Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 121 of 770
Found at i:35220414 original size:17 final size:17
Alignment explanation
Indices: 35220392--35220434 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
35220382 GGAACAAACG
35220392 GTCTTCGATGGGATTGA
1 GTCTTCGATGGGATTGA
35220409 GTCTTCGATGGGATTGA
1 GTCTTCGATGGGATTGA
*
35220426 GCCTTCGAT
1 GTCTTCGAT
35220435 CTAGGAGTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.35
Consensus pattern (17 bp):
GTCTTCGATGGGATTGA
Found at i:35220947 original size:12 final size:13
Alignment explanation
Indices: 35220930--35220962 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
35220920 CATAAATCAC
35220930 TTTTTTTTTCG-A
1 TTTTTTTTTCGAA
*
35220942 TTTTTTTTTGGAA
1 TTTTTTTTTCGAA
35220955 TTTTTTTT
1 TTTTTTTT
35220963 AAAACTTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.09, C:0.03, G:0.09, T:0.79
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:35226037 original size:45 final size:45
Alignment explanation
Indices: 35225941--35226044 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
35225931 GGCCCGATAT
* * * **
35225941 CGAAAGCCCGAATAGTATCTCACCGGCATTATAGCATGCTAGGCT
1 CGAAGGCCCGAATAGTATCTCACCAGCATCATAGCATGCTAGGAA
** *
35225986 TAAAGGCCCGAATAGTAT-TCCACCAGCATCATAGCCTGCTAGGAA
1 CGAAGGCCCGAATAGTATCT-CACCAGCATCATAGCATGCTAGGAA
35226031 CGAAGGCCCGAATA
1 CGAAGGCCCGAATA
35226045 CACATCACAG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.02
45 47 0.98
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
CGAAGGCCCGAATAGTATCTCACCAGCATCATAGCATGCTAGGAA
Found at i:35226077 original size:43 final size:43
Alignment explanation
Indices: 35226018--35226374 Score: 527
Period size: 43 Copynumber: 8.3 Consensus size: 43
35226008 CCAGCATCAT
* *
35226018 AGCCTGCTAGGAACGAAGGCCCGAATACACATCACAGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
* * *
35226061 AGCCTGCTAGGCACGAAAGCCCAAATACACATCACCA-GCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCA-CAGGCACAA
* * * *
35226104 AGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGACACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
* * *
35226147 AGCCTACTAGGCACGAAGGCCCGAATACACATCACTGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
* * *
35226190 AGCCTACTAGGCACAAAGGCCCGAATACACATCACTGGCACAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
*
35226233 AGCCTACTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
*
35226276 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
* *
35226319 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
35226362 AGCCTGCTAGGCA
1 AGCCTGCTAGGCA
35226375 AGGCCCAAAT
Statistics
Matches: 295, Mismatches: 17, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
42 1 0.00
43 292 0.99
44 2 0.01
ACGTcount: A:0.34, C:0.33, G:0.22, T:0.10
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACAA
Found at i:35237664 original size:93 final size:93
Alignment explanation
Indices: 35237537--35237708 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
35237527 TCCCATAAGT
* **
35237537 GAACTCGGACTCAACTCAATGAGCTAGGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
35237602 CGAGCTCTGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * * *
35237630 GAACTCGGACTCAACTCAACGAGTTCA-GACGTTCGTATCCATAAGTGGACTTAGACTCAACTTA
1 GAACTCGGACTCAACTCAACGAGCT-AGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
35237694 ACGAGCTCGGATGCC
65 ACGAGCTCGGATGCC
35237709 CAAATATCCG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 68 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTAGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:35240748 original size:30 final size:30
Alignment explanation
Indices: 35240714--35240810 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
35240704 AGCTCACTCC
35240714 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
35240744 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
35240774 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
35240804 TAGCTCA
1 TAGCTCA
35240811 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:35241472 original size:30 final size:30
Alignment explanation
Indices: 35241377--35241473 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
35241367 AGCTCACTCC
* *
35241377 TAGCTCATA-TTCAGCTCACGATCTAAATCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAAGCT
* * * **
35241407 TAACTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAG-CT
* *
35241437 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAGCT
35241467 TAGCTCA
1 TAGCTCA
35241474 TTCGGTTTTG
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 3 0.06
30 43 0.88
31 3 0.06
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAAGCT
Found at i:35242748 original size:21 final size:20
Alignment explanation
Indices: 35242714--35242765 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
35242704 ACATTCTTGT
35242714 AAAGAGAAAA-CAAAGAAAAG
1 AAAGA-AAAAGCAAAGAAAAG
35242734 AAAAGAAAAAGCAAAAGCAAAAG
1 -AAAGAAAAAGC-AAAG-AAAAG
35242757 -AAGAAAAAG
1 AAAGAAAAAG
35242766 AAAATGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.14
21 15 0.54
22 4 0.14
23 5 0.18
ACGTcount: A:0.75, C:0.06, G:0.19, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAGCAAAGAAAAG
Found at i:35242864 original size:12 final size:12
Alignment explanation
Indices: 35242856--35242880 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35242846 TTTGAAAAGC
35242856 AAAAAGAAAATG
1 AAAAAGAAAATG
35242868 AAAAAGAAAATG
1 AAAAAGAAAATG
35242880 A
1 A
35242881 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:35242877 original size:18 final size:18
Alignment explanation
Indices: 35242850--35242905 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
35242840 AAAGCCTTTG
35242850 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
35242869 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
35242887 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
35242904 AA
1 AA
35242906 TCTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:35242890 original size:30 final size:31
Alignment explanation
Indices: 35242856--35242937 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
35242846 TTTGAAAAGC
*
35242856 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
35242886 AAAAAGAGAACG-AAAAGAAATCTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* *
35242916 AAAAAGAAGATGAAACAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
35242938 TGAAACAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.62
31 8 0.19
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:35245114 original size:30 final size:30
Alignment explanation
Indices: 35245079--35245166 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
35245069 TCCGAGCTCA
35245079 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
1 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
* * * * * *
35245109 TTCAGCTTAGGAGTTTAGCCTCAGCTCAAC
1 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
* *
35245139 TTTAGCTCACGAGCTAAAGCTTAGCTCA
1 TTCAGCTCACGAGCTAAACCTTAGCTCA
35245167 TTTTAGTTTA
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (30 bp):
TTCAGCTCACGAGCTAAACCTTAGCTCAAC
Found at i:35248208 original size:10 final size:10
Alignment explanation
Indices: 35248193--35248217 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
35248183 GAGGTACTTA
35248193 ATTTTTTATT
1 ATTTTTTATT
35248203 ATTTTTTATT
1 ATTTTTTATT
35248213 ATTTT
1 ATTTT
35248218 GTTTTGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
ATTTTTTATT
Found at i:35248750 original size:9 final size:10
Alignment explanation
Indices: 35248743--35248805 Score: 58
Period size: 11 Copynumber: 6.0 Consensus size: 10
35248733 AAGAGAAAAC
35248743 AAAGAAAAGA
1 AAAGAAAAGA
35248753 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
35248765 AAAGAAGA-A
1 AAAGAAAAGA
35248774 AAAGAAAAAGA
1 AAAG-AAAAGA
35248785 AAATGAAATA-A
1 AAA-GAAA-AGA
35248796 AAAGAAAAGA
1 AAAGAAAAGA
35248806 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
9 6 0.14
10 12 0.27
11 19 0.43
12 7 0.16
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:35248766 original size:21 final size:21
Alignment explanation
Indices: 35248732--35248803 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
35248722 ACATTCTTGT
35248732 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAAGAAAAGA
*
35248753 AAAGAAAAAGCAAA-AGAAGAA
1 AAAGAAAAAGCAAAGAAAAG-A
*
35248774 AAAGAAAAAGAAAATGAAATA-A
1 AAAGAAAAAGCAAA-GAAA-AGA
35248796 AAAGAAAA
1 AAAGAAAA
35248804 GAGAGGCAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
20 8 0.19
21 23 0.53
22 9 0.21
23 2 0.05
24 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.03
Consensus pattern (21 bp):
AAAGAAAAAGCAAAGAAAAGA
Found at i:35248767 original size:6 final size:5
Alignment explanation
Indices: 35248743--35248805 Score: 58
Period size: 5 Copynumber: 12.0 Consensus size: 5
35248733 AAGAGAAAAC
*
35248743 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGAA AAAGA AAATGA
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAG-A AAAGA AAA-GA
35248791 AATA-A AAAGA AAAGA
1 AA-AGA AAAGA AAAGA
35248806 GAGGCAAGAG
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
4 4 0.08
5 25 0.51
6 19 0.39
7 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:35248884 original size:11 final size:12
Alignment explanation
Indices: 35248852--35248882 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
35248842 TTGAGAGAAC
35248852 TTGAAAAAGCCT
1 TTGAAAAAGCCT
35248864 TTGAAAAAGCCT
1 TTGAAAAAGCCT
35248876 TTGAAAA
1 TTGAAAA
35248883 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:35250576 original size:15 final size:15
Alignment explanation
Indices: 35250556--35250585 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
35250546 GTTGTTAATA
35250556 AGCGAAAGAGTGATT
1 AGCGAAAGAGTGATT
35250571 AGCGAAAGAGTGATT
1 AGCGAAAGAGTGATT
35250586 TAGTTTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.20
Consensus pattern (15 bp):
AGCGAAAGAGTGATT
Found at i:35251228 original size:30 final size:30
Alignment explanation
Indices: 35251192--35251288 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
35251182 AGCTCACTCC
*
35251192 TAGCTCATA-TTCAGCTCATGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
35251222 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
35251252 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
35251282 TAGCTCA
1 TAGCTCA
35251289 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:35253150 original size:13 final size:13
Alignment explanation
Indices: 35253132--35253156 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35253122 GTATTGATCA
35253132 TGTGTTCACACCT
1 TGTGTTCACACCT
35253145 TGTGTTCACACC
1 TGTGTTCACACC
35253157 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:35258453 original size:13 final size:13
Alignment explanation
Indices: 35258435--35258459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35258425 GATATCTATG
35258435 AAATATTAATATC
1 AAATATTAATATC
35258448 AAATATTAATAT
1 AAATATTAATAT
35258460 AAAACAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATATTAATATC
Found at i:35260507 original size:18 final size:17
Alignment explanation
Indices: 35260454--35260508 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
35260444 TCAATAAATT
35260454 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
**
35260473 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
35260490 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
35260508 A
1 A
35260509 ATGAGTTGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:35265110 original size:17 final size:17
Alignment explanation
Indices: 35265071--35265120 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
35265061 TAAATTACTT
*
35265071 ATCTTAGTTAATTGAGTTC
1 ATCTTAGTTAA-T-AGCTC
35265090 ATCTTAGTTAATAGCTC
1 ATCTTAGTTAATAGCTC
35265107 ATCTTAGATTAATA
1 ATCTTAG-TTAATA
35265121 AATGAGTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 11 0.38
18 7 0.24
19 11 0.38
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (17 bp):
ATCTTAGTTAATAGCTC
Found at i:35266633 original size:44 final size:45
Alignment explanation
Indices: 35266570--35266656 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
35266560 TCACCTGAAA
* *
35266570 AAAAAGAGAAGTCAGTAGCT-CTTTAATGCCATCCCATGCATGGG
1 AAAAAGAGAAATCAATAGCTCCTTTAATGCCATCCCATGCATGGG
* * *
35266614 AAAAAGATAAATCAATAGCTCCTTTAATGTCGTCCCATGCATG
1 AAAAAGAGAAATCAATAGCTCCTTTAATGCCATCCCATGCATG
35266657 CTTGTCTTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 17 0.46
45 20 0.54
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (45 bp):
AAAAAGAGAAATCAATAGCTCCTTTAATGCCATCCCATGCATGGG
Found at i:35268485 original size:19 final size:19
Alignment explanation
Indices: 35268456--35268507 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
35268446 AATAAATTAC
35268456 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
* *
35268475 TTATTTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
35268494 TCATCTTAGTTAAT
1 TCATCTTAGTTAAT
35268508 AACTCATCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.08, G:0.13, T:0.52
Consensus pattern (19 bp):
TCATCTTAGTTAATTGAGT
Found at i:35268516 original size:17 final size:18
Alignment explanation
Indices: 35268494--35268527 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
35268484 TTAATTGAGT
35268494 TCATCTTAG-TTAATAAC
1 TCATCTTAGATTAATAAC
35268511 TCATCTTAGATTAATAA
1 TCATCTTAGATTAATAA
35268528 ATGAGTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (18 bp):
TCATCTTAGATTAATAAC
Found at i:35273527 original size:21 final size:22
Alignment explanation
Indices: 35273480--35273533 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
35273470 AAAGGAAGCG
*
35273480 AGAAAAAGAAATCGAGAGAAGA
1 AGAAAAAGAAATCGAGAGAAAA
* *
35273502 A-AAAAAGACATGGA-AGAAAA
1 AGAAAAAGAAATCGAGAGAAAA
*
35273522 AGAAAAGGAAAT
1 AGAAAAAGAAAT
35273534 AAAAAGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 6 0.23
21 19 0.73
22 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.24, T:0.06
Consensus pattern (22 bp):
AGAAAAAGAAATCGAGAGAAAA
Found at i:35273621 original size:17 final size:18
Alignment explanation
Indices: 35273599--35273644 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
35273589 TGTGAGCAAG
35273599 GAAAGAAAGTTGAA-AAA
1 GAAAGAAAGTTGAAGAAA
* *
35273616 GAAAGAGAGATGAAGAAA
1 GAAAGAAAGTTGAAGAAA
35273634 GAAAAGAAAGT
1 G-AAAGAAAGT
35273645 GTCCAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 12 0.52
18 4 0.17
19 7 0.30
ACGTcount: A:0.63, C:0.00, G:0.28, T:0.09
Consensus pattern (18 bp):
GAAAGAAAGTTGAAGAAA
Found at i:35275434 original size:26 final size:25
Alignment explanation
Indices: 35275404--35275462 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
35275394 TTTATGTCAT
*
35275404 TAAATAAAAAAAGTTTAAAAATATAA
1 TAAATAAAAAAA-TTTAAAAACATAA
* *
35275430 TAAATCAAATATATTTAAAAACATAA
1 TAAAT-AAAAAAATTTAAAAACATAA
35275456 -AAATAAA
1 TAAATAAA
35275463 TATTAAAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 4 0.14
26 17 0.59
27 5 0.17
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (25 bp):
TAAATAAAAAAATTTAAAAACATAA
Found at i:35275477 original size:22 final size:22
Alignment explanation
Indices: 35275436--35275494 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
35275426 ATAATAAATC
* *
35275436 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
35275456 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
35275478 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
35275495 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:35276217 original size:9 final size:9
Alignment explanation
Indices: 35276199--35276254 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
35276189 GTTTATTTAA
35276199 TTAA-GTGT
1 TTAATGTGT
35276207 TTAATGTGT
1 TTAATGTGT
35276216 TT--TGTGT
1 TTAATGTGT
35276223 TTAATAAGTGT
1 TTAAT--GTGT
35276234 TTAAATGTGT
1 TT-AATGTGT
*
35276244 TTAATATGT
1 TTAATGTGT
35276253 TT
1 TT
35276255 GTTTTAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
7 7 0.17
8 4 0.10
9 15 0.37
10 6 0.15
11 6 0.15
12 3 0.07
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (9 bp):
TTAATGTGT
Found at i:35276246 original size:37 final size:33
Alignment explanation
Indices: 35276203--35276270 Score: 91
Period size: 37 Copynumber: 1.9 Consensus size: 33
35276193 ATTTAATTAA
*
35276203 GTGTTTAATGTGTTTTGTGTTTAATAAGTGTTTAAAT
1 GTGTTTAATATG-TTTGT-TTTAAT-A-TGTTTAAAT
35276240 GTGTTTAATATGTTTGTTTTAATATGTTTAA
1 GTGTTTAATATGTTTGTTTTAATATGTTTAA
35276271 TTGCATGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 6 0.20
36 5 0.17
37 11 0.37
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (33 bp):
GTGTTTAATATGTTTGTTTTAATATGTTTAAAT
Found at i:35276252 original size:11 final size:11
Alignment explanation
Indices: 35276218--35276266 Score: 55
Period size: 11 Copynumber: 4.3 Consensus size: 11
35276208 TAATGTGTTT
35276218 TGTGTTTAATA
1 TGTGTTTAATA
*
35276229 AGTGTTTAA-A
1 TGTGTTTAATA
35276239 TGTGTTTAATA
1 TGTGTTTAATA
35276250 TGTTTGTTTTAATA
1 TG--TG-TTTAATA
35276264 TGT
1 TGT
35276267 TTAATTGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 9 0.28
11 11 0.34
12 1 0.03
13 2 0.06
14 9 0.28
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (11 bp):
TGTGTTTAATA
Found at i:35276396 original size:24 final size:24
Alignment explanation
Indices: 35276347--35276396 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
35276337 TTTAAGTGAT
* *
35276347 TTTTGGTTACATACAAGGGGGACA
1 TTTTGATTACATACAAGGGAGACA
*
35276371 TTTTGATTACATACAAGGGAGCCA
1 TTTTGATTACATACAAGGGAGACA
35276395 TT
1 TT
35276397 ATACATCATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (24 bp):
TTTTGATTACATACAAGGGAGACA
Found at i:35277022 original size:6 final size:6
Alignment explanation
Indices: 35277011--35277051 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
35277001 AATAATTTAT
*
35277011 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
35277052 AAATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:35277052 original size:20 final size:20
Alignment explanation
Indices: 35277014--35277052 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
35277004 AATTTATAAA
**
35277014 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
35277034 TAAAAATAAAAATAAAAAA
1 TAAAAATAAAAATAAAAAA
35277053 AATATAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:35277085 original size:9 final size:9
Alignment explanation
Indices: 35277071--35277127 Score: 60
Period size: 9 Copynumber: 6.3 Consensus size: 9
35277061 TTTATACAAA
*
35277071 TAATTTGGT
1 TAATTCGGT
* *
35277080 TAATTTGGG
1 TAATTCGGT
*
35277089 TAATTCGGG
1 TAATTCGGT
*
35277098 TAATTCGAT
1 TAATTCGGT
*
35277107 TAATTCGAT
1 TAATTCGGT
35277116 TAATTCGGT
1 TAATTCGGT
35277125 TAA
1 TAA
35277128 GTTTATACTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:35280377 original size:30 final size:30
Alignment explanation
Indices: 35280343--35280439 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
35280333 TAAACTAAAA
35280343 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
35280373 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* * *
35280403 TAAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
35280433 TGAGCTA
1 TGAGCTA
35280440 GGAGTGAGCT
Statistics
Matches: 48, Mismatches: 16, Indels: 6
0.69 0.23 0.09
Matches are distributed among these distances:
29 2 0.04
30 40 0.83
31 6 0.12
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:35285045 original size:41 final size:41
Alignment explanation
Indices: 35285000--35285117 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
35284990 TGAAAGATAA
35285000 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
35285041 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35285071 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35285112 ATGTAG
1 ATGTAG
35285118 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:35285056 original size:71 final size:71
Alignment explanation
Indices: 35284968--35285131 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35284958 GAGATGTATC
35284968 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35285033 AGGACA
66 AGGACA
35285039 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35285104 AGGACA
66 AGGACA
35285110 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
35285132 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:35292624 original size:41 final size:41
Alignment explanation
Indices: 35292579--35292696 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
35292569 TGAAAGATAA
35292579 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
35292620 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35292650 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
35292691 ATGTAG
1 ATGTAG
35292697 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:35292635 original size:71 final size:71
Alignment explanation
Indices: 35292547--35292710 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
35292537 GAGATGTATC
35292547 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35292612 AGGACA
66 AGGACA
35292618 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
35292683 AGGACA
66 AGGACA
35292689 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
35292711 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:35299325 original size:40 final size:39
Alignment explanation
Indices: 35299160--35299343 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
35299150 AAATTGAATG
* * *
35299160 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
35299200 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
35299240 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
35299280 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
35299319 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
35299344 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:35299368 original size:80 final size:81
Alignment explanation
Indices: 35299200--35299388 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
35299190 GCTGGAAATT
* * * *
35299200 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
35299265 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
35299281 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
35299344 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
35299360 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
35299389 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:35303546 original size:56 final size:53
Alignment explanation
Indices: 35303453--35303561 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
35303443 TGAAAAAAAA
35303453 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
35303506 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
35303562 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:35304836 original size:40 final size:40
Alignment explanation
Indices: 35304754--35304920 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
35304744 AAATTGAATG
* * ** *
35304754 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGACT
* * *
35304793 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * * *
35304833 ATATTCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
35304873 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
35304913 ATATCCGG
1 ATATCCGG
35304921 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.17
40 83 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:35306606 original size:46 final size:46
Alignment explanation
Indices: 35306448--35306625 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
35306438 TCGTGAGGTC
* * *
35306448 GATGCATGTCCCAGACATATCTTACACTAGCTCTCGT-CTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTC-ATGCT
* * * * *
35306494 GATGCATGTCCTAGACATGTCTTACAATGGCT-TAAATATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATA-CTC-ATGCT
*
35306542 GATGCAT-TCCCCAGACATGTCTTACACTGGCTCTCATACT-ATTGCT
1 GATGCATGT-CCCAGACATGTCTTACACTAGCTCTCATACTCA-TGCT
* *
35306588 GATGCATGTCTCAGACATGTCTTACACTAGCTCACATA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATA
35306626 TCACCCATTC
Statistics
Matches: 109, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.02
46 65 0.60
47 4 0.04
48 37 0.34
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTCATGCT
Found at i:35306627 original size:94 final size:94
Alignment explanation
Indices: 35306396--35306619 Score: 244
Period size: 94 Copynumber: 2.4 Consensus size: 94
35306386 CACAATATAA
* ***
35306396 GCTGATGCCATGTTTCAGACGA-GTCTTACACTAGCTTGTGTATCGTGAGGTCGATGCATGTCCC
1 GCTGATG-CATGTCTCAGAC-ATGTCTTACACTAGCTTAAATATCGTGAGGTCGATGCATGTCCC
*
35306460 AGACATATCTTACACTAGCTCTCGTCTCAAT
64 AGACATATCTTACACTAGCTCTCATCTCAAT
* * *
35306491 GCCGATGCATGTC-CTAGACATGTCTTACAATGGCTTAAATATC-TCGAGG-CTGATGCAT-TCC
1 GCTGATGCATGTCTC-AGACATGTCTTACACTAGCTTAAATATCGT-GAGGTC-GATGCATGT-C
* * *
35306552 CCAGACATGTCTTACACTGGCTCTCATACT-ATT
62 CCAGACATATCTTACACTAGCTCTCAT-CTCAAT
35306585 GCTGATGCATGTCTCAGACATGTCTTACACTAGCT
1 GCTGATGCATGTCTCAGACATGTCTTACACTAGCT
35306620 CACATATCAC
Statistics
Matches: 108, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
93 5 0.05
94 94 0.87
95 9 0.08
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (94 bp):
GCTGATGCATGTCTCAGACATGTCTTACACTAGCTTAAATATCGTGAGGTCGATGCATGTCCCAG
ACATATCTTACACTAGCTCTCATCTCAAT
Found at i:35313764 original size:46 final size:46
Alignment explanation
Indices: 35313708--35313837 Score: 138
Period size: 46 Copynumber: 2.8 Consensus size: 46
35313698 TCGAGAGGCC
*
35313708 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTCAACGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACT-AACGCT
* * * * ***
35313754 GATGCATGTCCTAGACATGTCTTAAATTGGCTCTCATACTGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTAACGCT
* *
35313800 GATGCATG-CCCTAAACATGTCTTACACTAGCTCACATA
1 GATGCATGTCCC-AGACATGTCTTACACTAGCTCTCATA
35313838 TCACCCATTA
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
45 2 0.03
46 64 0.94
47 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTAACGCT
Found at i:35316955 original size:188 final size:188
Alignment explanation
Indices: 35316711--35317093 Score: 502
Period size: 188 Copynumber: 2.0 Consensus size: 188
35316701 AGAAGATGAT
* * * *
35316711 ATTTGTTGTTGTAGTTTCATTCCAAATCATTGCAATTTCAGGTGTATAGGAATTGTAGCTTCAAT
1 ATTTGTAGTTGTAGTTTCATTCCAAATCACTGCAATTTCAGGGGTATAGGAATTGTAGATTCAAT
* * * *
35316776 CCAATCCAACACAACTTTAGGGATATCGAATTTGTAGCTTCATCTTACTCCACTACAACTTTAAA
66 CCAATCCAACACAACTTCAGGGATATAGAATCTGTAGCTTCATCTTACTCCACTACAACTTCAAA
* * *
35316841 GAGATAAGATTCACTATGGCAGATTCAATCTGACCAATTGCAATTTCAGGGGTATAGG
131 GAGATAAGATTCACTATGGCAGATTCAACCTGACCAACTGCAACTTCAGGGGTATAGG
* *
35316899 ATTTGTAGTTGTAGCTTT-ATTCC-AACCTACTGCAAATTT-AGGGGTATAGGAATTGTAGATTT
1 ATTTGTAGTTGTAG-TTTCATTCCAAATC-ACTGC-AATTTCAGGGGTATAGGAATTGTAGATTC
* *** *
35316961 AATCCAATCTATTGCAACTTCAGGGATATAGGATCTGTAGCTTCATCTTACTCCACTACAACTTC
63 AATCCAATCCAACACAACTTCAGGGATATAGAATCTGTAGCTTCATCTTACTCCACTACAACTTC
* * * * *
35317026 AGAGAGATAAGATTCGCTATGGTAGATTCGACCTGACCCACTGCAACTTCAGGGGTATAGG
128 AAAGAGATAAGATTCACTATGGCAGATTCAACCTGACCAACTGCAACTTCAGGGGTATAGG
*
35317087 AATTGTA
1 ATTTGTA
35317094 CCTTCAATCT
Statistics
Matches: 168, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
187 3 0.02
188 157 0.93
189 8 0.05
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (188 bp):
ATTTGTAGTTGTAGTTTCATTCCAAATCACTGCAATTTCAGGGGTATAGGAATTGTAGATTCAAT
CCAATCCAACACAACTTCAGGGATATAGAATCTGTAGCTTCATCTTACTCCACTACAACTTCAAA
GAGATAAGATTCACTATGGCAGATTCAACCTGACCAACTGCAACTTCAGGGGTATAGG
Found at i:35317000 original size:44 final size:44
Alignment explanation
Indices: 35316907--35316993 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
35316897 GGATTTGTAG
* * * *
35316907 TTGTAGCTTTATTCCAACCTACTGCAAATTTAGGGGTATAGGAA
1 TTGTAGATTTAATCCAACCTACTGCAAATTCAGGGATATAGGAA
* * *
35316951 TTGTAGATTTAATCCAATCTATTGCAACTTCAGGGATATAGGA
1 TTGTAGATTTAATCCAACCTACTGCAAATTCAGGGATATAGGA
35316994 TCTGTAGCTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (44 bp):
TTGTAGATTTAATCCAACCTACTGCAAATTCAGGGATATAGGAA
Found at i:35317023 original size:44 final size:45
Alignment explanation
Indices: 35316973--35317168 Score: 152
Period size: 44 Copynumber: 4.3 Consensus size: 45
35316963 TCCAATCTAT
*
35316973 TGCAACTTCAGGGATATAGGATCTGTAGCTTC-ATCTTACTCCAC
1 TGCAACTTCAGGGATATAGGATCTGTAGCTTCAATCTGACTCCAC
* * * * * * *
35317017 TACAACTTCAGAGAGATAAGATTCGCTATGGTAGATTCGACCTGAC-CCAC
1 TGCAACTTCAGGGATATAGGA-T--C--T-GTAGCTTCAATCTGACTCCAC
* *
35317067 TGCAACTTCAGGGGTATAGGAAT-TGTACCTTCAATCTGA-TCCAC
1 TGCAACTTCAGGGATATAGG-ATCTGTAGCTTCAATCTGACTCCAC
* * *
35317111 TGCAACCTT-AGGGATATAGGATTTGTAGC-TCCATCTTACTCCAC
1 TGCAA-CTTCAGGGATATAGGATCTGTAGCTTCAATCTGACTCCAC
*
35317155 TGCAACTTTAGGGA
1 TGCAACTTCAGGGA
35317169 GATAAGATTT
Statistics
Matches: 119, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
43 12 0.10
44 67 0.56
45 5 0.04
47 1 0.01
49 1 0.01
50 27 0.23
51 6 0.05
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
TGCAACTTCAGGGATATAGGATCTGTAGCTTCAATCTGACTCCAC
Found at i:35317027 original size:138 final size:137
Alignment explanation
Indices: 35316922--35317187 Score: 345
Period size: 138 Copynumber: 1.9 Consensus size: 137
35316912 GCTTTATTCC
* * * * * *
35316922 AACCTACTGCAAATTTAGGGGTATAGGAATTGTAGATTTAATCCAATCTATTGCAA-CTTCAGGG
1 AACCCACTGCAAATTCAGGGGTATAGGAATTGTACATTCAATCCAATCCACTGCAACCTT-AGGG
* *
35316986 ATATAGGATCTGTAGCTTCATCTTACTCCACTACAACTTCAGAGAGATAAGATTCGCTATGGTAG
65 ATATAGGATCTGTAGCTCCATCTTACTCCACTACAACTTCAG-GGGATAAGATTCGCTATGGTAG
35317051 ATTCGACCT
129 ATTCGACCT
* * * **
35317060 GACCCACTGCAACTTCAGGGGTATAGGAATTGTACCTTCAATCTGATCCACTGCAACCTTAGGGA
1 AACCCACTGCAAATTCAGGGGTATAGGAATTGTACATTCAATCCAATCCACTGCAACCTTAGGGA
* * * *
35317125 TATAGGATTTGTAGCTCCATCTTACTCCACTGCAACTTTAGGGAGATAAGATTTGCTATGGTA
66 TATAGGATCTGTAGCTCCATCTTACTCCACTACAACTTCAGGG-GATAAGATTCGCTATGGTA
35317188 ACTTCAACTT
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
137 1 0.01
138 105 0.96
139 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (137 bp):
AACCCACTGCAAATTCAGGGGTATAGGAATTGTACATTCAATCCAATCCACTGCAACCTTAGGGA
TATAGGATCTGTAGCTCCATCTTACTCCACTACAACTTCAGGGGATAAGATTCGCTATGGTAGAT
TCGACCT
Found at i:35324399 original size:43 final size:44
Alignment explanation
Indices: 35324310--35324472 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 44
35324300 ACCGAGATAC
* *** *
35324310 GATTACATGTTAGACCATGTCTGGGACATTGGCAT-TGTATTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCACCAATAT
* *
35324353 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCACCAAT-T
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCACCAATAT
* * * * *
35324396 GATTTCATGTAAGACCCTGTCTAGGACAATGGCATCA--ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCACCA-ATAT
* * *
35324439 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
35324473 TGTATGAGTT
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 87 0.89
44 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (44 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCACCAATAT
Found at i:35325268 original size:22 final size:20
Alignment explanation
Indices: 35325243--35325291 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
35325233 GTTATGTAAG
35325243 TTTGATGATTTTGGCATATAGA
1 TTTGATG-TTTTGGC-TATAGA
*
35325265 TTTGGTATGTTTTGGCTATGGA
1 TTT-G-ATGTTTTGGCTATAGA
35325287 TTTGA
1 TTTGA
35325292 GTAGTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.20, C:0.04, G:0.27, T:0.49
Consensus pattern (20 bp):
TTTGATGTTTTGGCTATAGA
Found at i:35331220 original size:8 final size:8
Alignment explanation
Indices: 35331194--35331253 Score: 59
Period size: 8 Copynumber: 7.6 Consensus size: 8
35331184 ATGTATCAGC
35331194 AAAAGCCG
1 AAAAGCCG
* *
35331202 AAATGCTG
1 AAAAGCCG
35331210 AAAAGCCG
1 AAAAGCCG
* *
35331218 AAAAGTCA
1 AAAAGCCG
*
35331226 AAAAGCTG
1 AAAAGCCG
*
35331234 AAATGCCG
1 AAAAGCCG
35331242 AAAAGCC-
1 AAAAGCCG
35331249 AAAAG
1 AAAAG
35331254 TTTGGCTACG
Statistics
Matches: 40, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
7 5 0.12
8 35 0.88
ACGTcount: A:0.52, C:0.18, G:0.22, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:35331233 original size:24 final size:24
Alignment explanation
Indices: 35331194--35331252 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
35331184 ATGTATCAGC
* *
35331194 AAAAGCCGAAATGCTGAAAAGCCG
1 AAAAGCCAAAAAGCTGAAAAGCCG
* *
35331218 AAAAGTCAAAAAGCTGAAATGCCG
1 AAAAGCCAAAAAGCTGAAAAGCCG
35331242 AAAAGCCAAAA
1 AAAAGCCAAAA
35331253 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.53, C:0.19, G:0.20, T:0.08
Consensus pattern (24 bp):
AAAAGCCAAAAAGCTGAAAAGCCG
Found at i:35331518 original size:29 final size:28
Alignment explanation
Indices: 35331463--35331583 Score: 125
Period size: 29 Copynumber: 4.2 Consensus size: 28
35331453 GTGAGCATGA
* * * *
35331463 ATATGAATGTGACTGGGCCAAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
35331491 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
35331520 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
35331549 ATATGAATATGATTGGGCTTTATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
35331577 AGATAAA
1 ATATAAA
35331584 GGTATGTGAA
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 30 0.38
29 48 0.62
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:35331548 original size:58 final size:57
Alignment explanation
Indices: 35331476--35331586 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
35331466 TGAATGTGAC
* * *
35331476 TGGGCCAAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCAAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATAAAGGTGATT
* * * * *
35331534 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTTATGGGCCAGATAAAGGT
1 TGGGCCAAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATAAAGGT
35331587 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (57 bp):
TGGGCCAAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATAAAGGTGATT
Found at i:35335703 original size:14 final size:14
Alignment explanation
Indices: 35335684--35335713 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
35335674 TGAACAAACC
35335684 TTGTAACAACCTGA
1 TTGTAACAACCTGA
*
35335698 TTGTAACATCCTGA
1 TTGTAACAACCTGA
35335712 TT
1 TT
35335714 TTAGGCTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (14 bp):
TTGTAACAACCTGA
Found at i:35338099 original size:27 final size:27
Alignment explanation
Indices: 35338046--35338185 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
35338036 GTGACGAAGT
35338046 CACCAGATA-AGATAT-TGTGGCAGAGC
1 CACCAGA-ACAGATATATGTGGCAGAGC
35338072 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* *
35338099 CACCAGATCAGATA-ATCGTGGCATAGC
1 CACCAGAACAGATATAT-GTGGCAGAGC
35338126 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* *
35338153 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
35338180 CACCAG
1 CACCAG
35338186 GACGCTTCCT
Statistics
Matches: 103, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
25 1 0.01
26 16 0.16
27 84 0.82
28 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGAGC
Found at i:35338129 original size:54 final size:54
Alignment explanation
Indices: 35338046--35338185 Score: 246
Period size: 54 Copynumber: 2.6 Consensus size: 54
35338036 GTGACGAAGT
* *
35338046 CACCAGATAAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
35338099 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
35338153 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
35338186 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 12 0.15
54 70 0.85
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:35339831 original size:26 final size:26
Alignment explanation
Indices: 35339800--35339907 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
35339790 ATGAAATGCC
*
35339800 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
35339826 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
35339852 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
35339878 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
35339904 ATCA
1 ATCA
35339908 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:35345227 original size:27 final size:27
Alignment explanation
Indices: 35345185--35345317 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
35345175 GTCACTAGAT
35345185 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
*
35345211 ACAGATATATGTGGCAGAGCCATCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* * *
35345238 TCAGATA-ATCGTGGCATAACCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
35345265 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
35345292 TCAGATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
35345318 GACGCTTCCT
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
26 11 0.12
27 80 0.86
28 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:35345263 original size:54 final size:54
Alignment explanation
Indices: 35345181--35345317 Score: 222
Period size: 54 Copynumber: 2.5 Consensus size: 54
35345171 CGAAGTCACT
* *
35345181 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCATC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
* *
35345235 AGATCAGATAATCGTGGCATAACCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
35345289 AGATCAGATAATTGTGGCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
35345318 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 5 0.07
54 71 0.93
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
Found at i:35346971 original size:26 final size:26
Alignment explanation
Indices: 35346940--35347047 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
35346930 TGAAATGCCC
*
35346940 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
35346966 ATCATGGAACATTTACCTAGCCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
35346992 ATCATGGAATATTTGCCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
35347018 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
35347044 ATCA
1 ATCA
35347048 ATTTGTACGA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.34, C:0.24, G:0.09, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:35347546 original size:50 final size:50
Alignment explanation
Indices: 35347478--35347856 Score: 494
Period size: 50 Copynumber: 7.6 Consensus size: 50
35347468 ATTGTGAGTA
35347478 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
*
35347528 CACGTGTGTATTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
*
35347578 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
* * * * *
35347628 CACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGT-TGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
* * * * * * ** ** *
35347677 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTGAGGT
*
35347728 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
** *
35347778 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATAAT-TGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTGAGGT
* * *
35347827 CGCATGTATAGTACTAAGTGCAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
35347857 TGCGTACCAG
Statistics
Matches: 292, Mismatches: 34, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
49 70 0.24
50 183 0.63
51 39 0.13
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
Found at i:35347742 original size:150 final size:150
Alignment explanation
Indices: 35347478--35347869 Score: 561
Period size: 150 Copynumber: 2.6 Consensus size: 150
35347468 ATTGTGAGTA
* * * * * *
35347478 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTATTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGT-TGGTCGCATGTGTAGTACT
* * * ** *
35347543 AAGTGCAGGCTACTACGTGTATCAGAT-GGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACT
65 AAGTGCAGGCTACTATGCGTACCAGATAACTGAGATCACATGTGTAGTACTAAGTGCAGGCTACT
35347607 ACGTGTATCAGATGGTGAGGT
130 ACGTGTATCAGATGGTGAGGT
* * *
35347628 CACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGGTCGCATGTGTAGTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGTACTA
* ** *
35347693 AGTGCAGGCTACTATGCGTACCTGATAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
66 AGTGCAGGCTACTATGCGTACCAGATAACTGAGATCACATGTGTAGTACTAAGTGCAGGCTACTA
*
35347758 CGTGTATCAGATGGTTAGGT
131 CGTGTATCAGATGGTGAGGT
* * *
35347778 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCGCATGTATAGTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGTACTA
35347843 AGTGCAGGCTACTATGCGTACCAGATA
66 AGTGCAGGCTACTATGCGTACCAGATA
35347870 GCTTCGGCTA
Statistics
Matches: 215, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
149 38 0.18
150 177 0.82
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (150 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGTACTA
AGTGCAGGCTACTATGCGTACCAGATAACTGAGATCACATGTGTAGTACTAAGTGCAGGCTACTA
CGTGTATCAGATGGTGAGGT
Found at i:35347761 original size:28 final size:28
Alignment explanation
Indices: 35347729--35347812 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
35347719 AACTTTGATC
35347729 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
35347757 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
35347779 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
35347807 ACGTGT
1 ACGTGT
35347813 ACTAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:35350650 original size:16 final size:15
Alignment explanation
Indices: 35350601--35350679 Score: 65
Period size: 15 Copynumber: 5.3 Consensus size: 15
35350591 GTGCTGTAAA
35350601 TTGGATTT-TCGTATC
1 TTGGATTTCTC-TATC
*
35350616 ATGGATTTCTCTATC
1 TTGGATTTCTCTATC
*
35350631 TTGGATTTCTTTATTC
1 TTGGATTTCTCTA-TC
* *
35350647 TTGG-CTTCTCTGT-
1 TTGGATTTCTCTATC
*
35350660 TTCAGATTTCTCTATC
1 TT-GGATTTCTCTATC
35350676 TTGG
1 TTGG
35350680 TTTTTCTGGA
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
13 2 0.04
14 2 0.04
15 35 0.71
16 10 0.20
ACGTcount: A:0.13, C:0.18, G:0.16, T:0.53
Consensus pattern (15 bp):
TTGGATTTCTCTATC
Found at i:35352736 original size:30 final size:30
Alignment explanation
Indices: 35352700--35352759 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
35352690 TTCCTGAGCC
35352700 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
35352730 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
35352760 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:35353542 original size:28 final size:28
Alignment explanation
Indices: 35353510--35353593 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
35353500 AACTTTGATC
35353510 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
35353538 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
35353560 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
35353588 ACGTGT
1 ACGTGT
35353594 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:35353581 original size:50 final size:49
Alignment explanation
Indices: 35353409--35353651 Score: 288
Period size: 49 Copynumber: 4.9 Consensus size: 49
35353399 ATTGTGAGTA
* *
35353409 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAGTTGGT
* * * * * * * *
35353458 CGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGATAACTTTGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-A-GTTGGT
* * *
35353509 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAGTT-GGT
*
35353559 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAGTTGGT
* * * * *
35353608 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAG
35353652 CTTCGGCTAC
Statistics
Matches: 163, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 80 0.49
50 44 0.27
51 39 0.24
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAGTTGGT
Found at i:35361980 original size:49 final size:49
Alignment explanation
Indices: 35361919--35362078 Score: 261
Period size: 49 Copynumber: 3.3 Consensus size: 49
35361909 GTATGAGGTA
35361919 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
35361968 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
35362017 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--ATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
35362064 TATAAATGTGATAAG
1 TATATATGTGATAAG
35362079 TCCCGAAGGA
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 16 0.15
49 89 0.85
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:35364785 original size:12 final size:12
Alignment explanation
Indices: 35364768--35364802 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
35364758 ACAGAATAAG
35364768 CAGTAGGTGGTA
1 CAGTAGGTGGTA
35364780 CAGTAGGTGGTA
1 CAGTAGGTGGTA
35364792 CAGTAGGTGGT
1 CAGTAGGTGGT
35364803 GCAGGATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.43, T:0.26
Consensus pattern (12 bp):
CAGTAGGTGGTA
Found at i:35366321 original size:37 final size:36
Alignment explanation
Indices: 35366277--35366443 Score: 136
Period size: 37 Copynumber: 4.5 Consensus size: 36
35366267 CAACTTACAC
* *
35366277 TCAGTATAATAGTAGGATTTGCTCGATTAGACATCAT
1 TCAGTATAATAGTAAGATTTACTCGATT-GACATCAT
** * * *
35366314 TCAGTATAATAGTAACCTTTACTCAATTTATCTTCAT
1 TCAGTATAATAGTAAGATTTACTCGATTGA-CATCAT
* * * * *
35366351 TCAATATAATAGTAAGATTTTCTCGGTTGAAATTCTT
1 TCAGTATAATAGTAAGATTTACTCGATTGACA-TCAT
** * * *
35366388 TCAGTATAACGGTATGATTTCCTCGATTGAGCTTCAT
1 TCAGTATAATAGTAAGATTTACTCGATTGA-CATCAT
*
35366425 TCAGTATAACAGTAAGATT
1 TCAGTATAATAGTAAGATT
35366444 GGTTTGATAT
Statistics
Matches: 99, Mismatches: 28, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
36 1 0.01
37 98 0.99
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (36 bp):
TCAGTATAATAGTAAGATTTACTCGATTGACATCAT
Found at i:35367293 original size:22 final size:22
Alignment explanation
Indices: 35367254--35367298 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
35367244 TCAACTTTCT
* *
35367254 TAATTAAGCTTTAATAAATCAC
1 TAATTAAGCTCTAATAAACCAC
35367276 TAATTAAGC-CTAATTAAACCAC
1 TAATTAAGCTCTAA-TAAACCAC
35367298 T
1 T
35367299 TTATTAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.33
Consensus pattern (22 bp):
TAATTAAGCTCTAATAAACCAC
Found at i:35367596 original size:56 final size:56
Alignment explanation
Indices: 35367510--35367628 Score: 229
Period size: 56 Copynumber: 2.1 Consensus size: 56
35367500 ATATCTACAA
35367510 AGTATTTTTCAGAATTATGGTCTCGAAACCATTGTTTCCGACACTACTGGAAATCG
1 AGTATTTTTCAGAATTATGGTCTCGAAACCATTGTTTCCGACACTACTGGAAATCG
35367566 AGTATTTTTCAGAATTATGGTCTCGAAACCATTGTTTCCGACACTACTGGAAATCG
1 AGTATTTTTCAGAATTATGGTCTCGAAACCATTGTTTCCGACACTACTGGAAATCG
35367622 AGCTATT
1 AG-TATT
35367629 ACATCATGAG
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 58 0.94
57 4 0.06
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (56 bp):
AGTATTTTTCAGAATTATGGTCTCGAAACCATTGTTTCCGACACTACTGGAAATCG
Found at i:35369981 original size:56 final size:56
Alignment explanation
Indices: 35369915--35370049 Score: 243
Period size: 56 Copynumber: 2.4 Consensus size: 56
35369905 ATAGGATTCT
* *
35369915 GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCC
*
35369971 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATGGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCC
35370027 GATATATGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
35370050 CTGTCTGGGA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCC
Found at i:35370067 original size:56 final size:56
Alignment explanation
Indices: 35369915--35370078 Score: 215
Period size: 56 Copynumber: 2.9 Consensus size: 56
35369905 ATAGGATTCT
* * * *
35369915 GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCC
* * *
35369971 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATGGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCC
**
35370027 GATATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGA
1 GATATATGTGTGCGAGTAAGACCAC-GTCTAAGAC-GTTGGCATCGATATGTGA
35370079 TTACATGAAA
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
55 1 0.01
56 96 0.98
57 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCC
Found at i:35372935 original size:46 final size:45
Alignment explanation
Indices: 35372838--35372942 Score: 138
Period size: 46 Copynumber: 2.3 Consensus size: 45
35372828 AGAAATGAGC
* * *
35372838 CATGTAAGTCCATATCAGATATATGGCTTTGGAGACTGGAATGGG
1 CATGTAAGTCCATATCAGATATATGGCATTGGAGACAGGAATAGG
* **
35372883 CTATGTAAGTCGATATCAGATATATGGCATTGGAGACAGGAATAATT
1 C-ATGTAAGTCCATATCAGATATATGGCATTGGAGACAGGAAT-AGG
35372930 CATGTAAGTCCAT
1 CATGTAAGTCCAT
35372943 GTCGAAGACA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.02
46 49 0.96
47 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (45 bp):
CATGTAAGTCCATATCAGATATATGGCATTGGAGACAGGAATAGG
Found at i:35387125 original size:39 final size:39
Alignment explanation
Indices: 35387075--35387206 Score: 210
Period size: 39 Copynumber: 3.4 Consensus size: 39
35387065 GTCTTTAGGC
*
35387075 CCGGATATATTTCTAGCACGTAGCCTGCGGACCGCAAGT
1 CCGGATATATTTCTAGCACGTAGCCTGCGGACCTCAAGT
* *
35387114 CCGGATTTATTTCTTGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCTAGCACGTAGCCTGCGGACCTCAAGT
*
35387153 CCGGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCTAGCACGTAGCCTGCGGACCTCAAGT
* *
35387192 TCGGATATGTTTCTA
1 CCGGATATATTTCTA
35387207 ACTATCATGC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCTAGCACGTAGCCTGCGGACCTCAAGT
Found at i:35394810 original size:10 final size:11
Alignment explanation
Indices: 35394795--35394828 Score: 54
Period size: 10 Copynumber: 3.3 Consensus size: 11
35394785 TAATCATCTA
35394795 CATATATAT-T
1 CATATATATAT
35394805 CATATATATAT
1 CATATATATAT
35394816 -ATATATATAT
1 CATATATATAT
35394826 CAT
1 CAT
35394829 TCTTTGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 19 0.86
11 3 0.14
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (11 bp):
CATATATATAT
Found at i:35395081 original size:39 final size:39
Alignment explanation
Indices: 35395036--35395163 Score: 238
Period size: 39 Copynumber: 3.3 Consensus size: 39
35395026 CTTTAGGCCT
*
35395036 GGATATATTTCTAGCACGTAGCCTGCGGACCTCAAGTCC
1 GGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
35395075 GGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
1 GGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
35395114 GGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
1 GGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
*
35395153 GGATATGTTTC
1 GGATATATTTC
35395164 TAAATATCAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GGATATATTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
Found at i:35407275 original size:15 final size:15
Alignment explanation
Indices: 35407255--35407319 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
35407245 TTCACTAAGC
35407255 TTACAATATATAATT
1 TTACAATATATAATT
*
35407270 TTACAATTTACATAATT
1 TTACAA--TATATAATT
** *
35407287 CAAAAAT-TAT-ATT
1 TTACAATATATAATT
*
35407300 TTACAAAATATAATT
1 TTACAATATATAATT
35407315 TTACA
1 TTACA
35407320 TTTGCAACAT
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
13 6 0.16
14 5 0.14
15 15 0.41
17 11 0.30
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAATATATAATT
Found at i:35410491 original size:77 final size:77
Alignment explanation
Indices: 35410377--35410652 Score: 400
Period size: 77 Copynumber: 3.6 Consensus size: 77
35410367 ATATGGAGAA
* * * *
35410377 TTATATCCGGG-TAAGTCTCGAAGGCATTCATGTTGGTGTTATATCCGGCTAAGTCCCGAAGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCA
35410441 TTCGTGCTGGTG
66 TTCGTGCTGGTG
* * *
35410453 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCGGGCTAAGTCCCAAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCA
35410518 TTCGTGCT-GTG
66 TTCGTGCTGGTG
* *
35410529 TTATATCCGGGCTAAGTCCCGAAGGCA--CGTGCTGGTGTTATATCGGGCTAAGTCCCGTAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCA
35410592 TTCGTGCTGGTG
66 TTCGTGCTGGTG
* * *
35410604 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTATTATATCCGG
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGG
35410653 GCTTAAAGTC
Statistics
Matches: 181, Mismatches: 14, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
74 41 0.23
75 16 0.09
76 53 0.29
77 71 0.39
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (77 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCA
TTCGTGCTGGTG
Found at i:35410612 original size:151 final size:152
Alignment explanation
Indices: 35410377--35410655 Score: 438
Period size: 151 Copynumber: 1.8 Consensus size: 152
35410367 ATATGGAGAA
* * *
35410377 TTATATCCGGGTAAGTCTCGAAGGCATTCATGTTGGTGTTATATCCGGCTAAGTCCCGAAGGTAT
1 TTATATCCGGGTAAGTCCCGAAGGCA-TCATGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCAT
*
35410442 TCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTGGTGTTATAT-CGGGCTA
65 TCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGC-TTTGTGCTGGTATTATATCCGGGCTA
35410505 AGTCCCAAAGGCATTCGTGCTGTG
129 AGTCCCAAAGGCATTCGTGCTGTG
* * *
35410529 TTATATCCGGGCTAAGTCCCGAAGGCA-CGTGCTGGTGTTATATCGGGCTAAGTCCCGTAGGCAT
1 TTATATCCGGG-TAAGTCCCGAAGGCATCATGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCAT
*
35410593 TCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGTAGGCTTTGTGCTGGTATTATATCCGGGCT
65 TCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTTGTGCTGGTATTATATCCGGGCT
35410656 TAAAGTCCGC
Statistics
Matches: 116, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
151 73 0.63
152 29 0.25
153 14 0.12
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (152 bp):
TTATATCCGGGTAAGTCCCGAAGGCATCATGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCATT
CGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTTGTGCTGGTATTATATCCGGGCTAAG
TCCCAAAGGCATTCGTGCTGTG
Found at i:35410675 original size:39 final size:39
Alignment explanation
Indices: 35410377--35410655 Score: 403
Period size: 38 Copynumber: 7.3 Consensus size: 39
35410367 ATATGGAGAA
* * *
35410377 TTATATCCGGG-TAAGTCTCGAAGGCATTCATGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
35410415 TTATATCC-GGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
35410453 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
35410492 TTATAT-CGGGCTAAGTCCCAAAGGCATTCGTGCT-GTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
35410529 TTATATCCGGGCTAAGTCCCGAAGGCA--CGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
35410566 TTATAT-CGGGCTAAGTCCCGTAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
35410604 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
35410643 TTATATCCGGGCT
1 TTATATCCGGGCT
35410656 TAAAGTCCGC
Statistics
Matches: 221, Mismatches: 12, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
36 25 0.11
37 20 0.09
38 100 0.45
39 63 0.29
40 13 0.06
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:35417066 original size:38 final size:39
Alignment explanation
Indices: 35416916--35417208 Score: 511
Period size: 39 Copynumber: 7.5 Consensus size: 39
35416906 TAATGGAGAA
35416916 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
35416955 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
35416994 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
35417033 TTATATCCGGGCTAAGTCCC-AAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
35417071 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
35417110 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
35417148 TTATATCCGGGCTAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
35417186 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
35417209 CATGCTTTGT
Statistics
Matches: 245, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
38 97 0.40
39 140 0.57
40 8 0.03
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:35417103 original size:77 final size:77
Alignment explanation
Indices: 35416916--35417207 Score: 505
Period size: 77 Copynumber: 3.8 Consensus size: 77
35416906 TAATGGAGAA
*
35416916 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCC-AAGGC
35416981 ATTCGTGCTGGTG
65 ATTCGTGCTGGTG
35416994 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCAAGGCA
35417059 TTCGTGCTGGTG
66 TTCGTGCTGGTG
* *
35417071 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCAAGGCA
35417136 TTCGTGCTGGTG
66 TTCGTGCTGGTG
* *
35417148 TTATATCCGGGCTAAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGCTTAAAGTCCC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGC-T-AAGTCCC
35417208 GCATGCTTTG
Statistics
Matches: 205, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
76 22 0.11
77 119 0.58
78 64 0.31
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.29
Consensus pattern (77 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCAAGGCA
TTCGTGCTGGTG
Found at i:35422648 original size:40 final size:40
Alignment explanation
Indices: 35422540--35422749 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
35422530 CGGGATTTAA
* * * * *
35422540 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
35422580 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35422620 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35422660 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35422700 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35422740 CCGGATATAT
1 CCGGATATAT
35422750 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:35430779 original size:40 final size:40
Alignment explanation
Indices: 35430671--35430920 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
35430661 CGGGATTTAA
* * * * *
35430671 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
35430711 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35430751 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35430791 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35430831 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35430871 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
35430911 CCGGATATAT
1 CCGGATATAT
35430921 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:35433189 original size:15 final size:15
Alignment explanation
Indices: 35433169--35433221 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
35433159 GTATCTTGGG
35433169 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
35433184 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
35433199 TTTCTCTA-TCTTGAA
1 TTTCTTTATTC-TGGA
35433214 TTTCTTTA
1 TTTCTTTA
35433222 CTCAGTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 2 0.06
15 30 0.94
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:35433199 original size:30 final size:30
Alignment explanation
Indices: 35433165--35433221 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35433155 TATCGTATCT
* *
35433165 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGAATTTCTTTATTC
35433195 TGGGTTTCTCTATCTTGAATTTCTTTA
1 TGGGTTTCTCTATCTTGAATTTCTTTA
35433222 CTCAGTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGAATTTCTTTATTC
Found at i:35435924 original size:46 final size:47
Alignment explanation
Indices: 35435817--35435952 Score: 159
Period size: 48 Copynumber: 2.9 Consensus size: 47
35435807 GTTATACGTG
* * *
35435817 TAACGTGGTGCTAAGTGGATACACCATGATTACACATATTGATACATGT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGAT--ATGT
* *
35435866 T-ACGTGGCGCTAAGTGGATATACCACGGTTACATATATTGAT-TGT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATATGT
* * * *
35435911 TAACGTGGTGCTAAGTGGATATGCTACGGTTATACATGTTGA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGA
35435953 ATTTGAAAAG
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
45 4 0.05
46 34 0.45
48 36 0.48
49 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATATGT
Found at i:35437035 original size:10 final size:10
Alignment explanation
Indices: 35437020--35437047 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
35437010 GTCGATAAAC
35437020 TTCAAGTGTT
1 TTCAAGTGTT
35437030 TTCAAGTGTT
1 TTCAAGTGTT
35437040 TTCAAGTG
1 TTCAAGTG
35437048 AGTGGCATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.46
Consensus pattern (10 bp):
TTCAAGTGTT
Found at i:35441105 original size:47 final size:47
Alignment explanation
Indices: 35440965--35441332 Score: 576
Period size: 47 Copynumber: 7.7 Consensus size: 47
35440955 TTAAGATTTT
35440965 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35441014 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35441063 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
35441110 ATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35441157 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
35441204 ATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
35441251 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
35441298 ACGTGATTG-ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGA-TGAATGTGAAAGTGTATATATGTGATAAG
35441333 TCCCAAAGGG
Statistics
Matches: 303, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 232 0.77
48 2 0.01
49 69 0.23
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:35446902 original size:2 final size:2
Alignment explanation
Indices: 35446895--35446964 Score: 122
Period size: 2 Copynumber: 35.0 Consensus size: 2
35446885 AAGTATATTC
* *
35446895 AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35446937 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35446965 GAATGCTTGT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:35451297 original size:42 final size:43
Alignment explanation
Indices: 35451238--35451348 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
35451228 AATTTACGTG
* *
35451238 TAAGACCATGTCTGGGACATTGGCATCG-TATCTG-ATTTCATA
1 TAAGACCCTGTCTGGGACATTGGCATCGATA-CTGAATTACATA
** * *
35451280 TAAGACCCTGTCTGGGACAAAGGCATTGATACTGAATTACATG
1 TAAGACCCTGTCTGGGACATTGGCATCGATACTGAATTACATA
35451323 TAAGACCAC-GTCTGGGACATTGGCAT
1 TAAGACC-CTGTCTGGGACATTGGCAT
35451349 TAAACTCGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 27 0.47
43 30 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACATTGGCATCGATACTGAATTACATA
Found at i:35451348 original size:43 final size:42
Alignment explanation
Indices: 35451231--35451349 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
35451221 GATTTGAAAT
* * *
35451231 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
1 TTACATGTAAGACCACGTCTGGGACATTGGCATTGTATCTGA
* * **
35451273 TTTCATATAAGACC-CTGTCTGGGACAAAGGCATTG-ATACTGAA
1 TTACATGTAAGACCAC-GTCTGGGACATTGGCATTGTAT-CTG-A
35451316 TTACATGTAAGACCACGTCTGGGACATTGGCATT
1 TTACATGTAAGACCACGTCTGGGACATTGGCATT
35451350 AAACTCGTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.03
42 30 0.48
43 29 0.47
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACATTGGCATTGTATCTGA
Found at i:35453672 original size:49 final size:49
Alignment explanation
Indices: 35453492--35453685 Score: 212
Period size: 49 Copynumber: 3.9 Consensus size: 49
35453482 TCTATTGTGA
* *
35453492 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTG-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGTT
* * * * * ** *
35453543 GATAACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACT-GT-T
* *
35453593 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGTT
*
35453642 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
35453686 TAGCTTCGGC
Statistics
Matches: 120, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 41 0.34
50 41 0.34
51 34 0.28
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGTT
Found at i:35458361 original size:46 final size:46
Alignment explanation
Indices: 35458294--35458418 Score: 182
Period size: 46 Copynumber: 2.7 Consensus size: 46
35458284 TGTAACCCGC
* * *
35458294 CCATAAGCGAGCTCGGACTCAACTCAACGA-TCTCGGGA-GTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGT-T-GGGACGTTCGCAT
*
35458340 CCATAAGTGAACTCAGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTGGGACGTTCGCAT
35458386 CCATAAGTGAACTCAGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTT
35458419 CGGATGCCCA
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
45 3 0.04
46 69 0.95
47 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTGGGACGTTCGCAT
Found at i:35471732 original size:22 final size:22
Alignment explanation
Indices: 35471683--35471738 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
35471673 TACCTAAAGT
** * *
35471683 AGTTTCAGATTATTCTAATCAT
1 AGTTTCAGAAAATTCTAAACAG
*
35471705 ATTTTCAGAAAATTCTAAACAG
1 AGTTTCAGAAAATTCTAAACAG
35471727 AGTTTCAGAAAA
1 AGTTTCAGAAAA
35471739 CTTACAGGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (22 bp):
AGTTTCAGAAAATTCTAAACAG
Found at i:35474417 original size:51 final size:48
Alignment explanation
Indices: 35474298--35474492 Score: 219
Period size: 49 Copynumber: 3.9 Consensus size: 48
35474288 TAGCAAAAGC
*
35474298 TATCTGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTAC-CATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * * *
35474347 TATCCGGTACCTTTAGTAGCCTACACTTAGTACTGCACACGTGATCGAAGT
1 TATCTGGTACC-ATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* *
35474398 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTAC-CATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
35474447 AATCTGGTACACGTAGTAACCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTAC-CATAGTAGCCTGCACTTAGTACTACACACGCGACC
35474493 TCACGATAGA
Statistics
Matches: 121, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 76 0.63
50 6 0.05
51 37 0.31
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
TATCTGGTACCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:35474438 original size:100 final size:100
Alignment explanation
Indices: 35474298--35474490 Score: 298
Period size: 100 Copynumber: 1.9 Consensus size: 100
35474288 TAGCAAAAGC
* * * *
35474298 TATCTGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAC-CTTTA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACAC-GTA
* *
35474362 GTAGCCTACACTTAGTACTGCACACGTGATCGAAGT
65 GTAACCTACACTTAGTACTACACACGTGATCGAAGT
*
35474398 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
*
35474463 TAACCTGCACTTAGTACTACACACGTGA
66 TAACCTACACTTAGTACTACACACGTGA
35474491 CCTCACGATA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 83 0.99
101 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
TAACCTACACTTAGTACTACACACGTGATCGAAGT
Found at i:35478701 original size:49 final size:49
Alignment explanation
Indices: 35478635--35478810 Score: 226
Period size: 49 Copynumber: 3.6 Consensus size: 49
35478625 ATCTGATACG
**
35478635 CATAGTAGCCTATACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
* ** * * * * *
35478684 CGTAGTAGCCTGCACTTAGTACTGTACACGTGATCAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TTATCCGGTACA
* * *
35478734 CATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATTCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
35478783 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
35478811 CGTGACCTCA
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 64 0.62
50 40 0.38
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
Found at i:35478791 original size:99 final size:99
Alignment explanation
Indices: 35478620--35478815 Score: 302
Period size: 99 Copynumber: 2.0 Consensus size: 99
35478610 CTTGTAGCAA
* * *
35478620 AAGTTATCTGATACGCATAGTAGCCTATACTTAGTACTACACATGCGACCAATTATCCGGTACAC
1 AAGTTATCGGATACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGGTACAC
* **
35478685 GTAGTAGCCTGCACTTAGTACTGTACACGTGATC
66 ATAGTAGCCTGCACTTAGTACTACACACGTGATC
* * * *
35478719 AAGTTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATTCGGTACAC
1 AAGTTATCGGATACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGGTACAC
35478784 ATAGTAGCCTGCACTTAGTACTACACACGTGA
66 ATAGTAGCCTGCACTTAGTACTACACACGTGA
35478816 CCTCACAATA
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 87 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (99 bp):
AAGTTATCGGATACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGGTACAC
ATAGTAGCCTGCACTTAGTACTACACACGTGATC
Found at i:35481425 original size:46 final size:45
Alignment explanation
Indices: 35481375--35481549 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
35481365 ACAATGTTTA
*
35481375 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACGTCTCGAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTT-CGTCTCAAT
**
35481421 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACCCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGC-TTCGTCTCAAT
* * * * * *
35481467 GTCAATGCTATTTCCCAGACATGTTCTTACACTGGC-TC-TCATAATAT
1 GCCGATGC-ATGTCCCAAACATG-TCTTACACTAGCTTCGTC-TCA-AT
*
35481514 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 -GCCGATGCATGTCCCAAACATGTCTTACACTAGCT
35481550 CACACAAGTG
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.02
46 62 0.57
47 27 0.25
48 17 0.16
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTCGTCTCAAT
Found at i:35481922 original size:30 final size:29
Alignment explanation
Indices: 35481872--35481930 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
35481862 AAATTTACAT
* * *
35481872 CTTTGGTAAAATGACTATTTTGCCTCTTAA
1 CTTTGGCAAAATGACCATTTTACC-CTTAA
*
35481902 CTTTGGCAAACTGACCATTTTACCCTTAA
1 CTTTGGCAAAATGACCATTTTACCCTTAA
35481931 GCTCGAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (29 bp):
CTTTGGCAAAATGACCATTTTACCCTTAA
Found at i:35484565 original size:16 final size:17
Alignment explanation
Indices: 35484544--35484575 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
35484534 GCCCATTACA
35484544 TAAACCCCA-AAAGACC
1 TAAACCCCATAAAGACC
35484560 TAAACCCCATAAAGAC
1 TAAACCCCATAAAGAC
35484576 TCATTAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (17 bp):
TAAACCCCATAAAGACC
Found at i:35496786 original size:43 final size:42
Alignment explanation
Indices: 35496678--35496787 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
35496668 GACTTATGAT
* *
35496678 TTACGTGTAAGACCACATTTGGGACATTGCCATCGCATTTGA
1 TTACGTGTAAGACCACGTTTGGGACAGTGCCATCGCATTTGA
** ** * * * *
35496720 TTTTGTGTAAGACCTTGTCTGGGACAGTGTCATTGATATTTGA
1 TTACGTGTAAGACCACGTTTGGGACAGTGCCATCG-CATTTGA
*
35496763 TTACATGTAAGACCACGTTTGGGAC
1 TTACGTGTAAGACCACGTTTGGGAC
35496788 GCTGGCATTG
Statistics
Matches: 51, Mismatches: 16, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTTTGGGACAGTGCCATCGCATTTGA
Found at i:35501957 original size:42 final size:42
Alignment explanation
Indices: 35501894--35502016 Score: 165
Period size: 42 Copynumber: 2.9 Consensus size: 42
35501884 TACGTGTATT
* * *
35501894 GATGCTAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATC
1 GATGCT-ATATCCCAGATATGGTCTTACACGAAATCTCATATC
* * *
35501937 GATGCTATATCCCAGTTATGGTCTTACACGAAATTTCATCTC
1 GATGCTATATCCCAGATATGGTCTTACACGAAATCTCATATC
* *
35501979 GATGCCATATCCTAGATATGGTCTTACACGAAATCTCA
1 GATGCTATATCCCAGATATGGTCTTACACGAAATCTCA
35502017 GTAACCCTAA
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 65 0.92
43 6 0.08
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
GATGCTATATCCCAGATATGGTCTTACACGAAATCTCATATC
Found at i:35502185 original size:46 final size:46
Alignment explanation
Indices: 35502118--35502212 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
35502108 AGTATTGTAC
35502118 TCAATAGAATTCACATTTCATTTCAATAATATAGCATTTAACACAA
1 TCAATAGAATTCACATTTCATTTCAATAATATAGCATTTAACACAA
* *
35502164 TCAATAGCATTCACATTTCATTTCAATAATATAGCATTTACCACAA
1 TCAATAGAATTCACATTTCATTTCAATAATATAGCATTTAACACAA
35502210 TCA
1 TCA
35502213 TATCAATTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.35
Consensus pattern (46 bp):
TCAATAGAATTCACATTTCATTTCAATAATATAGCATTTAACACAA
Found at i:35508534 original size:39 final size:39
Alignment explanation
Indices: 35508480--35508642 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
35508470 TGTGAATGAA
35508480 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
35508519 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
35508558 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
35508597 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
35508637 TGTGCG
1 TGTGCG
35508643 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:35508658 original size:40 final size:39
Alignment explanation
Indices: 35508480--35508672 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
35508470 TGTGAATGAA
* *
35508480 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
35508519 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
35508558 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
35508597 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
35508637 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
35508673 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:35516469 original size:39 final size:39
Alignment explanation
Indices: 35516415--35516577 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
35516405 TGTGAATGAA
35516415 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
35516454 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
35516493 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
35516532 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
35516572 TGTGCG
1 TGTGCG
35516578 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:35516593 original size:40 final size:39
Alignment explanation
Indices: 35516415--35516607 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
35516405 TGTGAATGAA
* *
35516415 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
35516454 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
35516493 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
35516532 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
35516572 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
35516608 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:35527693 original size:40 final size:39
Alignment explanation
Indices: 35527543--35527695 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
35527533 GAATGTTCGA
*
35527543 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
35527582 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
35527621 ATGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
35527660 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
35527696 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:35527711 original size:40 final size:39
Alignment explanation
Indices: 35527544--35527726 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
35527534 AATGTTCGAG
* *
35527544 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
35527583 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
35527622 TGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
35527661 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
35527701 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
35527727 GTTTGAACGA
Statistics
Matches: 129, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.68
40 41 0.32
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:35530276 original size:29 final size:29
Alignment explanation
Indices: 35530135--35530273 Score: 165
Period size: 29 Copynumber: 4.8 Consensus size: 29
35530125 CATACATGCG
*
35530135 TATGGCCCACTTA-GCCC-AATCTCATTTA
1 TATGGCCCA-TTAGGCCCAAATCACATTTA
* * *
35530163 TATGGCCCATCAGGCCCAATTCACATTCA
1 TATGGCCCATTAGGCCCAAATCACATTTA
* * * * *
35530192 CATGGCCCATCAGGCCCAATTCATATTCA
1 TATGGCCCATTAGGCCCAAATCACATTTA
*
35530221 TATGGCCCATTAGGCCCAAATCACCTTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
35530250 TATGGCCCATTAGGCCCAAATCAC
1 TATGGCCCATTAGGCCCAAATCAC
35530274 CTTATATTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
27 2 0.02
28 13 0.13
29 82 0.85
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTTA
Done.