Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 118 of 770
Found at i:33980057 original size:42 final size:42
Alignment explanation
Indices: 33980010--33980116 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
33980000 TATTGGTCTC
33980010 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
33980052 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
33980094 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
33980117 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:33980181 original size:27 final size:28
Alignment explanation
Indices: 33980124--33980193 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
33980114 AAAATTGTAC
**
33980124 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
33980152 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
33980179 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
33980194 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:33987288 original size:42 final size:42
Alignment explanation
Indices: 33987241--33987347 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
33987231 TATTGGTCTC
33987241 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
33987283 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
33987325 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
33987348 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:33987412 original size:27 final size:28
Alignment explanation
Indices: 33987355--33987424 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
33987345 AAAATTGTAC
**
33987355 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
33987383 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
33987410 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
33987425 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:33994641 original size:40 final size:40
Alignment explanation
Indices: 33994564--33994780 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
33994554 AAACCAAGTA
* * * *
33994564 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
33994603 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33994643 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
33994683 CCTTCGGGACTTAGCCCGGATATAGTAACTTTCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
33994723 CCTTCGGG-CTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
33994762 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33994781 TTATCATCCG
Statistics
Matches: 159, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 46 0.29
40 112 0.70
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33996914 original size:42 final size:42
Alignment explanation
Indices: 33996840--33996966 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
33996830 TGGGATCTCG
* * *
33996840 TATCGATGCCAATAGCCCAGCTATGGTTTTACACGAAG-CTTCA
1 TATCGATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTT-A
* *
33996883 TATCGATGTCATATCCCAGATATGGTCTTACATGAAGTCTTA
1 TATCGATGCCATATCCCAGATATGGTCTTACACGAAGTCTTA
*
33996925 TATTGATGCCATATCCCAGATATGGTCTTACACGTAA-TCTTA
1 TATCGATGCCATATCCCAGATATGGTCTTACACG-AAGTCTTA
33996967 GTGACCTTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 60 0.81
43 14 0.19
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (42 bp):
TATCGATGCCATATCCCAGATATGGTCTTACACGAAGTCTTA
Found at i:34014193 original size:29 final size:29
Alignment explanation
Indices: 34014161--34014231 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
34014151 TCGAGCTCGT
*
34014161 ACACCCAGTGCCGTATATTTCCAGCATGC
1 ACACCCAGTGCCATATATTTCCAGCATGC
**
34014190 ACACTTAGTGCCATATATTTCCAGCATGC
1 ACACCCAGTGCCATATATTTCCAGCATGC
**
34014219 ACACTTAGTGCCA
1 ACACCCAGTGCCA
34014232 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
ACACCCAGTGCCATATATTTCCAGCATGC
Found at i:34022369 original size:52 final size:50
Alignment explanation
Indices: 34022252--34022429 Score: 225
Period size: 52 Copynumber: 3.5 Consensus size: 50
34022242 ACTAGTGACT
* * * *
34022252 CAAGTGTGGTACTATGTGAAAGCCACTTTGAGAAG-AGATAGCTTGGTCA
1 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGTTTGGTCA
34022301 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGTTTTGGTCA
1 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAG-TTTGGTCA
* *
34022353 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAG-TTTGGTC-A
** *
34022404 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTATGGTACTATGTGAAGGCCAC
34022430 CGGGTATCTG
Statistics
Matches: 115, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
49 32 0.28
50 2 0.02
51 39 0.34
52 42 0.37
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (50 bp):
CAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGTTTGGTCA
Found at i:34022428 original size:51 final size:51
Alignment explanation
Indices: 34022247--34022429 Score: 221
Period size: 51 Copynumber: 3.6 Consensus size: 51
34022237 ATGTCACTAG
* * *
34022247 TGACT-CAAGTGTGGTACTATGTGAAAGCCACTTTGAGAAG-AGATAGCTT
1 TGACTACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* * *
34022296 GGTC-ACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGTTT
1 TGACTACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTT
* *
34022347 TG-GTCACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTT
1 TGACT-ACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
** *
34022398 TGACTACAAGGGTGGTACTATGTGCAGGCCAC
1 TGACTACAAGTATGGTACTATGTGAAGGCCAC
34022430 CGGGTATCTG
Statistics
Matches: 114, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
49 34 0.30
51 43 0.38
52 37 0.32
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (51 bp):
TGACTACAAGTATGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
Found at i:34024400 original size:136 final size:136
Alignment explanation
Indices: 34024154--34024468 Score: 407
Period size: 136 Copynumber: 2.3 Consensus size: 136
34024144 TTTGACATGA
* * * * * *
34024154 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT-A-GGTGCCATGGTATCTTTCAA
** * ***
34024218 CCATGGTCTTATTCATTTCATGTCACGATGCCATGGTATCTTTCAACCATGGTCTTATTTATTTC
63 CCATGGTCTTACACATTTCATATCACGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
* * *
34024283 CCGGCATGT
128 ACAGCAGGT
*
34024292 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATAGGTGCCATGGTATCTTTCAACCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATAGGTGCCATGGTATCTTTCAACCA
* * * *
34024357 TGGTCTTACACGTTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
66 TGGTCTTACACATTTCATATCACGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACA
*
34024422 TCAGGT
131 GCAGGT
34024428 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
34024469 CAGAGAGCAC
Statistics
Matches: 154, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
136 119 0.77
137 5 0.03
138 30 0.19
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (136 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATAGGTGCCATGGTATCTTTCAACCA
TGGTCTTACACATTTCATATCACGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACA
GCAGGT
Found at i:34024471 original size:46 final size:46
Alignment explanation
Indices: 34024154--34024471 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
34024144 TTTGACATGA
* * * * * *
34024154 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
34024200 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*** **** *
34024246 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGGCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
34024292 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATAT-AGG-
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
34024336 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
34024382 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
34024428 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
34024472 AGAGCACACT
Statistics
Matches: 246, Mismatches: 23, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
44 41 0.17
45 9 0.04
46 196 0.80
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:34024501 original size:136 final size:135
Alignment explanation
Indices: 34024246--34024502 Score: 286
Period size: 136 Copynumber: 1.9 Consensus size: 135
34024236 CATGTCACGA
*** * * *
34024246 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGGCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACAGCAGGTTGCCATGGTATCTTTCAAC
* * * * *** **
34024311 CATGGTCTTACACGTTTCATATAGGTGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATA
66 CATGGTCTTACACATTTCATATAGGAGCCA-GCTACCCGGCAACCATCATCTTACACGTTTCATA
34024376 TCAGGC
130 TCAGGC
* *
34024382 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACAGCAGGTTGCCATGGTATCTTTCAAC
*
34024447 CATGGTCTTACACATTTCATATCAGAGAGCACA-CT-CCCGGGAACC-TCATCCTTACA
66 CATGGTCTTACACATTTCATAT-AG-GAGC-CAGCTACCCGGCAACCATCAT-CTTACA
34024503 GTGGGATTAC
Statistics
Matches: 99, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
135 2 0.02
136 89 0.90
137 3 0.03
138 3 0.03
139 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (135 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACAGCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATAGGAGCCAGCTACCCGGCAACCATCATCTTACACGTTTCATAT
CAGGC
Found at i:34026592 original size:18 final size:20
Alignment explanation
Indices: 34026577--34026613 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34026567 TAATAATAAA
*
34026577 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
34026597 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
34026614 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:34027541 original size:48 final size:48
Alignment explanation
Indices: 34027470--34027652 Score: 206
Period size: 48 Copynumber: 3.8 Consensus size: 48
34027460 GGGTGTTACA
* *
34027470 CCATGTCCCAAACATGGACTTACACTAGCACACATATCAACGCTGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATG
* * * * *** * *
34027518 CCATGTCCCAGACATGGTCTTACACTATCTCTCATAAT-GTGGCGGATA
1 CCATGTCCCAAACATGGTCTTACACTAGCACACAT-ATCAACGCCGATG
* * **
34027566 CCATGTTCCAAACATTGTCTTACACTAGCATGCATATCAACGCCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATG
*
34027614 CCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 CCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
34027653 CCCAATTGCC
Statistics
Matches: 106, Mismatches: 27, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
47 2 0.02
48 102 0.96
49 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (48 bp):
CCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCGATG
Found at i:34031160 original size:47 final size:47
Alignment explanation
Indices: 34031107--34031770 Score: 1139
Period size: 47 Copynumber: 14.1 Consensus size: 47
34031097 TTAGGATTTT
34031107 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
34031154 ATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAATGACTA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
34031201 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
34031248 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
34031295 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
34031342 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
34031389 ATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
34031436 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
34031483 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
34031530 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* *
34031577 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
34031624 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
34031671 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
34031718 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
34031765 ATGTGA
1 ATGTGA
34031771 AATATATATA
Statistics
Matches: 580, Mismatches: 37, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 580 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34031855 original size:48 final size:48
Alignment explanation
Indices: 34031740--34032022 Score: 440
Period size: 48 Copynumber: 5.8 Consensus size: 48
34031730 TGAACATGCA
* * * *
34031740 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGGGATATG
1 TATATGTGGTAAAGCCGAATGGATAGTGTG-AA-ATATGTATGAGATATG
*
34031790 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTATGAGATATG
* *
34031838 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATATATATGGGATATG
1 TATATGTGGTAAAGCCGAATGGATAGTGTG-AA-ATATGTATGAGATATG
* * *
34031888 TATATGTGGTAAACCCGAATGGCTAGTCTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTATGAGATATG
34031936 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTATGAGATATG
34031984 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTA
34032023 GGCGATGTGC
Statistics
Matches: 217, Mismatches: 14, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
48 141 0.65
49 6 0.03
50 70 0.32
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATGTATGAGATATG
Found at i:34032038 original size:98 final size:98
Alignment explanation
Indices: 34031740--34032022 Score: 489
Period size: 98 Copynumber: 2.9 Consensus size: 98
34031730 TGAACATGCA
* *
34031740 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGGGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATATATATGGGATATGTATATGTGGTAAAGC
34031805 CGAATGGCTAGTGTGAAATATGTATGAGATATG
66 CGAATGGCTAGTGTGAAATATGTATGAGATATG
*
34031838 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATATATATGGGATATGTATATGTGGTAAACC
1 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATATATATGGGATATGTATATGTGGTAAAGC
*
34031903 CGAATGGCTAGTCTGAAATATGTATGAGATATG
66 CGAATGGCTAGTGTGAAATATGTATGAGATATG
* *
34031936 TATATGTGGTAAAGCCGAATGGATAGTGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATATATATGGGATATGTATATGTGGTAAAGC
*
34031999 CGAATGGATAGTGTGAAATATGTA
66 CGAATGGCTAGTGTGAAATATGTA
34032023 GGCGATGTGC
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
96 50 0.28
97 2 0.01
98 124 0.70
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGATAGTGTGAAATATATATATGGGATATGTATATGTGGTAAAGC
CGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:34032038 original size:146 final size:148
Alignment explanation
Indices: 34031740--34032019 Score: 492
Period size: 146 Copynumber: 1.9 Consensus size: 148
34031730 TGAACATGCA
* * *
34031740 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGGGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAACCCGAATGGCTAATCTGAAATATATATATGAGATATGTATATGTGGTAAAGC
*
34031805 CGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGATAGTGTGAA
66 CGAATGGATAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGATAGTGTGAA
34031870 ATATATATATGGGATATG
131 ATATATATATGGGATATG
* *
34031888 TATATGTGGTAAACCCGAATGGCTAGTCTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGC
1 TATATGTGGTAAACCCGAATGGCTAATCTGAAATATATATATGAGATATGTATATGTGGTAAAGC
34031951 CGAATGGATAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGATAGTGTGAA
66 CGAATGGATAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGATAGTGTGAA
34032016 ATAT
131 ATAT
34032020 GTAGGCGATG
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
146 97 0.77
147 2 0.02
148 27 0.21
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (148 bp):
TATATGTGGTAAACCCGAATGGCTAATCTGAAATATATATATGAGATATGTATATGTGGTAAAGC
CGAATGGATAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGATAGTGTGAA
ATATATATATGGGATATG
Found at i:34032221 original size:37 final size:37
Alignment explanation
Indices: 34032171--34032318 Score: 224
Period size: 37 Copynumber: 4.0 Consensus size: 37
34032161 AAATATATTT
34032171 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
34032208 CGGGTAAGACCCGATGACTACGTGTGAAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
34032245 TGGGTAAGACCCGTTGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * * *
34032282 CGGGTAAGACTCGATAACTTCGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
34032319 TGAGCTAAAG
Statistics
Matches: 101, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:34037709 original size:43 final size:47
Alignment explanation
Indices: 34037648--34037810 Score: 135
Period size: 48 Copynumber: 3.6 Consensus size: 47
34037638 TACCCGAAAA
* * *
34037648 CTCGCACACTTAGTGCCAA-A-TA-A-ATAGCCGAATCTATATCAAT
1 CTCGCACACTAAGTGCCAATAGTATATATAGCAGAAGCTATATCAAT
* *
34037691 CTCGCACACTAAGTGCCAATATGTATATATAGCAGGAGCTATCTCAAT
1 CTCGCACACTAAGTGCCAATA-GTATATATAGCAGAAGCTATATCAAT
* * * **
34037739 CACGCACACTAAGTGCCAATA-TATGTATATAACTGAAG-T-TATCTGGT
1 CTCGCACACTAAGTGCCAATAGTA--TATATAGCAGAAGCTATATC-AAT
*
34037786 CTCGCACACTTAGTGCCAATA-TATA
1 CTCGCACACTAAGTGCCAATAGTATA
34037811 ACTGAATCAT
Statistics
Matches: 98, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 18 0.18
44 1 0.01
45 2 0.02
46 7 0.07
47 24 0.24
48 46 0.47
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (47 bp):
CTCGCACACTAAGTGCCAATAGTATATATAGCAGAAGCTATATCAAT
Found at i:34037808 original size:47 final size:48
Alignment explanation
Indices: 34037681--34037810 Score: 154
Period size: 48 Copynumber: 2.7 Consensus size: 48
34037671 ATAGCCGAAT
* * * *
34037681 CTATATCAATCTCGCACACTAAGTGCCAATATGTATATATAGCAGGAG
1 CTATCTCAATCTCGCACACTAAGTGCCAATATATATATATAACAGAAG
* * *
34037729 CTATCTCAATCACGCACACTAAGTGCCAATATATGTATATAACTGAAG
1 CTATCTCAATCTCGCACACTAAGTGCCAATATATATATATAACAGAAG
* ** *
34037777 TTATCT-GGTCTCGCACACTTAGTGCCAATATATA
1 CTATCTCAATCTCGCACACTAAGTGCCAATATATA
34037811 ACTGAATCAT
Statistics
Matches: 69, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 23 0.33
48 46 0.67
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (48 bp):
CTATCTCAATCTCGCACACTAAGTGCCAATATATATATATAACAGAAG
Found at i:34040016 original size:25 final size:25
Alignment explanation
Indices: 34039988--34040039 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
34039978 CTTATCACAT
*
34039988 AAAACATTTAAAATCAAATTCATTC
1 AAAACATTTAAAATCAAATTAATTC
*
34040013 AAAACATTTATAATCAAATTAATTC
1 AAAACATTTAAAATCAAATTAATTC
34040038 AA
1 AA
34040040 TTAGCTCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (25 bp):
AAAACATTTAAAATCAAATTAATTC
Found at i:34040458 original size:43 final size:41
Alignment explanation
Indices: 34040309--34040464 Score: 141
Period size: 42 Copynumber: 3.7 Consensus size: 41
34040299 AGCACGTACA
* * *
34040309 ATGCCAACATCCCAGACCTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAA-ATCG
* ** * * ***
34040351 ATACCAGTGTCCCAGACAAGGTTTTACATAAAATCAAATACG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAAT-CG
* * *
34040393 ATGCCTATGTCCTAGACATGGTCTTACACGTAATCTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAA--TCAAATCG
*
34040436 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
34040465 AACAACTCAT
Statistics
Matches: 89, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
41 2 0.02
42 54 0.61
43 27 0.30
44 6 0.07
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATCG
Found at i:34052257 original size:13 final size:13
Alignment explanation
Indices: 34052239--34052263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34052229 GACGGACATA
34052239 GACACGGCCGTGC
1 GACACGGCCGTGC
34052252 GACACGGCCGTG
1 GACACGGCCGTG
34052264 TACACCAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:34056676 original size:40 final size:39
Alignment explanation
Indices: 34056631--34056758 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 39
34056621 CGGAATATAA
34056631 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCAC-AATGCCTTCGGGTCTTAGC
* *
34056671 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCAC-AATGCCTTCGGGTCTTAGC
* *
34056711 CCGGATAT-AGC-CGCTAGCACAATGCCTTC-GGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAATGCCTTCGGGTCTTAGC
34056749 CCGGATATAA
1 CCGGATATAA
34056759 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
38 17 0.23
39 11 0.15
40 44 0.59
41 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAAGCATGTGCACAATGCCTTCGGGTCTTAGC
Found at i:34056753 original size:38 final size:40
Alignment explanation
Indices: 34056647--34056795 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 40
34056637 ATAAGCATGT
* * *
34056647 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACGACTA
* *
34056687 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCG-CTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTA
* *** *
34056727 GCAC-AATGCCTTC-GGTCTTAACCCGGATATAATTTCCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACGACTA
* * *
34056765 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
34056796 CATTCAATTT
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 22 0.24
39 29 0.32
40 39 0.43
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACGACTA
Found at i:34069201 original size:66 final size:68
Alignment explanation
Indices: 34069125--34069311 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
34069115 TAGTACCACT
*
34069125 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
34069187 CACG
65 CACG
34069191 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
34069256 ATCACG
63 ATCACG
34069262 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
34069312 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:34069236 original size:71 final size:71
Alignment explanation
Indices: 34069148--34069311 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
34069138 CGATTTGTCT
34069148 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
34069213 CTTTCA
66 CTTTCA
34069219 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
34069284 CTTTCA
66 CTTTCA
34069290 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
34069312 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:34069349 original size:71 final size:70
Alignment explanation
Indices: 34069148--34069345 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
34069138 CGATTTGTCT
* * *
34069148 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
34069213 CTTTCA
65 CTTTCA
* * *
34069219 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
34069284 CTTTCA
65 CTTTCA
* *
34069290 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
34069346 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:34073742 original size:30 final size:29
Alignment explanation
Indices: 34073699--34073762 Score: 119
Period size: 30 Copynumber: 2.2 Consensus size: 29
34073689 CAAGTAGCTG
34073699 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
34073728 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
34073758 AAGCT
1 AAGCT
34073763 TCCAATTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:34081976 original size:40 final size:40
Alignment explanation
Indices: 34081917--34082123 Score: 191
Period size: 40 Copynumber: 5.2 Consensus size: 40
34081907 CAATTGAATG
* * * *
34081917 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
34081957 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
34081997 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
34082037 AAATCC-GGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * * **
34082076 CTATCCAGGCTAAGACCCGAAGACATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
34082116 ATATCCGG
1 ATATCCGG
34082124 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 34 0.25
40 104 0.75
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:34090064 original size:80 final size:80
Alignment explanation
Indices: 34089923--34090129 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
34089913 AATTGAATGA
* ** * * * *
34089923 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCTGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
34089988 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * * *
34090001 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
34090066 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* * *
34090083 TATCCAGGCTAAGACCCGAAGACATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTATATCCGG
34090130 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
80 102 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:34090114 original size:40 final size:40
Alignment explanation
Indices: 34089924--34090129 Score: 173
Period size: 40 Copynumber: 5.2 Consensus size: 40
34089914 ATTGAATGAT
* * ** * ** *
34089924 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
* * * * *
34089964 ATCCGGGTTAAGACCTGAAGGCAATT-GTGCTAGT-GACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TTAA
*
34090004 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
* * **
34090044 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
* * * * *
34090084 ATCCAGGCTAAGACCCGAAGACATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
34090124 ATCCGG
1 ATCCGG
34090130 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.02
40 129 0.95
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
Found at i:34093213 original size:28 final size:28
Alignment explanation
Indices: 34093181--34093235 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
34093171 CATAGGCACG
34093181 AAAAATAATATTAAAATATTTTATAACA
1 AAAAATAATATTAAAATATTTTATAACA
*
34093209 AAAAATAATATTAAAATATTTTCTAAC
1 AAAAATAATATTAAAATATTTTATAAC
34093236 TCAAATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.36
Consensus pattern (28 bp):
AAAAATAATATTAAAATATTTTATAACA
Found at i:34094029 original size:38 final size:38
Alignment explanation
Indices: 34093987--34094318 Score: 303
Period size: 38 Copynumber: 8.7 Consensus size: 38
34093977 GAAAATGAAA
*
34093987 TACTGAATATATTGAATGTTGCTCAATCGAGCAAAATC
1 TACTGAATATACTGAATGTTGCTCAATCGAGCAAAATC
* *
34094025 TACTGAATATACTAAATGTCGCTCAATCGAGCAAAATC
1 TACTGAATATACTGAATGTTGCTCAATCGAGCAAAATC
* * * * *
34094063 TACTAAACACAC-CAAGTGTTGCTCAATCGAGCAAAACC
1 TACTGAATATACTGAA-TGTTGCTCAATCGAGCAAAATC
* * * * *
34094101 TACCGAATATA-TCAAATGTTGCTCAATTGATCAAATTC
1 TACTGAATATACT-GAATGTTGCTCAATCGAGCAAAATC
*
34094139 TACTGAATATACTGAATGTTGCTCAATCCAGCAAAATC
1 TACTGAATATACTGAATGTTGCTCAATCGAGCAAAATC
* * * * *
34094177 TACTGAACACACTGAATGTTGTTCAATCAAGCAAAACC
1 TACTGAATATACTGAATGTTGCTCAATCGAGCAAAATC
* * * * * *
34094215 TA-TCGAATATACCGAATTTTTCTCAATCAAGTAAAACC
1 TACT-GAATATACTGAATGTTGCTCAATCGAGCAAAATC
* * *
34094253 TACTAAAATATATTGAATGTTGTTCAATCGAGCAAAAGTTC
1 TACT-GAATATACTGAATGTTGCTCAATCGAGCAAAA--TC
* * *
34094294 T-CTGATTATACTGAGTATTGCTCAA
1 TACTGAATATACTGAATGTTGCTCAA
34094319 AGGAAAGTTA
Statistics
Matches: 234, Mismatches: 52, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
37 3 0.01
38 183 0.78
39 44 0.19
40 2 0.01
41 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.30
Consensus pattern (38 bp):
TACTGAATATACTGAATGTTGCTCAATCGAGCAAAATC
Found at i:34094197 original size:114 final size:114
Alignment explanation
Indices: 34093991--34094289 Score: 339
Period size: 114 Copynumber: 2.6 Consensus size: 114
34093981 ATGAAATACT
** *
34093991 GAATATATTGAATGTTGCTCAATCGAGCAAAATCTACTGAATATACTAAATGTCGCTCAATCGAG
1 GAATATATCAAATGTTGCTCAATCGAGCAAAATCTACTGAATATACTAAATGTCGCTCAATCCAG
*
34094056 CAAAATCTACTAAACACACCAAGTGTTGCTCAATCGAGCAAAACCTACC
66 CAAAATCTACTAAACACACCAAGTGTTGCTCAATCAAGCAAAACCTACC
* * * * *
34094105 GAATATATCAAATGTTGCTCAATTGATCAAATTCTACTGAATATACTGAATGTTGCTCAATCCAG
1 GAATATATCAAATGTTGCTCAATCGAGCAAAATCTACTGAATATACTAAATGTCGCTCAATCCAG
* * * *
34094170 CAAAATCTACTGAACACACTGAA-TGTTGTTCAATCAAGCAAAACCTATC
66 CAAAATCTACTAAACACAC-CAAGTGTTGCTCAATCAAGCAAAACCTACC
* * * * * * * * * * * * *
34094219 GAATATACCGAATTTTTCTCAATCAAGTAAAACCTACTAAAATATATTGAATGTTGTTCAATCGA
1 GAATATATCAAATGTTGCTCAATCGAGCAAAATCTACT-GAATATACTAAATGTCGCTCAATCCA
34094284 GCAAAA
65 GCAAAA
34094290 GTTCTCTGAT
Statistics
Matches: 156, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
114 126 0.81
115 30 0.19
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (114 bp):
GAATATATCAAATGTTGCTCAATCGAGCAAAATCTACTGAATATACTAAATGTCGCTCAATCCAG
CAAAATCTACTAAACACACCAAGTGTTGCTCAATCAAGCAAAACCTACC
Found at i:34098107 original size:18 final size:15
Alignment explanation
Indices: 34098091--34098273 Score: 80
Period size: 16 Copynumber: 11.8 Consensus size: 15
34098081 ATTTTTTATG
34098091 TTATATAATTATTTTA
1 TTATAT-ATTATTTTA
34098107 TTATATATTATTTATTA
1 TTATATATTA-TT-TTA
34098124 TGTATTATGTATTATTTT-
1 T-TA-TA--TATTATTTTA
* *
34098142 TCATAAATTATTATTA
1 TTATATATTATT-TTA
* * *
34098158 TTTTACATTATTAT-
1 TTATATATTATTTTA
34098172 TTATATATTA--TTA
1 TTATATATTATTTTA
34098185 TTATAT-TATATATTTA
1 TTATATAT-TAT-TTTA
*
34098201 -T-TA-ATTA-TATA
1 TTATATATTATTTTA
34098212 TTATATATTATTTATA
1 TTATATATTATTT-TA
*
34098228 TATATATACTT-TTATA
1 T-TATATA-TTATTTTA
*
34098244 TTATAAATTATAATTATA
1 TTATATATTAT--TT-TA
34098262 TTATATATTATT
1 TTATATATTATT
34098274 ATGTCATTTT
Statistics
Matches: 127, Mismatches: 15, Indels: 50
0.66 0.08 0.26
Matches are distributed among these distances:
11 3 0.02
12 3 0.02
13 12 0.09
14 23 0.18
15 15 0.12
16 29 0.23
17 14 0.11
18 17 0.13
19 4 0.03
20 2 0.02
21 5 0.04
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (15 bp):
TTATATATTATTTTA
Found at i:34098117 original size:7 final size:7
Alignment explanation
Indices: 34098091--34098272 Score: 103
Period size: 7 Copynumber: 25.6 Consensus size: 7
34098081 ATTTTTTATG
34098091 TTATATAA
1 TTATAT-A
*
34098099 TTATTTTA
1 TTA-TATA
34098107 TTATATA
1 TTATATA
*
34098114 TTATTTA
1 TTATATA
*
34098121 TTATGTA
1 TTATATA
*
34098128 TTATGTA
1 TTATATA
*
34098135 TTAT-TT
1 TTATATA
*
34098141 TTCATAAA
1 TT-ATATA
34098149 TTAT-TA
1 TTATATA
34098155 TTAT-T-
1 TTATATA
*
34098160 TTACATTA
1 TTATA-TA
*
34098168 TTATTTA
1 TTATATA
34098175 -TATATTA
1 TTATA-TA
34098182 TTATTATA
1 TTA-TATA
34098190 TTATATA
1 TTATATA
34098197 TT-TATTAA
1 TTATA-T-A
34098205 TTATATA
1 TTATATA
34098212 TTATATA
1 TTATATA
34098219 TTATTTATA
1 TTA--TATA
34098228 TATATATA
1 T-TATATA
*
34098236 CTTTTATA
1 -TTATATA
*
34098244 TTATAAA
1 TTATATA
34098251 TTATA-A
1 TTATATA
34098257 -T-TATA
1 TTATATA
34098262 TTATATA
1 TTATATA
34098269 TTAT
1 TTAT
34098273 TATGTCATTT
Statistics
Matches: 140, Mismatches: 15, Indels: 39
0.72 0.08 0.20
Matches are distributed among these distances:
4 2 0.01
5 5 0.04
6 16 0.11
7 71 0.51
8 32 0.23
9 12 0.09
10 2 0.01
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (7 bp):
TTATATA
Found at i:34098202 original size:22 final size:21
Alignment explanation
Indices: 34098104--34098315 Score: 66
Period size: 21 Copynumber: 9.7 Consensus size: 21
34098094 TATAATTATT
*
34098104 TTATTATATATTATTTA-TTA
1 TTATTATATATTATATATTTA
*
34098124 TGTATTATGTATTAT-T-TTTCA
1 T-TATTATATATTATATATTT-A
* * *
34098145 TAAATTAT-TATTATTTTACATTA
1 T-TATTATATATTA-TATA-TTTA
34098168 TTATTTATATATTAT-TA-TTA
1 TTA-TTATATATTATATATTTA
*
34098188 -TATTATATATT-TATTAATTA
1 TTATTATATATTATA-TATTTA
*
34098208 TATATTATATATTATTTATATATA
1 T-TATTATATATTA--TATATTTA
* *
34098232 TATACTTTTATATTATAAATTATAA
1 T-TA-TTATATATTATATATT-T-A
*
34098257 TTATATTATATATTAT-TATGTCA
1 -T-TATTATATATTATATAT-TTA
* **
34098280 TTTTTATATTATTATCCATTT-
1 TTATTATA-TATTATATATTTA
34098301 TTATCTATATATTAT
1 TTAT-TATATATTAT
34098316 TAAAAGGTTT
Statistics
Matches: 150, Mismatches: 17, Indels: 49
0.69 0.08 0.23
Matches are distributed among these distances:
17 1 0.01
18 9 0.06
19 4 0.03
20 15 0.10
21 35 0.23
22 27 0.18
23 14 0.09
24 18 0.12
25 23 0.15
26 4 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TTATTATATATTATATATTTA
Found at i:34098221 original size:37 final size:36
Alignment explanation
Indices: 34098091--34098274 Score: 131
Period size: 33 Copynumber: 5.2 Consensus size: 36
34098081 ATTTTTTATG
* *
34098091 TTATATAATTATTTTATTATATATTATT-TATTATGTA
1 TTAT-TAATTA-TATATTATATATTATTATATTATATA
* * * *
34098128 TTATGT-ATTAT-TTTTCATAAATTATTATTATTTTACA
1 TTAT-TAATTATATATT-ATATATTATTA-TATTATATA
34098165 TTATT-ATT-TATA-TAT-TATTATTATATTATATA
1 TTATTAATTATATATTATATATTATTATATTATATA
34098197 TTTATTAATTATATATTATATATTATTTATATATATATA
1 -TTATTAATTATATATTATATATTA-TTATAT-TATATA
*
34098236 CTT-TTATATTATA-A--AT-TATAATTATATTATATA
1 -TTATTA-ATTATATATTATATATTATTATATTATATA
34098269 TTATTA
1 TTATTA
34098275 TGTCATTTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 30
0.74 0.07 0.18
Matches are distributed among these distances:
32 9 0.07
33 21 0.17
34 14 0.11
35 20 0.16
36 14 0.11
37 20 0.16
38 10 0.08
39 14 0.11
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.60
Consensus pattern (36 bp):
TTATTAATTATATATTATATATTATTATATTATATA
Found at i:34098287 original size:98 final size:98
Alignment explanation
Indices: 34098083--34098291 Score: 214
Period size: 98 Copynumber: 2.1 Consensus size: 98
34098073 TTAACCTTAT
* * * * *
34098083 TTTTTATGTTATATAATTATTTTATTATATATTATTTATTATGTATTATGTATTATTTTTCATAA
1 TTTTTATATTATATAATTATTTAATTATATATTATATATTATGTATTATATATTACTTTTCAT-A
* *
34098148 ATTATTATTATTTTACATTATTATTTATATATTA
65 ATTATAATTATATTACATTATTATTTATATATTA
* * *
34098182 TTATTATATTATATATTTA-TTAATTATATATTATATATTATTTA-TATATATATACTTTT-AT-
1 TTTTTATATTATATAATTATTTAATTATATATTATATATTATGTATTATATAT-TACTTTTCATA
*
34098243 ATTATAAATTATAATTATATTA-TATATTAT-TATGTCA
65 ATTAT-AATTAT-ATTACATTATTAT-TTATATAT-T-A
34098280 TTTTTATATTAT
1 TTTTTATATTAT
34098292 TATCCATTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
95 5 0.05
96 11 0.12
97 20 0.22
98 40 0.43
99 16 0.17
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (98 bp):
TTTTTATATTATATAATTATTTAATTATATATTATATATTATGTATTATATATTACTTTTCATAA
TTATAATTATATTACATTATTATTTATATATTA
Found at i:34098289 original size:19 final size:18
Alignment explanation
Indices: 34098265--34098304 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
34098255 AATTATATTA
*
34098265 TATATTATTATGTCATTTT
1 TATATTATTAT-CCATTTT
34098284 TATATTATTATCCATTTT
1 TATATTATTATCCATTTT
34098302 TAT
1 TAT
34098305 CTATATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (18 bp):
TATATTATTATCCATTTT
Found at i:34104480 original size:29 final size:28
Alignment explanation
Indices: 34104446--34104548 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
34104436 AAATCGATCA
*
34104446 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
34104475 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
34104504 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
34104533 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
34104549 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 61 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:34108135 original size:32 final size:32
Alignment explanation
Indices: 34108094--34108158 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
34108084 GTAAGAAATT
34108094 TCTTGTTAGTCATTTCAATAATTATCAAATGA
1 TCTTGTTAGTCATTTCAATAATTATCAAATGA
34108126 TCTTGTTAGTCATTTCAATAATTATCAAATGA
1 TCTTGTTAGTCATTTCAATAATTATCAAATGA
34108158 T
1 T
34108159 TGATGATCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (32 bp):
TCTTGTTAGTCATTTCAATAATTATCAAATGA
Found at i:34112436 original size:19 final size:19
Alignment explanation
Indices: 34112412--34112449 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
34112402 AGTAAGTCCA
34112412 TGGCATCGATCTATGATTT
1 TGGCATCGATCTATGATTT
*
34112431 TGGCATCGATCTGTGATTT
1 TGGCATCGATCTATGATTT
34112450 CGATATGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (19 bp):
TGGCATCGATCTATGATTT
Found at i:34113956 original size:40 final size:39
Alignment explanation
Indices: 34113911--34114118 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
34113901 CGGAATACAA
*
34113911 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34113951 CCGGATAAAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
34113991 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
34114031 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
34114071 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
34114111 CCGGATAT
1 CCGGATAT
34114119 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:34114051 original size:80 final size:80
Alignment explanation
Indices: 34113911--34114117 Score: 245
Period size: 80 Copynumber: 2.6 Consensus size: 80
34113901 CGGAATACAA
* * *
34113911 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAAAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAAAACGACTAGCACAAATG
*
34113976 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * ** *
34113991 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AAAACGACTAGCACAAAT
*
34114055 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
34114071 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
34114118 TCATTCAATT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
80 105 0.98
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAAAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:34128621 original size:40 final size:40
Alignment explanation
Indices: 34128456--34128641 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
34128446 TCGAATGATG
* *
34128456 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
34128496 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34128536 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
34128576 TCCGGGTTAAGTCCCGAAGGCCTTTATGCGAGATACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
34128617 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34128642 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34128648 original size:80 final size:79
Alignment explanation
Indices: 34128490--34128674 Score: 182
Period size: 80 Copynumber: 2.3 Consensus size: 79
34128480 GTGCTAAGTG
** * *
34128490 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTAAATCCGGGTTAAGATCCGAAGGCATTTATGCGAGATACTAAATCCGGACTAAGATCCGAAG
**
34128555 GCATTTGTGCGAGTT
66 GCATTTGAACGAG-T
* * *
34128570 ACTAAATCCGGGTTAAG-TCCCGAAGGCCTTTATGCGAGATACTATAA-CCGGGCTATG-TCCCG
1 ACTAAATCCGGGTTAAGAT-CCGAAGGCATTTATGCGAGATACTA-AATCCGGACTAAGAT-CCG
*
34128632 AAGGTATTTGAACGAGT
63 AAGGCATTTGAACGAGT
*
34128649 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTAAATCCGGGTTAAGA-TCCGAAGG
34128675 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 13
0.79 0.10 0.12
Matches are distributed among these distances:
79 17 0.19
80 69 0.78
81 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (79 bp):
ACTAAATCCGGGTTAAGATCCGAAGGCATTTATGCGAGATACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGT
Found at i:34136693 original size:39 final size:40
Alignment explanation
Indices: 34136531--34136713 Score: 193
Period size: 39 Copynumber: 4.7 Consensus size: 40
34136521 TCGAATGATG
* *
34136531 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCTACTAAA
* *
34136570 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
34136610 TCCGGACTAAGAT-CCGAAGGCATTTGT-CGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
*
34136649 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
*
34136689 -CCGGGCTATA-TCCCGAAGGTATTTG
1 TCCGGGCTA-AGTCCCGAAGGCATTTG
34136714 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
38 6 0.05
39 77 0.61
40 44 0.35
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:34136735 original size:78 final size:79
Alignment explanation
Indices: 34136583--34136736 Score: 183
Period size: 78 Copynumber: 2.0 Consensus size: 79
34136573 GGACTAAGAT
* *
34136583 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGACGAGTTACTAA
34136648 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
34136662 CCGAAGGC-TTTGTGCGAGCTACTATAA-CCGGGCT-ATATCCCGAAGGTATTTGAACGAG-TAG
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG-ACGAGTTA-
*
34136723 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
34136737 ACTCCGAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
77 3 0.05
78 41 0.63
79 21 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:34140294 original size:14 final size:14
Alignment explanation
Indices: 34140277--34140306 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
34140267 TTAAAGAACG
*
34140277 AAAATTTCACACAT
1 AAAAATTCACACAT
34140291 AAAAATTCACACAT
1 AAAAATTCACACAT
34140305 AA
1 AA
34140307 TAAACTCAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAATTCACACAT
Found at i:34142243 original size:30 final size:30
Alignment explanation
Indices: 34142208--34142267 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
34142198 TTAGTTGTTG
* *
34142208 GTTCTCCATCAAATGGAACTGTTGTTTCAA
1 GTTCTCCATCAAATGAAACTATTGTTTCAA
34142238 GTTCTCCATCAAATGAAACTATTGTTTCAA
1 GTTCTCCATCAAATGAAACTATTGTTTCAA
34142268 CATTTCAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (30 bp):
GTTCTCCATCAAATGAAACTATTGTTTCAA
Found at i:34146950 original size:17 final size:17
Alignment explanation
Indices: 34146918--34146951 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
34146908 TGAATGGCAG
34146918 ACACATAAACCGAAAAC
1 ACACATAAACCGAAAAC
34146935 ACACGATAAACC-AAAAC
1 ACAC-ATAAACCGAAAAC
34146952 CATGCCATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.59, C:0.29, G:0.06, T:0.06
Consensus pattern (17 bp):
ACACATAAACCGAAAAC
Found at i:34157377 original size:40 final size:40
Alignment explanation
Indices: 34157286--34157506 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
34157276 ATTGAATGGT
* * * *
34157286 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
34157327 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
34157367 ATCCGGGTTAATTCCCAAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
34157407 ATCCGGGTTAATTCCCAAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
34157447 AACCGGGTTAAGTCCCGAGGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
34157488 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
34157507 ACAATCCAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
40 133 0.82
41 30 0.18
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:34165608 original size:40 final size:40
Alignment explanation
Indices: 34165517--34165737 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
34165507 ATTGAATGGT
* * * *
34165517 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
34165558 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
34165598 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
34165638 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
34165678 AACCGGGTTAAGTCCCGAGGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
34165719 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
34165738 ATAATCCAGC
Statistics
Matches: 165, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
40 135 0.82
41 30 0.18
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:34165771 original size:120 final size:121
Alignment explanation
Indices: 34165529--34165777 Score: 274
Period size: 120 Copynumber: 2.1 Consensus size: 121
34165519 CCGGGCTAAG
* * * *
34165529 TCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA
1 TCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTA
* * * *** * *
34165594 CTAAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAT
66 CTAAATCCGGGCTAATTCCCGAAGACAATCCAGCGAGTCACTAAATCCGAGTTAAT
* * *
34165650 TCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTTAAGTCCCGAGGGCATTTGTGCGAATTA
1 TCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTA
* * *
34165714 CTATAA-CCGGGCT-ATGTCCCGAAGATAATCCAGCGAGTCGCTATATCC-AGTTAAAT
66 CTA-AATCCGGGCTAAT-TCCCGAAGACAATCCAGCGAGTCACTAAATCCGAGTT-AAT
34165770 T-CCGAAGG
1 TCCCGAAGG
34165778 TACGTGATTC
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
119 12 0.11
120 76 0.71
121 19 0.18
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (121 bp):
TCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTA
CTAAATCCGGGCTAATTCCCGAAGACAATCCAGCGAGTCACTAAATCCGAGTTAAT
Found at i:34172035 original size:48 final size:48
Alignment explanation
Indices: 34171953--34172326 Score: 356
Period size: 48 Copynumber: 7.8 Consensus size: 48
34171943 ATACTAGGGT
* * *
34171953 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
* * * * * * * *
34172001 TATGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATTGACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
* * * *
34172049 TATGTGAGCCAGTGTAAGACCATGTTTAGAACAT-GCATCAGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
* * * * * * *
34172096 TATGAGAGTTAGTGTAAGACTATGTCTAGGACATGGCATCAGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
** * * *
34172144 TATCTGAG-TCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTTA
1 TATGAGAGCT-AGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
* * * * * * *
34172192 TATCAGAGTTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
* * * *
34172240 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATTGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
* * *
34172288 TATGAGAGCTAGTGTAAAACCATGTCTAGGACATGGCAT
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCAT
34172327 TGCCATCTTA
Statistics
Matches: 261, Mismatches: 62, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
47 36 0.14
48 224 0.86
49 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTGA
Found at i:34172229 original size:96 final size:96
Alignment explanation
Indices: 34171953--34172326 Score: 545
Period size: 96 Copynumber: 3.9 Consensus size: 96
34171943 ATACTAGGGT
* * * * *
34171953 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGATATGAGAGCTAATGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
* *
34172018 GACCATGTCTGGGACATGGCAT-TGACCTCGA
66 GACCATGTCTAGGACATGGCATCAG-CCTCGA
* *
34172049 TATGTGAGCCAGTGTAAGACCATGTTTAGAACAT-GCATCAGCATTTATATGAGAGTTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
*
34172113 GACTATGTCTAGGACATGGCATCAGCCTCGA
66 GACCATGTCTAGGACATGGCATCAGCCTCGA
* * * * * *
34172144 TATCTGAGTCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTTATATCAGAGTTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
* *
34172209 GACCATGTTTGGGACATGGCATCAGCCTCGA
66 GACCATGTCTAGGACATGGCATCAGCCTCGA
*
34172240 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATTGGCATTTATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
*
34172305 AACCATGTCTAGGACATGGCAT
66 GACCATGTCTAGGACATGGCAT
34172327 TGCCATCTTA
Statistics
Matches: 248, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
95 82 0.33
96 166 0.67
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
GACCATGTCTAGGACATGGCATCAGCCTCGA
Found at i:34176486 original size:49 final size:48
Alignment explanation
Indices: 34176276--34176547 Score: 169
Period size: 46 Copynumber: 5.8 Consensus size: 48
34176266 TTATTTGTGT
* *
34176276 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA--GATGTAA
1 GCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATG--A
* * * * *
34176322 CCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CT--ATGAGATGT
1 GCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAT-CGATGA
* * * * *
34176366 G-TCAGTGTAAGATCATGTCTGGGACATGGCATCGACAC-GGATATG-TGAGA
1 GCT-AATGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-CGAT--GA
* * *
34176416 GCTAGTGTAAGACCATATCTGGGACATGGCGTCGGCCTCGATTTCGAT-A
1 GCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA--TCGATGA
* * *
34176465 G-TCAATGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATGA
1 GCT-AATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATGA
*
34176512 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAATGTAAGACCATGTCTGGGACATGGCATCGGC
34176548 ATTATACCCT
Statistics
Matches: 181, Mismatches: 24, Indels: 40
0.74 0.10 0.16
Matches are distributed among these distances:
43 1 0.01
44 9 0.05
45 16 0.09
46 44 0.24
47 31 0.17
48 10 0.06
49 33 0.18
50 33 0.18
51 2 0.01
52 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATGA
Found at i:34176535 original size:96 final size:98
Alignment explanation
Indices: 34176366--34176547 Score: 271
Period size: 96 Copynumber: 1.9 Consensus size: 98
34176356 TATGAGATGT
* *
34176366 GTCAGTGTAAGATCATGTCTGGGACATGGCATCGACACGGATATGTGAGAGCTAGTGTAAGACCA
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACACGGA-ATGTGAGAGCTAGTGTAAGACCA
*
34176431 TATCTGGGACATGGCGTCGGCCTCGATTTCGATA
65 TATCTGGGACATGGCATCGGCCTCGATTTCGATA
**
34176465 GTCAATGTAAGACCATGTCTGGGACATGGCATCGAC-TTG-ATG-GATGAGCTAGTGTAAGACCA
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACACGGAATGTGA-GAGCTAGTGTAAGACCA
*
34176527 TGTCTGGGACATGGCATCGGC
65 TATCTGGGACATGGCATCGGC
34176548 ATTATACCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
95 2 0.03
96 39 0.51
98 1 0.01
99 34 0.45
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (98 bp):
GTCAATGTAAGACCATGTCTGGGACATGGCATCGACACGGAATGTGAGAGCTAGTGTAAGACCAT
ATCTGGGACATGGCATCGGCCTCGATTTCGATA
Found at i:34185037 original size:24 final size:24
Alignment explanation
Indices: 34185010--34185094 Score: 118
Period size: 24 Copynumber: 3.4 Consensus size: 24
34185000 TGGTTGTCGA
34185010 TGCTTTGAGCAGAAAGTTGCTATT
1 TGCTTTGAGCAGAAAGTTGCTATT
34185034 TGCTTTGAGCAGAAAGTTGCT-TT
1 TGCTTTGAGCAGAAAGTTGCTATT
34185057 ACCGATGCTTTGAGCAGAAAGTTGCTATT
1 -----TGCTTTGAGCAGAAAGTTGCTATT
34185086 TGCTTTGAG
1 TGCTTTGAG
34185095 AGCTATGAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
23 2 0.04
24 30 0.55
28 21 0.38
29 2 0.04
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (24 bp):
TGCTTTGAGCAGAAAGTTGCTATT
Found at i:34187467 original size:39 final size:40
Alignment explanation
Indices: 34187294--34187484 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
34187284 GGATATAGCT
* * * *
34187294 ACTCGCTCAAATGCCTTCAGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
34187334 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
34187374 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
34187414 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
34187453 ACTAG-AGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCA-CAAATGCCTTCGGGACTTAGCCCGG
34187485 TTATCATCCA
Statistics
Matches: 137, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 102 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:34193484 original size:41 final size:42
Alignment explanation
Indices: 34193395--34193534 Score: 141
Period size: 41 Copynumber: 3.5 Consensus size: 42
34193385 TTATTCGATA
* * * *
34193395 TCTCGCACAATAAGTGCCAT-AATAGTCGAAGCTATCAT-AA
1 TCTCGCACACTAAGTGCCATCAATAGCCAAAGCTATCATCAG
*
34193435 TCTTGCACACTAAGTG-CATCACATAGCCAAAGCTATC-TCAG
1 TCTCGCACACTAAGTGCCATCA-ATAGCCAAAGCTATCATCAG
*
34193476 TCTCGCACACTAAGTGCCA-CATATAGCCAAAGCTA-CTTC-G
1 TCTCGCACACTAAGTGCCATCA-ATAGCCAAAGCTATCATCAG
**
34193516 AATCGCACACTAAGTGCCA
1 TCTCGCACACTAAGTGCCA
34193535 CACACACACA
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
39 3 0.03
40 35 0.41
41 46 0.53
42 2 0.02
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.23
Consensus pattern (42 bp):
TCTCGCACACTAAGTGCCATCAATAGCCAAAGCTATCATCAG
Found at i:34193540 original size:2 final size:2
Alignment explanation
Indices: 34193533--34193558 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
34193523 CACTAAGTGC
34193533 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
34193559 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:34198214 original size:27 final size:28
Alignment explanation
Indices: 34198167--34198236 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 28
34198157 TTAGCTTTTT
* *
34198167 TTTCTTGAATAATATAGAAAA-AATT-A
1 TTTCTAGAATAATATAAAAAATAATTAA
*
34198193 TTTACTAGAATAATATAAAAAATATTTAA
1 TTT-CTAGAATAATATAAAAAATAATTAA
34198222 TTTCTAGAATAATAT
1 TTTCTAGAATAATAT
34198237 GGATTGTCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.08
27 16 0.42
28 15 0.39
29 4 0.11
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (28 bp):
TTTCTAGAATAATATAAAAAATAATTAA
Found at i:34198236 original size:28 final size:26
Alignment explanation
Indices: 34198167--34198236 Score: 88
Period size: 28 Copynumber: 2.6 Consensus size: 26
34198157 TTAGCTTTTT
*
34198167 TTTCTTGAATAATATAGAAAAAATTA
1 TTTCTAGAATAATATAGAAAAAATTA
34198193 TTTACTAGAATAATATA-AAAAATATTTAA
1 TTT-CTAGAATAATATAGAAAAA-A-TT-A
34198222 TTTCTAGAATAATAT
1 TTTCTAGAATAATAT
34198237 GGATTGTCCA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
26 8 0.21
27 13 0.33
28 14 0.36
29 4 0.10
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (26 bp):
TTTCTAGAATAATATAGAAAAAATTA
Found at i:34205606 original size:15 final size:15
Alignment explanation
Indices: 34205586--34205616 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34205576 TGGTTTATCG
*
34205586 TGTGTCCTCGATTCA
1 TGTGTCCTCCATTCA
34205601 TGTGTCCTCCATTCA
1 TGTGTCCTCCATTCA
34205616 T
1 T
34205617 CTAGTTGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.29, G:0.16, T:0.42
Consensus pattern (15 bp):
TGTGTCCTCCATTCA
Found at i:34213295 original size:12 final size:13
Alignment explanation
Indices: 34213267--34213299 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
34213257 TTATTTCTTT
34213267 TTCTCCATCTACC
1 TTCTCCATCTACC
*
34213280 TTCTCC-TCTTCC
1 TTCTCCATCTACC
34213292 TTCTCCAT
1 TTCTCCAT
34213300 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:34214393 original size:28 final size:28
Alignment explanation
Indices: 34214361--34214425 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
34214351 ATTTACTAGA
*
34214361 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
34214389 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
34214417 ATACCCCTA
1 ATACCCCTA
34214426 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:34214586 original size:27 final size:28
Alignment explanation
Indices: 34214530--34214619 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
34214520 AGGAAGCGTC
* * *
34214530 CTGGTGGCTA-TGCTACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
34214558 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
34214585 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
34214614 CTGGTG
1 CTGGTG
34214620 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:34214630 original size:29 final size:28
Alignment explanation
Indices: 34214544--34214630 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 28
34214534 TGGCTATGCT
* * * *
34214544 ACAAATTATCTATTCTGGTGGCCCTGCC
1 ACAAAATATCTGTTCTGGTGACACTGCC
** *
34214572 AC-GTATATCTGTTCTGGTGGCACTGCC
1 ACAAAATATCTGTTCTGGTGACACTGCC
* *
34214599 ACAAAATATCTGTATCTGGTGACTCTGTC
1 ACAAAATATCTGT-TCTGGTGACACTGCC
34214628 ACA
1 ACA
34214631 TTTTCTGTAT
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 22 0.47
28 10 0.21
29 15 0.32
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (28 bp):
ACAAAATATCTGTTCTGGTGACACTGCC
Found at i:34215741 original size:11 final size:10
Alignment explanation
Indices: 34215713--34215746 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
34215703 AGCCTATAAG
34215713 TATTCTGAAT
1 TATTCTGAAT
*
34215723 TTTTCTGAAT
1 TATTCTGAAT
34215733 ATATTCTGAAT
1 -TATTCTGAAT
34215744 TAT
1 TAT
34215747 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:34222235 original size:46 final size:45
Alignment explanation
Indices: 34222073--34222249 Score: 212
Period size: 46 Copynumber: 3.9 Consensus size: 45
34222063 GATGATTGAG
34222073 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
** *** * * *
34222118 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-A-A
*
34222165 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA
* *
34222211 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34222250 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
45 30 0.28
46 49 0.45
47 30 0.28
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
Found at i:34229465 original size:12 final size:13
Alignment explanation
Indices: 34229437--34229469 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
34229427 TTATTTCTTT
34229437 TTCTCCATCTACC
1 TTCTCCATCTACC
*
34229450 TTCTCC-TCTTCC
1 TTCTCCATCTACC
34229462 TTCTCCAT
1 TTCTCCAT
34229470 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:34230566 original size:28 final size:28
Alignment explanation
Indices: 34230534--34230600 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
34230524 ATTTACTAGA
* *
34230534 ATACCCCTATTTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
34230562 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
34230590 ATACCCCTATG
1 ATACCCCTATG
34230601 GTTAATTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:34230745 original size:28 final size:27
Alignment explanation
Indices: 34230704--34230794 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 27
34230694 AGGAAGCGTC
34230704 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
34230732 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
* *
34230759 CTGGTGGCACTACGACAAAAATATCTGTAT
1 CTGGTGGCACT--GCCACAAATATCTGT-T
34230789 CTGGTG
1 CTGGTG
34230795 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
27 18 0.35
28 15 0.29
29 11 0.22
30 7 0.14
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:34234243 original size:43 final size:42
Alignment explanation
Indices: 34234190--34234344 Score: 125
Period size: 43 Copynumber: 3.6 Consensus size: 42
34234180 CAAGATAAGG
* * * **
34234190 TTACATGTAAGACTATGTCTGGGATATTGACAT-TGTATTGTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGACATAT-TA-TGCAA
* * *
34234233 TTATGTGTAAGACCATATCTGGGACATTGGCATCATTATGCAA
1 TTACGTGTAAGACCATGTCTGGGACATTGACAT-ATTATGCAA
**
34234276 TTACGTGTAAGACCATGTCTGGGACATTGGGATCATTAAT-CAA
1 TTACGTGTAAGACCATGTCTGGGACATTGACAT-ATT-ATGCAA
* * * *
34234319 TTTCATGTAAGACCCTGTTTGGGACA
1 TTACGTGTAAGACCATGTCTGGGACA
34234345 GTGGCATCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
43 89 0.95
44 4 0.04
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATTGACATATTATGCAA
Found at i:34237480 original size:20 final size:20
Alignment explanation
Indices: 34237455--34237493 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34237445 GTTTATTCTC
*
34237455 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
34237475 GATTTTTAAAATTTTGTAA
1 GATTTTCAAAATTTTGTAA
34237494 TTGGATGTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:34239160 original size:28 final size:28
Alignment explanation
Indices: 34239128--34239196 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
34239118 ACGTAGATCA
34239128 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
34239156 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
34239184 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
34239197 GGGTTTGAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
26 3 0.08
27 8 0.20
28 29 0.73
ACGTcount: A:0.45, C:0.28, G:0.09, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:34245487 original size:20 final size:20
Alignment explanation
Indices: 34245462--34245499 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34245452 GTTTATTCGC
*
34245462 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
34245482 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
34245500 TTGGATGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:34247161 original size:28 final size:28
Alignment explanation
Indices: 34247129--34247197 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
34247119 ACGTAGATCA
34247129 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
34247157 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
34247185 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
34247198 GGGTTTGAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
26 3 0.08
27 8 0.20
28 29 0.73
ACGTcount: A:0.45, C:0.28, G:0.09, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:34249070 original size:37 final size:37
Alignment explanation
Indices: 34249020--34249094 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
34249010 GTTCCGAAAG
34249020 TAAACCAAAATATCATCTATAAATACCACCACAAACC
1 TAAACCAAAATATCATCTATAAATACCACCACAAACC
34249057 TAAACCAAAATATCATCTATAAATACCACCACAAACC
1 TAAACCAAAATATCATCTATAAATACCACCACAAACC
34249094 T
1 T
34249095 GTCTAAATAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (37 bp):
TAAACCAAAATATCATCTATAAATACCACCACAAACC
Found at i:34252115 original size:2 final size:2
Alignment explanation
Indices: 34252103--34252134 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
34252093 ACTTTAGCAC
*
34252103 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34252135 CCCTTTCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:34266557 original size:2 final size:2
Alignment explanation
Indices: 34266550--34266580 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
34266540 TCATGACATG
34266550 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34266581 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34268044 original size:27 final size:28
Alignment explanation
Indices: 34268014--34268066 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
34268004 GAAGTTCACA
*
34268014 ACTTTAATTA-TAAAATAATTAATTTGT
1 ACTTAAATTATTAAAATAATTAATTTGT
*
34268041 ACTTAAATTATTAAAATATTTAATTT
1 ACTTAAATTATTAAAATAATTAATTT
34268067 TAATTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (28 bp):
ACTTAAATTATTAAAATAATTAATTTGT
Found at i:34273194 original size:35 final size:35
Alignment explanation
Indices: 34273155--34273222 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
34273145 AAAAAAGGAT
* * *
34273155 CTACTGGCTCTTCAAAGCGACATCATGAAAATGAC
1 CTACTAGCTCTACAAAGCGACACCATGAAAATGAC
* *
34273190 CTACTAGCTCTACAGAGCGACACCATGTAAATG
1 CTACTAGCTCTACAAAGCGACACCATGAAAATG
34273223 TTTTACTAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (35 bp):
CTACTAGCTCTACAAAGCGACACCATGAAAATGAC
Found at i:34273742 original size:9 final size:9
Alignment explanation
Indices: 34273721--34273764 Score: 52
Period size: 10 Copynumber: 4.6 Consensus size: 9
34273711 GAAGGTTAGA
34273721 TATTTATTTT
1 TATTTA-TTT
*
34273731 TATTTGTTT
1 TATTTATTT
34273740 TATTTATTT
1 TATTTATTT
34273749 TATTTTATTT
1 TA-TTTATTT
34273759 GTATTT
1 -TATTT
34273765 TTGTAGGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 13 0.43
10 15 0.50
11 2 0.07
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (9 bp):
TATTTATTT
Found at i:34273756 original size:14 final size:15
Alignment explanation
Indices: 34273723--34273764 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
34273713 AGGTTAGATA
* *
34273723 TTTATTTTTATTTGT
1 TTTATTTATATTTAT
34273738 TTTATTTAT-TTTAT
1 TTTATTTATATTTAT
*
34273752 TTTATTTGTATTT
1 TTTATTTATATTT
34273765 TTGTAGGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.79
Consensus pattern (15 bp):
TTTATTTATATTTAT
Found at i:34276826 original size:45 final size:43
Alignment explanation
Indices: 34276755--34276838 Score: 114
Period size: 45 Copynumber: 1.9 Consensus size: 43
34276745 TAGGGGACAT
*
34276755 ACGGCTAGACCACGGGCCCACGGGGGCAAGCCGTGTGTCACAC
1 ACGGCTAGACCACGCGCCCACGGGGGCAAGCCGTGTGTCACAC
* * *
34276798 ACGGCCTAGACACACGCGCCTATGGGGGCATGCCGTGTGTC
1 ACGG-CTAGAC-CACGCGCCCACGGGGGCAAGCCGTGTGTC
34276839 CCTTAAATGG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 4 0.11
44 6 0.17
45 25 0.71
ACGTcount: A:0.19, C:0.33, G:0.35, T:0.13
Consensus pattern (43 bp):
ACGGCTAGACCACGCGCCCACGGGGGCAAGCCGTGTGTCACAC
Found at i:34289674 original size:2 final size:2
Alignment explanation
Indices: 34289655--34289693 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
34289645 TTGTGCAAAA
* *
34289655 AT AT AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34289694 CAGGTACCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:34290551 original size:15 final size:16
Alignment explanation
Indices: 34290531--34290560 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
34290521 TGGTCGAATG
34290531 TACATATAAA-TATTT
1 TACATATAAACTATTT
34290546 TACATATAAACTATT
1 TACATATAAACTATT
34290561 CATGGTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (16 bp):
TACATATAAACTATTT
Found at i:34290560 original size:42 final size:42
Alignment explanation
Indices: 34290505--34290589 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
34290495 ATATACTTTC
* *
34290505 ACATATAAGCTATTTATGGTCGAATGTACATATAAATATTTT
1 ACATATAAACTATTCATGGTCGAATGTACATATAAATATTTT
34290547 ACATATAAACTATTCATGGTCGAATGTACATATAAATATTTT
1 ACATATAAACTATTCATGGTCGAATGTACATATAAATATTTT
34290589 A
1 A
34290590 ATAAACTGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.39
Consensus pattern (42 bp):
ACATATAAACTATTCATGGTCGAATGTACATATAAATATTTT
Found at i:34297665 original size:29 final size:29
Alignment explanation
Indices: 34297537--34297659 Score: 219
Period size: 29 Copynumber: 4.2 Consensus size: 29
34297527 GTGACGAGAT
*
34297537 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
34297566 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
34297595 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
34297624 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
34297653 CGGCACT
1 TGGCACT
34297660 GGGTGTATGA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:34297684 original size:87 final size:87
Alignment explanation
Indices: 34297537--34297696 Score: 212
Period size: 87 Copynumber: 1.8 Consensus size: 87
34297527 GTGACGAGAT
* * * * * *
34297537 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACGAGCTCGAAAGATATGGCACT
34297602 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCATGCTGGAAATATA
** * * *
34297624 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTATGAGCTCGAAGGGTATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACGAGCTCGAAAGATATGGCACT
*
34297689 ATGTGTGC
66 AAGTGTGC
34297697 GGGCTTAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
87 61 1.00
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACGAGCTCGAAAGATATGGCACT
AAGTGTGCATGCTGGAAATATA
Found at i:34297714 original size:87 final size:87
Alignment explanation
Indices: 34297537--34297725 Score: 209
Period size: 87 Copynumber: 2.2 Consensus size: 87
34297527 GTGACGAGAT
* * * * * *
34297537 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACGAGCTCGAAAGATATGGCACT
* *
34297602 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCAGGCTGGAAATACA
** * * *
34297624 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTATGAGCTCGAAGGGTATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACGAGCTCGAAAGATATGGCACT
* * * *
34297689 ATGTGTGCGGGCT-TAAATCGCA
66 AAGTGTGCAGGCTGGAAAT-ACA
34297711 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
34297726 GAAATCGAGT
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
86 4 0.05
87 80 0.95
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTACGAGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAATACA
Found at i:34305624 original size:29 final size:29
Alignment explanation
Indices: 34305591--34305780 Score: 229
Period size: 29 Copynumber: 6.6 Consensus size: 29
34305581 GTGACGAGAT
34305591 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
34305620 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
34305649 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
34305678 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
34305707 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
34305736 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
34305765 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34305781 AAATCGAGTA
Statistics
Matches: 141, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
28 2 0.01
29 139 0.99
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:34311923 original size:21 final size:23
Alignment explanation
Indices: 34311897--34311939 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
34311887 CACAGCCTGT
34311897 TCACACG-GCCATGT-CCCTAGG
1 TCACACGCGCCATGTGCCCTAGG
*
34311918 TCACACGCGGCATGTGCCCTAG
1 TCACACGCGCCATGTGCCCTAG
34311940 TTACATGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 6 0.32
23 6 0.32
ACGTcount: A:0.19, C:0.37, G:0.26, T:0.19
Consensus pattern (23 bp):
TCACACGCGCCATGTGCCCTAGG
Found at i:34313635 original size:28 final size:28
Alignment explanation
Indices: 34313576--34313641 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
34313566 GGAAGTCTGA
* * *
34313576 CAAGGACTATCTTATGTAGAAAGCCCGT
1 CAAGGACTATCGTATGTAGAAAACCCGC
**
34313604 CAAGGACTATCGTATGTAGAAAATTCGC
1 CAAGGACTATCGTATGTAGAAAACCCGC
34313632 CAAGGACTAT
1 CAAGGACTAT
34313642 TATAGGTGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (28 bp):
CAAGGACTATCGTATGTAGAAAACCCGC
Found at i:34315149 original size:24 final size:24
Alignment explanation
Indices: 34315111--34315159 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
34315101 GCACTATAGA
* *
34315111 GTAACAGACATAATATGCCACAAG
1 GTAACAGACAAAATACGCCACAAG
* *
34315135 GTAACATACAAAATACGTCACAAG
1 GTAACAGACAAAATACGCCACAAG
34315159 G
1 G
34315160 CGACCTAGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.20, G:0.16, T:0.16
Consensus pattern (24 bp):
GTAACAGACAAAATACGCCACAAG
Found at i:34317170 original size:18 final size:18
Alignment explanation
Indices: 34317147--34317181 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
34317137 CTTGGCCCAT
34317147 TGCAGTAATAGTAAACAA
1 TGCAGTAATAGTAAACAA
34317165 TGCAGTAATAGTAAACA
1 TGCAGTAATAGTAAACA
34317182 TTATGCAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (18 bp):
TGCAGTAATAGTAAACAA
Found at i:34319106 original size:29 final size:29
Alignment explanation
Indices: 34319005--34319098 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
34318995 GTGACGAGAT
*
34319005 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
34319034 TTGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
34319063 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
34319092 CGGCACT
1 TGGCACT
34319099 GGGTGTGCGA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:34319123 original size:58 final size:58
Alignment explanation
Indices: 34319001--34319135 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 58
34318991 TACGGTGACG
* ** *
34319001 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATTGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
34319058 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
34319116 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
34319136 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
57 3 0.05
58 61 0.94
59 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:34320711 original size:27 final size:27
Alignment explanation
Indices: 34320681--34321103 Score: 519
Period size: 27 Copynumber: 15.8 Consensus size: 27
34320671 CTTACCATAA
** *
34320681 AAGGGCAAAACAGCCATTTTACCTCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34320708 AAGGGCAAAACAGTCATTTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34320735 AAGGGCAAAACAATCATTTTACCCTAT
1 AAGGGCAAAACAATCATTTTACCCCAT
* * * *
34320762 AAGGGAAAAATAGTCATTTTACACCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
* * ** *
34320789 AAGGGCAAAATAGTCATTTTACTACAA
1 AAGGGCAAAACAATCATTTTACCCCAT
* * **
34320816 AAAGGCAAAATAATCATTTTACCTTAT
1 AAGGGCAAAACAATCATTTTACCCCAT
* * * *
34320843 AAGGGCAAAACAGTCATTTTATCCTAA
1 AAGGGCAAAACAATCATTTTACCCCAT
* * *
34320870 AAGGGCAAAACAGTTATTTTACCTCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34320897 AAGGGCAAAACAATCATGTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34320924 AAGGGCAAAACAATCATGTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34320951 AAGGGCAAAACAATCATTTTACCCTAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34320978 AAGGGCAAAACAATCATGTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34321005 AAGGGCAAAACAATCATGTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34321032 AAGGGCAAAACAATCATTTTACCCTAT
1 AAGGGCAAAACAATCATTTTACCCCAT
* *
34321059 AAGGGCAAAAC-A--GTGTTACCCCAT
1 AAGGGCAAAACAATCATTTTACCCCAT
*
34321083 AAGGGCAAAACATTCATTTTA
1 AAGGGCAAAACAATCATTTTA
34321104 TCGATTAAGG
Statistics
Matches: 347, Mismatches: 46, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
24 20 0.06
26 1 0.00
27 326 0.94
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.24
Consensus pattern (27 bp):
AAGGGCAAAACAATCATTTTACCCCAT
Found at i:34325405 original size:21 final size:21
Alignment explanation
Indices: 34325381--34325425 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
34325371 TGAGAAAGAG
*
34325381 TTCAATTTCGGCACCACTACT
1 TTCAATTTCAGCACCACTACT
*
34325402 TTCAATTTCAGCACCGCTACT
1 TTCAATTTCAGCACCACTACT
34325423 TTC
1 TTC
34325426 TTCCCTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.33, G:0.09, T:0.36
Consensus pattern (21 bp):
TTCAATTTCAGCACCACTACT
Found at i:34330106 original size:21 final size:22
Alignment explanation
Indices: 34330081--34330121 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
34330071 CATGAAATTC
34330081 AACACATTAC-ATGCCAACTTA
1 AACACATTACAATGCCAACTTA
*
34330102 AACACATTACAATTCCAACT
1 AACACATTACAATGCCAACT
34330122 AGAACTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.44, C:0.29, G:0.02, T:0.24
Consensus pattern (22 bp):
AACACATTACAATGCCAACTTA
Found at i:34334210 original size:42 final size:42
Alignment explanation
Indices: 34334060--34334221 Score: 141
Period size: 42 Copynumber: 3.9 Consensus size: 42
34334050 TAAGATGCCA
* ** *
34334060 ATGCCATATCCCAGATATGGTCTTACATGGGATTACATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCG
* ** * * *
34334102 ATGCCGATA-GCCA-ACTATGGTCTTACACGATGTCTCGTATTG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGAAATCACATATCG
* * * *
34334144 ATG-CATGTCCCATACATGGTCTTACATGAAATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCG
* *
34334185 ATGCCATATCCCAGATATGGCCTTACACGTAATCACA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCACA
34334222 CGTAATCACA
Statistics
Matches: 91, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
40 2 0.02
41 28 0.31
42 58 0.64
43 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCG
Found at i:34334499 original size:18 final size:18
Alignment explanation
Indices: 34334457--34334500 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
34334447 TTATTTTTCC
*
34334457 CTCGTTCTAGGCCCGAAT
1 CTCGTTTTAGGCCCGAAT
34334475 CTCGTTTTAGGCCCGAAT
1 CTCGTTTTAGGCCCGAAT
34334493 CTCGTTTT
1 CTCGTTTT
34334501 TCTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.14, C:0.30, G:0.20, T:0.36
Consensus pattern (18 bp):
CTCGTTTTAGGCCCGAAT
Found at i:34336560 original size:23 final size:23
Alignment explanation
Indices: 34336534--34336578 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
34336524 CTTTAATGTT
34336534 AGTTGAATGTTGGTTGATGATTC
1 AGTTGAATGTTGGTTGATGATTC
34336557 AGTTGAATGTTGGTTGATGATT
1 AGTTGAATGTTGGTTGATGATT
34336579 TTTGCATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.02, G:0.31, T:0.44
Consensus pattern (23 bp):
AGTTGAATGTTGGTTGATGATTC
Found at i:34348211 original size:47 final size:46
Alignment explanation
Indices: 34348105--34348227 Score: 126
Period size: 47 Copynumber: 2.6 Consensus size: 46
34348095 AGGGTTATGT
* * *
34348105 GCCGATGCCATGTCCTAGACATGGTCTTATACTAGCTCATATCTCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCATATCCCAA
* *
34348152 GTCGATACCATGTCCCAGACATGGTCTTACACT-GACT-ATCATCCCATA
1 GCCGAT-GCATGTCCCAGACATGGTCTTACACTAG-CTCAT-ATCCCA-A
*
34348200 GCCGATGCATGTCCCAAACAT-GTCTTAC
1 GCCGATGCATGTCCCAGACATGGTCTTAC
34348228 TGTGACATCC
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
46 10 0.16
47 48 0.75
48 6 0.09
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCATATCCCAA
Found at i:34349944 original size:29 final size:29
Alignment explanation
Indices: 34349911--34350042 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
34349901 GTGACGAGAT
34349911 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
34349940 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
34349969 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
34349998 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
34350027 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
34350043 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:34357971 original size:29 final size:29
Alignment explanation
Indices: 34357938--34358069 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
34357928 GTGACGAGAT
34357938 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
34357967 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
34357996 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
34358025 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
34358054 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
34358070 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:34363726 original size:29 final size:29
Alignment explanation
Indices: 34363694--34363825 Score: 174
Period size: 29 Copynumber: 4.6 Consensus size: 29
34363684 AATTTAAGCC
*** * *
34363694 CGCACACTTAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** * *
34363723 CGCACACCCAGTGCCGTATCTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
34363752 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
34363781 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
34363810 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
34363826 ATCTCGTCAC
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:34371537 original size:29 final size:29
Alignment explanation
Indices: 34371463--34371562 Score: 152
Period size: 28 Copynumber: 3.6 Consensus size: 29
34371453 CCTTCGAGCT
* *
34371463 CGCACAC-CAGTGCCGTAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
34371490 TGCACACTTAGTGCC-TATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
34371518 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
34371547 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
34371563 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
27 9 0.13
28 29 0.43
29 29 0.43
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:34378010 original size:29 final size:29
Alignment explanation
Indices: 34377978--34378112 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
34377968 ATACCCTCCG
** * *
34377978 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
34378007 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
34378036 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
34378065 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
34378094 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
34378113 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:34378045 original size:58 final size:58
Alignment explanation
Indices: 34377924--34378113 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
34377914 TACTCGATTT
* * * *** *
34377924 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
34377982 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
34378040 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
34378098 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
34378114 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:34385250 original size:29 final size:29
Alignment explanation
Indices: 34385218--34385352 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
34385208 ATACCCTCCG
** * *
34385218 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
34385247 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
34385276 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
34385305 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
34385334 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
34385353 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:34385285 original size:58 final size:58
Alignment explanation
Indices: 34385164--34385353 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
34385154 TACTCGATTT
* * * *** *
34385164 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
34385222 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
34385280 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
34385338 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
34385354 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:34386569 original size:77 final size:79
Alignment explanation
Indices: 34386449--34386599 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
34386439 TATGGTAACC
34386449 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTA-CC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
34386513 CGGATATCATAGCT
66 CGGATATCATAGCT
* * *
34386527 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
34386591 CGGATATCA
66 CGGATATCA
34386600 CAATTCGTAC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 41 0.59
78 28 0.41
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:34386606 original size:39 final size:39
Alignment explanation
Indices: 34386449--34386602 Score: 247
Period size: 39 Copynumber: 3.9 Consensus size: 39
34386439 TATGGTAACC
* *
34386449 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
34386489 CGCACAATTGCCTTCGGGCTTA-CCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
34386527 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
34386566 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
34386603 TTCGTACATT
Statistics
Matches: 107, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 36 0.34
39 54 0.50
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Done.