Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 126 of 770
Found at i:36741436 original size:81 final size:81
Alignment explanation
Indices: 36741240--36741436 Score: 313
Period size: 81 Copynumber: 2.4 Consensus size: 81
36741230 GAAATAAGAT
* * *
36741240 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTAT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTATAGAATTACCAT
36741305 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * *
36741321 AGAATTACCGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGATTTATAGAATTACCGT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTATAGAATTACCAT
36741386 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * *
36741402 AGAATTACTATTTTATCCTTGATTTACAAAATTAT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTAT
36741437 TGAAACACCC
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTATAGAATTACCAT
TTTACCCTCGATTTAC
Found at i:36741462 original size:81 final size:81
Alignment explanation
Indices: 36741240--36741462 Score: 216
Period size: 81 Copynumber: 2.8 Consensus size: 81
36741230 GAAATAAGAT
* * *** * * * **
36741240 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTAT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTATCATAACACCCTAGATTTACAAAATTACCGT
36741305 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * *** * * *
36741321 AGAATTACCGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGATTTATAGAATTACCGT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTATCATAACACCCTAGATTTACAAAATTACCGT
36741386 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* * * *
36741402 AGAATTACTATTTTATCCTTGATTTACAAAATTATTGA-AACACCCTTAG-TTTACAAAATTA
1 AGAATTACCATTTTACCCTCGATTTACAAAATTA-TCATAACACCC-TAGATTTACAAAATTA
36741463 GCAAAATACC
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
81 118 0.97
82 4 0.03
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.40
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCGATTTACAAAATTATCATAACACCCTAGATTTACAAAATTACCGT
TTTACCCTCGATTTAC
Found at i:36741486 original size:27 final size:26
Alignment explanation
Indices: 36741456--36741637 Score: 172
Period size: 27 Copynumber: 6.8 Consensus size: 26
36741446 CTTAGTTTAC
**
36741456 AAAATTAGCAAAATA-CCCTCGATCAGT
1 AAAATTA-CAAAATACCCCT-GATTTGT
*
36741483 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTA-CAAAATACCCCTGATTTGT
*
36741510 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTAC-AAAATACCCCTGATTTGT
*
36741537 AAAATTACTAAAATACCCCTGACTTGT
1 AAAATTAC-AAAATACCCCTGATTTGT
*
36741564 AAAATTACCAAAATACCCTTGATTTGT
1 AAAATTA-CAAAATACCCCTGATTTGT
* *
36741591 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTA-CAAAATACCCCT-GATTTGT
* *
36741618 ATAA-TATCGAAATACCCCTG
1 AAAATTA-CAAAATACCCCTG
36741638 TAGGGTAGAA
Statistics
Matches: 134, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
26 13 0.10
27 116 0.87
28 5 0.04
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (26 bp):
AAAATTACAAAATACCCCTGATTTGT
Found at i:36741514 original size:81 final size:81
Alignment explanation
Indices: 36741429--36741603 Score: 194
Period size: 81 Copynumber: 2.2 Consensus size: 81
36741419 CTTGATTTAC
* *
36741429 AAAATTATTGAAACACCCTTAGTTTACAAAATTAGC-AAAATA-CCCTCGA-TCAGTAAAATTAC
1 AAAATTATTAAAACACCCCTAGTTTACAAAATTA-CTAAAATACCCCT-GACT-AGTAAAATTAC
*
36741491 CAAAATACCCCTGGTTTGT
63 CAAAATACCCCTGATTTGT
* * * ** *
36741510 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAA
1 AAAATTATTAAAACACCCCTAGTTTACAAAATTACTAAAATACCCCTGACTAGTAAAATTACCAA
*
36741575 AATACCCTTGATTTGT
66 AATACCCCTGATTTGT
* *
36741591 GAAATTATCAAAA
1 AAAATTATTAAAA
36741604 TACTCTCGAT
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
80 1 0.01
81 72 0.92
82 5 0.06
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTATTAAAACACCCCTAGTTTACAAAATTACTAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:36741666 original size:27 final size:27
Alignment explanation
Indices: 36741625--36741902 Score: 459
Period size: 27 Copynumber: 10.3 Consensus size: 27
36741615 TGTATAATAT
36741625 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
36741652 TGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36741679 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36741706 CGAAACACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36741733 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36741760 CGCAATA-CCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
36741786 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
36741813 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
36741840 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36741867 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
36741894 CGAGATACC
1 CGAAATACC
36741903 TTGTGAGGTA
Statistics
Matches: 231, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
26 24 0.10
27 207 0.90
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:36741828 original size:134 final size:135
Alignment explanation
Indices: 36741622--36741902 Score: 465
Period size: 134 Copynumber: 2.1 Consensus size: 135
36741612 ATTTGTATAA
* *
36741622 TATCGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTACCGAAATAC
1 TATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
* *
36741687 CCCTGTAGGGTAGAATTATCGAAACACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
66 CCCTGTAGGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
36741752 AGAAT
131 AGAAT
*
36741757 TATCGCAATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
1 TATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
* * *
36741821 CCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGT
66 CCCTGTAGGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
36741886 AGAAT
131 AGAAT
* *
36741891 TACCGAGATACC
1 TATCGAAATACC
36741903 TTGTGAGGTA
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
134 124 0.93
135 10 0.07
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (135 bp):
TATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
CCCTGTAGGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGT
AGAAT
Found at i:36742357 original size:31 final size:31
Alignment explanation
Indices: 36742322--36742400 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
36742312 TTACATTCAC
* * *
36742322 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
* *
36742353 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
36742384 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
36742401 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTA
Found at i:36742364 original size:6 final size:6
Alignment explanation
Indices: 36742322--36742409 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
36742312 TTACATTCAC
* * *
36742322 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
36742371 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
36742410 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:36744230 original size:20 final size:20
Alignment explanation
Indices: 36744207--36744245 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36744197 TGTATTCAAA
* *
36744207 AAATTTTAGAATTTTTCATC
1 AAATTTTACAACTTTTCATC
36744227 AAATTTTACAACTTTTCAT
1 AAATTTTACAACTTTTCAT
36744246 TTTAGTCACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATC
Found at i:36746173 original size:23 final size:25
Alignment explanation
Indices: 36746137--36746184 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
36746127 ATTAATTAAT
*
36746137 TAAAACATAAAAGAAATAAAAGAAA
1 TAAAACATAAAAGAAACAAAAGAAA
36746162 TAAAA-AT-AAAGAAACAAAAGAAA
1 TAAAACATAAAAGAAACAAAAGAAA
36746185 AAGAACAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 15 0.68
24 2 0.09
25 5 0.23
ACGTcount: A:0.77, C:0.04, G:0.08, T:0.10
Consensus pattern (25 bp):
TAAAACATAAAAGAAACAAAAGAAA
Found at i:36751422 original size:16 final size:16
Alignment explanation
Indices: 36751402--36751443 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
36751392 TGGAAGTCTT
*
36751402 CAAAAATAAATAAGAGA
1 CAAAAATAAAT-AGAAA
*
36751419 -AAAATTAAATAGAAA
1 CAAAAATAAATAGAAA
36751434 CAAAAATAAA
1 CAAAAATAAA
36751444 AATAGAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (16 bp):
CAAAAATAAATAGAAA
Found at i:36755146 original size:47 final size:47
Alignment explanation
Indices: 36755077--36755369 Score: 451
Period size: 47 Copynumber: 6.2 Consensus size: 47
36755067 CCCTTTGGGA
* * * *
36755077 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
36755124 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
36755171 CTTATCATATATATACACTTCCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36755218 CTTATCACATATATATATTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36755265 CTTATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36755312 CTTATCACATATATATATTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36755359 CTTATCACATA
1 CTTATCACATA
36755370 GACATATCTT
Statistics
Matches: 226, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 226 1.00
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:36761970 original size:41 final size:42
Alignment explanation
Indices: 36761874--36762043 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 42
36761864 ATATCGTACA
* *
36761874 ATGCCAAAGTCCTAGAC-GTGGTCTTACATGCAATCACATATCG
1 ATGCCAAAGTCCCAGACAG-GGTCTTACACG-AATCACATATCG
** *
36761917 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCAAATA-CG
1 ATGCCAAAGTCCCAGACAGGGTCTTACACGAATCACATATCG
* *
36761958 ATGCCAAAGTCCCAGACATGGTCTTACACATAATCACATATCG
1 ATGCCAAAGTCCCAGACAGGGTCTTACAC-GAATCACATATCG
* * * *
36762001 ATGCCAATGTCCCAGA-TGTGGTCTTACTCGAGAACACATATCG
1 ATGCCAAAGTCCCAGACAG-GGTCTTACACGA-ATCACATATCG
36762044 GAAATCCTAT
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 28 0.26
42 17 0.16
43 60 0.57
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAAAGTCCCAGACAGGGTCTTACACGAATCACATATCG
Found at i:36770165 original size:84 final size:84
Alignment explanation
Indices: 36770015--36770168 Score: 229
Period size: 84 Copynumber: 1.8 Consensus size: 84
36770005 ATATCGTACA
* * * * *
36770015 ATGCCAACGTCCTAGACATGGTCTTACATGCAATTACATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAAAGTCCCAGACATGGTCTTACATGCAATGACATATCGATGCCACTGTCCCAAACAGGGT
36770080 CTTACACGAATCAAATACG
66 CTTACACGAATCAAATACG
* *
36770099 ATGCCAAAGTCCCAGACATGGTCTTACATGTAATGACATATCGATGCCAAC-GTCCCAAACATGG
1 ATGCCAAAGTCCCAGACATGGTCTTACATGCAATGACATATCGATGCC-ACTGTCCCAAACAGGG
36770163 TCTTAC
65 TCTTAC
36770169 TCGAGAACAC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
84 60 0.97
85 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (84 bp):
ATGCCAAAGTCCCAGACATGGTCTTACATGCAATGACATATCGATGCCACTGTCCCAAACAGGGT
CTTACACGAATCAAATACG
Found at i:36770183 original size:43 final size:43
Alignment explanation
Indices: 36770015--36770168 Score: 188
Period size: 43 Copynumber: 3.6 Consensus size: 43
36770005 ATATCGTACA
* *
36770015 ATGCCAACGTCCTAGACATGGTCTTACATGCAATTACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACATATCG
* * * *
36770058 ATGCC-ACTGTCCCAGATAGGGTCTTACACG-AATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGCAATCACATATCG
* * *
36770099 ATGCCAAAGTCCCAGACATGGTCTTACATGTAATGACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACATATCG
*
36770142 ATGCCAACGTCCCAAACATGGTCTTAC
1 ATGCCAACGTCCCAGACATGGTCTTAC
36770169 TCGAGAACAC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 26 0.28
42 17 0.18
43 50 0.54
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACATATCG
Found at i:36775604 original size:16 final size:16
Alignment explanation
Indices: 36775585--36775620 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
36775575 CAAATCCCAG
*
36775585 AAAGCTGAAATGCTGA
1 AAAGCTGAAATGCTAA
36775601 AAAGCTGAAATGCTAA
1 AAAGCTGAAATGCTAA
36775617 AAAG
1 AAAG
36775621 TCAAAAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.22, T:0.17
Consensus pattern (16 bp):
AAAGCTGAAATGCTAA
Found at i:36775919 original size:27 final size:29
Alignment explanation
Indices: 36775849--36775924 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
36775839 TGTAAAAGTG
*
36775849 ATTGGGCCTCATGGGCCATATAGATATGA
1 ATTGGGCCTAATGGGCCATATAGATATGA
*
36775878 TTTGGGCCTAATGGGCCATAT-GA-ATGA
1 ATTGGGCCTAATGGGCCATATAGATATGA
*
36775905 GATTGGG-CTAGTGGGCCATA
1 -ATTGGGCCTAATGGGCCATA
36775925 AGCATGTATG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 16 0.38
28 7 0.17
29 19 0.45
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.28
Consensus pattern (29 bp):
ATTGGGCCTAATGGGCCATATAGATATGA
Found at i:36777851 original size:37 final size:37
Alignment explanation
Indices: 36777793--36777900 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
36777783 GCTCAGACGT
* *
36777793 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
36777830 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
36777867 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36777901 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:36778115 original size:47 final size:47
Alignment explanation
Indices: 36778063--36778389 Score: 465
Period size: 47 Copynumber: 7.0 Consensus size: 47
36778053 TTTCACACTA
* * * * * *
36778063 GCCATTCGGCTTTACCGCATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
36778110 GCCATTTGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
36778157 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
36778204 GCCATTCGGCCTCATCACATATATACATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
36778251 GCCATTTGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
36778298 GCCATTCGGCCTGATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
36778345 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
36778390 AAAATCCTAA
Statistics
Matches: 248, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 248 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:36778262 original size:141 final size:141
Alignment explanation
Indices: 36778080--36778390 Score: 514
Period size: 141 Copynumber: 2.2 Consensus size: 141
36778070 GGCTTTACCG
* * * *
36778080 CATATATGCATTTTCATATTCACCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACA
1 CATATATGCATGTTCACATTCATCACATAGGCCATTTGGCCTTATCACACATATGCATGCTCACA
* * * *
36778145 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTGGCCATT
66 TTCACCACATTGGCCATTCGGCCTGATCACACATATGCATGCTCACATTCATCACATTGGCCATT
36778210 CGGCCTCATCA
131 CGGCCTCATCA
* * * *
36778221 CATATATACATGTTCACATTCATCACATAGGCCATTTGGCCTTATCACATATATGCATGTTCATA
1 CATATATGCATGTTCACATTCATCACATAGGCCATTTGGCCTTATCACACATATGCATGCTCACA
36778286 TTCACCACATTGGCCATTCGGCCTGATCACACATATGCATGCTCACATTCATCACATTGGCCATT
66 TTCACCACATTGGCCATTCGGCCTGATCACACATATGCATGCTCACATTCATCACATTGGCCATT
36778351 CGGCCTCATCA
131 CGGCCTCATCA
36778362 CATATATGCATGTTCACATTCATCACATA
1 CATATATGCATGTTCACATTCATCACATA
36778391 AAATCCTAAA
Statistics
Matches: 157, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
141 157 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (141 bp):
CATATATGCATGTTCACATTCATCACATAGGCCATTTGGCCTTATCACACATATGCATGCTCACA
TTCACCACATTGGCCATTCGGCCTGATCACACATATGCATGCTCACATTCATCACATTGGCCATT
CGGCCTCATCA
Found at i:36781529 original size:26 final size:26
Alignment explanation
Indices: 36781491--36781548 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
36781481 CCGCAACTCT
*
36781491 TTGTGAGCGTCCTGTTATATGATCGG
1 TTGTGAGCATCCTGTTATATGATCGG
36781517 TTGTGAGCATCCTGTTATATGATCGG
1 TTGTGAGCATCCTGTTATATGATCGG
36781543 TTGTGA
1 TTGTGA
36781549 TCCTGCATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.17, C:0.14, G:0.29, T:0.40
Consensus pattern (26 bp):
TTGTGAGCATCCTGTTATATGATCGG
Found at i:36781672 original size:26 final size:26
Alignment explanation
Indices: 36781643--36781717 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 26
36781633 GGAGCTCCCA
**
36781643 ATTAAAGGCTCTTTGTGCGCTTCCTG
1 ATTAAAGGCTCTTTGTGAACTTCCTG
* *
36781669 ATTAAAAGTTCTTTGTGAACTTCCTG
1 ATTAAAGGCTCTTTGTGAACTTCCTG
* *
36781695 ATT-ATGGCTC-TTATGAACTTCCT
1 ATTAAAGGCTCTTTGTGAACTTCCT
36781718 ATCATATAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 12 0.29
25 4 0.10
26 25 0.61
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.41
Consensus pattern (26 bp):
ATTAAAGGCTCTTTGTGAACTTCCTG
Found at i:36785255 original size:13 final size:13
Alignment explanation
Indices: 36785237--36785263 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36785227 AAAAGTTGTT
36785237 TATCTATCAATAA
1 TATCTATCAATAA
36785250 TATCTATCAATAA
1 TATCTATCAATAA
36785263 T
1 T
36785264 CTTTCATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (13 bp):
TATCTATCAATAA
Found at i:36785323 original size:36 final size:36
Alignment explanation
Indices: 36785276--36785350 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
36785266 TTCATTTTCT
36785276 ACCATAAATTTATAATTTCCAGCATATACATCCATG
1 ACCATAAATTTATAATTTCCAGCATATACATCCATG
36785312 ACCATAAATTTATAATTTCCAGCATATACATCCATG
1 ACCATAAATTTATAATTTCCAGCATATACATCCATG
36785348 ACC
1 ACC
36785351 CATTTTTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (36 bp):
ACCATAAATTTATAATTTCCAGCATATACATCCATG
Found at i:36786912 original size:10 final size:11
Alignment explanation
Indices: 36786897--36786925 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
36786887 CAAGATCTAG
36786897 TTTATTTTA-T
1 TTTATTTTATT
36786907 TTTATTTTATT
1 TTTATTTTATT
36786918 TTTATTTT
1 TTTATTTT
36786926 GGAATTATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:36791183 original size:39 final size:39
Alignment explanation
Indices: 36791123--36791202 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
36791113 ATCATTCCTA
36791123 TCATAATGCAGACCATACAATAATATTAAAATAAAATTT
1 TCATAATGCAGACCATACAATAATATTAAAATAAAATTT
* * *
36791162 TCATAATGCAGACTATGCAATAATATTCAAATAAAATTT
1 TCATAATGCAGACCATACAATAATATTAAAATAAAATTT
36791201 TC
1 TC
36791203 TTTTTGGCTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.47, C:0.14, G:0.06, T:0.33
Consensus pattern (39 bp):
TCATAATGCAGACCATACAATAATATTAAAATAAAATTT
Found at i:36796699 original size:12 final size:12
Alignment explanation
Indices: 36796682--36796711 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36796672 CAGTATTAAC
*
36796682 TTTTTATATTAT
1 TTTTTATATAAT
36796694 TTTTTATATAAT
1 TTTTTATATAAT
36796706 TTTTTA
1 TTTTTA
36796712 AAAAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTTATATAAT
Found at i:36797549 original size:34 final size:28
Alignment explanation
Indices: 36797456--36797534 Score: 124
Period size: 28 Copynumber: 2.9 Consensus size: 28
36797446 TATACAGTAT
* * *
36797456 CAGT-ACAGTCTGGTCCTTAGCCCTATA
1 CAGTAACAGTGTGGGCCTAAGCCCTATA
36797483 CAGTAACAGTGTGGGCCTAAGCCCTATA
1 CAGTAACAGTGTGGGCCTAAGCCCTATA
36797511 CAGTAACAGTGTGGGCCTAAGCCC
1 CAGTAACAGTGTGGGCCTAAGCCC
36797535 AATTCGATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 4 0.08
28 44 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTAAGCCCTATA
Found at i:36805505 original size:40 final size:42
Alignment explanation
Indices: 36805461--36805572 Score: 156
Period size: 40 Copynumber: 2.7 Consensus size: 42
36805451 ATATCACGAT
36805461 TTGCACAAATGCCTTCGGGTCTTAGCCCGGAT-T-TAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATATGTAACAAC
* * *
36805501 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATGTAGCTAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATATGTAACAAC
* * *
36805543 TAGCACAATTGCCTTCGGGTCTTAACCCGG
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGG
36805573 TTATAATTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
40 31 0.49
41 1 0.02
42 31 0.49
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (42 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATATGTAACAAC
Found at i:36805572 original size:42 final size:39
Alignment explanation
Indices: 36805463--36805572 Score: 139
Period size: 42 Copynumber: 2.7 Consensus size: 39
36805453 ATCACGATTT
*
36805463 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
* *
36805503 GCACGAATGCCTTCGGGTCTTAGCCCGGATATGTAGCTACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-T-TAACAACTA
*
36805545 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
36805573 TTATAATTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
40 29 0.47
41 3 0.05
42 30 0.48
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
Found at i:36807628 original size:30 final size:30
Alignment explanation
Indices: 36807594--36807653 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36807584 ATTTAATACG
36807594 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36807624 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36807654 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36814634 original size:46 final size:46
Alignment explanation
Indices: 36814566--36814736 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
36814556 AACCCGCCCC
* *
36814566 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
36814611 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * * *
36814659 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
*
36814704 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
36814737 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 12 0.11
46 48 0.45
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:36814677 original size:93 final size:92
Alignment explanation
Indices: 36814571--36814740 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
36814561 GCCCCTAAGT
* * *
36814571 GAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
36814636 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
36814663 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
36814728 CGAGTTCGGATGC
65 CGAGTTCGGATGC
36814741 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 6 0.08
93 66 0.92
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36815192 original size:29 final size:29
Alignment explanation
Indices: 36815160--36815217 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
36815150 ATTTAATACG
36815160 AACTTTGGAAAAATTACACTTTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
* * *
36815189 AACTTTTGCATAATTACACTTTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
36815218 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCTA
Found at i:36819671 original size:2 final size:2
Alignment explanation
Indices: 36819664--36819702 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
36819654 TGAAAGTTGA
36819664 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36819703 TTTGAAAGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:36821897 original size:46 final size:46
Alignment explanation
Indices: 36821845--36821969 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
36821835 GGTTGAGCAT
* * *
36821845 CCGAACTCGTTTAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
36821891 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
36821937 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36821970 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:36823455 original size:43 final size:43
Alignment explanation
Indices: 36823393--36823527 Score: 234
Period size: 43 Copynumber: 3.1 Consensus size: 43
36823383 GTTAAATCCC
*
36823393 GCAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
36823436 GCAGGCTTCGTGCCAGTGATGTGTATTCTGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
36823479 GCAGGCTTCGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
36823522 GCAGGC
1 GCAGGC
36823528 GTAATGTCGG
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.30
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:36831274 original size:14 final size:14
Alignment explanation
Indices: 36831255--36831305 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
36831245 GCTTATGATA
36831255 TGTGAATTAGCATG
1 TGTGAATTAGCATG
*
36831269 TGTGAAAGTTTATG-ATA
1 TGTG-AA--TTA-GCATG
36831286 TGTGAATTAGCATG
1 TGTGAATTAGCATG
36831300 TGTGAA
1 TGTGAA
36831306 AGTTTCGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
13 1 0.03
14 15 0.50
15 2 0.07
16 2 0.07
17 9 0.30
18 1 0.03
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.37
Consensus pattern (14 bp):
TGTGAATTAGCATG
Found at i:36831282 original size:31 final size:31
Alignment explanation
Indices: 36831247--36831310 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
36831237 TTTTCCATGC
36831247 TTATGATATGTGAATTAGCATGTGTGAAAGT
1 TTATGATATGTGAATTAGCATGTGTGAAAGT
36831278 TTATGATATGTGAATTAGCATGTGTGAAAGT
1 TTATGATATGTGAATTAGCATGTGTGAAAGT
36831309 TT
1 TT
36831311 CGTATAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.03, G:0.25, T:0.41
Consensus pattern (31 bp):
TTATGATATGTGAATTAGCATGTGTGAAAGT
Found at i:36835621 original size:30 final size:30
Alignment explanation
Indices: 36835587--36835687 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 30
36835577 AGATAATAAT
36835587 AACATGGCATGCAGTAAATAGTAATAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
* *
36835617 AACAT-GCATTCAGGTCAACCTTATCAGATAATAAT--
1 AACATGGCATGCA-GT-AA----AT-AG-TAATAGTCA
*
36835652 AACATGGCATGCAGTAAATAGTAACAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
36835682 AACATG
1 AACATG
36835688 CACTCAGGTC
Statistics
Matches: 55, Mismatches: 5, Indels: 22
0.67 0.06 0.27
Matches are distributed among these distances:
28 5 0.09
29 8 0.15
30 15 0.27
31 2 0.04
34 2 0.04
35 9 0.16
36 8 0.15
37 6 0.11
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.24
Consensus pattern (30 bp):
AACATGGCATGCAGTAAATAGTAATAGTCA
Found at i:36835649 original size:65 final size:65
Alignment explanation
Indices: 36835574--36835704 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
36835564 AGTCCCATAC
* *
36835574 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
36835639 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
36835704 A
1 A
36835705 ACCTTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
Found at i:36839915 original size:65 final size:65
Alignment explanation
Indices: 36839811--36839941 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
36839801 AGTCTCATGC
*
36839811 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTTAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
* *
36839876 ATCAGATAATAATAACATTGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTTAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
36839941 A
1 A
36839942 ACCCTAGGGG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.27
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:36839999 original size:26 final size:26
Alignment explanation
Indices: 36839944--36839999 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
36839934 TAACCTTAAC
* * * *
36839944 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGAAATTTTCCA
*
36839970 CCTAGGGGTAAATCTGAAATTTTCCA
1 CCTAGGGGTAAATCAGAAATTTTCCA
36839996 CCTA
1 CCTA
36840000 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGAAATTTTCCA
Found at i:36841294 original size:23 final size:21
Alignment explanation
Indices: 36841246--36841295 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
36841236 GTTTCGTCTA
*
36841246 GAAGAAAAAGGAAAAAGGAAG
1 GAAGAAAAAGGAAAAAAGAAG
* *
36841267 AAAGAAAATGGAGAAAAAGAGAG
1 GAAGAAAAAGGA-AAAAAGA-AG
36841290 GAAGAA
1 GAAGAA
36841296 GAAATCGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 10 0.43
22 6 0.26
23 7 0.30
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.02
Consensus pattern (21 bp):
GAAGAAAAAGGAAAAAAGAAG
Found at i:36847116 original size:40 final size:40
Alignment explanation
Indices: 36847031--36847181 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
36847021 AATTGAATGA
* * * *
36847031 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
36847071 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
36847112 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
36847151 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
36847182 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:36847195 original size:40 final size:40
Alignment explanation
Indices: 36847068--36847197 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
36847058 ATGCTGGAAA
* * *
36847068 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
36847108 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
36847148 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
36847188 TTATATCCGG
1 TTATATCCGG
36847198 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:36847196 original size:80 final size:80
Alignment explanation
Indices: 36847030--36847197 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
36847020 AAATTGAATG
* *
36847030 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
36847095 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
36847110 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
36847173 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
36847190 ATATCCGG
1 ATATCCGG
36847198 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:36861174 original size:41 final size:41
Alignment explanation
Indices: 36861117--36861233 Score: 146
Period size: 41 Copynumber: 3.1 Consensus size: 41
36861107 ATTAAACAGA
36861117 CAAATTACCAAATACATACACATCATCAAACCTTACTTAAC
1 CAAATTACCAAATACATACACATCATCAAACCTTACTTAAC
*
36861158 CAAATTACCAAATACATACACAT-A-C--A---TA---AGC
1 CAAATTACCAAATACATACACATCATCAAACCTTACTTAAC
*
36861189 CAAATTACCAAATATATACACATCATCAAACCTTACTTAAC
1 CAAATTACCAAATACATACACATCATCAAACCTTACTTAAC
36861230 CAAA
1 CAAA
36861234 GATTAAAACA
Statistics
Matches: 63, Mismatches: 3, Indels: 20
0.73 0.03 0.23
Matches are distributed among these distances:
31 24 0.38
32 1 0.02
33 1 0.02
34 2 0.03
35 1 0.02
37 1 0.02
38 2 0.03
39 1 0.02
40 1 0.02
41 29 0.46
ACGTcount: A:0.49, C:0.27, G:0.01, T:0.23
Consensus pattern (41 bp):
CAAATTACCAAATACATACACATCATCAAACCTTACTTAAC
Found at i:36862920 original size:27 final size:27
Alignment explanation
Indices: 36862879--36862932 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36862869 TGTCATGTGA
* *
36862879 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
36862906 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
36862933 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:36873572 original size:30 final size:30
Alignment explanation
Indices: 36873517--36873647 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
36873507 ATAGTGAATC
*
36873517 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
36873546 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
36873576 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
36873604 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
36873634 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36873648 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:36873627 original size:58 final size:58
Alignment explanation
Indices: 36873516--36873647 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
36873506 TATAGTGAAT
* * * * *
36873516 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
36873575 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
36873633 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36873648 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:36881530 original size:30 final size:30
Alignment explanation
Indices: 36881475--36881605 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
36881465 ATAGTGAATC
*
36881475 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
36881504 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
36881534 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
36881562 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
36881592 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36881606 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:36881585 original size:58 final size:58
Alignment explanation
Indices: 36881474--36881605 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
36881464 TATAGTGAAT
* * * * *
36881474 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
36881533 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
36881591 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36881606 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:36897343 original size:40 final size:40
Alignment explanation
Indices: 36897260--36897350 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 40
36897250 GTGCTAAGTG
* * ** *
36897260 ACTAAATCCGGACTAAGATCCGACGGCATACGTGTGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
* * *
36897300 ACTAAATCCGGACTAAGATCTGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
36897340 ACTAAATCCGG
1 ACTAAATCCGG
36897351 GTTGAGTCCC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
Found at i:36897405 original size:80 final size:80
Alignment explanation
Indices: 36897225--36897412 Score: 188
Period size: 80 Copynumber: 2.3 Consensus size: 80
36897215 TTCGAATGAT
* *
36897225 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
*
36897290 CGTGTGAGTTACTAA
66 CGTGCGAGTTACTAA
* * ** *
36897305 ATCCGGACTAAGAT-CTGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
36897366 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
36897386 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
36897413 ATGTTTAGCC
Statistics
Matches: 88, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
79 2 0.02
80 76 0.86
81 10 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:36902895 original size:17 final size:17
Alignment explanation
Indices: 36902840--36902895 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
36902830 TAATGGCCGA
36902840 TGTGATGAATGTGAAAG
1 TGTGATGAATGTGAAAG
****
36902857 TGTGTAT-ATATGTGGCCT
1 TGTG-ATGA-ATGTGAAAG
36902875 TGTGATGAATGTGAAAG
1 TGTGATGAATGTGAAAG
36902892 TGTG
1 TGTG
36902896 TATATATGTG
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.27, C:0.04, G:0.34, T:0.36
Consensus pattern (17 bp):
TGTGATGAATGTGAAAG
Found at i:36902906 original size:18 final size:18
Alignment explanation
Indices: 36902848--36902906 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
36902838 GATGTGATGA
36902848 ATGTGAAAGTGTGTATAT
1 ATGTGAAAGTGTGTATAT
****
36902866 ATGTGGCCTTGTG-ATGA-
1 ATGTGAAAGTGTGTAT-AT
36902883 ATGTGAAAGTGTGTATAT
1 ATGTGAAAGTGTGTATAT
36902901 ATGTGA
1 ATGTGA
36902907 TAAGGCCTAA
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
17 12 0.40
18 18 0.60
ACGTcount: A:0.29, C:0.03, G:0.31, T:0.37
Consensus pattern (18 bp):
ATGTGAAAGTGTGTATAT
Found at i:36903015 original size:47 final size:47
Alignment explanation
Indices: 36902875--36903050 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
36902865 TATGTGGCCT
* *
36902875 TGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAA
* *
36902924 TGTGATGAATTTGAAGGTGTATAT-TGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
* *
36902970 TGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
* * * *
36903017 CGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAG
36903051 TCCCGAAGGG
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 42 0.37
47 57 0.50
49 14 0.12
ACGTcount: A:0.31, C:0.07, G:0.32, T:0.30
Consensus pattern (47 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
Found at i:36903037 original size:93 final size:95
Alignment explanation
Indices: 36902875--36903050 Score: 241
Period size: 93 Copynumber: 1.9 Consensus size: 95
36902865 TATGTGGCCT
* * * *
36902875 TGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAG
1 TGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATTGGAAG
*
36902940 GTGTAT-ATTGTGATAAGGCCGAATGGCCAA
65 GTGTATAAATGTGATAAGGCCGAATGGCCAA
* * *
36902970 TGTGATGAATGTGAAA-GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-
1 TGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAAT-TGGAAG
36903033 GTGTATAAATGTGATAAG
65 GTGTATAAATGTGATAAG
36903051 TCCCGAAGGG
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
93 41 0.58
94 14 0.20
95 16 0.23
ACGTcount: A:0.31, C:0.07, G:0.32, T:0.30
Consensus pattern (95 bp):
TGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATTGGAAGG
TGTATAAATGTGATAAGGCCGAATGGCCAA
Found at i:36910769 original size:26 final size:26
Alignment explanation
Indices: 36910739--36910790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36910729 AATAGTAGTT
36910739 AAATGTTA-AATATATATGTTGTTATG
1 AAATGTTAGAATATATAT-TTGTTATG
*
36910765 AAATGTTAGAATTTATATTTGTTATG
1 AAATGTTAGAATATATATTTGTTATG
36910791 GCCGAATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (26 bp):
AAATGTTAGAATATATATTTGTTATG
Found at i:36917051 original size:93 final size:93
Alignment explanation
Indices: 36916944--36917115 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
36916934 GCCCATAAGT
* *
36916944 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36917009 CGAGCTCGGATGCCCAGTTACATCTCTC
66 CGAGCTCGGATGCCCAGTTACATCTCTC
*
36917037 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
36917102 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
36917116 TAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCCAGTTACATCTCTC
Found at i:36917111 original size:46 final size:46
Alignment explanation
Indices: 36916936--36917111 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
36916926 GGTAACCCGC
* *
36916936 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
36916982 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCA--T
* *** *
36917028 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
36917075 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
36917112 TGCCTAAACA
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
44 4 0.04
46 70 0.63
47 32 0.29
49 5 0.05
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:36927183 original size:48 final size:48
Alignment explanation
Indices: 36927066--36927238 Score: 153
Period size: 48 Copynumber: 3.7 Consensus size: 48
36927056 CACATAGTAA
* * **
36927066 GATGCCAATGCCATATCCCAGATATGGTCCT--ACATTGGATC--ATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACACAATGTCTCATATC
* * * *
36927110 TAT-CGAA-GCCGATAGCCCAGCTATGGTCTTACACAATGTCTCATATC
1 GATGCCAATGCC-ATATCCCAGATATGGTCTTACACAATGTCTCATATC
*** *
36927157 GATGCCAATGCCATATCCCAGATATGGTCTTACA-TGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACACAATG-TCTCATATC
* *
36927205 GATGCCAATGCCATGTCCCAGACATGGTCTTACA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACA
36927239 TGGGATTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 3 0.03
43 19 0.18
44 2 0.02
45 7 0.07
47 6 0.06
48 63 0.61
49 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACACAATGTCTCATATC
Found at i:36927239 original size:48 final size:48
Alignment explanation
Indices: 36927151--36927292 Score: 230
Period size: 48 Copynumber: 3.0 Consensus size: 48
36927141 CACAATGTCT
* *
36927151 CATATCGATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
*
36927199 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTA
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* * *
36927247 CAAATCAATGCCAATGCCATGTCCCGGACATGGTCTTACATGGGAT
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
36927293 AACACATAAC
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
Found at i:36936067 original size:19 final size:19
Alignment explanation
Indices: 36936045--36936100 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
36936035 ATGTTCTCAG
36936045 ATTTCTATTATGATATCAT
1 ATTTCTATTATGATATCAT
* * *
36936064 A----T-TTATGTTCTCAG
1 ATTTCTATTATGATATCAT
36936078 ATTTCTATTATGATATCAT
1 ATTTCTATTATGATATCAT
36936097 ATTT
1 ATTT
36936101 GGGTTTTCTT
Statistics
Matches: 26, Mismatches: 6, Indels: 10
0.62 0.14 0.24
Matches are distributed among these distances:
14 10 0.38
15 1 0.04
18 1 0.04
19 14 0.54
ACGTcount: A:0.29, C:0.11, G:0.07, T:0.54
Consensus pattern (19 bp):
ATTTCTATTATGATATCAT
Found at i:36936070 original size:33 final size:33
Alignment explanation
Indices: 36936033--36936100 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
36936023 TCATTATGCG
36936033 TTATGTTCTCAGATTTCTATTATGATATCATAT
1 TTATGTTCTCAGATTTCTATTATGATATCATAT
36936066 TTATGTTCTCAGATTTCTATTATGATATCATAT
1 TTATGTTCTCAGATTTCTATTATGATATCATAT
36936099 TT
1 TT
36936101 GGGTTTTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.26, C:0.12, G:0.09, T:0.53
Consensus pattern (33 bp):
TTATGTTCTCAGATTTCTATTATGATATCATAT
Found at i:36939369 original size:40 final size:40
Alignment explanation
Indices: 36939284--36939436 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
36939274 GGATATAGCG
* * * * ***
36939284 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * * *
36939324 GCTCGCATAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
36939364 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
36939404 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
36939437 CATCATTCGA
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 76 0.84
41 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:36942994 original size:37 final size:37
Alignment explanation
Indices: 36942941--36943026 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
36942931 TTATTACGAA
36942941 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
36942978 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
36943015 GTCTCACCCGGA
1 GTCTTACCCGGA
36943027 ACATTTTCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:36943206 original size:49 final size:47
Alignment explanation
Indices: 36943127--36943439 Score: 468
Period size: 49 Copynumber: 6.5 Consensus size: 47
36943117 TTTTACATTA
36943127 GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
36943174 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCACCACATCG
36943223 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCACCACATCG
*
36943272 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCACCACATCG
* *
36943321 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
* * * *
36943368 GCCA-TACGGCCTTATCACACATATGCACTTTCACATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATATACACTTTCACATTCACCACATCG
*
36943415 GCCATTCA-GCCTTATCACACATATA
1 GCCATT-AGGCCTTATCACATATATA
36943440 TGTATATCAT
Statistics
Matches: 256, Mismatches: 5, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
46 2 0.01
47 108 0.42
48 1 0.00
49 145 0.57
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACATCG
Found at i:36946280 original size:56 final size:55
Alignment explanation
Indices: 36946192--36946359 Score: 212
Period size: 56 Copynumber: 3.0 Consensus size: 55
36946182 GACCATGGCA
*
36946192 TCGATATATGTGTATGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGAT
1 TCGATATATGTGTACGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGAT
* *
36946247 TCTGATATATGTGTCCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACT
1 TC-GATATATGTGTACGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGA-T
* * *** * *
36946304 TCGATATATGTGTGCAAGTAAGACC-CTGTTTGGGAAAGTGGCATCGATATGTGAT
1 TCGATATATGTGTACGAGTAAGACCAC-GTTTAATACATTGGCATCGATATGTGAT
36946359 T
1 T
36946360 ACATGTAAGG
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
55 5 0.05
56 91 0.92
57 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (55 bp):
TCGATATATGTGTACGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGAT
Found at i:36948778 original size:48 final size:48
Alignment explanation
Indices: 36948641--36948874 Score: 221
Period size: 48 Copynumber: 5.0 Consensus size: 48
36948631 CACATAGTAA
* *
36948641 GATGCCAATGCCATATCCCAAATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * *
36948689 GAAG-C-A-G--ATAGCCCAGCTATGGTCTTACA--CGATGCCTCATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGAT--CACATATC
*
36948732 GATGCCAATGCCATATCCCTGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* ** * * * *
36948780 TATGCCAATATCATGTCCCAGACATGATCTTACATAGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * ** *
36948828 GGTGCCAATGCCATGTCTTAGACATGGTCTTACATGGGATCACATAT
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
36948875 AACCATAATG
Statistics
Matches: 148, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
41 3 0.02
43 28 0.19
44 1 0.01
45 2 0.01
46 2 0.01
47 1 0.01
48 108 0.73
50 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:36958396 original size:12 final size:12
Alignment explanation
Indices: 36958376--36958407 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
36958366 TTTTGGATTA
*
36958376 TTTTGATGTTCC
1 TTTTTATGTTCC
36958388 TTTTTATGTTCC
1 TTTTTATGTTCC
36958400 TTTTTATG
1 TTTTTATG
36958408 CAATGTGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.12, G:0.12, T:0.66
Consensus pattern (12 bp):
TTTTTATGTTCC
Found at i:36960659 original size:22 final size:22
Alignment explanation
Indices: 36960634--36960682 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
36960624 TTTAGCTCTA
36960634 ATTTTAAAAAT-TATAAAAATAT
1 ATTTTAAAAATCT-TAAAAATAT
* *
36960656 ATTTAAAAAATCTTTAAAATAT
1 ATTTTAAAAATCTTAAAAATAT
36960678 -TTTTA
1 ATTTTA
36960683 TATTTACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.17
22 18 0.78
23 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTTTAAAAATCTTAAAAATAT
Found at i:36960793 original size:1 final size:1
Alignment explanation
Indices: 36960787--36960812 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
36960777 AAATTAAAGC
36960787 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
36960813 AGTCTCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:36960885 original size:17 final size:17
Alignment explanation
Indices: 36960863--36960895 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36960853 TCAAATTGAG
*
36960863 TTGAGAAATTTATTTAA
1 TTGAGAAATTAATTTAA
36960880 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
36960896 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:36966045 original size:4 final size:4
Alignment explanation
Indices: 36966022--36966064 Score: 58
Period size: 4 Copynumber: 11.8 Consensus size: 4
36966012 CAAAGCCTAG
36966022 TTTA TTT- TTT- TTTA -TT- TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
36966065 TCAACTATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 10 0.28
4 26 0.72
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (4 bp):
TTTA
Found at i:36967807 original size:26 final size:26
Alignment explanation
Indices: 36967748--36967809 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
36967738 TCTCTAGTTT
36967748 GAAAATCATCCTAACTAATCTCGCTC
1 GAAAATCATCCTAACTAATCTCGCTC
*
36967774 GAAGATCATCCTAACTAATCTCGCTTC
1 GAAAATCATCCTAACTAATCTCGC-TC
36967801 -AAAATCATC
1 GAAAATCATC
36967810 TTTCTCCGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 31 0.94
27 2 0.06
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.27
Consensus pattern (26 bp):
GAAAATCATCCTAACTAATCTCGCTC
Found at i:36968695 original size:16 final size:15
Alignment explanation
Indices: 36968660--36968694 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
36968650 ACAATGTAGG
*
36968660 AAAAAGGGACTAAAT
1 AAAAAGAGACTAAAT
*
36968675 CAAAAGAGACTAAAT
1 AAAAAGAGACTAAAT
36968690 AAAAA
1 AAAAA
36968695 AATAGTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.66, C:0.09, G:0.14, T:0.11
Consensus pattern (15 bp):
AAAAAGAGACTAAAT
Found at i:36971053 original size:20 final size:21
Alignment explanation
Indices: 36971030--36971072 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36971020 ATAAGCATGT
*
36971030 ATTTTG-ATGTTTGATGATAG
1 ATTTTGAATGCTTGATGATAG
*
36971050 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTGATGATAG
36971071 AT
1 AT
36971073 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTGATGATAG
Found at i:36973438 original size:40 final size:40
Alignment explanation
Indices: 36973394--36973564 Score: 157
Period size: 40 Copynumber: 4.2 Consensus size: 40
36973384 CTTTGGGACA
* * *
36973394 TAGCCCGG-TTATAGTGATTCGCACAATTGCCTTCGGGAAT
1 TAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAAT
* ** *
36973434 TAGCCCGGATTTAGTAACTCGCATAAATGCCTTCGTTACT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * * * * *
36973474 TAACCTGGTTTTGGTAACTCGCACCAATGGCTTCGGGAAT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * *
36973514 T-GACCCGGATTTAGTCACTTCGCACAAAAGCCTTCGGGACT
1 TAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAAT
36973555 TAGCCCGGAT
1 TAGCCCGGAT
36973565 ATCATTCGAA
Statistics
Matches: 101, Mismatches: 26, Indels: 7
0.75 0.19 0.05
Matches are distributed among these distances:
40 72 0.71
41 28 0.28
42 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (40 bp):
TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
Found at i:36977378 original size:23 final size:23
Alignment explanation
Indices: 36977352--36977400 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
36977342 CTAAAAGTAT
36977352 TTAATAGCTATAGAACCTTAAAG
1 TTAATAGCTATAGAACCTTAAAG
36977375 TTAATAGCTATAGAACCTTAAAG
1 TTAATAGCTATAGAACCTTAAAG
36977398 TTA
1 TTA
36977401 GGGTCCTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (23 bp):
TTAATAGCTATAGAACCTTAAAG
Found at i:36977785 original size:20 final size:21
Alignment explanation
Indices: 36977762--36977805 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
36977752 AATAAGAATG
36977762 GATTTTG-ATGTTTGATGATA
1 GATTTTGAATGTTTGATGATA
*
36977782 GATTTTGAATGTTTGTTGATA
1 GATTTTGAATGTTTGATGATA
36977803 GAT
1 GAT
36977806 ATACAAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (21 bp):
GATTTTGAATGTTTGATGATA
Found at i:36980003 original size:40 final size:40
Alignment explanation
Indices: 36979948--36980157 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
36979938 AACATTGGAA
36979948 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
36979988 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
36980028 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
36980068 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
36980107 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
36980148 CTATATCCGG
1 ATATATCCGG
36980158 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:36982519 original size:2 final size:2
Alignment explanation
Indices: 36982514--36982545 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
36982504 ATTATATAAC
36982514 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36982546 TAGCATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36984747 original size:39 final size:39
Alignment explanation
Indices: 36984623--36984727 Score: 174
Period size: 39 Copynumber: 2.7 Consensus size: 39
36984613 GAGATTGGAA
36984623 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
*
36984662 ATATCCGGACATGAGATCCGCAGACTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* * *
36984701 ATATCCGGACTTGAGGTCTGCAGGCTA
1 ATATCCGGACATGAGATCCGCAGGCTA
36984728 CGTGCTGGGA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:36992639 original size:40 final size:40
Alignment explanation
Indices: 36992561--36992783 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
36992551 ACCCAAGTAT
* *
36992561 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
36992600 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
36992640 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36992680 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
36992723 CTTCGGGACTTAG-CCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36992762 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGACTTAGCCCGGATAT
36992784 CATCCGAATA
Statistics
Matches: 163, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 35 0.21
40 92 0.56
41 1 0.01
42 12 0.07
43 23 0.14
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:37000788 original size:39 final size:40
Alignment explanation
Indices: 37000686--37000907 Score: 247
Period size: 40 Copynumber: 5.5 Consensus size: 40
37000676 ACCCAAGTAT
* * *
37000686 CTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * ** *
37000725 CTTTGGGTCTTAGCCCGGATATAGTCACTAGCATGAATTC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
37000765 CTTTGGGAC-TAGCCCGGATATAGTCACTAGCAC-AATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
37000803 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
37000846 CTTCGGGACTTAGCTCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
37000886 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
37000908 CATCCGAATA
Statistics
Matches: 156, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
38 13 0.08
39 49 0.31
40 59 0.38
41 1 0.01
42 4 0.03
43 30 0.19
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:37009357 original size:46 final size:46
Alignment explanation
Indices: 37009193--37009368 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
37009183 TGTAACCCGC
* * *
37009193 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CTTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * * * * *
37009239 CCATGAGTGAAATCAGACTCAACTCAACGAGTTTGGATGCCTAGTT-AC-T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
37009288 TC-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37009332 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37009369 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 3 0.03
45 4 0.04
46 56 0.55
47 26 0.26
48 2 0.02
49 3 0.03
50 1 0.01
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37009359 original size:93 final size:93
Alignment explanation
Indices: 37009200--37009371 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
37009190 CGCCCATAAG
* * *
37009200 CGAACTCGGACTCAACTCAATGAGCTCAGGCTTTCGCATCCATGAGTGAAATCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAAATCAGACTCAACTCA
*
37009265 ACGAGTTTGGATGCCTAGTTACTTCTCA
66 ACGAGTTCGGATGCCTAGTTACTTCTCA
* * *
37009293 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAAATCAGACTCAACTC
37009357 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
37009372 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAAATCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACTTCTCA
Found at i:37009387 original size:46 final size:45
Alignment explanation
Indices: 37009294--37009379 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
37009284 TACTTCTCAC
* *
37009294 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
37009340 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
37009380 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:37011800 original size:30 final size:30
Alignment explanation
Indices: 37011766--37011843 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 30
37011756 CAAGGAAACC
*
37011766 GAATAAAGAAATCCAAGACAGAGAAATCCA
1 GAATAAAGAAATCCAAGACAAAGAAATCCA
* * * *
37011796 GAATAAATAATTCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ACAAAGAAATCCA
* *
37011826 GGATAAAGAAACCCAAGA
1 GAATAAAGAAATCCAAGA
37011844 TATGATACTA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
29 2 0.05
30 33 0.89
31 2 0.05
ACGTcount: A:0.55, C:0.15, G:0.17, T:0.13
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGACAAAGAAATCCA
Found at i:37011825 original size:15 final size:14
Alignment explanation
Indices: 37011790--37011835 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
37011780 AAGACAGAGA
*
37011790 AATCCAGAATAAAT
1 AATCCAGAATAAAG
37011804 AATTCCAGAATAAAG
1 AA-TCCAGAATAAAG
*
37011819 AGATCCAGGATAAAG
1 A-ATCCAGAATAAAG
37011834 AA
1 AA
37011836 ACCCAAGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 3 0.11
15 24 0.86
16 1 0.04
ACGTcount: A:0.54, C:0.13, G:0.15, T:0.17
Consensus pattern (14 bp):
AATCCAGAATAAAG
Found at i:37014688 original size:24 final size:24
Alignment explanation
Indices: 37014658--37014744 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
37014648 CTTATTATGT
37014658 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
37014682 TCTCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37014706 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
37014730 TCGCACACATAGTGC
1 TCGCACACATAGTGC
37014745 ATTTGAGATT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:37017977 original size:93 final size:93
Alignment explanation
Indices: 37017818--37017987 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
37017808 CCCATAAGCA
* * *
37017818 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
37017883 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
37017911 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
37017976 GAGTTCGGATGC
66 GAGTTCGGATGC
37017988 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:37017984 original size:46 final size:46
Alignment explanation
Indices: 37017809--37017984 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
37017799 TGTAACCTGC
* * * *
37017809 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
37017855 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
37017905 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37017948 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37017985 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37018003 original size:46 final size:46
Alignment explanation
Indices: 37017860--37017996 Score: 140
Period size: 47 Copynumber: 3.0 Consensus size: 46
37017850 CGCATCCATG
37017860 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTC
* * * * *
37017908 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTC
37017953 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
37017997 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 30 0.41
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTC
Found at i:37021521 original size:6 final size:6
Alignment explanation
Indices: 37021500--37021539 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
37021490 GTTTAAGAGC
* *
37021500 TTTTTA TTTATTA TTTTTA TTTTCA TTTTTA TCTTTA TTT
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
37021540 ATCTTCTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:37024768 original size:41 final size:41
Alignment explanation
Indices: 37024723--37024840 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37024713 TGAAAGATAA
37024723 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37024764 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37024794 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37024835 ATGTAG
1 ATGTAG
37024841 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37024779 original size:71 final size:71
Alignment explanation
Indices: 37024691--37024854 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37024681 GAGATGTATC
37024691 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37024756 AGGACA
66 AGGACA
37024762 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37024827 AGGACA
66 AGGACA
37024833 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37024855 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37030596 original size:41 final size:41
Alignment explanation
Indices: 37030551--37030668 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37030541 TGAAAGATAA
37030551 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37030592 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37030622 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37030663 ATGTAG
1 ATGTAG
37030669 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37030607 original size:71 final size:71
Alignment explanation
Indices: 37030519--37030682 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37030509 GAGATGTATC
37030519 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37030584 AGGACA
66 AGGACA
37030590 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37030655 AGGACA
66 AGGACA
37030661 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37030683 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37032774 original size:28 final size:28
Alignment explanation
Indices: 37032742--37032809 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 28
37032732 AGTAAGTCCA
37032742 CACACTTAGTGCT-TA-ATAGTCAAACTCG
1 CACACTTAGTGCTATACA-A-TCAAACTCG
*
37032770 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCG
37032798 CACACTTAGTGC
1 CACACTTAGTGC
37032810 CAATCTCATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 33 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCG
Found at i:37040565 original size:28 final size:28
Alignment explanation
Indices: 37040533--37040602 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
37040523 ATAGTAAGTC
37040533 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
37040561 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
37040589 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37040603 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:37044859 original size:71 final size:71
Alignment explanation
Indices: 37044773--37044936 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37044763 CGATTTGTCT
37044773 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37044838 CTTTCA
66 CTTTCA
37044844 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37044909 CTTTCA
66 CTTTCA
37044915 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37044937 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37044974 original size:71 final size:70
Alignment explanation
Indices: 37044773--37044970 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37044763 CGATTTGTCT
* * * *
37044773 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37044838 CTTTCA
65 CTTTCA
* * * *
37044844 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37044909 CTTTCA
65 CTTTCA
* *
37044915 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37044971 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37052432 original size:71 final size:71
Alignment explanation
Indices: 37052348--37052511 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37052338 CGATTTGTCT
37052348 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37052413 CTTTCA
66 CTTTCA
37052419 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37052484 CTTTCA
66 CTTTCA
37052490 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37052512 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37052549 original size:71 final size:70
Alignment explanation
Indices: 37052348--37052545 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
37052338 CGATTTGTCT
* * * *
37052348 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37052413 CTTTCA
65 CTTTCA
* * * *
37052419 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
37052484 CTTTCA
65 CTTTCA
* *
37052490 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
37052546 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37056398 original size:40 final size:40
Alignment explanation
Indices: 37056341--37056550 Score: 307
Period size: 40 Copynumber: 5.2 Consensus size: 40
37056331 CTAACGGGGT
* * * *
37056341 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
37056381 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
37056421 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
37056461 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
37056501 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
37056541 TAAGACCCGA
1 TAAGTCCCGA
37056551 CGGCCTTGTG
Statistics
Matches: 159, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 157 0.99
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:37064281 original size:40 final size:40
Alignment explanation
Indices: 37064229--37064384 Score: 260
Period size: 40 Copynumber: 3.9 Consensus size: 40
37064219 GATTTAGCCA
*
37064229 GATATAGCAACTCGCACAAATGCCTTCGGAACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGAACTTAGCCCG
*
37064269 GATATAGTAACTCGCAAAAATGCCTTCGGAACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGAACTTAGCCCG
*
37064309 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGAACTTAGCCCG
*
37064349 GATATAGTAACTTGCACAAATGCCTTC-GAATCTTAG
1 GATATAGTAACTCGCACAAATGCCTTCGGAA-CTTAG
37064385 TCCGATTATC
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.02
40 107 0.98
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGAACTTAGCCCG
Found at i:37070269 original size:28 final size:29
Alignment explanation
Indices: 37070228--37070326 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
37070218 ATAATAAGCC
* * *
37070228 CGCACACTTTGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
37070256 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* * *
37070284 CGCACACTTAGTGC-TATACAATTTAAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
*
37070313 CACACACTTAGTGC
1 CGCACACTTAGTGC
37070327 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 2 0.03
28 42 0.68
29 18 0.29
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:37075576 original size:40 final size:40
Alignment explanation
Indices: 37075507--37075673 Score: 282
Period size: 40 Copynumber: 4.2 Consensus size: 40
37075497 AACCCAAGTA
* * *
37075507 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37075546 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
37075586 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
*
37075626 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
37075666 CCTTCGGA
1 CCTTCGGA
37075674 TATTAGTCCG
Statistics
Matches: 120, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 12 0.10
40 108 0.90
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37079966 original size:3 final size:3
Alignment explanation
Indices: 37079958--37079991 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
37079948 TGTTTATGAA
37079958 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
37079992 GTGATTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:37081029 original size:29 final size:29
Alignment explanation
Indices: 37080996--37081054 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
37080986 ACATATTAAA
37080996 GTTCAAACAAAACATAATAGCCTATACAT
1 GTTCAAACAAAACATAATAGCCTATACAT
37081025 GTTCAAACAAAACATAATAGCCTATACAT
1 GTTCAAACAAAACATAATAGCCTATACAT
37081054 G
1 G
37081055 CCGAAATGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.24
Consensus pattern (29 bp):
GTTCAAACAAAACATAATAGCCTATACAT
Found at i:37085634 original size:13 final size:13
Alignment explanation
Indices: 37085616--37085640 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37085606 TAATGGTATA
37085616 TTGAATCCATGAT
1 TTGAATCCATGAT
37085629 TTGAATCCATGA
1 TTGAATCCATGA
37085641 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:37087208 original size:48 final size:48
Alignment explanation
Indices: 37087149--37087562 Score: 765
Period size: 48 Copynumber: 8.6 Consensus size: 48
37087139 AAAGTGTAAT
37087149 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
37087197 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGGA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
37087245 TTTGTGGTGAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
37087293 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
37087341 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
37087389 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
37087437 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
37087485 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
37087533 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
37087563 TGTTGTAACA
Statistics
Matches: 354, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 354 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:37087657 original size:37 final size:37
Alignment explanation
Indices: 37087607--37087692 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
37087597 GGAAATGTAT
*
37087607 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
37087644 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
37087681 TCCGGGTAAGAC
1 TCCGGGTAAGAC
37087693 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
Found at i:37090257 original size:52 final size:52
Alignment explanation
Indices: 37090163--37090362 Score: 154
Period size: 52 Copynumber: 3.8 Consensus size: 52
37090153 TTCTAAACTT
* **
37090163 ACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATGACTC
1 ACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGACTC
* * * * *
37090215 ACCATTGCCATGCCTTGGCATGGTCTTACATGAG-ATCTTTGCCTTATCATAGTTT
1 ACCATTGCCATGCCTTGACATGGTCTTACATG-GTATCCTTGCCTTAT--GA-CTC
* * * * * * * *
37090270 ATCAATGCCATGTCTTGACTTGGTCTTACATGATTTCC-TGCCTTATAAAACTT
1 ACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT--GACTC
* *
37090323 ACCAATGCCATGCCTT-AGCATGGTCTTACTTGGTATCCTT
1 ACCATTGCCATGCCTTGA-CATGGTCTTACATGGTATCCTT
37090363 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 25, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
52 41 0.35
53 33 0.28
54 12 0.10
55 30 0.26
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.38
Consensus pattern (52 bp):
ACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGACTC
Found at i:37093790 original size:43 final size:43
Alignment explanation
Indices: 37093717--37093799 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
37093707 ATCAACATCG
* * * *
37093717 TATTTGATTTCGTGTAAGACCCTGTTTGGGACAG-TGGCATCAA
1 TATTTGATTACATGTAAGACCCTATCTGGGAC-GTTGGCATCAA
37093760 TATTTGATTACATGTAAGACCAC-ATCTGGGACGTTGGCAT
1 TATTTGATTACATGTAAGACC-CTATCTGGGACGTTGGCAT
37093800 TGTATGAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 1 0.03
43 32 0.94
44 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TATTTGATTACATGTAAGACCCTATCTGGGACGTTGGCATCAA
Found at i:37096729 original size:29 final size:29
Alignment explanation
Indices: 37096690--37096769 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
37096680 CTTAATAATC
*
37096690 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
37096720 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
37096749 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
37096770 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37110437 original size:40 final size:39
Alignment explanation
Indices: 37110269--37110439 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
37110259 AGAAATTGAA
* *
37110269 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
37110309 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
37110349 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
37110389 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
37110429 TGATATCCGGG
1 TGATATCCGGG
37110440 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Done.