224297 original size:116 final size:116
Alignment explanation
Indices: 33224093--33224321 Score: 361
Period size: 116 Copynumber: 2.0 Consensus size: 116
33224083 TAGAAAAATG
* *
33224093 AATTATATTCTTTTCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTAACCGAAATTAATTAA
*
33224158 TATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATATT
66 TATAATTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATATATT
* * * *
33224209 AATTATATTCTTTCCAAACGAATATTAATTTTCATGTCTTTTATATTTTAACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTAACCGAAATTAATTAA
* *
33224274 TTTAACTT-TTTGTATTAATAAATTTCGTAAAATATATACAATTAATAT
66 TATAA-TTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATAT
33224322 TTTGTATGAA
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
116 101 0.98
117 2 0.02
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (116 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCAAGTCTTTTATATTTTAACCGAAATTAATTAA
TATAATTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATATATT
Found at i:33224372 original size:138 final size:140
Alignment explanation
Indices: 33224197--33224494 Score: 451
Period size: 138 Copynumber: 2.1 Consensus size: 140
33224187 AAATATATAC
* * *
33224197 AATTAATATATTAATTATATTCTTTCCAAACGAATATTAATTT-TCATGTCTTTTATATTTTAAC
1 AATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCT-ATATCTTTTATATTTTAAC
* * *
33224261 TGAAATTAATTAATTTAACT-TTT-TGTATTAATAAATTTC-GTAAAATATATACAATTAATATT
65 CGAAATTAATTAATATAACTGTTTATATATTAATAAA-TTCAGTAAAATATATACAATTAATATT
33224323 TTGTATGAATCA
129 TTGTATGAATCA
* * *
33224335 AATTCATAAATTAATTATATTCTTTCGAAAAGAATATTAATTTCTATATCTTTTATATTTTGACC
1 AATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCTATATCTTTTATATTTTAACC
* *
33224400 GAAATTAATTAATATAATTGTTTATATATTAATAAATTCAGTAATATATATACAATTAATATTTT
66 GAAATTAATTAATATAACTGTTTATATATTAATAAATTCAGTAAAATATATACAATTAATATTTT
33224465 GTATGAATCA
131 GTATGAATCA
33224475 AATTCATATATTAATTATAT
1 AATTCATATATTAATTATAT
33224495 CTAAGTTTTT
Statistics
Matches: 144, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
138 73 0.51
139 7 0.05
140 64 0.44
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (140 bp):
AATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCTATATCTTTTATATTTTAACC
GAAATTAATTAATATAACTGTTTATATATTAATAAATTCAGTAAAATATATACAATTAATATTTT
GTATGAATCA
Found at i:33224484 original size:69 final size:70
Alignment explanation
Indices: 33224286--33224494 Score: 166
Period size: 69 Copynumber: 3.0 Consensus size: 70
33224276 TAACTTTTTG
*
33224286 TATTAATAAATTTC-GTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATA-AATTAA
1 TATTAATAAA-TTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAA
33224349 TTATAT
65 TTATAT
* * * * * * * * * *
33224355 TCTTTCGAA-AAGAAT-ATTAATTTCTATATC-TTTTATATTTTG-ACCGAAAT-TAATTAATAT
1 T-ATT--AATAA-ATTCAGTAATATATATA-CAATTAATATTTTGTA-TG-AATCAAATTCATAT
**
33224415 AATTGTTTATA-
59 AATTAATTATAT
33224426 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATAT-ATTAAT
1 TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAAT
33224490 TATAT
66 TATAT
33224495 CTAAGTTTTT
Statistics
Matches: 100, Mismatches: 25, Indels: 30
0.65 0.16 0.19
Matches are distributed among these distances:
68 16 0.16
69 32 0.32
70 6 0.06
71 30 0.30
72 16 0.16
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (70 bp):
TATTAATAAATTCAGTAATATATATACAATTAATATTTTGTATGAATCAAATTCATATAATTAAT
TATAT
Found at i:33224845 original size:63 final size:63
Alignment explanation
Indices: 33224746--33224874 Score: 258
Period size: 63 Copynumber: 2.0 Consensus size: 63
33224736 TATGGCCGAA
33224746 TTTGAAAAGCTACATTGGCCACCAGAATGGCCTAAAAAAGCTTTCGTAATTTCAAACGTACTT
1 TTTGAAAAGCTACATTGGCCACCAGAATGGCCTAAAAAAGCTTTCGTAATTTCAAACGTACTT
33224809 TTTGAAAAGCTACATTGGCCACCAGAATGGCCTAAAAAAGCTTTCGTAATTTCAAACGTACTT
1 TTTGAAAAGCTACATTGGCCACCAGAATGGCCTAAAAAAGCTTTCGTAATTTCAAACGTACTT
33224872 TTT
1 TTT
33224875 AAGCCATTTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (63 bp):
TTTGAAAAGCTACATTGGCCACCAGAATGGCCTAAAAAAGCTTTCGTAATTTCAAACGTACTT
Found at i:33225461 original size:27 final size:31
Alignment explanation
Indices: 33225420--33225481 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
33225410 CGTAATTTAA
33225420 CATAAAAAGTCTCAAAT-AGT-AAT-AAAGTC
1 CATAAAAAGTCTCAAATCA-TAAATAAAAGTC
33225449 CATAAAAA-T-TCAAATCATAAATAAAAGTC
1 CATAAAAAGTCTCAAATCATAAATAAAAGTC
33225478 CATA
1 CATA
33225482 TTTATTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
27 7 0.23
28 5 0.17
29 18 0.60
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.24
Consensus pattern (31 bp):
CATAAAAAGTCTCAAATCATAAATAAAAGTC
Found at i:33231808 original size:28 final size:27
Alignment explanation
Indices: 33231745--33231814 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
33231735 ATAGTGAGTC
33231745 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
33231772 CACACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
33231800 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33231815 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:33233514 original size:49 final size:49
Alignment explanation
Indices: 33233447--33233684 Score: 296
Period size: 49 Copynumber: 4.8 Consensus size: 49
33233437 TAGCCAAAGC
* * * * *
33233447 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
33233496 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
33233545 TATCTGGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
33233595 CATGTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
33233646 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
33233685 TGCGACCTCA
Statistics
Matches: 162, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 87 0.54
50 41 0.25
51 33 0.20
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:33233636 original size:99 final size:100
Alignment explanation
Indices: 33233447--33233691 Score: 323
Period size: 101 Copynumber: 2.5 Consensus size: 100
33233437 TAGCCAAAGC
* * ** *
33233447 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
*
33233512 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTACACTTAGTACTACACACGTGATCACAAT
* * * * **
33233545 TATCTGGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACCTAACCATGTGATACACGTA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
33233610 GTAGCCTACACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTACACTTAGTACTACACACGTGATCACAAT
* * *
33233646 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
33233692 TCACAATAGA
Statistics
Matches: 124, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 40 0.32
99 41 0.33
100 1 0.01
101 42 0.34
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTACACTTAGTACTACACACGTGATCACAAT
Found at i:33235880 original size:15 final size:15
Alignment explanation
Indices: 33235824--33235888 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
33235814 TAAAGATAAC
*
33235824 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
33235838 AAAAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
33235853 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
33235868 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
33235883 AAGAAA
1 AAGAAA
33235889 CCCAAGATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 10 0.24
15 29 0.69
16 3 0.07
ACGTcount: A:0.65, C:0.14, G:0.12, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:33235890 original size:30 final size:31
Alignment explanation
Indices: 33235824--33235892 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
33235814 TAAAGATAAC
*
33235824 AAGAAAACC-GAATAAAAAAATCCAAGATAG
1 AAGAAACCCAGAATAAAAAAATCCAAGATAG
*
33235854 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAAAAATCCAAG-ATAG
33235883 AAGAAACCCA
1 AAGAAACCCA
33235893 AGATATGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.62, C:0.17, G:0.12, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAAAAATCCAAGATAG
Found at i:33237804 original size:80 final size:80
Alignment explanation
Indices: 33237720--33237868 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
33237710 TATGGTAACC
* * * *
33237720 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
33237784 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
33237800 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
33237865 CCGG
66 CCGG
33237869 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:33237810 original size:40 final size:38
Alignment explanation
Indices: 33237761--33237868 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
33237751 ATCACGATTT
*
33237761 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
33237801 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
33237841 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
33237869 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:33245919 original size:80 final size:80
Alignment explanation
Indices: 33245835--33245983 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
33245825 TATGGTAACC
* * * *
33245835 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
33245899 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
33245915 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
33245980 CCGG
66 CCGG
33245984 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:33245925 original size:40 final size:38
Alignment explanation
Indices: 33245876--33245983 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
33245866 ATCACGATTT
*
33245876 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
33245916 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
33245956 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
33245984 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:33271290 original size:20 final size:21
Alignment explanation
Indices: 33271247--33271292 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
33271237 ACTGTTTTGT
33271247 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
33271267 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
33271286 TATGGGC
1 TATGGGC
33271293 AAGGCCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:33272993 original size:27 final size:27
Alignment explanation
Indices: 33272962--33273266 Score: 100
Period size: 27 Copynumber: 11.6 Consensus size: 27
33272952 TTAGTTTACC
** * *
33272962 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCCAAATACCCTCGATTTATA
* *
33272989 AAATTA-CCAAAGTACCCCCGTTTTATA
1 AAATTACCCAAA-TACCCTCGATTTATA
* *
33273016 AAATTACCCAAATATCCTCGATTTCTA
1 AAATTACCCAAATACCCTCGATTTATA
* *
33273043 AAATTACCGAAATA------A--GATA
1 AAATTACCCAAATACCCTCGATTTATA
* ** * *
33273062 GAATTA-CCATTTTACTCTCGATTTACA
1 AAATTACCCA-AATACCCTCGATTTATA
* * ****
33273089 GAATTATCGTTTTACCCTCGATTTATA
1 AAATTACCCAAATACCCTCGATTTATA
* ** * *
33273116 GAATTA-CCATTTTACCCTTGATTTACA
1 AAATTACCCA-AATACCCTCGATTTATA
** *
33273143 AAATTACTGAAATACCCTTCG-TTTACA
1 AAATTACCCAAATACCC-TCGATTTATA
* * **
33273170 AAATTA-CAAAACACCCTCGATCAATA
1 AAATTACCCAAATACCCTCGATTTATA
* * *
33273196 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCCAAATACCCTCGA-TTTATA
* * *
33273223 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCCAAATACCCTC-GATTTATA
33273250 AAATTACCCAAATACCC
1 AAATTACCCAAATACCC
33273267 CTGTAGGGTA
Statistics
Matches: 212, Mismatches: 47, Indels: 38
0.71 0.16 0.13
Matches are distributed among these distances:
18 2 0.01
19 9 0.04
21 1 0.00
25 4 0.02
26 22 0.10
27 164 0.77
28 10 0.05
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCGATTTATA
Found at i:33273175 original size:54 final size:54
Alignment explanation
Indices: 33273063--33273176 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
33273053 AATAAGATAG
* * *** * *
33273063 AATTACCATTTTACTCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
*
33273117 AATTACCATTTTACCCTTGATTTACAAAATTA-CTGAAATACCCTTCG-TTTACAA
1 AATTACCATTTTACCCTCGATTTACAAAATTATC-GAAATACCC-TCGATTTACAA
33273171 AATTAC
1 AATTAC
33273177 AAAACACCCT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.02
54 46 0.92
55 3 0.06
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
Found at i:33273267 original size:27 final size:28
Alignment explanation
Indices: 33273194--33273269 Score: 120
Period size: 27 Copynumber: 2.8 Consensus size: 28
33273184 CCTCGATCAA
33273194 TAAAATTACCAAAATACCCCT-AGTTTG
1 TAAAATTACCAAAATACCCCTGAGTTTG
33273221 TAAAATTACCAAAATACCCCTGA-TTTG
1 TAAAATTACCAAAATACCCCTGAGTTTG
* *
33273248 TGAAATTACCCAAATACCCCTG
1 TAAAATTACCAAAATACCCCTG
33273270 TAGGGTAGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 45 0.98
28 1 0.02
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.28
Consensus pattern (28 bp):
TAAAATTACCAAAATACCCCTGAGTTTG
Found at i:33273281 original size:27 final size:27
Alignment explanation
Indices: 33273251--33273418 Score: 221
Period size: 27 Copynumber: 6.3 Consensus size: 27
33273241 TGATTTGTGA
*
33273251 AATTACCCAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
33273278 AATTACCGAAATACATCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33273305 AATTAGCGAAATACTCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33273332 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
33273359 AATTATCGAAATA-CCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
33273385 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
33273412 AATTACC
1 AATTACC
33273419 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.19
27 99 0.81
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33273282 original size:54 final size:53
Alignment explanation
Indices: 33273196--33273419 Score: 202
Period size: 54 Copynumber: 4.2 Consensus size: 53
33273186 TCGATCAATA
** * * **
33273196 AAATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT
1 AAATTACCAAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTGTA-GGGT
* **
33273249 GAAATTACCCAAATACCCCTGTAGGGTAGAATTACCGAAATACATCTGTAGGGT
1 -AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
* * * *
33273303 AGAATTAGCGAAATACTCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGT
1 A-AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
* * * * * *
33273357 AGAATTATCGAAATA-CCCTGTAGGGTGGAATTACCGAGATACCCTTGTGGGGT
1 A-AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
33273410 AAAATTACCA
1 -AAATTACCA
33273420 TTTTGCCCCT
Statistics
Matches: 142, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
53 41 0.29
54 100 0.70
55 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
Found at i:33273852 original size:6 final size:6
Alignment explanation
Indices: 33273821--33273963 Score: 114
Period size: 6 Copynumber: 23.3 Consensus size: 6
33273811 TCGCATTCCC
* * *
33273821 ATTCGG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
33273870 -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
33273920 ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
33273964 AATGTTTCTT
Statistics
Matches: 109, Mismatches: 17, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
5 6 0.06
6 92 0.84
7 7 0.06
8 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:33273904 original size:43 final size:43
Alignment explanation
Indices: 33273843--33273954 Score: 215
Period size: 43 Copynumber: 2.6 Consensus size: 43
33273833 ATTCTATTAC
*
33273843 CTGATACTGATTCTGATTCTGATTCTGTCACCTAATTTTGATT
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATTTTGATT
33273886 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATTTTGATT
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATTTTGATT
33273929 CTGATTCTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCTGATTCT
33273955 AGTTCTGATA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (43 bp):
CTGATTCTGATTCTGATTCTGATTCTGTCACCTAATTTTGATT
Found at i:33275963 original size:27 final size:26
Alignment explanation
Indices: 33275933--33276001 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 26
33275923 CTCGACTTGC
33275933 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAA-TACCCCCGATTTAT
* * *
33275960 AAAATTACCCAAATATCCTCGATTTCT
1 AAAATTA-CCAAATACCCCCGATTTAT
33275987 AAAATTACCGAAATA
1 AAAATTACC-AAATA
33276002 AGATAGAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
27 30 0.81
28 5 0.14
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAATACCCCCGATTTAT
Found at i:33276036 original size:27 final size:27
Alignment explanation
Indices: 33276006--33276094 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
33275996 GAAATAAGAT
* **
33276006 AGAATTACCATTTTACTTTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
33276033 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
*
33276060 AAAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
33276087 AGAATTAC
1 AGAATTAC
33276095 TGAAATACCC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.40
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:33276103 original size:27 final size:27
Alignment explanation
Indices: 33276046--33276158 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 27
33276036 ATTATCGTTT
* ***
33276046 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGAAA
* *
33276073 TACCCTCGATTTACAGAATTACTGAAA
1 TACCCTCGATTTACAAAATTACCGAAA
* * *
33276100 TACCCTTGTTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCGAAA
** * *
33276127 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCGAAA
33276154 TACCC
1 TACCC
33276159 CTGGTTTGTG
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGAAA
Found at i:33276104 original size:54 final size:54
Alignment explanation
Indices: 33276008--33276123 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
33275998 AATAAGATAG
** *** *
33276008 AATTACCATTTTACTTTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAA
1 AATTACCATTTTACCCTCGATTTACAGAATTATCGAAATACCCTCGATTTACAA
* * *
33276062 AATTACCGTTTTACCCTCGATTTACAGAATTA-CTGAAATACCCTTGTTTTACAA
1 AATTACCATTTTACCCTCGATTTACAGAATTATC-GAAATACCCTCGATTTACAA
33276116 AATTACCA
1 AATTACCA
33276124 AAATACCCTC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTACAGAATTATCGAAATACCCTCGATTTACAA
Found at i:33276176 original size:27 final size:27
Alignment explanation
Indices: 33276146--33276214 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
33276136 TCAATAAAAT
*
33276146 TACCAAAATACCCCTGGTTTGTGAAAC
1 TACCAAAATACCCCTGATTTGTGAAAC
** *
33276173 TACCAAAATACTACTGATTTGTGAAAT
1 TACCAAAATACCCCTGATTTGTGAAAC
*
33276200 TACCGAAATACCCCT
1 TACCAAAATACCCCT
33276215 ATAGGGTAGA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.28
Consensus pattern (27 bp):
TACCAAAATACCCCTGATTTGTGAAAC
Found at i:33276227 original size:27 final size:27
Alignment explanation
Indices: 33276197--33276365 Score: 239
Period size: 27 Copynumber: 6.3 Consensus size: 27
33276187 TGATTTGTGA
*
33276197 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
33276224 AATTATCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
33276251 AATTAGCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33276278 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33276305 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
33276332 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
33276359 AATTACC
1 AATTACC
33276366 ATTTTGCCCC
Statistics
Matches: 128, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33276799 original size:6 final size:6
Alignment explanation
Indices: 33276768--33276897 Score: 122
Period size: 6 Copynumber: 21.3 Consensus size: 6
33276758 TTGCATTCCC
* *
33276768 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
33276817 -TCACCTA ATTTTG ATTCTG ATTCTA ATTTTG ATTCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
33276866 ATTCTG ATTTTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
33276898 AATGTTTCTT
Statistics
Matches: 100, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
5 5 0.05
6 87 0.87
7 5 0.05
8 3 0.03
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:33278878 original size:27 final size:27
Alignment explanation
Indices: 33278847--33279152 Score: 128
Period size: 27 Copynumber: 11.6 Consensus size: 27
33278837 TTAGTTTACC
* *
33278847 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
33278874 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
33278901 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
33278928 AAATTACCGAAATA----AGA----TA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *** * *
33278947 GAATTACTATTTTACTCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** * * *
33278974 GAATTACCGTTTTAGCCTAGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** **
33279001 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * * * **
33279028 GAATTACTAAAATGCCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
***
33279055 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
33279082 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
33279109 AAATTACCAAAATACTCCT-AATTTGTG
1 AAATTACCAAAATAC-CCTCGATTTGTA
*
33279136 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
33279153 CTGTAGGGTA
Statistics
Matches: 217, Mismatches: 51, Indels: 23
0.75 0.18 0.08
Matches are distributed among these distances:
19 10 0.05
23 4 0.02
26 3 0.01
27 198 0.91
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:33279060 original size:54 final size:54
Alignment explanation
Indices: 33279013--33279123 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 54
33279003 ATTACCATTT
** * * * *
33279013 TACCCTCGATTTACAGAATTACTAAAATGCCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATCAACAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
* **
33279067 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAACAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
33279121 TAC
1 TAC
33279124 TCCTAATTTG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (54 bp):
TACCCTCGATCAACAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
Found at i:33279167 original size:27 final size:27
Alignment explanation
Indices: 33279137--33279242 Score: 167
Period size: 27 Copynumber: 3.9 Consensus size: 27
33279127 TAATTTGTGA
33279137 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
33279164 AATTACCGAAATACATCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33279191 AATTAGCGAAATACTCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33279218 AATTACCGAAATACCCCTGTAGGGT
1 AATTACCGAAATACCCCTGTAGGGT
33279243 GTACATGAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33279168 original size:81 final size:81
Alignment explanation
Indices: 33279083--33279242 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 81
33279073 CGATCAATAA
* ** **
33279083 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACTCCTA-ATTTGT-GAAATTACCG
1 AATTACCAAAATACACCT-GTAGGGTAAAATTACCAAAATACTCCTATA-GGGTAG-AATTACCG
33279145 AAATACCCCTGTAGGGTAG
63 AAATACCCCTGTAGGGTAG
* * * * *
33279164 AATTACCGAAATACATCTGTAGGGTAGAATTAGCGAAATACTCCTATAGGGTAGAATTACCGAAA
1 AATTACCAAAATACACCTGTAGGGTAAAATTACCAAAATACTCCTATAGGGTAGAATTACCGAAA
33279229 TACCCCTGTAGGGT
66 TACCCCTGTAGGGT
33279243 GTACATGAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
80 2 0.03
81 62 0.94
82 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACACCTGTAGGGTAAAATTACCAAAATACTCCTATAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:33282590 original size:24 final size:25
Alignment explanation
Indices: 33282519--33282588 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
33282509 AGGAAGTGCT
* * * *
33282519 AAAAGGGCTATGCCCCTGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
33282544 AAAAGGGATTTGTCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
33282569 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
33282589 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:33282601 original size:24 final size:24
Alignment explanation
Indices: 33282569--33282615 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
33282559 CAGTTTATCA
**
33282569 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
33282592 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
33282616 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:33282857 original size:31 final size:31
Alignment explanation
Indices: 33282808--33282890 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
33282798 CGCTTACAGT
33282808 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
33282838 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
33282869 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
33282891 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:33282955 original size:28 final size:28
Alignment explanation
Indices: 33282902--33282955 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
33282892 CGAGACTGAA
* * *
33282902 TTAAGGCTTAGGCCCATATTGCTACTAT
1 TTAAGGCTAAGGCCCAGACTGCTACTAT
33282930 TTAAGGGCTAAGGCCCAGACTG-TACT
1 TTAA-GGCTAAGGCCCAGACTGCTACT
33282956 GTTACTGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 8 0.36
29 14 0.64
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (28 bp):
TTAAGGCTAAGGCCCAGACTGCTACTAT
Found at i:33289014 original size:22 final size:22
Alignment explanation
Indices: 33288988--33289109 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
33288978 TTCCACGTTC
33288988 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
33289010 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
33289035 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
33289057 ATCACATATGTG-CATGT-T-CACATT
1 ATCACAT-TG-GCCAT-TCTGC-C-TT
*
33289081 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
33289104 ATCACA
1 ATCACA
33289110 CATATGCATG
Statistics
Matches: 77, Mismatches: 5, Indels: 36
0.65 0.04 0.31
Matches are distributed among these distances:
22 24 0.31
23 18 0.23
24 17 0.22
25 18 0.23
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:33289020 original size:47 final size:47
Alignment explanation
Indices: 33288985--33289230 Score: 429
Period size: 47 Copynumber: 5.2 Consensus size: 47
33288975 CACTTCCACG
*
33288985 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
33289032 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
33289079 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
33289126 TTCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
33289173 TTCATCACATTGGCCATTCGGCCTTATCACATATGTACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
33289220 TTCATCACATT
1 TTCATCACATT
33289231 AAATCCTAAA
Statistics
Matches: 188, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 188 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:33289133 original size:25 final size:25
Alignment explanation
Indices: 33289104--33289181 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 25
33289094 ATTCGGCCTT
33289104 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
** *
33289129 AT--CACAT-TGGCCAT-TTGGCCTT-
1 ATCACACATAT-G-CATGTTCACATTC
*
33289151 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
33289176 ATCACA
1 ATCACA
33289182 TTGGCCATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 3 0.08
23 14 0.36
24 13 0.33
25 9 0.23
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.33
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:33291549 original size:13 final size:13
Alignment explanation
Indices: 33291531--33291556 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33291521 ATTTTTATTT
33291531 TTAACATAAAATA
1 TTAACATAAAATA
33291544 TTAACATAAAATA
1 TTAACATAAAATA
33291557 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:33293109 original size:28 final size:28
Alignment explanation
Indices: 33293078--33293234 Score: 136
Period size: 28 Copynumber: 5.5 Consensus size: 28
33293068 CTGACTGATT
*
33293078 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
33293106 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
33293135 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * * ** *
33293163 TCGCACACATAGCGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * *
33293192 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
33293220 TTGCACACACAGTGC
1 TCGCACACATAGTGC
33293235 CTCATGATTC
Statistics
Matches: 99, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.01
28 54 0.55
29 43 0.43
30 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:33293138 original size:29 final size:29
Alignment explanation
Indices: 33293105--33293206 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
33293095 GATTAAAGAA
33293105 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* **
33293134 CTCGCACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* * **
33293162 CTCGCACACATAGCGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
33293191 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
33293207 TCGGTTGAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:33293145 original size:57 final size:57
Alignment explanation
Indices: 33293078--33293238 Score: 232
Period size: 57 Copynumber: 2.8 Consensus size: 57
33293068 CTGACTGATT
* * *
33293078 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
33293135 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGCGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * *
33293192 TGGCACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
33293239 TGATTCCAGC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 93 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:33293321 original size:40 final size:40
Alignment explanation
Indices: 33293266--33293639 Score: 586
Period size: 40 Copynumber: 9.3 Consensus size: 40
33293256 CCTTCGAGGT
* *
33293266 TTAGCCTGGATATATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
33293306 TTAGCCCAGATATATCACTAGCACGAATGCTTTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* * *
33293346 TTAGCTCGGATACATCACTAGCACGAATGCTTTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
** * * *
33293386 TTAGCCCTAATACATCACCAGCGCGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
33293426 TTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
33293466 TTAGCCCGGATATATCACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
33293506 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
** *
33293546 TTAGCCTAGATATATCACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
33293586 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
33293626 TTAGCCCGGATATA
1 TTAGCCCGGATATA
33293640 ACATACTGAA
Statistics
Matches: 308, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 308 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:33295168 original size:46 final size:46
Alignment explanation
Indices: 33295080--33295170 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
33295070 TATATATACA
* * *
33295080 CATCTCATACATATCTCACATTAGCCATTTGACTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGACTTTACCACATATC
* * *
33295126 CATCTCATACACATTTCGCATTAACCATTCGGCTTT-CTCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGACTTTAC-CACATAT
33295171 ATACACTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 1 0.03
46 37 0.97
ACGTcount: A:0.29, C:0.31, G:0.05, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGACTTTACCACATATC
Found at i:33295214 original size:22 final size:22
Alignment explanation
Indices: 33295187--33295308 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
33295177 TTCCACGTTC
33295187 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
33295209 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
33295234 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
33295256 ATCACATATGTG-CATGT-T-CACATT
1 ATCACAT-TG-GCCAT-TCTGC-C-TT
*
33295280 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
33295303 ATCACA
1 ATCACA
33295309 CATATGCATG
Statistics
Matches: 77, Mismatches: 5, Indels: 36
0.65 0.04 0.31
Matches are distributed among these distances:
22 24 0.31
23 18 0.23
24 17 0.22
25 18 0.23
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:33295214 original size:47 final size:47
Alignment explanation
Indices: 33295150--33295429 Score: 436
Period size: 47 Copynumber: 6.0 Consensus size: 47
33295140 TTCGCATTAA
* * * * *
33295150 CCATTCGGCTTTCTCACATATATACACT-TCCACGTTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGG
* *
33295197 CCATTCTGCCTTATCACATATATGCATGTTCACATTTATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
*
33295244 CCATTCGGCCTTATCACATATGTGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
*
33295291 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
33295338 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
* * *
33295385 CCATTCGGCCTTATAACATATGTACATGTTCACATTCATCACATT
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
33295430 AAATCCTAAA
Statistics
Matches: 216, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 215 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGG
Found at i:33295355 original size:22 final size:22
Alignment explanation
Indices: 33295232--33295356 Score: 80
Period size: 22 Copynumber: 5.4 Consensus size: 22
33295222 ATGTTCACAT
33295232 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGGCC
* *
33295254 TTATCACATATGTG-CATGTTC-ACA
1 TTATCACAT-TG-GCCA--TTCGGCC
33295278 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
* *
33295301 TTATCACACATAT-G-CATGTTC-ACA
1 TTAT--CACAT-TGGCCA--TTCGGCC
33295325 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
33295348 TTATCACAT
1 TTATCACAT
33295357 ATATGCATGT
Statistics
Matches: 79, Mismatches: 8, Indels: 32
0.66 0.07 0.27
Matches are distributed among these distances:
22 25 0.32
23 19 0.24
24 19 0.24
25 16 0.20
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.34
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:33297736 original size:13 final size:13
Alignment explanation
Indices: 33297718--33297743 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33297708 ATTTTTATTT
33297718 TTAACATAAAATA
1 TTAACATAAAATA
33297731 TTAACATAAAATA
1 TTAACATAAAATA
33297744 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:33298909 original size:3 final size:3
Alignment explanation
Indices: 33298901--33298983 Score: 157
Period size: 3 Copynumber: 27.7 Consensus size: 3
33298891 ATAATGAGAT
*
33298901 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
33298949 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
33298984 CCAACAAAAT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:33302152 original size:38 final size:38
Alignment explanation
Indices: 33302091--33302195 Score: 120
Period size: 40 Copynumber: 2.7 Consensus size: 38
33302081 CCCTGCACAC
* * **
33302091 CAACTCCATCCAACCCAACACACCATGTGGGGATAAAAT
1 CAAC-CCATCCAACCCTACACACCATATAAGGATAAAAT
* * *
33302130 CAACCCATTCATCCCTGCACACCAAATATAAGGATAAAAT
1 CAACCCATCCAACCCTACACACC--ATATAAGGATAAAAT
33302170 CAACCCATCCAACCCTACACACCATA
1 CAACCCATCCAACCCTACACACCATA
33302196 GAGTACCGTA
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
38 18 0.33
39 4 0.07
40 32 0.59
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (38 bp):
CAACCCATCCAACCCTACACACCATATAAGGATAAAAT
Found at i:33311249 original size:80 final size:80
Alignment explanation
Indices: 33311165--33311313 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
33311155 TATGGTAACC
* * * *
33311165 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
33311229 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
33311245 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
33311310 CCGG
66 CCGG
33311314 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:33311255 original size:40 final size:38
Alignment explanation
Indices: 33311206--33311313 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
33311196 ATCACGATTT
*
33311206 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
33311246 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
33311286 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
33311314 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:33318737 original size:40 final size:40
Alignment explanation
Indices: 33318700--33318885 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
33318690 GCTACTCGTT
* * *
33318700 CAAATGCCTTCGGGACATAGCCCGG-TTATAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
33318740 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
33318780 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
33318820 CAAATGCCTTC-GGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
33318861 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33318886 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33321498 original size:26 final size:27
Alignment explanation
Indices: 33321252--33321510 Score: 272
Period size: 27 Copynumber: 9.6 Consensus size: 27
33321242 TACCCTATAG
* * * *
33321252 GGGTATGTCGGTCATTTTACACCA-CAA
1 GGGTATTTCGGTAATTTTACA-AATCGA
* *
33321279 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
33321306 GGGTATTTCGATAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
33321333 GGGTGTTTCCGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
33321360 GGGTATTTCAGTAAGTATACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * **
33321387 AGGTGTTTCAATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
33321414 GGGTATTTCGGTAATTTTACAAATCGT
1 GGGTATTTCGGTAATTTTACAAATCGA
*
33321441 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
33321468 GGGTATTTTGGTAATTTTA-AAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
33321494 AGGTATTTCGGTAATTT
1 GGGTATTTCGGTAATTT
33321511 CTCTTTATTA
Statistics
Matches: 194, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
26 21 0.11
27 171 0.88
28 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:33324051 original size:40 final size:40
Alignment explanation
Indices: 33323992--33324199 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
33323982 CAATTGAATG
* * * * *
33323992 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * * *
33324032 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
33324072 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
33324112 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
33324152 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
33324192 ATATCCGG
1 ATATCCGG
33324200 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:33333962 original size:16 final size:16
Alignment explanation
Indices: 33333941--33333974 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
33333931 GAGAAATAAA
33333941 AATCCTAAAATAACCT
1 AATCCTAAAATAACCT
33333957 AATCCTAAAATAACCT
1 AATCCTAAAATAACCT
33333973 AA
1 AA
33333975 GAAAGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (16 bp):
AATCCTAAAATAACCT
Found at i:33335339 original size:17 final size:17
Alignment explanation
Indices: 33335319--33335352 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33335309 GTATAAAATA
* *
33335319 TTAAGAATTCAATAATT
1 TTAAAAATTAAATAATT
33335336 TTAAAAATTAAATAATT
1 TTAAAAATTAAATAATT
33335353 AAATAAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
TTAAAAATTAAATAATT
Found at i:33335389 original size:16 final size:16
Alignment explanation
Indices: 33335368--33335400 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33335358 AATTTGAGAT
33335368 TTAGGAGAAACAATTA
1 TTAGGAGAAACAATTA
33335384 TTAGGAGAAACAATTA
1 TTAGGAGAAACAATTA
33335400 T
1 T
33335401 CTTACCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.27
Consensus pattern (16 bp):
TTAGGAGAAACAATTA
Found at i:33336384 original size:20 final size:20
Alignment explanation
Indices: 33336359--33336398 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
33336349 CGGAAAATAA
33336359 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
33336379 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
33336399 GAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:33336388 original size:34 final size:33
Alignment explanation
Indices: 33336344--33336408 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
33336334 CAGTAAAATG
33336344 TTTTCCGGAAAATAATTT-CTGGAAAATGATTTAC
1 TTTTCCGGAAAATAATTTACT-GAAAAT-ATTTAC
* *
33336378 TTTTCTGGAAAATGATTTACTGAAAATATTT
1 TTTTCCGGAAAATAATTTACTGAAAATATTT
33336409 TCTGGTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (33 bp):
TTTTCCGGAAAATAATTTACTGAAAATATTTAC
Found at i:33344243 original size:47 final size:47
Alignment explanation
Indices: 33344134--33344244 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
33344124 CCGGGATAAG
*
33344134 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
33344181 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
33344228 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
33344245 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:33345014 original size:4 final size:4
Alignment explanation
Indices: 33345000--33345033 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
33344990 AAATTTCCCT
*
33345000 TTTC TTTTC TTTC TTTC TTTC CTTC TTTC TTTC T
1 TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
33345034 CACGTTTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:33351486 original size:47 final size:47
Alignment explanation
Indices: 33351377--33351487 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
33351367 CCGGGATAAG
*
33351377 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
33351424 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
33351471 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
33351488 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:33358739 original size:47 final size:47
Alignment explanation
Indices: 33358630--33358740 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
33358620 CCGGGATAAG
*
33358630 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
33358677 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
33358724 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
33358741 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:33364387 original size:46 final size:46
Alignment explanation
Indices: 33364337--33364509 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
33364327 TGGTTGAGCA
33364337 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
33364383 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
33364430 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
33364476 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33364510 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:33364493 original size:93 final size:93
Alignment explanation
Indices: 33364334--33364504 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
33364324 GGATGGTTGA
*
33364334 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
33364399 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
* * *
33364427 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
33364492 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
33364505 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:33364771 original size:19 final size:20
Alignment explanation
Indices: 33364734--33364771 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33364724 ATAAGGTGGT
33364734 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
33364754 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
33364772 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:33372603 original size:40 final size:40
Alignment explanation
Indices: 33372476--33372603 Score: 168
Period size: 40 Copynumber: 3.2 Consensus size: 40
33372466 ATGCTGGAAA
* * *
33372476 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * *
33372516 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
33372556 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
33372596 TTATATCC
1 TTATATCC
33372604 AGTTATATTC
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:33379655 original size:41 final size:41
Alignment explanation
Indices: 33379605--33379687 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
33379595 AATTTACCAT
*
33379605 AGTCTCATGAGCATAATTCATTCTATCACCAAACTTACCTC
1 AGTCTCATGAGCATAATTCATTCCATCACCAAACTTACCTC
33379646 AGTCTCATGAGCATAATTCATTCCATCACCAAACTTACCTC
1 AGTCTCATGAGCATAATTCATTCCATCACCAAACTTACCTC
33379687 A
1 A
33379688 TTTTCATCAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (41 bp):
AGTCTCATGAGCATAATTCATTCCATCACCAAACTTACCTC
Found at i:33390664 original size:47 final size:45
Alignment explanation
Indices: 33390545--33390715 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
33390535 GGGATATTTG
* *
33390545 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGCGA
* *
33390592 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATG---CGA
*
33390638 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG-TGA-GGATGCG-A
* *
33390686 CGC--CC-AGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
33390716 ACTTATGGGC
Statistics
Matches: 107, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 4 0.04
45 26 0.24
46 35 0.33
47 33 0.31
48 5 0.05
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (45 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGA
Found at i:33398003 original size:29 final size:29
Alignment explanation
Indices: 33397971--33398071 Score: 166
Period size: 29 Copynumber: 3.5 Consensus size: 29
33397961 GCTTGGAAGG
33397971 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
33398000 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* **
33398029 TATGGCACTATGTGTGCGAACTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
33398058 CATGGCACTAAGTG
1 TATGGCACTAAGTG
33398072 CACGAGATCG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:33400812 original size:2 final size:2
Alignment explanation
Indices: 33400805--33400839 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
33400795 TCATGACATG
33400805 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
33400840 GACTAGTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:33405962 original size:40 final size:40
Alignment explanation
Indices: 33405900--33406117 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
33405890 AAACCAAGTA
* * ** * *
33405900 CCTTCGGGATTTA-ACCGGATATAGCCACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
33405939 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33405979 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
33406019 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* *
33406059 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
33406099 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33406118 TTATCATCCG
Statistics
Matches: 161, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 14 0.09
40 146 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33408740 original size:28 final size:28
Alignment explanation
Indices: 33408671--33408740 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
33408661 AATGAGATTG
*
33408671 GCACTAAGTGTGCAAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
*
33408699 GCACTAAGTGTGCGAGTTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
33408727 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
33408741 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 33 0.87
29 4 0.11
30 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:33427408 original size:25 final size:25
Alignment explanation
Indices: 33427358--33427408 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
33427348 CCCTTATAAT
* *
33427358 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCTTTATACCCCTAG
*
33427383 GTGAAAATGA-CTATTATACCCTTAG
1 GTGAAAATGACCT-TTATACCCCTAG
33427408 G
1 G
33427409 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCCTAG
Found at i:33427467 original size:10 final size:10
Alignment explanation
Indices: 33427452--33427486 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
33427442 TTTGTACATA
33427452 ATATGCCATG
1 ATATGCCATG
33427462 ATATGCACATG
1 ATATGC-CATG
33427473 ATATGCCATG
1 ATATGCCATG
33427483 ATAT
1 ATAT
33427487 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:33427471 original size:21 final size:21
Alignment explanation
Indices: 33427447--33427486 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
33427437 ACTGATTTGT
33427447 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
33427468 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
33427487 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:33427492 original size:21 final size:20
Alignment explanation
Indices: 33427446--33427498 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
33427436 TACTGATTTG
*
33427446 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
33427467 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
33427488 TACATATATGC
1 TACATATATGC
33427499 ACGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:33433636 original size:36 final size:37
Alignment explanation
Indices: 33433545--33433712 Score: 176
Period size: 36 Copynumber: 4.7 Consensus size: 37
33433535 TTGGATGATA
*
33433545 ACCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAAT
1 ACCGGGCTAAGT-CCGAAGGCATTTGTGC-AGTTACT-AT
* * *
33433584 TCCGGGCTAAGCCCGAAGGCATTTGTG-AGCTACTAT
1 ACCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTAT
33433620 ACCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTAT
1 ACCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTAT
*
33433657 ACCGGGCTATGTCCCGAAGGC------G-AGTTACTAT
1 ACCGGGCTAAGT-CCGAAGGCATTTGTGCAGTTACTAT
33433688 AACCGGGCT-AGTCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCGAAGGCATTTG
33433713 AGCAAGTAGC
Statistics
Matches: 111, Mismatches: 9, Indels: 22
0.78 0.06 0.15
Matches are distributed among these distances:
30 8 0.07
31 11 0.10
32 9 0.08
36 27 0.24
37 24 0.22
38 17 0.15
39 15 0.14
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (37 bp):
ACCGGGCTAAGTCCGAAGGCATTTGTGCAGTTACTAT
Found at i:33433677 original size:74 final size:70
Alignment explanation
Indices: 33433542--33433712 Score: 199
Period size: 68 Copynumber: 2.4 Consensus size: 70
33433532 TATTTGGATG
*
33433542 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTAATACCGGGCTAAGCCCGAAGGC--
33433606 TTGTGAGCTACT
63 ----GAGCTACT
* *
33433618 AT-ACCGGGCTAAGTCCGAAGGCATTTGTGC-AGTTACT-ATACCGGGCTATGTCCCGAAGGCGA
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTAATACCGGGCTAAG-CCCGAAGGCGA
*
33433680 GTTACT
65 GCTACT
33433686 ATAACCGGGCT-AGTCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCGAAGGCATTTG
33433713 AGCAAGTAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 14
0.83 0.04 0.13
Matches are distributed among these distances:
68 25 0.28
69 8 0.09
73 11 0.12
74 24 0.27
75 18 0.20
76 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (70 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTAATACCGGGCTAAGCCCGAAGGCGAG
CTACT
Found at i:33433706 original size:30 final size:31
Alignment explanation
Indices: 33433648--33433707 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
33433638 GCATTTGTGC
33433648 AGTTACTATACCGGGCTATGTCCCGAAGGCG
1 AGTTACTATACCGGGCTATGTCCCGAAGGCG
33433679 AGTTACTATAACCGGGCTA-GT-CCGAAGGC
1 AGTTACTAT-ACCGGGCTATGTCCCGAAGGC
33433708 ATTTGAGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 8 0.29
31 11 0.39
32 9 0.32
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (31 bp):
AGTTACTATACCGGGCTATGTCCCGAAGGCG
Found at i:33444677 original size:44 final size:44
Alignment explanation
Indices: 33444532--33444956 Score: 187
Period size: 44 Copynumber: 9.7 Consensus size: 44
33444522 CAAACCACCA
* * * * *
33444532 AGCTTTAA-CCCCTAAGCAGTAGGGTAACA-AGCTGATGTTCATA
1 AGCTTTAACCCCCTAAGCAGTAGGGAAACAGAGC-GAAGATGATG
* * * * *
33444575 AGATCTTAAACCCCTAAGAAGTAGGGTAACAGA-CCAA-AT--TG
1 AGCT-TTAACCCCCTAAGCAGTAGGGAAACAGAGCGAAGATGATG
* * * * *
33444616 CAGATCTTAATCCCCTAAGTAGTAGGGAAATAGATCGAAGATGATG
1 -AGCT-TTAACCCCCTAAGCAGTAGGGAAACAGAGCGAAGATGATG
* * * * **
33444662 GGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA
1 AGCTTTAACCCCCTAAGCAGTAGGGAAACAGAGCGAAGA-TGATG
* * * *
33444705 AGCCTTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTAC
1 AGCTTTAACCCCCTAAGCAGTAGGGAAACAGAGC-GAAGATGAT-G
* * * *
33444749 AGATCTTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGATGATG
1 AGCT-TTAACCCCCTAAGCAGTAGGGAAACAGAGCGAAGATGATG
* * * * **
33444794 GGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTAA-ATTTACA
1 AGCTTTAACCCCCTAAGCAGTAGGGAAACAGAGCGAAGA-TGATG
* * * * *
33444837 AGCCTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGAT-TTAC
1 AGCTTTAACCCCCTAAGCAGTAGGGAAACAGAGC-GAAGATGAT-G
* * * * *
33444881 AGATCTTAACCCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAG
1 AGCT-TTAACCCCCTAAGCAGTAG-GGAAACAGAGCGAAGATGATG
* * * *
33444926 AACCTTAAACCCCTAAGCAGTAGGGTAACAG
1 AGCTTTAACCCCCTAAGCAGTAGGGAAACAG
33444957 GTTGAATTGC
Statistics
Matches: 290, Mismatches: 66, Indels: 51
0.71 0.16 0.13
Matches are distributed among these distances:
41 1 0.00
42 31 0.11
43 80 0.28
44 85 0.29
45 85 0.29
46 8 0.03
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (44 bp):
AGCTTTAACCCCCTAAGCAGTAGGGAAACAGAGCGAAGATGATG
Found at i:33444722 original size:43 final size:42
Alignment explanation
Indices: 33444666--33444904 Score: 228
Period size: 43 Copynumber: 5.5 Consensus size: 42
33444656 ATGATGGGCT
33444666 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTAC-AGCC
* * *
33444709 TTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGC-CAA-ATTTACAG-CC
* * * * * ** *
33444754 TTAACCCTCTAAGCAGTAGGGAAAC-AGATCAAAGATGATGGGCT
1 TTAACCCCCTAAGCAGTAGGGTAACAAG-CCAAA-TTTA-CAGCC
*
33444798 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAATTTACAAGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTAC-AGCC
* * * *
33444841 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGC-CAA-ATTTACAG-CC
33444886 TTAACCCCCTAAGCAGTAG
1 TTAACCCCCTAAGCAGTAG
33444905 TGGAGCAGAT
Statistics
Matches: 157, Mismatches: 28, Indels: 20
0.77 0.14 0.10
Matches are distributed among these distances:
43 60 0.38
44 39 0.25
45 58 0.37
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (42 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGCC
Found at i:33444783 original size:132 final size:131
Alignment explanation
Indices: 33444533--33444955 Score: 561
Period size: 132 Copynumber: 3.2 Consensus size: 131
33444523 AAACCACCAA
** * * *
33444533 GCTTTAA-CCCCTAAGCAGTAGGGTAACAAG-CTGATGTTCATAAGATCTTAAACCCCTAAGAAG
1 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAAT-TT-ACAAG-CCTTAAACCCCTAAGCAG
* * * * *
33444596 TAGGGTAACAGAC-CAA-A-TTGCAGATCTTAATCCCCTAAGTAGTAGGGAAATAGATCGAAGAT
63 TAGGGTAACAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGAT
33444658 GATGG
127 GATGG
*
33444663 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAACCCCCTAAGCAGTAG
1 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAG
*
33444728 GGTAACAGGCTGAAGATTTACAGATCTTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGATGAT
66 GGTAACAGGCTGAAGATTTACAGATCTTAACCC-CTAAGCAGTAGGGAAACAGATCGAAGATGAT
33444793 GG
130 GG
*
33444795 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTAAATTTACAAGCCTTAAACCCCTAAGCAGTAG
1 GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAG
* *
33444860 GGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGA
66 GGTAACAGGCTGAAGATTTACAGATCTTAA-CCCCTAAGCAGTAG-GGAAACAGATCGAAGATGA
* *
33444924 AGA
129 TGG
* * *
33444927 ACCTTAAACCCCTAAGCAGTAGGGTAACA
1 GCTTTAACCCCCTAAGCAGTAGGGTAACA
33444956 GGTTGAATTG
Statistics
Matches: 263, Mismatches: 22, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
129 27 0.10
130 13 0.05
131 29 0.11
132 189 0.72
133 5 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (131 bp):
GCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAGCCTTAAACCCCTAAGCAGTAG
GGTAACAGGCTGAAGATTTACAGATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATG
G
Found at i:33444920 original size:45 final size:45
Alignment explanation
Indices: 33444536--33444956 Score: 297
Period size: 45 Copynumber: 9.6 Consensus size: 45
33444526 CCACCAAGCT
* *
33444536 TTAA-CCCCTAAGCAGTAGGGTAACA-AGCTGATG-TTCATA-AGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGC-GAAGATT--TACAGACC
* * * * *
33444580 TTAAACCCCTAAGAAGTAGGGTAACAGA-CCAA-A-TTGCAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGCGAAGATTTACAGACC
* * * * * * ** * *
33444622 TTAATCCCCTAAGTAGTAGGGAAATAGATCGAAGA-TGATGGGCT
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGCGAAGATTTACAGACC
*
33444666 TTAACCCCCTAAGCAGTAGGGTAACA-AGCCAA-ATTTACA-AGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGCGAAGATTTACAGA-CC
*
33444709 TTAACCCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGC-GAAGATTTACAGACC
* * * * * ** * *
33444754 TTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGA-TGATGGGCT
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGCGAAGATTTACAGACC
*
33444798 TTAACCCCCTAAGCAGTAGGGTAACA-AGCTAA-ATTTACA-AGCC
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGCGAAGATTTACAGA-CC
* *
33444841 TTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAGAGC-GAAGATTTACAGACC
* * **
33444886 TTAACCCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGA-AGAACC
1 TTAACCCCCTAAGCAGTAG-GGTAACAGAGCGAAGATTTACAG-ACC
*
33444930 TTAAACCCCTAAGCAGTAGGGTAACAG
1 TTAACCCCCTAAGCAGTAGGGTAACAG
33444957 GTTGAATTGC
Statistics
Matches: 295, Mismatches: 59, Indels: 46
0.74 0.15 0.12
Matches are distributed among these distances:
41 1 0.00
42 31 0.11
43 77 0.26
44 86 0.29
45 93 0.32
46 7 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (45 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGAGCGAAGATTTACAGACC
Found at i:33444998 original size:86 final size:88
Alignment explanation
Indices: 33444839--33445076 Score: 367
Period size: 86 Copynumber: 2.7 Consensus size: 88
33444829 AATTTACAAG
*
33444839 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-AGATTTACAGATCTTAACCCCCTAAGCAGTA
*
33444904 GTGGAGCAGATCGAAGACGAAGAA
65 GTGGAGCAGACCGAAGACGAAGAA
* * *
33444928 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA-A-TTGCAGATCTTATCTCCCTAAGCAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGATTTACAGATCTTAACCCCCTAAGCAGTAG
33444991 TGGAGCAGACCGAAGACGAAGAA
66 TGGAGCAGACCGAAGACGAAGAA
* **
33445014 CCTTAAACCCCTAAGCAGTAAGGTAACAGGTTGAG-TTTACAGATC-TAAAACCCTAAGCAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGATTTACAGATCTTAACCCCCTAAGCAGTAG
33445077 GGAAATAGAT
Statistics
Matches: 137, Mismatches: 10, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
86 95 0.69
87 9 0.07
88 1 0.01
89 32 0.23
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (88 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGATTTACAGATCTTAACCCCCTAAGCAGTAG
TGGAGCAGACCGAAGACGAAGAA
Found at i:33446518 original size:3 final size:3
Alignment explanation
Indices: 33446505--33446552 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
33446495 CTTTCGTAGC
*
33446505 ATT ATTT ATT ATT A-T ATT AATT GTT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
33446551 AT
1 AT
33446553 ATATATACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 32 0.80
4 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:33446594 original size:25 final size:24
Alignment explanation
Indices: 33446538--33446605 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
33446528 TTATTATTAT
*
33446538 TATTATTATTATTATATATATACATG
1 TATT-TTATTATTAT-TATATACATA
**
33446564 CCTTTTATTATTATTCATATACATA
1 TATTTTATTATTATT-ATATACATA
*
33446589 TATTTTAAATATTATTA
1 TATTTT-ATTATTATTA
33446606 CCATTATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 1 0.03
25 23 0.68
26 10 0.29
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.54
Consensus pattern (24 bp):
TATTTTATTATTATTATATACATA
Found at i:33446733 original size:25 final size:23
Alignment explanation
Indices: 33446705--33446750 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
33446695 TGTATAGTAT
*
33446705 TATTTTAATTACTTATTTACTATCA
1 TATTATAATTACTT-TTT-CTATCA
*
33446730 TATTATATTTACTTTTTCTAT
1 TATTATAATTACTTTTTCTAT
33446751 TTTAACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 3 0.16
25 12 0.63
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTATAATTACTTTTTCTATCA
Found at i:33450721 original size:37 final size:36
Alignment explanation
Indices: 33450667--33450741 Score: 105
Period size: 37 Copynumber: 2.1 Consensus size: 36
33450657 TCTTCCTTAC
* *
33450667 TTATCATTGAATTTGTGATACTTAAGAACCATAAAA
1 TTATCATTGAATCTGTGATACTTAAGAACAATAAAA
* *
33450703 TTATCAGTTGAATCTGTGATATTTAAGAACAATAGAA
1 TTATCA-TTGAATCTGTGATACTTAAGAACAATAAAA
33450740 TT
1 TT
33450742 GTGAAATTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
36 6 0.18
37 28 0.82
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.37
Consensus pattern (36 bp):
TTATCATTGAATCTGTGATACTTAAGAACAATAAAA
Found at i:33452589 original size:33 final size:33
Alignment explanation
Indices: 33452547--33452613 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
33452537 TAATTATATG
33452547 ATGAAACAAGTCAGTACCTGGTGATACAATTAT
1 ATGAAACAAGTCAGTACCTGGTGATACAATTAT
33452580 ATGAAACAAGTCAGTACCTGGTGATACAATTAT
1 ATGAAACAAGTCAGTACCTGGTGATACAATTAT
33452613 A
1 A
33452614 CTTCTTGTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (33 bp):
ATGAAACAAGTCAGTACCTGGTGATACAATTAT
Found at i:33454825 original size:15 final size:17
Alignment explanation
Indices: 33454795--33454836 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
33454785 TAATAAAAAT
33454795 ATAATTTTATTATTTTA
1 ATAATTTTATTATTTTA
*
33454812 ATAA-TTTA-TATTTTT
1 ATAATTTTATTATTTTA
33454827 ATAAATTTTA
1 AT-AATTTTA
33454837 AAAGATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATAATTTTATTATTTTA
Found at i:33454833 original size:16 final size:17
Alignment explanation
Indices: 33454794--33454834 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
33454784 ATAATAAAAA
*
33454794 TATAATTTTATTATTTT
1 TATAAATTTATTATTTT
*
33454811 AAT-AATTTA-TATTTT
1 TATAAATTTATTATTTT
33454826 TATAAATTT
1 TATAAATTT
33454835 TAAAAGATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 8 0.40
16 10 0.50
17 2 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATAAATTTATTATTTT
Found at i:33457787 original size:63 final size:62
Alignment explanation
Indices: 33457706--33457976 Score: 251
Period size: 63 Copynumber: 4.3 Consensus size: 62
33457696 AGATATAAGG
* * * *
33457706 GTCACACAGATGAGACACACGAGCATGTGTCTAGGTCATGTAACTCACTGAGTTCATATTAGA
1 GTCACACGGGTGAGACACACGAGCATGTGTCCAGG-CGTGTAACTCACTGAGTTCATATTAGA
* * * * *
33457769 GTCACACGGGTGAGACACACGGGCGTCTGTCCAAGCCGTGTAACTCAC-CAGGTTCATATTAGA
1 GTCACACGGGTGAGACACACGAGCATGTGTCC-AGGCGTGTAACTCACTGA-GTTCATATTAGA
* * * *
33457832 GTCACATGGGTGAGACACACGGGCATGTGTCCAGGC-CGTAACTTACTGAGTTCATATTAGA
1 GTCACACGGGTGAGACACACGAGCATGTGTCCAGGCGTGTAACTCACTGAGTTCATATTAGA
* * * * * * * *
33457893 GTCACACAGGTGAGATATA-GATGCGTGTGTCTAGGCTGTGTGACTCACTGAGTTTATATTTGA
1 GTCACACGGGTGAGACACACGA-GCATGTGTCCAGGC-GTGTAACTCACTGAGTTCATATTAGA
* * * *
33457956 GACAAACGGGTAAGGCACACG
1 GTCACACGGGTGAGACACACG
33457977 GTGTGTGCCA
Statistics
Matches: 166, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
60 1 0.01
61 47 0.28
62 5 0.03
63 110 0.66
64 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (62 bp):
GTCACACGGGTGAGACACACGAGCATGTGTCCAGGCGTGTAACTCACTGAGTTCATATTAGA
Found at i:33457975 original size:124 final size:124
Alignment explanation
Indices: 33457718--33457992 Score: 281
Period size: 124 Copynumber: 2.2 Consensus size: 124
33457708 CACACAGATG
* * * *
33457718 AGACACACGAGCATGTGTCTAGGTCATGTAACTCACTGAGTTCATATTAGAGTCACACGGGTGAG
1 AGACACACGGGCATGTGTCCAGG-C-CGTAACTCACTGAGTTCATATTAGAGTCACACAGGTGAG
* * * *
33457783 ACACACGGGCGTCTGTCCAAGCCGTGTAACTCACCAGGTTCATATTAGAGTCACATGGGTG
64 ACACACGGGCGTCTGTCCAAGCCGTGTAACTCACCAGGTTCATATTAGAGACAAACGGGTA
* *
33457844 AGACACACGGGCATGTGTCCAGGCCGTAACTTACTGAGTTCATATTAGAGTCACACAGGTGAGAT
1 AGACACACGGGCATGTGTCCAGGCCGTAACTCACTGAGTTCATATTAGAGTCACACAGGTGAGAC
* * * * * * * * * *
33457909 ATA-GATGCGTGTGTCTAGGCTGTGTGACTCA-CTGAGTTTATATTTGAGACAAACGGGTA
66 ACACG-GGCGTCTGTCCAAGCCGTGTAACTCACCAG-GTTCATATTAGAGACAAACGGGTA
*
33457968 AGGCACAC-GG--TGTGTGCCAGGCCGT
1 AGACACACGGGCATGTGT-CCAGGCCGT
33457993 GTGGACGTGT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
121 5 0.04
122 9 0.07
123 5 0.04
124 84 0.67
125 1 0.01
126 21 0.17
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (124 bp):
AGACACACGGGCATGTGTCCAGGCCGTAACTCACTGAGTTCATATTAGAGTCACACAGGTGAGAC
ACACGGGCGTCTGTCCAAGCCGTGTAACTCACCAGGTTCATATTAGAGACAAACGGGTA
Found at i:33458631 original size:21 final size:21
Alignment explanation
Indices: 33458601--33458648 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
33458591 ACAGGGTTCA
* *
33458601 CACGCACGTGTGGTTATAGGG
1 CACGCCCGTGTGGGTATAGGG
*
33458622 CACGCCCGTGTGGGTATGGGG
1 CACGCCCGTGTGGGTATAGGG
33458643 CACGCC
1 CACGCC
33458649 ATGTGGTCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.27, G:0.40, T:0.19
Consensus pattern (21 bp):
CACGCCCGTGTGGGTATAGGG
Found at i:33479459 original size:43 final size:42
Alignment explanation
Indices: 33479314--33479464 Score: 187
Period size: 43 Copynumber: 3.5 Consensus size: 42
33479304 TATCCTAGAT
* *
33479314 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-GATGCCAATGTCCCAGAC
* * *
33479357 ATGGTCTTACACG-AACTCATATGACGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAA-TCACAT-ATGATGCCAATGTCCCAGAC
*
33479400 ATGGTCTTACACGTAATCACAATATGATTCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCAC-ATATGATGCCAATGTCCCAGAC
* *
33479443 ATGGTCTTACATGTAATTACAT
1 ATGGTCTTACACGTAATCACAT
33479465 CTCGGTAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
42 3 0.03
43 85 0.91
44 5 0.05
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCACATATGATGCCAATGTCCCAGAC
Found at i:33484176 original size:48 final size:47
Alignment explanation
Indices: 33484069--33484280 Score: 214
Period size: 46 Copynumber: 4.5 Consensus size: 47
33484059 TATGTGTGCT
* * * * *
33484069 AGTGTAAGACATGTCTGGGATATGCATCGGCCAC-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAT-AAAGCC
*
33484115 AGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATA-AAGCC
* * * * ** * *
33484163 AGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAAGCC
*
33484209 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATA-AAGCC
* * *
33484257 AGTGTAAGACTTGCCTAGGACATG
1 AGTGTAAGACATGTCTGGGACATG
33484281 GCGTCAGCTT
Statistics
Matches: 136, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
46 67 0.49
47 4 0.03
48 65 0.48
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAAGCC
Found at i:33484230 original size:94 final size:92
Alignment explanation
Indices: 33484069--33484280 Score: 291
Period size: 94 Copynumber: 2.3 Consensus size: 92
33484059 TATGTGTGCT
* *
33484069 AGTGTAAGACATGTCTGGGATATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCTAGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTACGAGAGCCAGTGTAAGACATGTCTAGG
33484134 ACATGCATCAGCCTCGAGATATACAAGCC
64 ACATGCATCAGCCTCGAGATATACAAGCC
* * *
33484163 AGTGTAAGACATGTTTGGGACATGCATCGG-CATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATT---ACGAGAGCCAGTGTAAGACATGTCTAG
*
33484227 GACATGCATCAGCCTCGAGATATACAAGCT
63 GACATGCATCAGCCTCGAGATATACAAGCC
* * *
33484257 AGTGTAAGACTTGCCTAGGACATG
1 AGTGTAAGACATGTCTGGGACATG
33484281 GCGTCAGCTT
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
91 4 0.04
94 101 0.96
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATTACGAGAGCCAGTGTAAGACATGTCTAGGAC
ATGCATCAGCCTCGAGATATACAAGCC
Found at i:33504913 original size:46 final size:46
Alignment explanation
Indices: 33504861--33505073 Score: 261
Period size: 46 Copynumber: 4.6 Consensus size: 46
33504851 TATTTGGGCA
33504861 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
33504907 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
33504953 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
33505000 TCCGAACTCGTTAAGTTGAGTCCGAGTT-ATCTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-CTTATGGATGCGAACG
* * *
33505046 CCCGAGCTCATTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
33505074 TGCCTATGGG
Statistics
Matches: 140, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 105 0.75
47 33 0.24
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:33516787 original size:43 final size:43
Alignment explanation
Indices: 33516729--33516930 Score: 185
Period size: 43 Copynumber: 4.7 Consensus size: 43
33516719 CAATGTCATA
* * * *
33516729 TCCCAGATATAGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * *** * * *
33516772 TCCCAAACAGGGTCTTATAAAAAATCAAATAAT-GATACCAATA
1 TCCCAGACATGGTCTTACATGTAATCACAT-ATCGATGCCAATG
* * * *
33516815 TCCTAGACATGGTCTTACACGTAATCACA-ATACAATGCCAATT
1 TCCCAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATG
* *
33516858 TCCCAGACATGATCTTACATGTAATCACA-ATAGAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCG-ATGCCAATG
33516901 TCCCAGACATGGTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACATGTAATCACAT
33516931 CTCGGAAATC
Statistics
Matches: 123, Mismatches: 31, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
41 2 0.02
43 119 0.97
44 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:33516874 original size:86 final size:87
Alignment explanation
Indices: 33516726--33516929 Score: 209
Period size: 86 Copynumber: 2.4 Consensus size: 87
33516716 GTACAATGTC
* * * * * * *
33516726 ATATCCCAGATATAGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCAAACAGGGTCTTAT
1 ATATCCCAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAAACAGGATCTTAC
33516790 AAAAAATCA-AATA-ATGATACCA
66 AAAAAATCACAATAGA--ATACCA
* * * * *
33516812 ATATCCTAGACATGGTCTTACACGTAATCACAATA-CAATGCCAATTTCCCAGACATGATCTTAC
1 ATATCCCAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAAACAGGATCTTAC
*** *
33516876 ATGTAATCACAATAGAATGCCA
66 AAAAAATCACAATAGAATACCA
*
33516898 ATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATATCCCAGACATGGTCTTACATGTAATCACA
33516930 TCTCGGAAAT
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
86 88 0.92
87 7 0.07
88 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (87 bp):
ATATCCCAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAAACAGGATCTTAC
AAAAAATCACAATAGAATACCA
Found at i:33523188 original size:40 final size:40
Alignment explanation
Indices: 33523129--33523336 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
33523119 CAATTGAATG
* * * *
33523129 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
33523169 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
33523209 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33523249 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
33523289 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
33523329 ATATCCGG
1 ATATCCGG
33523337 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:33523267 original size:80 final size:80
Alignment explanation
Indices: 33523131--33523336 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
33523121 ATTGAATGAT
* * ** * * *
33523131 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
33523195 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
33523211 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
33523276 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
33523291 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
33523337 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:33531239 original size:40 final size:40
Alignment explanation
Indices: 33531180--33531387 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
33531170 CAATTGAATG
* * * *
33531180 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
33531220 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
33531260 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33531300 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
33531340 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
33531380 ATATCCGG
1 ATATCCGG
33531388 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:33531318 original size:80 final size:80
Alignment explanation
Indices: 33531182--33531387 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
33531172 ATTGAATGAT
* * ** * * *
33531182 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
33531246 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
33531262 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
33531327 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
33531342 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
33531388 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:33540014 original size:39 final size:39
Alignment explanation
Indices: 33539971--33540048 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
33539961 TTTTCAGAGG
33539971 TTTCAGTCCCTAACTATTTCAGTATAGCCTCAGAAAGTA
1 TTTCAGTCCCTAACTATTTCAGTATAGCCTCAGAAAGTA
33540010 TTTCAGTCCCTAACTATTTCAGTATAGCCTCAGAAAGTA
1 TTTCAGTCCCTAACTATTTCAGTATAGCCTCAGAAAGTA
33540049 CTAACTACAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (39 bp):
TTTCAGTCCCTAACTATTTCAGTATAGCCTCAGAAAGTA
Done.