Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 123 of 770
Found at i:35934377 original size:19 final size:19
Alignment explanation
Indices: 35934342--35934398 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 19
35934332 TTTTAAAAGA
*
35934342 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
35934360 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
35934378 TAGAAATTATTTTGAATTTT
1 TATAAA-TATTTTGAATTTT
35934398 T
1 T
35934399 GTAATTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 15 0.44
19 15 0.44
20 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:35934404 original size:19 final size:19
Alignment explanation
Indices: 35934347--35934404 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
35934337 AAAGATATAA
* *
35934347 ATTTTGGAATTTTTATAAAT
1 ATTTT-GAATTTTTGTAATT
* *
35934367 ATTTTGAATTTTAGAAATT
1 ATTTTGAATTTTTGTAATT
35934386 ATTTTGAATTTTTGTAATT
1 ATTTTGAATTTTTGTAATT
35934405 TTTGTTGAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 27 0.84
20 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (19 bp):
ATTTTGAATTTTTGTAATT
Found at i:35935619 original size:6 final size:6
Alignment explanation
Indices: 35935603--35935645 Score: 77
Period size: 6 Copynumber: 7.0 Consensus size: 6
35935593 GTAAAATATT
35935603 TTTTTA TTTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
35935646 AAATATTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 30 0.83
7 6 0.17
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:35936679 original size:28 final size:28
Alignment explanation
Indices: 35936639--35936694 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
35936629 TTTCTGCTTT
35936639 TGACTACTCTATTTAGGTCTATCCACTA
1 TGACTACTCTATTTAGGTCTATCCACTA
35936667 TGACTACTCTATTTAGGTCTATCCACTA
1 TGACTACTCTATTTAGGTCTATCCACTA
35936695 CGTATAGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (28 bp):
TGACTACTCTATTTAGGTCTATCCACTA
Found at i:35939944 original size:20 final size:19
Alignment explanation
Indices: 35939895--35939949 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
35939885 TGGGTATCAA
35939895 AATATTTATCAATA-TTTT
1 AATATTTATCAATATTTTT
* *
35939913 AACACTTAATCAATATTTTT
1 AATA-TTTATCAATATTTTT
35939933 AAGTATTTATCAATATT
1 AA-TATTTATCAATATT
35939950 GATAATGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 3 0.10
19 9 0.30
20 17 0.57
21 1 0.03
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (19 bp):
AATATTTATCAATATTTTT
Found at i:35940527 original size:17 final size:16
Alignment explanation
Indices: 35940505--35940536 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
35940495 ATCATATGTA
35940505 TAATAATTATATAAATT
1 TAATAATTATA-AAATT
35940522 TAATAATTATAAAAT
1 TAATAATTATAAAAT
35940537 CTAGAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAATAATTATAAAATT
Found at i:35941858 original size:18 final size:18
Alignment explanation
Indices: 35941835--35941883 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
35941825 ATTTTATATT
35941835 TTTAAAATTAATTTTTAA
1 TTTAAAATTAATTTTTAA
* *
35941853 TTTAAAA-AATATTTTTTA
1 TTTAAAATTA-ATTTTTAA
*
35941871 TTTAAATTTAATT
1 TTTAAAATTAATT
35941884 ACAAAAATCC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTAAAATTAATTTTTAA
Found at i:35941868 original size:19 final size:19
Alignment explanation
Indices: 35941823--35941876 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
35941813 TTTTTAATTG
* * *
35941823 ATATTTTATATTTTTAAAA
1 ATATTTTTTAATTTAAAAA
* *
35941842 TTAATTTTTAATTTAAAAA
1 ATATTTTTTAATTTAAAAA
35941861 ATATTTTTT-ATTTAAA
1 ATATTTTTTAATTTAAA
35941877 TTTAATTACA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTTTTTAATTTAAAAA
Found at i:35942694 original size:28 final size:28
Alignment explanation
Indices: 35942653--35942719 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
35942643 ATCTCTACAG
*
35942653 AAAATAAAAGAGGATTTAAATTCAATTA
1 AAAATAAAATAGGATTTAAATTCAATTA
* **
35942681 AAAATAAAATAGGATTTTAATTTGATTA
1 AAAATAAAATAGGATTTAAATTCAATTA
35942709 AAAATAAAATA
1 AAAATAAAATA
35942720 AAATCAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.31
Consensus pattern (28 bp):
AAAATAAAATAGGATTTAAATTCAATTA
Found at i:35942739 original size:15 final size:16
Alignment explanation
Indices: 35942709--35942743 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
35942699 AATTTGATTA
35942709 AAAATAAAATAAAATC
1 AAAATAAAATAAAATC
*
35942725 AAAATAACA-AAAATC
1 AAAATAAAATAAAATC
35942740 AAAA
1 AAAA
35942744 AAATCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAATAAAATAAAATC
Found at i:35942744 original size:16 final size:17
Alignment explanation
Indices: 35942708--35942744 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
35942698 TAATTTGATT
35942708 AAAAATAAAATAAAATC
1 AAAAATAAAATAAAATC
*
35942725 -AAAATAACA-AAAATC
1 AAAAATAAAATAAAATC
35942740 AAAAA
1 AAAAA
35942745 AATCAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAATAAAATAAAATC
Found at i:35943804 original size:45 final size:44
Alignment explanation
Indices: 35943739--35943825 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 44
35943729 ATTAGTAGCA
*
35943739 TACATATCCAAACTAACTAGAATAAATCACTAAAAACATGTTCT
1 TACATATCAAAACTAACTAGAATAAATCACTAAAAACATGTTCT
* *
35943783 TACATATCAAAAATTAACTAGAATAAATCACTAAAAATATGTT
1 TACATATC-AAAACTAACTAGAATAAATCACTAAAAACATGTT
35943826 GATTAAGCGC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 8 0.21
45 31 0.79
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.29
Consensus pattern (44 bp):
TACATATCAAAACTAACTAGAATAAATCACTAAAAACATGTTCT
Found at i:35946802 original size:23 final size:22
Alignment explanation
Indices: 35946766--35946811 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
35946756 AATAAAATAA
* *
35946766 TAAAATAATCATAAATATCTTAT
1 TAAAATAATAATAAA-ATATTAT
*
35946789 TAAAATATTAATAAAATATTAT
1 TAAAATAATAATAAAATATTAT
35946811 T
1 T
35946812 TATCTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAAATAATAATAAAATATTAT
Found at i:35949729 original size:26 final size:26
Alignment explanation
Indices: 35949692--35949775 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
35949682 TGATACAAAT
* *
35949692 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
35949718 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
35949744 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
35949770 TGATAA
1 TGATAA
35949776 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:35955479 original size:26 final size:26
Alignment explanation
Indices: 35955442--35955525 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
35955432 TGATACAAAT
* *
35955442 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
35955468 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
35955494 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
35955520 TGATAA
1 TGATAA
35955526 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:35960586 original size:131 final size:131
Alignment explanation
Indices: 35960324--35960583 Score: 380
Period size: 131 Copynumber: 2.0 Consensus size: 131
35960314 AATTTAGAGA
* * * * *
35960324 ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCTAGCAC
1 ACATGAGTCAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATCACAACCCAGCAC
* * * *
35960389 GATAGGGCACGGTTCCTCGAATTGCCAAACATCGAGTATTACCTTTGTTTTGAAGAGTTTTTAAA
66 GATAGAGCACGATTCCTCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
35960454 G
131 G
* *
35960455 ACATGAGTCAAATTCCAAAGGAATATTCAATTGTTTTGAACAAACGGGAAATCACAACCCAGCAC
1 ACATGAGTCAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATCACAACCCAGCAC
* *
35960520 GATAGAGCACGATT-CTCGAATTTCCAAACATCGAGTATTGCCTTCGTTTT-AGAGAATTTTTAA
66 GATAGAGCACGATTCCTCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGA-AGAATTTTTAA
35960583 A
130 A
35960584 AGAATACTTA
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
129 1 0.01
130 44 0.38
131 70 0.61
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (131 bp):
ACATGAGTCAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATCACAACCCAGCAC
GATAGAGCACGATTCCTCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
G
Found at i:35963081 original size:18 final size:18
Alignment explanation
Indices: 35963060--35963154 Score: 65
Period size: 17 Copynumber: 5.4 Consensus size: 18
35963050 AAAAACTATT
35963060 TAAAATTTCAAAATATAA
1 TAAAATTTCAAAATATAA
* *
35963078 T-AAACTT-AAAA-ATAT
1 TAAAATTTCAAAATATAA
* *
35963093 TAAAAATTCAAAAAAT-A
1 TAAAATTTCAAAATATAA
* *
35963110 TAAAAGTTTCCAGATATATA
1 TAAAA-TTTCAAAATATA-A
* *
35963130 TAAAAATTCAAAATATTA
1 TAAAATTTCAAAATATAA
35963148 -AAAATTT
1 TAAAATTT
35963155 AATACACATT
Statistics
Matches: 58, Mismatches: 13, Indels: 13
0.69 0.15 0.15
Matches are distributed among these distances:
15 4 0.07
16 9 0.16
17 20 0.34
18 11 0.19
19 8 0.14
20 6 0.10
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (18 bp):
TAAAATTTCAAAATATAA
Found at i:35964215 original size:28 final size:28
Alignment explanation
Indices: 35964175--35964231 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
35964165 TTCAGAACAA
35964175 ATTTAATATTCCAACATCAATTCCACAT
1 ATTTAATATTCCAACATCAATTCCACAT
35964203 ATTTAATATTCCAACATCAATTCCACAT
1 ATTTAATATTCCAACATCAATTCCACAT
35964231 A
1 A
35964232 CTCATGGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (28 bp):
ATTTAATATTCCAACATCAATTCCACAT
Found at i:35968818 original size:33 final size:33
Alignment explanation
Indices: 35968780--35968854 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 33
35968770 TAATACGCTT
* * *
35968780 GATTTCCAACAGCAGATACAACAGCAAACTGTA
1 GATTTCCAACAGCAAATACAACAGAAAACTCTA
* * *
35968813 GATTTCCAACAGCAAATATAACGGAAAACTCTT
1 GATTTCCAACAGCAAATACAACAGAAAACTCTA
35968846 GATTTCCAA
1 GATTTCCAA
35968855 AATGAAACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.23
Consensus pattern (33 bp):
GATTTCCAACAGCAAATACAACAGAAAACTCTA
Found at i:35970296 original size:17 final size:16
Alignment explanation
Indices: 35970256--35970297 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
35970246 GCAACCTAAT
35970256 TTTTTATTTTTCTTTA
1 TTTTTATTTTTCTTTA
35970272 TTTATTATTTTAT-TTTA
1 TTT-TTATTTT-TCTTTA
35970289 TTATTTATT
1 TT-TTTATT
35970298 ACTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 18 0.78
18 2 0.09
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTATTTTTCTTTA
Found at i:35970307 original size:20 final size:20
Alignment explanation
Indices: 35970269--35970307 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
35970259 TTATTTTTCT
*
35970269 TTATTTATTATTTTATTTTA
1 TTATTTATTACTTTATTTTA
*
35970289 TTATTTATTACTTTCTTTT
1 TTATTTATTACTTTATTTT
35970308 GTTTGGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATTTATTACTTTATTTTA
Found at i:35976196 original size:27 final size:27
Alignment explanation
Indices: 35976166--35976221 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
35976156 CTGCCACGTC
35976166 ATGTTGGTGGACAATAGGACATTTTCT
1 ATGTTGGTGGACAATAGGACATTTTCT
35976193 ATGTTGGTGGACAATAGGACATTTTCT
1 ATGTTGGTGGACAATAGGACATTTTCT
35976220 AT
1 AT
35976222 AAATACAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (27 bp):
ATGTTGGTGGACAATAGGACATTTTCT
Found at i:35979186 original size:31 final size:31
Alignment explanation
Indices: 35979117--35979194 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
35979107 TTTTAAAATA
* * *
35979117 ACTAATAATCCAATGACTTAAATAAAAAGTT
1 ACTAATAATTCAATGAATTAAATAAAAACTT
* *
35979148 ACAAATAATTCAATGAATTAAATGAAAACTT
1 ACTAATAATTCAATGAATTAAATAAAAACTT
*
35979179 TCTAATAACTT-AATGA
1 ACTAATAA-TTCAATGA
35979195 TATTTTATAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 37 0.95
32 2 0.05
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (31 bp):
ACTAATAATTCAATGAATTAAATAAAAACTT
Found at i:35980159 original size:13 final size:13
Alignment explanation
Indices: 35980143--35980181 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
35980133 TTTTAGCTTC
*
35980143 TACTTTTCATAAG
1 TACTTTTCAAAAG
35980156 TACTTTTCAAAAG
1 TACTTTTCAAAAG
*
35980169 CACTTTTGCAAAA
1 TACTTTT-CAAAA
35980182 TCAAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (13 bp):
TACTTTTCAAAAG
Found at i:35987077 original size:16 final size:18
Alignment explanation
Indices: 35987038--35987071 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35987028 AAAGTTTATA
35987038 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
35987055 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
35987072 AATTTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:35987165 original size:16 final size:18
Alignment explanation
Indices: 35987146--35987184 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
35987136 CGATAAATAA
35987146 AAAATAAA-ATA-ATATT
1 AAAATAAATATATATATT
*
35987162 AAAATAAATATATTTATT
1 AAAATAAATATATATATT
35987180 AAAAT
1 AAAAT
35987185 TTTAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 3 0.15
18 9 0.45
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATAAATATATATATT
Found at i:35989950 original size:46 final size:46
Alignment explanation
Indices: 35989897--35990068 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
35989887 CTTGTGTGTG
*
35989897 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGAAT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAAT
* * * *
35989943 CTAGTGTAAGACCATATTTGAGACATAGCATCGG-CAC-TGA-GATGAGT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATGATG--GAAT
* * *
35989990 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAG
1 -CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGGAAT
*
35990037 CCAGTGTAAGACATGTCTGGGACATGCATCGG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGG
35990069 TTACGAGATG
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
45 1 0.01
46 51 0.49
47 31 0.30
48 20 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGAAT
Found at i:35990114 original size:140 final size:139
Alignment explanation
Indices: 35989899--35990203 Score: 343
Period size: 140 Copynumber: 2.2 Consensus size: 139
35989889 TGTGTGTGCT
* * *
35989899 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGGAATCTAGTGTAAGACCATATTTGA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGG-ATCTAATGTAAAACCATATTTGA
* * *
35989964 GACATAGCATCGGCAC-TGAGATGA-GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCC
65 GACATAGCATC-G-ACTTGAGAT-ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GAC
*
35990025 TCGAGATGTAAGCC
126 TCGAGATATAAGCC
* * *
35990039 AGTGTAAGACATGTCTGGGACATGCATCGGTTACGAGATGATGG-TC-AATGTAAAACCATGTTT
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CCACATGATGGATCTAATGTAAAACCATATTT
* * * *
35990102 GGGACATGGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATGGGATCGACTT
63 GAGACATAGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTC
*
35990167 GAGATATAAGCT
128 GAGATATAAGCC
*
35990179 AATGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
35990204 GCATTGGCAT
Statistics
Matches: 141, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
138 3 0.02
139 19 0.13
140 90 0.64
141 21 0.15
143 8 0.06
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (139 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGGATCTAATGTAAAACCATATTTGAG
ACATAGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAG
ATATAAGCC
Found at i:35990124 original size:47 final size:45
Alignment explanation
Indices: 35989995--35990207 Score: 193
Period size: 47 Copynumber: 4.6 Consensus size: 45
35989985 TGAGTGCTAG
* * * * *
35989995 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGA--TATGGCAA
*
35990041 TGTAAGA-CATGTCTGGGACAT-GCATCG-GTTACGAGATGATGGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTT--GAGAT-ATGG-CAA
* * *
35990087 TGTAAAACCATGTTTGGGACATGGCATCGACTTGAGATATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATG-G-CAA
* *
35990134 TGTAAGACCATGTCTGGGACATGGGATCGACTTGAGATATAAGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT-GGC-AA
35990181 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
35990208 TGGCATCTTA
Statistics
Matches: 141, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
44 2 0.01
45 3 0.02
46 42 0.30
47 86 0.61
48 6 0.04
49 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGGCAA
Found at i:35990185 original size:94 final size:93
Alignment explanation
Indices: 35989981--35990207 Score: 243
Period size: 94 Copynumber: 2.4 Consensus size: 93
35989971 CATCGGCACT
* * * *
35989981 GAGATGAGTGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTG
1 GAGATGA-TGCTCAATGTAAAACCATGTCTGGGACATGGCATCGGACTCGAGATATAAGCCAGTG
*
35990043 TAAGACATGTCTGGGACATGCATCGGTTA
65 TAAGACATGTCTGGGACATGCATCGCTTA
* * * *
35990072 CGAGATGATGGTCAATGTAAAACCATGTTTGGGACATGGCATC-GACTTGAGATATGAGCCAGTG
1 -GAGATGATGCTCAATGTAAAACCATGTCTGGGACATGGCATCGGACTCGAGATATAAGCCAGTG
*
35990136 TAAGACCATGTCTGGGACATGGGATCGACTT-
65 TAAGA-CATGTCTGGGACAT-GCATCG-CTTA
*
35990167 GAGAT-ATAAGCT-AATGTAAGACCATGTCTGGGACATGGCAT
1 GAGATGAT--GCTCAATGTAAAACCATGTCTGGGACATGGCAT
35990208 TGGCATCTTA
Statistics
Matches: 114, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
91 3 0.03
92 14 0.12
93 37 0.32
94 51 0.45
95 7 0.06
96 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (93 bp):
GAGATGATGCTCAATGTAAAACCATGTCTGGGACATGGCATCGGACTCGAGATATAAGCCAGTGT
AAGACATGTCTGGGACATGCATCGCTTA
Found at i:35991856 original size:6 final size:6
Alignment explanation
Indices: 35991845--35991880 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
35991835 AAGGTTGTGA
35991845 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
35991881 ACGTAGTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (6 bp):
TCGTGG
Found at i:35998335 original size:11 final size:11
Alignment explanation
Indices: 35998313--35998346 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
35998303 AAAAGAGCAG
35998313 AGAAAGAAAGAA
1 AGAAAG-AAGAA
*
35998325 AGAAAGTAGAA
1 AGAAAGAAGAA
35998336 AGAAAGAAGAA
1 AGAAAGAAGAA
35998347 GCAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (11 bp):
AGAAAGAAGAA
Found at i:36002360 original size:21 final size:20
Alignment explanation
Indices: 36002336--36002374 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36002326 TTTACCTACA
36002336 TAAAAAACAAAAAATTTATGT
1 TAAAAAA-AAAAAATTTATGT
* *
36002357 TAAAATAATAAAATTTAT
1 TAAAAAAAAAAAATTTAT
36002375 CAAAACAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
TAAAAAAAAAAAATTTATGT
Found at i:36016517 original size:22 final size:23
Alignment explanation
Indices: 36016492--36016541 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
36016482 AGGTTAAGGT
*
36016492 GGGTTAGG-GTTTTTATGGTTTA
1 GGGTTAGGAGTTTTTAGGGTTTA
*
36016514 GGGTTAGGATTTTTTAGGGTTTA
1 GGGTTAGGAGTTTTTAGGGTTTA
*
36016537 TGGTT
1 GGGTT
36016542 TTTGTAAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (23 bp):
GGGTTAGGAGTTTTTAGGGTTTA
Found at i:36016588 original size:26 final size:26
Alignment explanation
Indices: 36016557--36016620 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
36016547 AAGGGTTTAC
36016557 TTAATTAAATTAGGGTGTAAGATTAA
1 TTAATTAAATTAGGGTGTAAGATTAA
36016583 TTAATTAAATTAGGGTGTAAGATTAA
1 TTAATTAAATTAGGGTGTAAGATTAA
36016609 TTAATTAAATTA
1 TTAATTAAATTA
36016621 AATATTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.41
Consensus pattern (26 bp):
TTAATTAAATTAGGGTGTAAGATTAA
Found at i:36016643 original size:16 final size:17
Alignment explanation
Indices: 36016604--36016644 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
36016594 AGGGTGTAAG
36016604 ATTAATTAATTAAATTAA
1 ATTAATTAATTAAA-TAA
36016622 A-T-ATTAATTAAA-AA
1 ATTAATTAATTAAATAA
36016636 ATTAATTAA
1 ATTAATTAA
36016645 ATTCGGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.14
15 1 0.05
16 15 0.71
17 1 0.05
18 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTAATTAATTAAATAA
Found at i:36016943 original size:125 final size:125
Alignment explanation
Indices: 36016719--36016970 Score: 355
Period size: 125 Copynumber: 2.0 Consensus size: 125
36016709 TAATTTTTTG
* *
36016719 GTTTTTTTTCTTCAGTAGTATCTGGAAAAAAAATTTTAAGAAGAAGTTTCTGAAGAAATAGTATC
1 GTTTTTTTTCTACAGTAGTATCT-GAAAAAAAATTTTAAGAAGAAGTTTCTGAAGAAATAGTATA
* * * *
36016784 CAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAATGCTCCCATGTGGAC
65 AAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGAC
* * * *
36016845 GTTTTTTTTCTACAGTGGTATCT-AAGAAAATAATTTTGAGAAGACGTTTCTGAA-AAATAGTGT
1 GTTTTTTTTCTACAGTAGTATCTGAA-AAAA-AATTTTAAGAAGAAGTTTCTGAAGAAATAGTAT
* *
36016908 AAAAAATGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGAC
64 AAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGAC
36016970 G
1 G
36016971 CTCTTTTTGT
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
124 2 0.02
125 68 0.61
126 42 0.38
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (125 bp):
GTTTTTTTTCTACAGTAGTATCTGAAAAAAAATTTTAAGAAGAAGTTTCTGAAGAAATAGTATAA
AAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGAC
Found at i:36018059 original size:19 final size:19
Alignment explanation
Indices: 36018037--36018094 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
36018027 AATTTAAGTA
36018037 ATATAATGTTATTTATATG
1 ATATAATGTTATTTATATG
* *
36018056 ATATGATG--A-TTATTATC
1 ATATAATGTTATTTA-TATG
36018073 AT-TAATGTTATTTATATG
1 ATATAATGTTATTTATATG
36018091 ATAT
1 ATAT
36018095 GAAGATTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 7 0.23
17 6 0.20
18 6 0.20
19 11 0.37
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (19 bp):
ATATAATGTTATTTATATG
Found at i:36018079 original size:35 final size:35
Alignment explanation
Indices: 36018040--36018106 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
36018030 TTAAGTAATA
*
36018040 TAATGTTATTTATATGATATGATGATTATTATCAT
1 TAATGTTATTTATATGATATGAAGATTATTATCAT
*
36018075 TAATGTTATTTATATGATATGAAGATTGTTAT
1 TAATGTTATTTATATGATATGAAGATTATTAT
36018107 TATGAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (35 bp):
TAATGTTATTTATATGATATGAAGATTATTATCAT
Found at i:36021798 original size:27 final size:28
Alignment explanation
Indices: 36021741--36021810 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
36021731 AAATTTGTAC
**
36021741 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
36021769 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
36021796 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36021811 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:36021819 original size:27 final size:27
Alignment explanation
Indices: 36021741--36021822 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
36021731 AAATTTGTAC
* *
36021741 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
36021769 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
36021796 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
36021823 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:36029874 original size:27 final size:28
Alignment explanation
Indices: 36029817--36029886 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
36029807 AAATTTGTAC
**
36029817 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
36029845 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
36029872 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36029887 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:36029895 original size:27 final size:27
Alignment explanation
Indices: 36029817--36029898 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
36029807 AAATTTGTAC
* *
36029817 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
36029845 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
36029872 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
36029899 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:36034343 original size:27 final size:27
Alignment explanation
Indices: 36034303--36034400 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
36034293 CTTTTATTCT
36034303 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
* * *
36034330 ATTA-AAATACTAAAA-A-CAACTTTTATTTT
1 ATTACAAATA-TAAAAGAGTAA--ATTA--TA
36034359 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
36034386 ATTA-AAATATTAAAA
1 ATTACAAATA-TAAAA
36034401 ACAACTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
25 2 0.04
26 11 0.20
27 22 0.39
29 13 0.23
30 6 0.11
31 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (27 bp):
ATTACAAATATAAAAGAGTAAATTATA
Found at i:36034346 original size:56 final size:56
Alignment explanation
Indices: 36034286--36034418 Score: 248
Period size: 56 Copynumber: 2.4 Consensus size: 56
36034276 TTCCTTATTC
*
36034286 AAAACAACTTTTATTCTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
*
36034342 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATTA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
36034398 AAAACAACTTTTATTTTATTA
1 AAAACAACTTTTATTTTATTA
36034419 AATGAAAGAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.38
Consensus pattern (56 bp):
AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
Found at i:36034411 original size:27 final size:26
Alignment explanation
Indices: 36034325--36034411 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 26
36034315 AAAGAGTAAA
36034325 TTATAATTAAAATACTAAAAACAACTT
1 TTATAATTAAAATA-TAAAAACAACTT
* * *
36034352 TTATTTTATTACAAATATAAAAGAGTAA--A
1 TTA--TAATTA-AAATATAAAA-A-CAACTT
36034381 TTATAATTAAAATATTAAAAACAACTT
1 TTATAATTAAAATA-TAAAAACAACTT
36034408 TTAT
1 TTAT
36034412 TTTATTAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
25 2 0.04
26 6 0.13
27 17 0.37
29 13 0.28
30 6 0.13
31 2 0.04
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (26 bp):
TTATAATTAAAATATAAAAACAACTT
Found at i:36035504 original size:7 final size:7
Alignment explanation
Indices: 36035492--36035547 Score: 94
Period size: 7 Copynumber: 8.0 Consensus size: 7
36035482 TATACATAAC
36035492 ACTAAAT
1 ACTAAAT
36035499 ACTAAAT
1 ACTAAAT
36035506 ACTAAAT
1 ACTAAAT
36035513 ACTAAAT
1 ACTAAAT
36035520 ACTAAAT
1 ACTAAAT
*
36035527 ATTAAAT
1 ACTAAAT
36035534 ACTAAAT
1 ACTAAAT
*
36035541 ACGAAAT
1 ACTAAAT
36035548 GATTATTTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.57, C:0.12, G:0.02, T:0.29
Consensus pattern (7 bp):
ACTAAAT
Found at i:36036580 original size:48 final size:49
Alignment explanation
Indices: 36036489--36036587 Score: 155
Period size: 48 Copynumber: 2.0 Consensus size: 49
36036479 ATAAAATTAA
**
36036489 AATTAAAATTGCATAAATGAAAAAAAATATTAAATTGTATTGAAAAATT
1 AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
* *
36036538 AATTAAAATTGCATAAAT-TAAAAAAATATTAAATACTATTGAAATATT
1 AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
36036586 AA
1 AA
36036588 AATTATCACT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 28 0.61
49 18 0.39
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (49 bp):
AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
Found at i:36036764 original size:10 final size:10
Alignment explanation
Indices: 36036747--36036826 Score: 74
Period size: 10 Copynumber: 7.6 Consensus size: 10
36036737 GCTTTGAAAA
36036747 AATTTGAGAG
1 AATTTGAGAG
*
36036757 AATATGAGAG
1 AATTTGAGAG
36036767 AATTTTTG-GAAG
1 AA--TTTGAG-AG
36036779 AATTTGAGAG
1 AATTTGAGAG
*
36036789 AATGTGAGAG
1 AATTTGAGAG
36036799 AATTTTTG-GAAG
1 AA--TTTGAG-AG
36036811 AATTTGAGAG
1 AATTTGAGAG
36036821 AATTTG
1 AATTTG
36036827 GATAGGAGGA
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
10 40 0.69
11 4 0.07
12 14 0.24
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.33
Consensus pattern (10 bp):
AATTTGAGAG
Found at i:36036783 original size:32 final size:32
Alignment explanation
Indices: 36036747--36036823 Score: 145
Period size: 32 Copynumber: 2.4 Consensus size: 32
36036737 GCTTTGAAAA
36036747 AATTTGAGAGAATATGAGAGAATTTTTGGAAG
1 AATTTGAGAGAATATGAGAGAATTTTTGGAAG
*
36036779 AATTTGAGAGAATGTGAGAGAATTTTTGGAAG
1 AATTTGAGAGAATATGAGAGAATTTTTGGAAG
36036811 AATTTGAGAGAAT
1 AATTTGAGAGAAT
36036824 TTGGATAGGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (32 bp):
AATTTGAGAGAATATGAGAGAATTTTTGGAAG
Found at i:36039010 original size:27 final size:27
Alignment explanation
Indices: 36038978--36039043 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
36038968 ATTTTACTCT
36038978 ATGTATATAATAAGGAATTTTAAAACG
1 ATGTATATAATAAGGAATTTTAAAACG
36039005 ATGTATATAATAAGGAATTTTAAAACG
1 ATGTATATAATAAGGAATTTTAAAACG
36039032 ATGTATATAATA
1 ATGTATATAATA
36039044 TTTATAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.48, C:0.03, G:0.14, T:0.35
Consensus pattern (27 bp):
ATGTATATAATAAGGAATTTTAAAACG
Found at i:36040309 original size:2 final size:2
Alignment explanation
Indices: 36040302--36040330 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36040292 GAGACTAGTC
36040302 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36040331 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36046763 original size:65 final size:65
Alignment explanation
Indices: 36046686--36046838 Score: 225
Period size: 65 Copynumber: 2.4 Consensus size: 65
36046676 TGCGGACTAT
* *
36046686 CACAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCGGACATAAA
1 CACAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCAGACACAAA
* * * *
36046751 CACAACTCTTTGTGAGCGTCTTGTTATATGATCGGTTGTGATCCTTCATATGTTGCAGACACAAA
1 CACAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCAGACACAAA
** *
36046816 TGCAGCTCTTTGTGAGCGTCCTG
1 CACAACTCTTTGTGAGCGTCCTG
36046839 ATATGACTCA
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 78 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (65 bp):
CACAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCAGACACAAA
Found at i:36046916 original size:26 final size:26
Alignment explanation
Indices: 36046881--36046967 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
36046871 TATCCGAAGC
*
36046881 TCCTGATTAATGGCTCTTCGTGAGCT
1 TCCTGATTAAAGGCTCTTCGTGAGCT
*
36046907 TCCTGTTTAAAGGCTCTTCGTGAGCT
1 TCCTGATTAAAGGCTCTTCGTGAGCT
* * * *
36046933 TCCTGATTAAAAGTTCTTTGTGAACT
1 TCCTGATTAAAGGCTCTTCGTGAGCT
36046959 TCCTGATTA
1 TCCTGATTA
36046968 TGAATCCTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.40
Consensus pattern (26 bp):
TCCTGATTAAAGGCTCTTCGTGAGCT
Found at i:36052690 original size:40 final size:40
Alignment explanation
Indices: 36052635--36052827 Score: 239
Period size: 40 Copynumber: 4.8 Consensus size: 40
36052625 CGGATGATAT
*
36052635 CCGGACTAAGAT-CCGAAGGCATTCGTGCTGGTTATTATAG
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTGGTTATTATAA
*
36052675 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTGGTTATTATAA
** * *
36052715 CCGGGTTAAGTCCCGAAGGCAGTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAA
* ** *
36052755 CTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAA
*
36052795 CCGGTCTAAGTCCCGAAGGCATTCGTGCTGGTT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTT
36052828 GTTACATCCG
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 131 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAA
Found at i:36052851 original size:40 final size:40
Alignment explanation
Indices: 36052647--36052851 Score: 135
Period size: 40 Copynumber: 5.1 Consensus size: 40
36052637 GGACTAAGAT
* * * * *
36052647 CCGAAGGCATTCGTGCTGGTTATTATAGCCGGACTAAGAT-
1 CCGAAGGCATTCGTGCGGGTTATTACAACCGAACCAAG-TC
** * ****
36052687 CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCGGGTTATTACAACCGAACCAAGTC
* * * ****
36052727 CCGAAGGCAGTCGTGCGGGTTATTATAACTGGGTTAAGTC
1 CCGAAGGCATTCGTGCGGGTTATTACAACCGAACCAAGTC
* ** *
36052767 CCGAAGGCATTCGTGCGGGTTATTATAACCGGTCTAAGTC
1 CCGAAGGCATTCGTGCGGGTTATTACAACCGAACCAAGTC
* * * *
36052807 CCGAAGGCATTCGTGCTGGTTGTTACATCCGAACCAAGTT
1 CCGAAGGCATTCGTGCGGGTTATTACAACCGAACCAAGTC
36052847 CCGAA
1 CCGAA
36052852 AGTAGTCATG
Statistics
Matches: 142, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGGGTTATTACAACCGAACCAAGTC
Found at i:36052851 original size:80 final size:80
Alignment explanation
Indices: 36052647--36052851 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
36052637 GGACTAAGAT
* * *
36052647 CCGAAGGCATTCGTGCTGGTTATTATAGCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATTA
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGACTAAGTTCCGAAGGCAATTGTGCGAGTTATTA
36052712 TAACCGGGTTAAGTC
66 TAACCGGGTTAAGTC
* * * ** * *
36052727 CCGAAGGCAGTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAGGC-ATTCGTGCGGGTTATT
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGACTAAGTTCCGAAGGCAATT-GTGCGAGTTATT
36052791 ATAACC-GGTCTAAGTC
65 ATAACCGGGT-TAAGTC
* * * * *
36052807 CCGAAGGCATTCGTGCTGGTTGTTACATCCGAACCAAGTTCCGAA
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGACTAAGTTCCGAA
36052852 AGTAGTCATG
Statistics
Matches: 102, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
79 6 0.06
80 96 0.94
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCTGGTTATTATAACCGGACTAAGTTCCGAAGGCAATTGTGCGAGTTATTA
TAACCGGGTTAAGTC
Found at i:36060630 original size:40 final size:40
Alignment explanation
Indices: 36060575--36060767 Score: 230
Period size: 40 Copynumber: 4.8 Consensus size: 40
36060565 CGGATGATAT
36060575 CCGGACTAAGAT-CCGAAGGCATTCGTGCTGGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTGGTTATTATAA
*
36060615 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTGGTTATTATAA
** * * *
36060655 CCGGGTTAAGTCCCAAAGGCAGTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAA
** * * *
36060695 CCGGGTTAAGTCCCAAAGGCATTCGTACGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAA
*
36060735 CCGGTCTAAGTCCCGAAGGCATTCGTGCTGGTT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTT
36060768 GTTACATCCG
Statistics
Matches: 136, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 130 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAA
Found at i:36071826 original size:27 final size:28
Alignment explanation
Indices: 36071790--36071890 Score: 152
Period size: 27 Copynumber: 3.7 Consensus size: 28
36071780 GGGAATCCTA
* *
36071790 TTGTGACAGAGTCACCAGATACAGATA-
1 TTGTGGCAGAGCCACCAGATACAGATAT
*
36071817 TTGTGGCAGAGCCACCAGAAACAGATAT
1 TTGTGGCAGAGCCACCAGATACAGATAT
36071845 TTGTGGCAGAGCCACCAGAT-CAGATAT
1 TTGTGGCAGAGCCACCAGATACAGATAT
*
36071872 TTGTGGCAGAGCCATCAGA
1 TTGTGGCAGAGCCACCAGA
36071891 ACGCTTCCTC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
27 49 0.72
28 19 0.28
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (28 bp):
TTGTGGCAGAGCCACCAGATACAGATAT
Found at i:36072323 original size:8 final size:8
Alignment explanation
Indices: 36072296--36072326 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
36072286 ACAAAATTCT
36072296 GGCTTTTC
1 GGCTTTTC
*
36072304 GGCATTTC
1 GGCTTTTC
36072312 GGCTTTTC
1 GGCTTTTC
36072320 GGCTTTT
1 GGCTTTT
36072327 ACCGATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GGCTTTTC
Found at i:36079608 original size:27 final size:26
Alignment explanation
Indices: 36079568--36079635 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
36079558 AGCATGGCTG
* *
36079568 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTATGACAGAGCCA
*
36079594 CCAGATACAGATATTATGGCAGAGCCA
1 CCAGA-ACAGATATTATGACAGAGCCA
* *
36079621 CTAGAAATAGATATT
1 CCAG-AACAGATATT
36079636 TGTGGTAGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.14
27 29 0.83
28 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTATGACAGAGCCA
Found at i:36079658 original size:27 final size:28
Alignment explanation
Indices: 36079614--36079673 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 28
36079604 ATATTATGGC
*
36079614 AGAGCCACTAGAAATAGATATTTGTGGT
1 AGAGCCACTAGAAATAGATATTTGTCGT
*
36079642 AGAGCCACTAG-ATTAGATATTTGTCGT
1 AGAGCCACTAGAAATAGATATTTGTCGT
36079669 AGAGC
1 AGAGC
36079674 AACCAGAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (28 bp):
AGAGCCACTAGAAATAGATATTTGTCGT
Found at i:36082056 original size:21 final size:21
Alignment explanation
Indices: 36082030--36082078 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
36082020 ACCCTTGTAG
36082030 GTGTGCCACTTTCACACG-GAC
1 GTGTGCCACTTTCACACGAG-C
*
36082051 GTGTGCCTCTTTCACACGAGC
1 GTGTGCCACTTTCACACGAGC
36082072 GTGTGCC
1 GTGTGCC
36082079 CCTATGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.27
Consensus pattern (21 bp):
GTGTGCCACTTTCACACGAGC
Found at i:36089621 original size:44 final size:44
Alignment explanation
Indices: 36089557--36089644 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
36089547 GATAGGGTCT
36089557 TACATGAAATCAAATACGATGCCAACATCCCAAACATGGTTTTA
1 TACATGAAATCAAATACGATGCCAACATCCCAAACATGGTTTTA
** *
36089601 TACAT-AAATCATAAGT-CGATGCCAATGTCCCAGACATGGTTTTA
1 TACATGAAATCA-AA-TACGATGCCAACATCCCAAACATGGTTTTA
36089645 CAAGATAACA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 6 0.15
44 32 0.82
45 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (44 bp):
TACATGAAATCAAATACGATGCCAACATCCCAAACATGGTTTTA
Found at i:36091578 original size:936 final size:933
Alignment explanation
Indices: 36089768--36091631 Score: 3126
Period size: 936 Copynumber: 2.0 Consensus size: 933
36089758 ATTCTCAAGA
*
36089768 CATATATTCATTCAACATTGATCAAAATCATATAATCAATAATAATTCAATTCAAAATACATTTA
1 CATATATTCATTCAACATTGATCAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
* * *
36089833 TTTGTATATTGACTTACCTCGTACGGACTCGAATAAACAGAATCGACTATTCAACGACTTTCGAC
66 TTTGTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATCGACTACTCAACGACTTTCGAC
* * * *
36089898 TTTCCTCGGTCTAATTCCGTTTTCTTTGGTTCTTGATCTATATAAATTCAAATTTAACTCTTTTA
131 TTTCCCCGATCTAATTCCATTTTCTTTGGTTCTTAATCTATATAAATTCAAATTTAACTCTTTTA
* *
36089963 TTCACCAAATCATTCAAATCAATCCACAAACACATATTTAGGCCATTTGAAAAATTAGCCCTCAC
196 TTCACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTGAAAAATTAGCCCTCAC
* * *
36090028 ATTTTCACATTTTTACAATTTAGTCCCTAATTCATAAAATCACAAAATACACCAAATTTCTTTAA
261 ATTTTCACATATTGACAATTTAGTCCCAAATTCATAAAATCACAAAATACACCAAATTTCTTTAA
36090093 ACATATGCTTGGCTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACATTT
326 ACATATGCTTGGCTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACATTT
* * *
36090158 TAGTCCCTCAAAAATTCATTTTCACAATTTAGTCCATTTTACTCAAATTTATCAAAAATTCAAAG
391 TAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACACAAATTCATCAAAAATTCAAAG
*
36090223 ACAAAATATACAAACCCAAAACATATCTTTCATTTTCCATCAACTAACTTCACAAAGCTTACAAA
456 ACAAAATATACAAACCCAAAACATATATTTCATTTTCCAT--ACTAACTTCACAAAGCTTACAAA
* *
36090288 ATCAACAATGGCATAACTCAAAATCATCATCAAAATCAGAAATTAGGGCATGGGCTTGATAGATT
519 ATCAACAATGGCATAACTCAAAATCATCATCAAAATAAAAAATTAGGGCATGGGCTTGATAGATT
* * * * *
36090353 ACTTAGCAACGATTACAAAAACGTAGAAATCATCAAAAACCAATCAAATTTCATACCTTAATCAT
584 ACTAAGCAACGAATACAAAAACATAAAAATCATCAAAAACCAATCAAATTTCATACCTTAATCAC
*
36090418 CAAAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCTGTTATGGA
649 CAAAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCGGTTATGGA
* * *
36090483 TGAACATAAATGGTCCATTTTCATGCCTTTGTTTTATTATGAATCATTTAATTCTTCAGTTACAA
714 TGAACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCAGTTACAA
* *
36090548 ATTTGCCTTTATAAATTAACATATAAAATCACATATATTAAGGCCATTAATATCCATTAACCTTG
779 ATTTCCCTTTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATATCCATTAACCTTG
36090613 TTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTTTAAC
844 TTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTTTAAC
36090678 CAATAGCAGGCAACATTTTTTAAAAG
909 CAATAGCAGGCAAC-TTTTTTAAAAG
* *
36090704 CATATATTCATTCAACATTGTTTAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
1 CATATATTCATTCAACATTGATCAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
* *
36090769 TTTGTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATC-AGCTACTCGACGAGTTTCGA
66 TTTGTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATCGA-CTACTCAACGACTTTCGA
* * *
36090833 CTTTCCCCGATCTAATTTCATTTTCTTTGGTTCTTAATCTATATAAATTTATATTTAACTCTTTT
130 CTTTCCCCGATCTAATTCCATTTTCTTTGGTTCTTAATCTATATAAATTCAAATTTAACTCTTTT
* **
36090898 ATTCACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTTACGAATTAGCCCTCA
195 ATTCACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTGAAAAATTAGCCCTCA
* *
36090963 CATTTTCACATATTGACAATTTAGTCTCAAATTCATAAAATCACAGAATACACCAAATTTCTTTA
260 CATTTTCACATATTGACAATTTAGTCCCAAATTCATAAAATCACAAAATACACCAAATTTCTTTA
36091028 AACATATGCTTGGCCT-AATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACAT
325 AACATATGCTTGG-CTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACA-
36091092 TTTTAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACACAAATTCATCAAAAATTCA
388 TTTTAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACACAAATTCATCAAAAATTCA
*
36091157 AAGACAAAATATACTAACCCAAAACATATATTTCATTTTCCAT-C-AACTTCACAAAGCTTACAA
453 AAGACAAAATATACAAACCCAAAACATATATTTCATTTTCCATACTAACTTCACAAAGCTTACAA
*
36091220 AATCAACAATGGCATAACTCAAAATCATCATCAAAATAAAAAAATTAGGGCATGTGCTTGATAGA
518 AATCAACAATGGCATAACTCAAAATCATCATCAAAAT-AAAAAATTAGGGCATGGGCTTGATAGA
* *
36091285 TTACTAAGCAACGAATACAAAAAACATAAAAATTATCAAAAACTAATCAAATTTCATACCTTAAT
582 TTACTAAGCAACGAATAC-AAAAACATAAAAATCATCAAAAACCAATCAAATTTCATACCTTAAT
* * * *
36091350 CACCAAAATAAGTAGCCGAACCTTAGTTTGTATTTTTTTTTCTTTTCCTTTGTATTTTCGGTTAT
646 CACCAAAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCGGTTAT
*
36091415 GGATGAACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCATTTA
711 GGATGAACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCAGTTA
* *
36091480 CAAATTTACCCTTTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATGTCTATTGAA
776 CAAATTT-CCCTTTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATATCCATT-AA
36091545 -CTTGTTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACT
839 CCTTGTTAATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACT
36091609 TTAACCAATAGCAGGCAACTTTT
904 TTAACCAATAGCAGGCAACTTTT
36091632 ATATTTACGC
Statistics
Matches: 868, Mismatches: 53, Indels: 15
0.93 0.06 0.02
Matches are distributed among these distances:
933 56 0.06
934 41 0.05
935 174 0.20
936 490 0.56
937 107 0.12
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (933 bp):
CATATATTCATTCAACATTGATCAAAAGCATATAATCAATAATAATTCAATTCAAAATACATTTA
TTTGTATATCGACTTACCTCCTACGGACTCGAATAAACAGAATCGACTACTCAACGACTTTCGAC
TTTCCCCGATCTAATTCCATTTTCTTTGGTTCTTAATCTATATAAATTCAAATTTAACTCTTTTA
TTCACCAAATCATTCAAATCAATCCAAAAACAAATATTTAGGCCATTTGAAAAATTAGCCCTCAC
ATTTTCACATATTGACAATTTAGTCCCAAATTCATAAAATCACAAAATACACCAAATTTCTTTAA
ACATATGCTTGGCTGAATATTCCTATAGCTCATACAAGCCCACATATTTCATTTATTTCACATTT
TAGTCCCTCAAAAACTCATTTTCACAATTTAGTCCATTTTACACAAATTCATCAAAAATTCAAAG
ACAAAATATACAAACCCAAAACATATATTTCATTTTCCATACTAACTTCACAAAGCTTACAAAAT
CAACAATGGCATAACTCAAAATCATCATCAAAATAAAAAATTAGGGCATGGGCTTGATAGATTAC
TAAGCAACGAATACAAAAACATAAAAATCATCAAAAACCAATCAAATTTCATACCTTAATCACCA
AAATAAGTAGCCGAACCCTAGCTTGTATTTTCTTTTCTTTTCCTTTGTATTTCCGGTTATGGATG
AACACAAATGATCCATTTTCATGCCTTTGTTTTATTATAAATCATTTAATTCTTCAGTTACAAAT
TTCCCTTTATAAAGTAACATATAAAATCACATATATTAAGGCCATTAATATCCATTAACCTTGTT
AATGGTCCAATTGCAACATAAGGACCTTTCATTTACAAAGACATATCAAATAAGCACTTTAACCA
ATAGCAGGCAACTTTTTTAAAAG
Found at i:36107564 original size:12 final size:12
Alignment explanation
Indices: 36107549--36107579 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
36107539 TAGCACACGC
*
36107549 CCGTGTGTGTGA
1 CCGTGTGTGCGA
36107561 CCGTGTGTGCGA
1 CCGTGTGTGCGA
36107573 CCGTGTG
1 CCGTGTG
36107580 GTCTGCCCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.42, T:0.29
Consensus pattern (12 bp):
CCGTGTGTGCGA
Found at i:36108574 original size:43 final size:43
Alignment explanation
Indices: 36108526--36108680 Score: 174
Period size: 43 Copynumber: 3.6 Consensus size: 43
36108516 AGCTTGTACA
* * *
36108526 ATGCCAATGTTCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* * *
36108569 ATGCCATTGTCCCAGATAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACGTAATCAAATATCG
* *
36108611 ATGCCAACGTCCCAGACGTGGTCTTATACGTATATCATAA-ATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTA-ATCA-AATATCG
*
36108655 ATGCCAATGTCCC-GATGTGGTCTTAC
1 ATGCCAATGTCCCAGACGTGGTCTTAC
36108681 GCGATAACAC
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 49 0.53
44 17 0.18
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:36115654 original size:24 final size:24
Alignment explanation
Indices: 36115622--36115669 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36115612 TCTTAGGCTG
36115622 TACGAAATTTTAGAGAGAATCAGA
1 TACGAAATTTTAGAGAGAATCAGA
36115646 TACGAAATTTTAGAGAGAATCAGA
1 TACGAAATTTTAGAGAGAATCAGA
36115670 CCTATAGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.25
Consensus pattern (24 bp):
TACGAAATTTTAGAGAGAATCAGA
Found at i:36118618 original size:43 final size:43
Alignment explanation
Indices: 36118487--36118658 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 43
36118477 AAATTGTACA
* * * * * *
36118487 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATGTCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATCG
** * *
36118530 ATGCCATTGTCCCAGACAGGGTCTTACAC-AAATCACA-ATTACG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATA-T-CG
* * *
36118573 ATGCCAATGTCCCAAACATGGTCTTACTCGAAAACACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATCG
* * * *
36118616 ATGCCAACGTCCTAGACGTGGCCTTACACGAGAACACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATCG
36118659 GAAATCCTAT
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 8 0.08
43 88 0.84
44 8 0.08
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATCG
Found at i:36119804 original size:14 final size:15
Alignment explanation
Indices: 36119787--36119815 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36119777 GCACGAAAAT
36119787 TTCACACAT-ATAAA
1 TTCACACATAATAAA
36119801 TTCACACATAATAAA
1 TTCACACATAATAAA
36119816 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:36120091 original size:18 final size:19
Alignment explanation
Indices: 36120068--36120106 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
36120058 TTTGTAATTA
*
36120068 ATTTGAA-TAATTGTTTCT
1 ATTTGAAGTAAATGTTTCT
36120086 ATTTGAAGTTAAATGTTTCT
1 ATTTGAAG-TAAATGTTTCT
36120106 A
1 A
36120107 AATGTGATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (19 bp):
ATTTGAAGTAAATGTTTCT
Found at i:36122954 original size:28 final size:29
Alignment explanation
Indices: 36122914--36123012 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
36122904 GTAATAAGCC
*
36122914 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
36122942 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
36122970 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
36122999 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36123013 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:36133543 original size:27 final size:27
Alignment explanation
Indices: 36133502--36133606 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
36133492 AGGAAGCGTC
36133502 CTGGTGGCTGC-GCCACAATTATCTGAT
1 CTGGTGGCT-CTGCCACAATTATCTGAT
* *
36133529 CTGGTGGCTCTGCCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
36133556 CTGGTGGCTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
36133584 CTGGTGACTCTGTCAC-ATTATCT
1 CTGGTGGCTCTGCCACAATTATCT
36133607 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.04
27 48 0.71
28 17 0.25
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:36133606 original size:54 final size:54
Alignment explanation
Indices: 36133502--36133613 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
36133492 AGGAAGCGTC
* * *
36133502 CTGGTGGCTGCGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCTGTT
1 CTGGTGGCTGCGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
*
36133556 CTGGTGGCT-CTGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTGC-GCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
36133610 CTGG
1 CTGG
36133614 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 1 0.02
54 34 0.65
55 17 0.33
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTGCGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:36140390 original size:29 final size:29
Alignment explanation
Indices: 36140351--36140424 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
36140341 GGTTGAGAGA
* *
36140351 ATGGCACTAAGTGTGCGGGCT-TGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TGT-AAAGTAC
36140380 ATGGCACTAAGTGTGCGAGTGTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTGTAAAGTAC
36140409 ATGGCACTAAGTGTGC
1 ATGGCACTAAGTGTGC
36140425 ATGGTTGATT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 4 0.10
29 37 0.90
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.24
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTGTAAAGTAC
Found at i:36143970 original size:93 final size:93
Alignment explanation
Indices: 36143864--36144035 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
36143854 GCCCATAAGT
* * * *
36143864 GAACTCGGACTCAACTCAATGAGCTAGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36143929 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* * *
36143957 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAGCTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36144022 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
36144036 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:36144026 original size:46 final size:46
Alignment explanation
Indices: 36143856--36144031 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
36143846 TGTAACCCGC
* * * * * *
36143856 CCATAAGTGAACTCGGACTCAACTCAATGAGCTAGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36143902 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGC-A--T
* ***
36143948 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36143995 CCATAAGTGAACTCGGACTCAGCTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36144032 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36150603 original size:30 final size:30
Alignment explanation
Indices: 36150559--36150647 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
36150549 CAAAGATAAC
36150559 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
36150588 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * * *
36150618 AAGAGATCTAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
36150648 CGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.18
30 38 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:36150607 original size:15 final size:15
Alignment explanation
Indices: 36150559--36150638 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
36150549 CAAAGATAAC
*
36150559 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
36150573 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
36150588 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
36150603 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
36150618 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
36150633 AAGAAA
1 AAGAAA
36150639 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:36150647 original size:15 final size:15
Alignment explanation
Indices: 36150570--36150647 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
36150560 AGAAAACCGA
36150570 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
36150585 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
36150599 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* * *
36150614 AATAAAGAGATCTAGG
1 -ATAAAGAAATCCAAG
*
36150630 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
36150645 ATA
1 ATA
36150648 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 4 0.08
15 43 0.86
16 3 0.06
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36152251 original size:46 final size:46
Alignment explanation
Indices: 36152182--36152357 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
36152172 ATGTAACCCG
*
36152182 TCCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACA
*
36152228 TCCATAAGTGAACTCGGAATCAACTCAACGAGCTCGGATGCCTAGTT-ACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCACA
* * * * *
36152278 TCTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCA
1 TC-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACA
*
36152321 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
36152358 ATGCCCAAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 62 0.57
47 25 0.23
48 1 0.01
49 1 0.01
50 7 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACA
Found at i:36152317 original size:93 final size:93
Alignment explanation
Indices: 36152191--36152362 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
36152181 GTCCATAAGT
* * *
36152191 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCACATCCATAAGTGAACTCGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGAATCAACTCAA
36152256 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
36152284 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGAATCAACTCAA
*
36152349 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
36152363 CAAATATCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGAATCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:36154807 original size:30 final size:30
Alignment explanation
Indices: 36154741--36154820 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
36154731 TAAGAAAATC
*
36154741 GAATAAAGAAATCCAAGATAGAGAAACCTA
1 GAATAAAGAAATCCAAGATAAAGAAACCTA
*
36154771 GAATAAAGAAATCC-AGAATAAAGAGATCC-A
1 GAATAAAGAAATCCAAG-ATAAAGA-AACCTA
* * *
36154801 GGATAAAGAAACCCATGATA
1 GAATAAAGAAATCCAAGATA
36154821 CGATACTATG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
29 2 0.05
30 36 0.86
31 4 0.10
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCTA
Found at i:36154820 original size:15 final size:14
Alignment explanation
Indices: 36154743--36154811 Score: 68
Period size: 15 Copynumber: 4.6 Consensus size: 14
36154733 AGAAAATCGA
36154743 ATAAAGAAATCCAAG
1 ATAAAGAAATCC-AG
*
36154758 ATAGAGAAA-CCTAG
1 ATAAAGAAATCC-AG
36154772 AATAAAGAAATCCAG
1 -ATAAAGAAATCCAG
*
36154787 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCA-G
36154803 ATAAAGAAA
1 ATAAAGAAA
36154812 CCCATGATAC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
14 4 0.09
15 39 0.85
16 3 0.07
ACGTcount: A:0.58, C:0.12, G:0.17, T:0.13
Consensus pattern (14 bp):
ATAAAGAAATCCAG
Found at i:36157891 original size:93 final size:93
Alignment explanation
Indices: 36157765--36157936 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
36157755 GCCCATAAGT
*
36157765 GAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCGATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36157830 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
36157858 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
36157922 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
36157937 CAAATATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:36157932 original size:46 final size:45
Alignment explanation
Indices: 36157757--36157931 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
36157747 TGTAACCCGC
*
36157757 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
36157803 CGATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
36157849 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
36157896 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
36157932 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 64 0.59
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:36157951 original size:46 final size:44
Alignment explanation
Indices: 36157808--36157951 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
36157798 CGCATCGATA
* *
36157808 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
36157857 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
36157900 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
36157947 AGTGA
1 AGTGA
36157952 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 28 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:36163097 original size:42 final size:43
Alignment explanation
Indices: 36162998--36163146 Score: 151
Period size: 42 Copynumber: 3.5 Consensus size: 43
36162988 GAGATATTGG
* * *
36162998 GTAAGACCGTGTTTGGGACACAGGCCTCGATTTGAGATTTACGT
1 GTAAGACCATGTCTGGGACACAGGCATCGATTT-AGATTTACGT
*
36163042 GTAAGACCATGTCTGGGACATAGGCATCGTATTT-GATTT-CGT
1 GTAAGACCATGTCTGGGACACAGGCATCG-ATTTAGATTTACGT
* * * * * *
36163084 GTAAGGCCCTGTCTGGGACAGAGGCATCGATGCT-GAATTACTT
1 GTAAGACCATGTCTGGGACACAGGCATCGAT-TTAGATTTACGT
*
36163127 GTAAGACCATGTCCGGGACA
1 GTAAGACCATGTCTGGGACA
36163147 TCGACATTGT
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.02
42 34 0.38
43 24 0.27
44 25 0.28
45 4 0.04
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACACAGGCATCGATTTAGATTTACGT
Found at i:36170915 original size:2 final size:2
Alignment explanation
Indices: 36170908--36170937 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
36170898 ACATTATTAG
36170908 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36170938 GAGTCTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36175263 original size:29 final size:28
Alignment explanation
Indices: 36175202--36175264 Score: 92
Period size: 27 Copynumber: 2.2 Consensus size: 28
36175192 GTGTCTCAGC
36175202 CGTGTGTGCTACACGGCCTAGAACACAG
1 CGTGTGTGCTACACGGCCTAGAACACAG
* *
36175230 -TTGTGTGCTACACGGCCTAGAACACGGG
1 CGTGTGTGCTACACGGCCTAGAACAC-AG
36175258 CGTGTGT
1 CGTGTGT
36175265 CTTGACTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 24 0.80
28 1 0.03
29 5 0.17
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.22
Consensus pattern (28 bp):
CGTGTGTGCTACACGGCCTAGAACACAG
Found at i:36180316 original size:21 final size:21
Alignment explanation
Indices: 36180292--36180334 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
36180282 GAGAAATGTT
36180292 AAATCATGTTTGAATGAAGGA
1 AAATCATGTTTGAATGAAGGA
36180313 AAATCATGTTTGAATGAAGGA
1 AAATCATGTTTGAATGAAGGA
36180334 A
1 A
36180335 GAATTGATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (21 bp):
AAATCATGTTTGAATGAAGGA
Found at i:36190228 original size:46 final size:46
Alignment explanation
Indices: 36190172--36190297 Score: 200
Period size: 46 Copynumber: 2.7 Consensus size: 46
36190162 TGGTTGAGCA
* *
36190172 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
36190218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
36190264 -CCCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
36190298 GGGGCGGGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 4 0.05
46 71 0.95
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:36199547 original size:40 final size:40
Alignment explanation
Indices: 36199411--36199656 Score: 252
Period size: 40 Copynumber: 6.2 Consensus size: 40
36199401 ACGGACTTTA
* * *
36199411 CCCGGATATCACGATTTGCACAAATGCCTTC-GGTC-TAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
36199449 CCCGGATTTAACAACTTGCACGAATGCCTTC-GGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
36199488 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
36199528 CCCGGATTTAACAACTTGCACGAATGCCTTTGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
36199568 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
36199608 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
36199648 CCCGGATAT
1 CCCGGATAT
36199657 CATTCAATTT
Statistics
Matches: 171, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
37 3 0.02
38 33 0.19
39 30 0.18
40 105 0.61
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:36199557 original size:79 final size:80
Alignment explanation
Indices: 36199411--36199614 Score: 317
Period size: 80 Copynumber: 2.6 Consensus size: 80
36199401 ACGGACTTTA
36199411 CCCGGATATCACGATTTGCACAAATGCCTTC-GGTC-TAGCCCGGATTTAACAACTTGCACGAAT
1 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
36199474 GCC-TTCGGTCTTAG
66 GCCTTTCGGTCTTAG
36199488 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
*
36199553 GCCTTTGGGTCTTAG
66 GCCTTTCGGTCTTAG
* * * * *
36199568 CCCGGATAT-AGCTACTAGCACAATTGCCTTCGGGTCTTAACCCGGAT
1 CCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
36199615 ATAAATTTCA
Statistics
Matches: 117, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
77 31 0.26
78 4 0.03
79 32 0.27
80 50 0.43
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (80 bp):
CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
GCCTTTCGGTCTTAG
Found at i:36214160 original size:80 final size:80
Alignment explanation
Indices: 36213971--36214275 Score: 433
Period size: 80 Copynumber: 3.9 Consensus size: 80
36213961 TATTCGGATG
* * *
36213971 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGC
*
36214033 ATTTGTGCGAGTTACT
65 ACTTGTGCGAGTTACT
*
36214049 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
36214113 CTTGTGTGAGTTACT
66 CTTGTGCGAGTTACT
36214128 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
36214193 TTTGTGCGAGTTACT
66 CTTGTGCGAGTTACT
* * * * * *
36214208 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
36214271 ACTTG
65 ACTTG
36214276 GTTTGGGAAT
Statistics
Matches: 206, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
77 8 0.04
78 38 0.18
79 49 0.24
80 111 0.54
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
CTTGTGCGAGTTACT
Found at i:36214250 original size:40 final size:40
Alignment explanation
Indices: 36213971--36214236 Score: 441
Period size: 40 Copynumber: 6.7 Consensus size: 40
36213961 TATTCGGATG
* *
36213971 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36214010 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36214049 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36214088 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36214128 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36214168 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36214208 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
36214237 AGCAAGTAGC
Statistics
Matches: 214, Mismatches: 8, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
38 8 0.04
39 67 0.31
40 139 0.65
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36222762 original size:48 final size:48
Alignment explanation
Indices: 36222706--36223085 Score: 313
Period size: 48 Copynumber: 7.9 Consensus size: 48
36222696 GGTGAATTGT
* *
36222706 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCAT-ATGTCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTC-TCATATCAAGGC
* * * * * *
36222754 TGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCGTCTCAATGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAGGC
* * *
36222802 TGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCATAAT-ATGGC
1 CGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCAT-ATCAAGGC
* * * * *
36222850 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAGGC
* ** *
36222898 CGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCAT-TACATTGT
1 CGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATAT-CAAGGC
* ** * * *
36222946 CAATGCCATGTTCCAAACATATTCTCT-CATTGGCTCTCATATCATGGT
1 CGATGCCATGTTCCAAACATGGTCT-TACACTGGCTCTCATATCAAGGC
* * * * ** *
36222994 CGATGCCGTGTCCCAGACATGGTCTTACACTAGCTAACATATCAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAGGC
* * * * * *
36223042 TGATGCCATGTCCCAGACATGGTCTTACAATGGCACACATATCA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCA
36223086 CCCAAATGTC
Statistics
Matches: 267, Mismatches: 54, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
47 10 0.04
48 249 0.93
49 8 0.03
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAGGC
Found at i:36222980 original size:144 final size:143
Alignment explanation
Indices: 36222706--36223075 Score: 428
Period size: 144 Copynumber: 2.6 Consensus size: 143
36222696 GGTGAATTGT
* * * * * * * *
36222706 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATGTCGAGGCTGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATG-TCCAGA
* * * * *
36222771 CATGGTCTTACACTAGCTCTCGTCTCAATGATGATGCCATGTCCTAGACATGGTCTTACACTGGC
65 CATGGTCTTACACTGGCTCTCATCTCAATGATAATGCCATGTCCTAAACATAGTCTTACACTGGC
36222836 TCTCATAAT-ATGGC
130 TCTCAT-ATCATGGC
*
36222850 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCTAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATGTCC-AGA
* * *
36222915 CATGGTCTTACACTGGCTCTCAT-TACATTG-TCAATGCCATGTTCC-AAACATATTCTCT-CAT
65 CATGGTCTTACACTGGCTCTCATCT-CAATGAT-AATGCCATG-TCCTAAACATAGTCT-TACAC
*
36222976 TGGCTCTCATATCATGGT
126 TGGCTCTCATATCATGGC
* *
36222994 CGATGCCGTGTCCCAGACATGGTCTTACACTAGCTA-ACATATCAATGCTGATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGC-ACACATATCAATGCTGATGCCATGT-CCAG
*
36223058 ACATGGTCTTACAATGGC
64 ACATGGTCTTACACTGGC
36223076 ACACATATCA
Statistics
Matches: 196, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
143 7 0.04
144 182 0.93
145 7 0.04
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (143 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATGTCCAGAC
ATGGTCTTACACTGGCTCTCATCTCAATGATAATGCCATGTCCTAAACATAGTCTTACACTGGCT
CTCATATCATGGC
Found at i:36223083 original size:96 final size:97
Alignment explanation
Indices: 36222704--36223085 Score: 366
Period size: 96 Copynumber: 4.0 Consensus size: 97
36222694 AGGGTGAATT
* * * * * * *
36222704 GTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATGTCGAGGCTGATGCCATGTTCCA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATGCTGATGCCATGTCCCA
* * * *
36222769 AACATGGTCTTACACTAGCTCTCGTCTCAATG
66 AACATGGTCTTACACTAGCACACATATCAATG
* * * *
36222801 AT-GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA--ATATGGCCGATGCCATGTCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA-AT-GCTGATGCCATGTCC
36222863 CAAACATGGTCTTACACTAGCACACATATCAAT-
64 CAAACATGGTCTTACACTAGCACACATATCAATG
* * * * * *
36222896 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAT-TACATTG-TCAATGCCATGTTC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-CAATGCT-GATGCCATGTCC
** * * * *
36222959 CAAACATATTCTCT-CATTGGCTCTCATATC-ATG
64 CAAACATGGTCT-TACACTAGCACACATATCAATG
* * *
36222992 GTCGATGCCGTGTCCCAGACATGGTCTTACACTAGCTAACATATCAATGCTGATGCCATGTCCCA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATGCTGATGCCATGTCCCA
* * *
36223057 GACATGGTCTTACAATGGCACACATATCA
66 AACATGGTCTTACACTAGCACACATATCA
36223086 CCCAAATGTC
Statistics
Matches: 230, Mismatches: 42, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
95 4 0.02
96 220 0.96
97 5 0.02
98 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (97 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATGCTGATGCCATGTCCCA
AACATGGTCTTACACTAGCACACATATCAATG
Found at i:36239632 original size:18 final size:19
Alignment explanation
Indices: 36239597--36239633 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36239587 TGAATAGGCC
36239597 AAATGGGCCAGAATGGGCT
1 AAATGGGCCAGAATGGGCT
*
36239616 AAATGGGCCCG-ATGGGCT
1 AAATGGGCCAGAATGGGCT
36239634 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.27, C:0.19, G:0.38, T:0.16
Consensus pattern (19 bp):
AAATGGGCCAGAATGGGCT
Found at i:36239785 original size:29 final size:29
Alignment explanation
Indices: 36239706--36239853 Score: 140
Period size: 29 Copynumber: 5.2 Consensus size: 29
36239696 GCATGAAGAT
* *
36239706 AATGTGATTTGGGCCGGATGGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATA
* * * *
36239735 AATGAG-AGTGGGCCTCATGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATA
** *
36239763 AATGTGAATTGGGCCTTTTGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATA
* * *
36239792 AACGTGAATTGGGCATGATAGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATA
*
36239821 AATGAG-ATTGGGCCT-AGTGGGCCATATA
1 AATGTGAATTGGGCCTGA-TGGGCCATATA
*
36239849 CATGT
1 AATGT
36239854 ATGTAGGGGT
Statistics
Matches: 95, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
27 1 0.01
28 43 0.45
29 51 0.54
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
AATGTGAATTGGGCCTGATGGGCCATATA
Found at i:36247438 original size:10 final size:10
Alignment explanation
Indices: 36247423--36247450 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36247413 GAATAGGCCA
36247423 AATGGGCTGG
1 AATGGGCTGG
36247433 AATGGGCTGG
1 AATGGGCTGG
36247443 AATGGGCT
1 AATGGGCT
36247451 AAACGGGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.11, G:0.46, T:0.21
Consensus pattern (10 bp):
AATGGGCTGG
Found at i:36247568 original size:28 final size:29
Alignment explanation
Indices: 36247537--36247640 Score: 113
Period size: 29 Copynumber: 3.7 Consensus size: 29
36247527 GTTAGCATGA
* * *
36247537 ATAT-AATGTGATTTGGGTCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
36247565 ATATAAATGAG-ATTGGGCCTCATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
36247593 ATATGAATTTGAATTAGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
36247622 ATATGAACGTGAATTGGGC
1 ATATGAATGTGAATTGGGC
36247641 AAGATAGGCC
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
28 25 0.41
29 36 0.59
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:36247650 original size:29 final size:29
Alignment explanation
Indices: 36247589--36247652 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
36247579 GGGCCTCATG
** ** *
36247589 GGCCATATGAATTTGAATTAGGCCTGATG
1 GGCCATATGAACGTGAATTAGGCAAGATA
*
36247618 GGCCATATGAACGTGAATTGGGCAAGATA
1 GGCCATATGAACGTGAATTAGGCAAGATA
36247647 GGCCAT
1 GGCCAT
36247653 TTAAATGAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
GGCCATATGAACGTGAATTAGGCAAGATA
Found at i:36249664 original size:44 final size:43
Alignment explanation
Indices: 36249601--36249696 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 43
36249591 ATGTGTTTTC
* *
36249601 GTGTAAGACCACGTATGGGATGTTGGCATCG-ACTTATGATTTAA
1 GTGTAAGACCACATATGGGACGTTGGCATCGTA-TT-TGATTTAA
* *
36249645 GTGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCA
1 GTGTAAGACCACATATGGGACGTTGGCATCGTATTTGATTTAA
36249688 -TGTAAGACC
1 GTGTAAGACC
36249697 CTGTCTGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 9 0.19
43 7 0.15
44 30 0.64
45 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACATATGGGACGTTGGCATCGTATTTGATTTAA
Found at i:36249756 original size:42 final size:42
Alignment explanation
Indices: 36249602--36249757 Score: 142
Period size: 42 Copynumber: 3.7 Consensus size: 42
36249592 TGTGTTTTCG
* * *
36249602 TGTAAGACCACGTATGGGATGTTGGCATCGACT-TATGATTTA-A
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TAT-TTA-TTACA
* *
36249645 GTGTAAGACCACATCTGGGACGTTGGCATCG-TATTTGATTTCA
1 -TGTAAGACCACGTCTGGGACGTTGGCATCGATATTT-ATTACA
**
36249688 TGTAAGACC-CTGTCTGAAACAG-TGGCATCGATATTTATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTATTACA
*
36249730 TGTAAGACCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
36249758 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.02
42 53 0.58
43 10 0.11
44 27 0.29
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTATTACA
Found at i:36254598 original size:232 final size:232
Alignment explanation
Indices: 36254192--36254663 Score: 908
Period size: 232 Copynumber: 2.0 Consensus size: 232
36254182 TTTGAACCAT
* *
36254192 GTGTAACATGCATGTATTTTGTTGATTAATGGAGGAATATGAATGTTTGATGCATGATAAACATC
1 GTGTAACATGCATGTATTTTGTTGATTAATAGAGGAATATGAATGCTTGATGCATGATAAACATC
36254257 TTTTACTAGGTGATTTTTAGTGAAAACACCTAAAAAGGGCACTTGTTTGTAAAAGTGTAAAAGTG
66 TTTTACTAGGTGATTTTTAGTGAAAACACCTAAAAAGGGCACTTGTTTGTAAAAGTGTAAAAGTG
36254322 TGTAGTAATAATGTGAAATAAAGGAAAATATGGGCTGATATGAGCATAGTAAAGGTTCGGTTAGG
131 TGTAGTAATAATGTGAAATAAAGGAAAATATGGGCTGATATGAGCATAGTAAAGGTTCGGTTAGG
36254387 CTTGAGTAACCAAAAAAATGCATGCATTTCATTTTAC
196 CTTGAGTAACCAAAAAAATGCATGCATTTCATTTTAC
36254424 GTGTAACATGCATGTATTTTGTTGATTAATAGAGGAATATGAATGCTTGATGCATGATAAACATC
1 GTGTAACATGCATGTATTTTGTTGATTAATAGAGGAATATGAATGCTTGATGCATGATAAACATC
*
36254489 TTTTACTAGGTGATTTTTAGTGAAAACACCTAAAAAGGGCATTTGTTTGTAAAAGTGTAAAAGTG
66 TTTTACTAGGTGATTTTTAGTGAAAACACCTAAAAAGGGCACTTGTTTGTAAAAGTGTAAAAGTG
36254554 TGTAGTAATAATGTGAAATAAAGGAAAATATGGGCTGATATGAGCATAGTAAAGGTTCGGTTAGG
131 TGTAGTAATAATGTGAAATAAAGGAAAATATGGGCTGATATGAGCATAGTAAAGGTTCGGTTAGG
*
36254619 CTTGAGTAACCAAGAAAATGCATGCATTTCATTTTAC
196 CTTGAGTAACCAAAAAAATGCATGCATTTCATTTTAC
36254656 GTGTAACA
1 GTGTAACA
36254664 CCCCTAATCC
Statistics
Matches: 236, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
232 236 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (232 bp):
GTGTAACATGCATGTATTTTGTTGATTAATAGAGGAATATGAATGCTTGATGCATGATAAACATC
TTTTACTAGGTGATTTTTAGTGAAAACACCTAAAAAGGGCACTTGTTTGTAAAAGTGTAAAAGTG
TGTAGTAATAATGTGAAATAAAGGAAAATATGGGCTGATATGAGCATAGTAAAGGTTCGGTTAGG
CTTGAGTAACCAAAAAAATGCATGCATTTCATTTTAC
Found at i:36255685 original size:43 final size:42
Alignment explanation
Indices: 36255624--36255771 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 42
36255614 AATGCCAGCA
* **
36255624 TCCCAAACGTGGTCTTACATGTAATCAAATATCGATATCACTG
1 TCCCAGACGTGGTCTTACAT-TAATCAAATATCGATGCCACTG
* * *
36255667 TCCCAGACATGGTCTTACACTAAATCAAATA-AGATGCCAAC-G
1 TCCCAGACGTGGTCTTACA-TTAATCAAATATCGATGCC-ACTG
* *
36255709 TCCCAGACGTGGTCTTACATCTAAATCATAA-GTCGATGCCAATG
1 TCCCAGACGTGGTCTTACAT-T-AATCA-AATATCGATGCCACTG
36255753 TCCCAGACGTGGTCTTACA
1 TCCCAGACGTGGTCTTACA
36255772 CGATAACACA
Statistics
Matches: 87, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 23 0.26
43 34 0.39
44 29 0.33
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATTAATCAAATATCGATGCCACTG
Found at i:36255758 original size:44 final size:42
Alignment explanation
Indices: 36255624--36255771 Score: 165
Period size: 44 Copynumber: 3.5 Consensus size: 42
36255614 AATGCCAGCA
* * ** *
36255624 TCCCAAACGTGGTCTTACATGT-AATCAAATATCGATATCACTG
1 TCCCAGACGTGGTCTTACATCTAAATC-AA-ATCGATGCCAATG
* * *
36255667 TCCCAGACATGGTCTTACA-CTAAATCAAATAAGATGCCAACG
1 TCCCAGACGTGGTCTTACATCTAAATCAAAT-CGATGCCAATG
36255709 TCCCAGACGTGGTCTTACATCTAAATCATAAGTCGATGCCAATG
1 TCCCAGACGTGGTCTTACATCTAAATCA-AA-TCGATGCCAATG
36255753 TCCCAGACGTGGTCTTACA
1 TCCCAGACGTGGTCTTACA
36255772 CGATAACACA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 27 0.30
43 29 0.33
44 30 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATCTAAATCAAATCGATGCCAATG
Found at i:36255766 original size:86 final size:85
Alignment explanation
Indices: 36255615--36255772 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
36255605 AGCTCGTACA
* * * *
36255615 ATGCCAGCATCCCAAACGTGGTCTTACATGTAATCAAATATCGATATCACTGTCCCAGACATGGT
1 ATGCCAACATCCCAAACGTGGTCTTACATCTAATCAAATATCGATACCAATGTCCCAGACATGGT
36255680 CTTACACTAAATCAAATAAG
66 CTTACACTAAATCAAATAAG
* * * * *
36255700 ATGCCAACGTCCCAGACGTGGTCTTACATCTAAATCATAA-GTCGATGCCAATGTCCCAGACGTG
1 ATGCCAACATCCCAAACGTGGTCTTACATCT-AATCA-AATATCGATACCAATGTCCCAGACATG
36255764 GTCTTACAC
64 GTCTTACAC
36255773 GATAACACAT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 27 0.44
86 33 0.53
87 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (85 bp):
ATGCCAACATCCCAAACGTGGTCTTACATCTAATCAAATATCGATACCAATGTCCCAGACATGGT
CTTACACTAAATCAAATAAG
Found at i:36258232 original size:14 final size:13
Alignment explanation
Indices: 36258201--36258239 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
36258191 TATATCGGGA
36258201 AATTAA-AACAAG
1 AATTAAGAACAAG
*
36258213 AATTAAGAACACAT
1 AATTAAGAACA-AG
36258227 AATTAAGAACAAG
1 AATTAAGAACAAG
36258240 TCAAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.18
Consensus pattern (13 bp):
AATTAAGAACAAG
Found at i:36260651 original size:68 final size:68
Alignment explanation
Indices: 36260502--36260659 Score: 167
Period size: 68 Copynumber: 2.3 Consensus size: 68
36260492 CTTTCCAATT
** * * *
36260502 TATCTCGTAGCTCTCTTGTCTACATGGTCTCCTTCACTTGGAATCACACATGTGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGGATACATCAC-TCGAATCACACATGTGACCTAGCTACA
**
36260567 TTTA
65 CATA
* *
36260571 TCTCTCCCGTAGCTCTCTTGTCTACATGGGATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 TATCT--CGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGTGACCTAGCTAC
36260634 TACATA
64 -ACATA
*
36260640 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
36260660 ACACATGATG
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
68 36 0.49
69 7 0.09
70 5 0.07
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGTGACCTAGCTACAC
ATA
Found at i:36267685 original size:68 final size:68
Alignment explanation
Indices: 36267529--36267686 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
36267519 CTACCAAATT
* *
36267529 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTCGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
36267594 TTTA
65 CATA
* * * *
36267598 TCTCTCCCGTAACTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
36267660 CTACATA
63 C-ACATA
*
36267667 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
36267687 ACACATGATG
Statistics
Matches: 73, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
68 35 0.48
69 7 0.10
70 6 0.08
71 25 0.34
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:36269955 original size:7 final size:6
Alignment explanation
Indices: 36269920--36269960 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
36269910 TTATTAGAGG
* *
36269920 AAAATA AAGATA AAAATG AAAATA AAAATA ATAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA A-AAATA AAAA
36269961 GTCTTTAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:36278750 original size:48 final size:46
Alignment explanation
Indices: 36278589--36278839 Score: 154
Period size: 46 Copynumber: 5.4 Consensus size: 46
36278579 GCCAAATCCT
* * *
36278589 AGACATTGTCTTACACTGGCTCTCATC-TATCAGTGTCGATGCCATGTCCC
1 AGACA-TGTCTTACACTAGCTCTCATCGCA--AG-GCCGATG-CATGTCCC
* * * * * *
36278639 AGACAGGTCTTACACT-GACACTCA--ACAA-GCTGACGCCATGTCCT
1 AGACATGTCTTACACTAG-CTCTCATCGCAAGGCCGATG-CATGTCCC
* * * * *
36278683 AGACAGGTCTTACATTAGCTTGTCCATCGCGAGGCTGATGCATGTCCC
1 AGACATGTCTTACACTAGC-TCT-CATCGCAAGGCCGATGCATGTCCC
* * *
36278731 AGACATGTCATT-CACTAGCTCTCGTCTCAATGCCGATGCATGTCCC
1 AGACATGTC-TTACACTAGCTCTCATCGCAAGGCCGATGCATGTCCC
* *****
36278777 AGACATGTCTTACACTGGCTCTCATATTGTGGCCGATGCATGTCCC
1 AGACATGTCTTACACTAGCTCTCATCGCAAGGCCGATGCATGTCCC
*
36278823 AGATATGTCTTACACTA
1 AGACATGTCTTACACTA
36278840 ACACACGTAT
Statistics
Matches: 160, Mismatches: 31, Indels: 24
0.74 0.14 0.11
Matches are distributed among these distances:
44 28 0.17
45 4 0.03
46 73 0.46
47 2 0.01
48 25 0.16
49 23 0.14
50 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
AGACATGTCTTACACTAGCTCTCATCGCAAGGCCGATGCATGTCCC
Found at i:36278777 original size:46 final size:46
Alignment explanation
Indices: 36278719--36278839 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 46
36278709 TCGCGAGGCT
* *
36278719 GATGCATGTCCCAGACATGTCATT-CACTAGCTCTCGTCTCAAT-GCC
1 GATGCATGTCCCAGACATGTC-TTACACTAGCTCTCATAT-AATGGCC
* **
36278765 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATTGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGGCC
*
36278811 GATGCATGTCCCAGATATGTCTTACACTA
1 GATGCATGTCCCAGACATGTCTTACACTA
36278840 ACACACGTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 3 0.05
46 63 0.95
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGGCC
Found at i:36287738 original size:40 final size:40
Alignment explanation
Indices: 36287681--36287910 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
36287671 GATGATAACG
* *
36287681 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TTC
*
36287721 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TTC
36287761 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
* * *
36287801 GGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
* ** *
36287841 GGGTTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
*
36287881 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36287911 AGTTATATCC
Statistics
Matches: 174, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 173 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
Found at i:36287918 original size:40 final size:40
Alignment explanation
Indices: 36287681--36287936 Score: 322
Period size: 40 Copynumber: 6.4 Consensus size: 40
36287671 GATGATAACG
* * *
36287681 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* *
36287721 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
36287761 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
36287801 GGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
36287841 GGGTTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
36287881 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGTTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
36287921 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
36287937 TACTTGGTTT
Statistics
Matches: 197, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 16 0.08
40 180 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:36291556 original size:40 final size:40
Alignment explanation
Indices: 36291501--36291704 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
36291491 TGAATGATAC
* * * *
36291501 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
36291541 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
36291581 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
36291621 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
36291661 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
36291701 CCGG
1 CCGG
36291705 CTAAATTCCG
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 145 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:36291634 original size:80 final size:80
Alignment explanation
Indices: 36291497--36291708 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
36291487 CAATTGAATG
* * * *
36291497 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
36291561 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
36291577 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
36291642 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
36291657 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
36291709 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 6 0.05
80 112 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Done.