Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 127 of 770
Found at i:37112260 original size:76 final size:76
Alignment explanation
Indices: 37112134--37112287 Score: 299
Period size: 76 Copynumber: 2.0 Consensus size: 76
37112124 ACCCAGAATC
*
37112134 ATTTGAATTAACTCTGGGTTTCTTAGAATACAAATTCGTTCTAGAAATCTCAAGAAATCATCTTT
1 ATTTGAATTAACTCTGGGTTTCTTAGAATACAAATTCGATCTAGAAATCTCAAGAAATCATCTTT
37112199 ATCAACTCTGA
66 ATCAACTCTGA
37112210 ATTTGAATTAACTCTGGGTTTCTTAGAATACAAATTCGATCTAGAAATCTCAAGAAATCATCTTT
1 ATTTGAATTAACTCTGGGTTTCTTAGAATACAAATTCGATCTAGAAATCTCAAGAAATCATCTTT
37112275 ATCAACTCTGA
66 ATCAACTCTGA
37112286 AT
1 AT
37112288 CAGACTCTAC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (76 bp):
ATTTGAATTAACTCTGGGTTTCTTAGAATACAAATTCGATCTAGAAATCTCAAGAAATCATCTTT
ATCAACTCTGA
Found at i:37120503 original size:40 final size:40
Alignment explanation
Indices: 37120444--37120585 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
37120434 AAATTGAATG
* * *
37120444 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
37120484 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
37120524 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
37120564 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
37120586 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:37120586 original size:40 final size:39
Alignment explanation
Indices: 37120483--37120611 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
37120473 TGCTGGAAAT
* * *
37120483 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
37120523 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
37120563 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
37120603 TATATCCGG
1 TATATCCGG
37120612 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:37125955 original size:80 final size:80
Alignment explanation
Indices: 37125871--37126019 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
37125861 TATGGTAACC
* * * *
37125871 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTCGCACAAATGCCTTCGGGTCTTAA
37125935 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
37125951 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTCGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTCGCACAAATGCCTTCGGGTCTTAAC
37126016 CCGG
66 CCGG
37126020 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTCGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:37125961 original size:40 final size:38
Alignment explanation
Indices: 37125912--37126019 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 38
37125902 ATCACGATTT
37125912 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTC
*
37125952 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTC
*
37125992 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
37126020 TTATAATTTC
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 57 0.92
ACGTcount: A:0.20, C:0.31, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTC
Found at i:37132054 original size:2 final size:2
Alignment explanation
Indices: 37132047--37132076 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37132037 TTACAGATAC
37132047 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37132077 TTGCGGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37132694 original size:17 final size:19
Alignment explanation
Indices: 37132672--37132712 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
37132662 GGTTCATTAT
37132672 TGATTTATAT-TT-TAATA
1 TGATTTATATATTATAATA
*
37132689 TGATTTATATATTATATTA
1 TGATTTATATATTATAATA
37132708 TGATT
1 TGATT
37132713 AATAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 2 0.10
19 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TGATTTATATATTATAATA
Found at i:37136768 original size:44 final size:45
Alignment explanation
Indices: 37136678--37136806 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
37136668 GACAGAACGA
*
37136678 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
37136724 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
37136768 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
37136807 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:37141090 original size:41 final size:41
Alignment explanation
Indices: 37141045--37141162 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37141035 TGAAAGATAA
37141045 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37141086 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37141116 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37141157 ATGTAG
1 ATGTAG
37141163 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37141101 original size:71 final size:71
Alignment explanation
Indices: 37141013--37141176 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37141003 GAGATGTATC
37141013 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37141078 AGGACA
66 AGGACA
37141084 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37141149 AGGACA
66 AGGACA
37141155 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37141177 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37145679 original size:44 final size:45
Alignment explanation
Indices: 37145589--37145717 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
37145579 GACAGAACGA
*
37145589 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
37145635 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
37145679 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
37145718 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:37150000 original size:41 final size:41
Alignment explanation
Indices: 37149955--37150072 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
37149945 TGAAAGATAA
37149955 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
37149996 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37150026 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
37150067 ATGTAG
1 ATGTAG
37150073 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:37150011 original size:71 final size:71
Alignment explanation
Indices: 37149923--37150086 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37149913 GAGATGTATC
37149923 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37149988 AGGACA
66 AGGACA
37149994 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37150059 AGGACA
66 AGGACA
37150065 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37150087 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:37154593 original size:44 final size:45
Alignment explanation
Indices: 37154503--37154631 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
37154493 GACAGAACGA
*
37154503 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
37154549 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
37154593 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
37154632 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:37157022 original size:40 final size:39
Alignment explanation
Indices: 37156967--37157210 Score: 339
Period size: 40 Copynumber: 6.1 Consensus size: 39
37156957 CGGATGATAA
*
37156967 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
37157007 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-T
*
37157047 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
37157087 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAT
*
37157127 CCGGGCTAAGTCCCGAAGACATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* ** *
37157167 CCGGGCTAAGTCCCAAAGGCATTTAAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
37157207 CCGG
1 CCGG
37157211 TTAAAGCCCG
Statistics
Matches: 190, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
39 3 0.02
40 183 0.96
41 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:37160106 original size:55 final size:54
Alignment explanation
Indices: 37159926--37160135 Score: 196
Period size: 55 Copynumber: 3.9 Consensus size: 54
37159916 TGTCCTTTTG
* * * * *
37159926 AAACTTACC-AGTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT
1 AAACTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTAT
* * * * * * *
37159979 GAACTCACCAA-TGCCATGCCTTGGCATGGTCTTTCATGGGACAT--TTTCCATAT
1 AAACTTACCAATTGCCATGCCTTGACATGGTCTTACAT--GATATCCTTACCTTAT
* *
37160032 AGTAACTTATCAATT-CCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAT
1 A--AACTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTAT
* *
37160087 AAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTA
1 AAA-CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTA
37160136 AACCCTAATG
Statistics
Matches: 124, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
53 42 0.34
54 10 0.08
55 71 0.57
56 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (54 bp):
AAACTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTAT
Found at i:37167403 original size:2 final size:2
Alignment explanation
Indices: 37167396--37167423 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37167386 ATGATTACAG
37167396 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37167424 TTGTGGATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37168035 original size:17 final size:19
Alignment explanation
Indices: 37168013--37168053 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
37168003 GGTTCATTAT
37168013 TGATTTATAT-TT-TAATA
1 TGATTTATATATTATAATA
*
37168030 TGATTTATATATTATATTA
1 TGATTTATATATTATAATA
37168049 TGATT
1 TGATT
37168054 AAAAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 2 0.10
19 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TGATTTATATATTATAATA
Found at i:37172756 original size:16 final size:16
Alignment explanation
Indices: 37172735--37172765 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37172725 ATCAGCAAAA
37172735 GTCGAAATGCCGAAAT
1 GTCGAAATGCCGAAAT
37172751 GTCGAAATGCCGAAA
1 GTCGAAATGCCGAAA
37172766 GTTTGGCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.19, G:0.26, T:0.16
Consensus pattern (16 bp):
GTCGAAATGCCGAAAT
Found at i:37173031 original size:29 final size:28
Alignment explanation
Indices: 37172975--37173089 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
37172965 GTGAGCATGA
* * *
37172975 ATATGAATGTGACTGGGCCTAGTGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
37173003 ATATAAATGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
37173032 ATATACAGGTGATTTGGGACTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
37173061 CTATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
37173089 A
1 A
37173090 GATACAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 25 0.36
29 45 0.64
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:37173089 original size:57 final size:58
Alignment explanation
Indices: 37172988--37173098 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 58
37172978 TGAATGTGAC
* * * *
37172988 TGGGCCTAGTGGGCCATATAAATGTGATTTGGGCCTAATAGGCCATATACAGGTGATT
1 TGGGACTAATGGGCCATATAAATATGATTTGGGCCTAATAGGCCAGATACAGGTGATT
* * * *
37173046 TGGGACTAATGGGCCCTATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGACTAATGGGCCATATAAATATGATTTGGGCCTAATAGGCCAGATACAGGT
37173099 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (58 bp):
TGGGACTAATGGGCCATATAAATATGATTTGGGCCTAATAGGCCAGATACAGGTGATT
Found at i:37174744 original size:20 final size:20
Alignment explanation
Indices: 37174719--37174765 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
37174709 GCAGGTGAAG
*
37174719 GTCTACTAGCGGTAGAATAA
1 GTCTACTAGCAGTAGAATAA
37174739 GTCTACTAGCAGTAGAATAA
1 GTCTACTAGCAGTAGAATAA
37174759 GTCTACT
1 GTCTACT
37174766 GACAACCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (20 bp):
GTCTACTAGCAGTAGAATAA
Found at i:37175915 original size:15 final size:16
Alignment explanation
Indices: 37175895--37175924 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37175885 GATCAACTAC
37175895 TTAACAT-ATATGTGG
1 TTAACATAATATGTGG
37175910 TTAACATAATATGTG
1 TTAACATAATATGTG
37175925 TAATAGCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.40
Consensus pattern (16 bp):
TTAACATAATATGTGG
Found at i:37177250 original size:69 final size:70
Alignment explanation
Indices: 37177118--37177250 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
37177108 TAGTTTATTA
* * * * *
37177118 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
37177183 CTTAG
66 CTTAG
37177188 CTAATTAATATGCTACTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
37177251 GCTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:37177960 original size:2 final size:2
Alignment explanation
Indices: 37177953--37177978 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37177943 GTTATGATAC
37177953 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37177979 GTGCATGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37178058 original size:39 final size:39
Alignment explanation
Indices: 37177997--37178251 Score: 327
Period size: 39 Copynumber: 6.5 Consensus size: 39
37177987 TAATGGAGAA
*
37177997 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
37178036 TATGTCCGGGCTAAGTCTCGAAGACATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
37178075 TATATCCGGGCTAAGTCTCGAAGGCA-TCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
37178113 TATATCCAGGCTAAGCCCCGAAGGCATTCGTGCTCGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
37178152 TATATCCGGGCTAAGCCCCAAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
37178191 TATATCCGGGCTAAAGTCCC-ATAGGC-TTTGTGCTAGTAT
1 TATATCCGGGCT-AAGTCCCGA-AGGCATTCGTGCTGGTGT
*
37178230 TATATTCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
37178252 CATGCTTTGT
Statistics
Matches: 193, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 35 0.18
39 139 0.72
40 19 0.10
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:37178135 original size:77 final size:78
Alignment explanation
Indices: 37177997--37178204 Score: 319
Period size: 77 Copynumber: 2.7 Consensus size: 78
37177987 TAATGGAGAA
* * * *
37177997 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCTCGAAGACA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGACA
*
37178062 TTCGTGCTGGTGT
66 TTCGTGCTCGTGT
* * *
37178075 TATATCCGGGCTAAGTCTCGAAGGCA-TCGTGCTGGTGTTATATCCAGGCTAAGCCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGACA
37178139 TTCGTGCTCGTGT
66 TTCGTGCTCGTGT
* *
37178152 TATATCCGGGCTAAGCCCCAAAGGCATTCGTGCTGGTGTTATATCCGGGCTAA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAA
37178205 AGTCCCATAG
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 68 0.58
78 49 0.42
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (78 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGACA
TTCGTGCTCGTGT
Found at i:37183626 original size:29 final size:29
Alignment explanation
Indices: 37183592--37183690 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
37183582 CAGCCGCGCG
*
37183592 CACTTAGTGCCATATACTTT-AAACTCGCA
1 CACTTAGTGCCAT-TACTTTCAAGCTCGCA
*
37183621 CACTTAGTGCC-TTGCATTTCAAGCTCGCA
1 CACTTAGTGCCATTAC-TTTCAAGCTCGCA
* *
37183650 TACTTAGTGCCA-TGCATTTCAAGCTCGCA
1 CACTTAGTGCCATTAC-TTTCAAGCTCGCA
*
37183679 CACTCAGTGCCA
1 CACTTAGTGCCA
37183691 ATCTCTCAAC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 56 0.90
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
CACTTAGTGCCATTACTTTCAAGCTCGCA
Found at i:37193218 original size:24 final size:22
Alignment explanation
Indices: 37193189--37193244 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 22
37193179 TGTATATTTA
*
37193189 AAATTTAAAATTTTTTATTTTT
1 AAATTTAAAATTTTTAATTTTT
**
37193211 AGTAATTTAGTATTTTTAATTTTT
1 A--AATTTAAAATTTTTAATTTTT
37193235 AAATTTAAAA
1 AAATTTAAAA
37193245 ATTCAGATCT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
22 8 0.30
24 19 0.70
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
AAATTTAAAATTTTTAATTTTT
Found at i:37194371 original size:10 final size:11
Alignment explanation
Indices: 37194334--37194364 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37194324 CAATAAAATT
*
37194334 AATTTTTGTTA
1 AATTTTTATTA
37194345 AATTTTTATTA
1 AATTTTTATTA
37194356 AATTTTTAT
1 AATTTTTAT
37194365 CAATTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (11 bp):
AATTTTTATTA
Found at i:37196720 original size:30 final size:30
Alignment explanation
Indices: 37196624--37196721 Score: 76
Period size: 30 Copynumber: 3.2 Consensus size: 30
37196614 AACTTTCATA
*
37196624 AAACCTCTAAAA--TTTTAGAAAGTTTTAATT
1 AAACCT-TAAAATTTTTTA-AAATTTTTAATT
* * * *
37196654 AGA-CTTACAAATTTTTTTGAAAATTCTTACTA
1 AAACCTTA-AAA-TTTTTT-AAAATTTTTAATT
*
37196686 AAACCTTAAAATTTTTTAAAATTTTTAGTT
1 AAACCTTAAAATTTTTTAAAATTTTTAATT
37196716 AAACCT
1 AAACCT
37196722 CTTAAAACTT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
28 2 0.04
29 5 0.09
30 18 0.34
31 6 0.11
32 17 0.32
33 5 0.09
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (30 bp):
AAACCTTAAAATTTTTTAAAATTTTTAATT
Found at i:37196776 original size:2 final size:2
Alignment explanation
Indices: 37196769--37196796 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37196759 TGCAAATGTA
37196769 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37196797 TTATTAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37197050 original size:2 final size:2
Alignment explanation
Indices: 37197043--37197071 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37197033 CTAAAGAATA
37197043 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37197072 AAAGTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37198341 original size:20 final size:20
Alignment explanation
Indices: 37198316--37198368 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
37198306 AAATATAAAA
37198316 TTTGAATTTTTTATAAA-TAT
1 TTTGAATTTTTTA-AAATTAT
*
37198336 TTTGAATTTTTGAAAATTAT
1 TTTGAATTTTTTAAAATTAT
37198356 TTTGAATTATTTT
1 TTTGAATT-TTTT
37198369 GTAATCTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (20 bp):
TTTGAATTTTTTAAAATTAT
Found at i:37198868 original size:17 final size:18
Alignment explanation
Indices: 37198848--37198891 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
37198838 AAAAAATTTA
37198848 AAAATAATAAACTTT-CT
1 AAAATAATAAACTTTCCT
* *
37198865 AAAATATAAAAAGTTTCCT
1 AAAATA-ATAAACTTTCCT
37198884 AAAATAAT
1 AAAATAAT
37198892 TTAAAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 6 0.27
18 8 0.36
19 8 0.36
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAATAATAAACTTTCCT
Found at i:37198885 original size:19 final size:19
Alignment explanation
Indices: 37198846--37198889 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37198836 CAAAAAAATT
37198846 TAAAA-ATAATAAACTTTC
1 TAAAATATAATAAACTTTC
*
37198864 TAAAATATAA-AAAGTTTCC
1 TAAAATATAATAAACTTT-C
37198883 TAAAATA
1 TAAAATA
37198890 ATTTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (19 bp):
TAAAATATAATAAACTTTC
Found at i:37200505 original size:28 final size:28
Alignment explanation
Indices: 37200473--37200526 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
37200463 TTAGACATAA
37200473 ATTTAATCTGCAAATACGTAATTAAAAG
1 ATTTAATCTGCAAATACGTAATTAAAAG
37200501 ATTTAATCTGCAAATACGTAATTAAA
1 ATTTAATCTGCAAATACGTAATTAAA
37200527 TGCTTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.33
Consensus pattern (28 bp):
ATTTAATCTGCAAATACGTAATTAAAAG
Found at i:37200655 original size:19 final size:20
Alignment explanation
Indices: 37200615--37200656 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
37200605 TCGTAAACCG
37200615 ATTAAGATAAAGTTTATATT
1 ATTAAGATAAAGTTTATATT
37200635 ATTAAGATAAAGTTT-TATT
1 ATTAAGATAAAGTTTATATT
37200654 ATT
1 ATT
37200657 GCATGTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (20 bp):
ATTAAGATAAAGTTTATATT
Found at i:37205513 original size:3 final size:3
Alignment explanation
Indices: 37205505--37205543 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
37205495 TTTAATTTAA
37205505 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA
37205544 ACTTATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:37208683 original size:55 final size:55
Alignment explanation
Indices: 37208523--37208645 Score: 246
Period size: 55 Copynumber: 2.2 Consensus size: 55
37208513 ACAGGCGTGC
37208523 GACACACCCGTGTGAAAGACTCGTGGTTGAACTTGTTAAAATAGCACGGGCATGT
1 GACACACCCGTGTGAAAGACTCGTGGTTGAACTTGTTAAAATAGCACGGGCATGT
37208578 GACACACCCGTGTGAAAGACTCGTGGTTGAACTTGTTAAAATAGCACGGGCATGT
1 GACACACCCGTGTGAAAGACTCGTGGTTGAACTTGTTAAAATAGCACGGGCATGT
37208633 GACACACCCGTGT
1 GACACACCCGTGT
37208646 CTAACAATCG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (55 bp):
GACACACCCGTGTGAAAGACTCGTGGTTGAACTTGTTAAAATAGCACGGGCATGT
Found at i:37208745 original size:13 final size:13
Alignment explanation
Indices: 37208727--37208767 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
37208717 AACGAAGCTA
*
37208727 GACACGGCCGTGT
1 GACACGACCGTGT
37208740 GACACGACCGTGT
1 GACACGACCGTGT
*
37208753 AACACGACCGTGT
1 GACACGACCGTGT
37208766 GA
1 GA
37208768 ACCCACACGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.15
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:37210126 original size:22 final size:22
Alignment explanation
Indices: 37210101--37210142 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37210091 TGATGGATGC
*
37210101 GTATTGAGTTA-TAATATGTAAT
1 GTATT-AGTTAGTAAAATGTAAT
37210123 GTATTAGTTAGTAAAATGTA
1 GTATTAGTTAGTAAAATGTA
37210143 TGCCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (22 bp):
GTATTAGTTAGTAAAATGTAAT
Found at i:37210882 original size:40 final size:39
Alignment explanation
Indices: 37210809--37211029 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 39
37210799 CGAATGATGA
*
37210809 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAAT
*
37210849 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
37210888 CCGGACTAAGATCCGAAGGTATTTGTGCGAGTTACT-AAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
37210927 CCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 -CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
*
37210967 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AAT
*
37211007 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGT-CCGAAGGCATT
37211030 CGAACGAGTA
Statistics
Matches: 163, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
39 72 0.44
40 81 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:37210968 original size:79 final size:77
Alignment explanation
Indices: 37210809--37211029 Score: 257
Period size: 79 Copynumber: 2.8 Consensus size: 77
37210799 CGAATGATGA
* * * * * *
37210809 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGACTAAGTCCCGAAGGATTTGTGC-GAGTTACT-AATCCGGGCTAAGACCCGAAGGCATTGG
37210874 TGCGAGTTACTAAT
64 TGCGAGTTACTAAT
37210888 CCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTG
1 CCGGACTAAG-TCCCGAAGG-ATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGAAGGCATTG
37210951 GTGCGAGTTACTAAAT
63 GTGCGAGTTACT-AAT
** * * *
37210967 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 CCGGACTAAGTCCCGAAGG-ATTTGTGCGAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
37211030 CGAACGAGTA
Statistics
Matches: 124, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
78 27 0.22
79 76 0.61
80 21 0.17
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGACTAAGTCCCGAAGGATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGGTG
CGAGTTACTAAT
Found at i:37211053 original size:79 final size:77
Alignment explanation
Indices: 37210815--37211054 Score: 256
Period size: 79 Copynumber: 3.0 Consensus size: 77
37210805 ATGACCGGGC
* * *
37210815 TAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA-CCGGGCTAAG-TCCCGAAGGCATTCGTGCG
*
37210878 AGTTACTAATCCGGAC
63 AGTTACTAATCCGG-T
* * *
37210894 TAAGAT-CCGAAGGTATTTGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTGGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ACCGGGCTAAGTCCCGAAGGCATTCGTGCGA
37210957 GTTACTAAATCCGGGT
64 GTTACT-AATCC-GGT
* **
37210973 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTCGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCATTCGTGCGAG
37211038 -TAGCTATATCCGGT
65 TTA-CTA-ATCCGGT
37211052 TAA
1 TAA
37211055 ATTCCAAAGG
Statistics
Matches: 138, Mismatches: 12, Indels: 22
0.80 0.07 0.13
Matches are distributed among these distances:
78 24 0.17
79 80 0.58
80 34 0.25
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
TACTAATCCGGT
Found at i:37218311 original size:22 final size:22
Alignment explanation
Indices: 37218286--37218327 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37218276 TGATGGATGC
*
37218286 GTATTGAGTTA-TAATATGTAAT
1 GTATT-AGTTAGTAAAATGTAAT
37218308 GTATTAGTTAGTAAAATGTA
1 GTATTAGTTAGTAAAATGTA
37218328 TGCCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (22 bp):
GTATTAGTTAGTAAAATGTAAT
Found at i:37219064 original size:39 final size:38
Alignment explanation
Indices: 37218992--37219212 Score: 273
Period size: 39 Copynumber: 5.6 Consensus size: 38
37218982 CGAATGATGA
*
37218992 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT
*
37219031 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
37219070 CCGGACTAAGATCCGAAGGTATTTGTACGAGTTACTAAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
37219109 CCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
37219148 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AT
*
37219188 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTG
37219213 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 21 0.13
39 86 0.53
40 55 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (38 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:37226426 original size:22 final size:22
Alignment explanation
Indices: 37226401--37226442 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37226391 TGATGGATGC
*
37226401 GTATTGAGTTA-TAATATGTAAT
1 GTATT-AGTTAGTAAAATGTAAT
37226423 GTATTAGTTAGTAAAATGTA
1 GTATTAGTTAGTAAAATGTA
37226443 TGCCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (22 bp):
GTATTAGTTAGTAAAATGTAAT
Found at i:37227266 original size:40 final size:39
Alignment explanation
Indices: 37227111--37227327 Score: 271
Period size: 39 Copynumber: 5.5 Consensus size: 39
37227101 AATGATGACC
*
37227111 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATCCG
*
37227150 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATCCG
* * *
37227189 GACTAAGAT-CCGAAGGTATTTGTACGAGTTACTAATCCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT-CCG
*
37227229 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AATCCG
* *
37227268 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCG
*
37227308 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
37227328 CGAACGGGTA
Statistics
Matches: 158, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 92 0.58
40 66 0.42
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCG
Found at i:37227289 original size:79 final size:78
Alignment explanation
Indices: 37227109--37227327 Score: 266
Period size: 79 Copynumber: 2.8 Consensus size: 78
37227099 CGAATGATGA
* * * *
37227109 CCGG-CTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGG
37227172 TGCGAGTTACTAAT
65 TGCGAGTTACTAAT
* *
37227186 CCGGACTAAGAT-CCGAAGGTATTTGTACGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTG
1 CCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGAAGGCATTG
37227249 GTGCGAGTTACTAAAT
64 GTGCGAGTTACT-AAT
** * * *
37227265 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
37227328 CGAACGGGTA
Statistics
Matches: 122, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
77 4 0.03
78 46 0.38
79 59 0.48
80 13 0.11
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGGT
GCGAGTTACTAAT
Found at i:37227360 original size:79 final size:79
Alignment explanation
Indices: 37227120--37227362 Score: 194
Period size: 79 Copynumber: 3.1 Consensus size: 79
37227110 CGGCTAAGTC
* * * * * ** *
37227120 CCGAAGGC-TTTGTGCTAAGTTACTAAT-CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTTGTAC-GAGTTACTAATACCGGGCTAAG-CCCGAAGGCATTCGAACGAGGTACT
**
37227183 -AATCCGGACTAAGA-T
64 AAATCCGGGTTAA-ATT
* * * ** *
37227198 CCGAAGGTATTTGTACGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTCGAACGAGGTACTAA
* *
37227263 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATT
* *
37227277 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTCGAACG-GGTAGC
1 CCGAAGGCATTTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTCGAACGAGGTA-C
*
37227340 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATT
37227356 CCGAAGG
1 CCGAAGG
37227363 TACGTGATTC
Statistics
Matches: 137, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
78 42 0.31
79 73 0.53
80 22 0.16
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTCGAACGAGGTACTAA
ATCCGGGTTAAATT
Found at i:37235411 original size:40 final size:39
Alignment explanation
Indices: 37235253--37235474 Score: 272
Period size: 39 Copynumber: 5.6 Consensus size: 39
37235243 CGAATGATGA
* *
37235253 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
37235292 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
37235331 CCGGACTAAGAT-CCGAAGGTATTTGTACGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
37235370 CCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
37235410 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
*
37235450 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37235475 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 94 0.58
40 68 0.42
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:37235496 original size:79 final size:77
Alignment explanation
Indices: 37235259--37235507 Score: 247
Period size: 79 Copynumber: 3.2 Consensus size: 77
37235249 ATGACCGGGC
* * * *
37235259 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAACCGGGCTAAG-TCCCGAAGGCATTTGTGCGA
*
37235322 GTTACTAATCCGGAC
64 GTTACTAATCCGG-T
* * * *
37235337 TAAGAT-CCGAAGGTATTTGTACGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTGGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGA
37235400 GTTACTAAATCCGGGT
64 GTTACT-AATCC-GGT
* **
37235416 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
37235481 -TAGCTATATCCGGT
65 TTA-CTA-ATCCGGT
* *
37235495 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
37235508 TACGTGATTC
Statistics
Matches: 143, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
78 43 0.30
79 74 0.52
80 26 0.18
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
TACTAATCCGGT
Found at i:37242040 original size:22 final size:22
Alignment explanation
Indices: 37242015--37242056 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37242005 TGATGGATGC
*
37242015 GTATTGAGTTA-TAATATGTAAT
1 GTATT-AGTTAGTAAAATGTAAT
37242037 GTATTAGTTAGTAAAATGTA
1 GTATTAGTTAGTAAAATGTA
37242057 TGCCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (22 bp):
GTATTAGTTAGTAAAATGTAAT
Found at i:37242795 original size:40 final size:39
Alignment explanation
Indices: 37242722--37242942 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 39
37242712 CGAATGATGA
*
37242722 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAAT
*
37242762 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
37242801 CCGGACTAAGATCCGAAGGTATTTGTGCGAGTTACT-AAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
37242840 CCCGGGCTAAGCCCGAAGGCATTGGTGCGACTTACTAAAT
1 -CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
*
37242880 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AAT
*
37242920 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGT-CCGAAGGCATT
37242943 CGAACGAGTA
Statistics
Matches: 161, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
39 71 0.44
40 80 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:37242881 original size:79 final size:77
Alignment explanation
Indices: 37242722--37242942 Score: 248
Period size: 79 Copynumber: 2.8 Consensus size: 77
37242712 CGAATGATGA
* * * * * *
37242722 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGACTAAGTCCCGAAGGATTTGTGC-GAGTTACT-AATCCGGGCTAAGACCCGAAGGCATTGG
*
37242787 TGCGAGTTACTAAT
64 TGCGACTTACTAAT
37242801 CCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTG
1 CCGGACTAAG-TCCCGAAGG-ATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGAAGGCATTG
37242864 GTGCGACTTACTAAAT
63 GTGCGACTTACT-AAT
** * * *
37242880 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 CCGGACTAAGTCCCGAAGG-ATTTGTGCGAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
37242943 CGAACGAGTA
Statistics
Matches: 123, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
78 26 0.21
79 76 0.62
80 21 0.17
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGACTAAGTCCCGAAGGATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGGTG
CGACTTACTAAT
Found at i:37242966 original size:79 final size:76
Alignment explanation
Indices: 37242728--37242977 Score: 229
Period size: 79 Copynumber: 3.2 Consensus size: 76
37242718 ATGACCGGGC
* * *
37242728 TAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA-CCGGGCTAAG-TCCCGAAGGCATTCGTGCG
*
37242791 AGTTACTAATCCGGAC
63 AG-TACTAATCCGG-T
* * *
37242807 TAAGAT-CCGAAGGTATTTGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTGGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ACCGGGCTAAGTCCCGAAGGCATTCGTGCGA
*
37242870 CTTACTAAATCCGGGT
64 -GTACT-AATCC-GGT
* **
37242886 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTCGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCATTCGTGCGAG
*
37242951 TAGCTATATCTGGT
65 TA-CTA-ATCCGGT
* *
37242965 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
37242978 TACGTGATTC
Statistics
Matches: 142, Mismatches: 17, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
78 22 0.15
79 88 0.62
80 32 0.23
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (76 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
ACTAATCCGGT
Found at i:37245501 original size:28 final size:28
Alignment explanation
Indices: 37245461--37245532 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
37245451 AAAATTGTAC
* *
37245461 AGCACTAAGTGTGCGAGCTTG-ATTCTAT
1 AGCACTAAGTGTGCGAGC-TGAAATATAT
37245489 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTG-AAATATAT
37245518 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37245533 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:37247572 original size:39 final size:39
Alignment explanation
Indices: 37247509--37247587 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
37247499 TCATATCTTT
* *
37247509 TGAATTATCTTTCATTTTTCTATCATTTAATTTGCATTC
1 TGAACTATCTGTCATTTTTCTATCATTTAATTTGCATTC
*
37247548 TGAACTATCTGTCATTTTTTTATCATTTAATTTGCATTC
1 TGAACTATCTGTCATTTTTCTATCATTTAATTTGCATTC
37247587 T
1 T
37247588 TAGGTTAGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.56
Consensus pattern (39 bp):
TGAACTATCTGTCATTTTTCTATCATTTAATTTGCATTC
Found at i:37250901 original size:30 final size:30
Alignment explanation
Indices: 37250867--37250927 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37250857 TCCTTAACTC
37250867 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
37250897 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
37250927 A
1 A
37250928 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:37253872 original size:124 final size:124
Alignment explanation
Indices: 37253650--37253874 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
37253640 GAATTATGTG
* * * * * * *
37253650 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
37253715 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
37253774 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
37253839 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
37253875 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:37253996 original size:40 final size:40
Alignment explanation
Indices: 37253869--37253998 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
37253859 TTGCTGGAAA
* * *
37253869 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
37253909 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
37253949 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
37253989 TTATATCCGG
1 TTATATCCGG
37253999 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:37259918 original size:48 final size:48
Alignment explanation
Indices: 37259725--37259999 Score: 204
Period size: 48 Copynumber: 5.8 Consensus size: 48
37259715 CATAGTAGGG
* * * * **
37259725 TGCCAATGCCATATCTCAGATATGGTCTTACATGGGGCCACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATCGA
* * * * *
37259773 TGCCAATGCCATGTCCTAGACACGGTCTTACATAGGATCACACA-C-A
1 TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATCGA
* * * * * *
37259819 T-CGAA-GCTGATAG-CCCA-ACTATGGTCTTACACGATG-TACTCATATCGA
1 TGCCAATGC-CAT-GTCCCAGAC-ATGGTCTTATATG-GGAT-CACATATCGA
* *
37259867 TGCCAATGCCATGTCCCAGACATGGTCTGATATGGGATCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATCGA
* * * *
37259915 TGCCAATGCCATGTCCCAAACATGGTATTATATGGGATCATATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATCGA
** * * *
37259963 TGCTGATGCCATATCCCAGATATGGTCTTATACGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGA
37260000 CTCATCAACC
Statistics
Matches: 176, Mismatches: 39, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
44 4 0.02
45 19 0.11
46 8 0.05
47 2 0.01
48 119 0.68
49 20 0.11
50 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATCGA
Found at i:37262697 original size:26 final size:26
Alignment explanation
Indices: 37262659--37262714 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
37262649 CTTATACATA
*
37262659 ACATAAGGTAATAGGGTAATTGTGTC
1 ACATAAGGCAATAGGGTAATTGTGTC
37262685 ACATAAGGCAATAGGGTAATTGTGTC
1 ACATAAGGCAATAGGGTAATTGTGTC
37262711 ACAT
1 ACAT
37262715 CCCAAGTCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (26 bp):
ACATAAGGCAATAGGGTAATTGTGTC
Found at i:37264910 original size:13 final size:13
Alignment explanation
Indices: 37264892--37264920 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37264882 TGTGCCACAG
37264892 ACGGCCAATTGAC
1 ACGGCCAATTGAC
37264905 ACGGCCAATTGAC
1 ACGGCCAATTGAC
37264918 ACG
1 ACG
37264921 CCCGTATGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.14
Consensus pattern (13 bp):
ACGGCCAATTGAC
Found at i:37269595 original size:49 final size:47
Alignment explanation
Indices: 37269404--37269670 Score: 138
Period size: 48 Copynumber: 5.7 Consensus size: 47
37269394 TATGTGAGCT
* * * *
37269404 AGTGTAAGACATGTCTGGGACATG-CATCGGCATTG-AGAGGAGAG-C
1 AGTGTAAGACCTGTCTGGGACATGACATCGGC-TTGAATATGAAAGTC
* * * * * *
37269449 TAGTGTAAGACATGTCTGGGACGTG-CATTAGCCTCAGGATAT-ACAAG-C
1 -AGTGTAAGACCTGTCTGGGACATGACA-TCGGCT-TGAATATGA-AAGTC
* * * * ***
37269497 TAGTGTAAGACTTGTCTAGGACATGGCATCAGCTTG--T-TGTGTGTC
1 -AGTGTAAGACCTGTCTGGGACATGACATCGGCTTGAATATGAAAGTC
37269542 AGTGTAAGACCTGTCTGGGACATGACATCGGCTTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGACATCGGCTT-GA-ATATGAAAGTC
* ** * * * ** *
37269591 AGTGTAAGACCTGTCCGGGACACAACATTGACTTTAATATGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGACATCGGCTTGAATATGAAAGTC
* *
37269638 AGTGTAAGACCATGTCTAGGACATGACGTCGGC
1 AGTGTAAGACC-TGTCTGGGACATGACATCGGC
37269671 ATCTTATCCC
Statistics
Matches: 168, Mismatches: 40, Indels: 24
0.72 0.17 0.10
Matches are distributed among these distances:
44 32 0.19
45 3 0.02
46 26 0.15
47 25 0.15
48 46 0.27
49 36 0.21
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGACATCGGCTTGAATATGAAAGTC
Found at i:37271440 original size:46 final size:48
Alignment explanation
Indices: 37271285--37271549 Score: 216
Period size: 47 Copynumber: 5.6 Consensus size: 48
37271275 GGTAAGGTGC
* *
37271285 CGATGCCATGTCCTAGACATGGTCTTACACTGG-TTCATATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-ACATCTCGAAGT
* * * *
37271332 CGATGCCATGTCCCAGACATGGTCTTACATTGACTAATCATCTC-ATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCGA-AGT
* * *
37271381 CGATG-CATGTCCCATACAT-GTCTTACACTGGCTTACGTCTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAAGT
* **
37271427 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-TGTCTCG-A-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAAGT
* ** *
37271471 ACGAATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGC
1 -CG-ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAAGT
37271521 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
37271550 AGCCCACAAA
Statistics
Matches: 183, Mismatches: 23, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 56 0.31
47 74 0.40
48 40 0.22
49 10 0.05
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAAGT
Found at i:37271498 original size:94 final size:94
Alignment explanation
Indices: 37271284--37271552 Score: 286
Period size: 94 Copynumber: 2.9 Consensus size: 94
37271274 GGGTAAGGTG
* * *
37271284 CCGATGCCATGTCCTAGACATGGTCTTACACTGG-TTCATATCTC-AAGTCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-ACATCTCGAGGTCGATG-CATGTCCCA
*
37271347 GACATGGTCTTACA-TTGACTAATCATCTCATA
64 GACAT-GTCTTACACTAG-CTAATCATCTCATA
* *
37271379 GCCGATG-CATGTCCCATACAT-GTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTCGATGCATGTCCCAG
* **
37271442 ACATGTCTTACACTAGCT-CTTGTCTCGATA
65 ACATGTCTTACACTAGCTAATCATCTC-ATA
* * *
37271472 -CGAATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCC
1 CCG-ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGTCGATGCATGTCCC
37271534 AGACATGTCTTACACTAGC
63 AGACATGTCTTACACTAGC
37271553 CCACAAACAA
Statistics
Matches: 150, Mismatches: 14, Indels: 20
0.82 0.08 0.11
Matches are distributed among these distances:
91 2 0.01
92 8 0.05
93 26 0.17
94 84 0.56
95 24 0.16
96 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTCGATGCATGTCCCAGA
CATGTCTTACACTAGCTAATCATCTCATA
Found at i:37278572 original size:27 final size:26
Alignment explanation
Indices: 37278541--37278598 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
37278531 TTTCTAAAAT
*
37278541 TACCCCTAAGTATG-AAAATTACCGTTA
1 TACCCCT-AG-ATGCAAAATTACCATTA
*
37278568 TACCCCTAGGTGCAAAATTACCATTA
1 TACCCCTAGATGCAAAATTACCATTA
37278594 TACCC
1 TACCC
37278599 TAGGGTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 2 0.07
26 19 0.68
27 7 0.25
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (26 bp):
TACCCCTAGATGCAAAATTACCATTA
Found at i:37278760 original size:26 final size:27
Alignment explanation
Indices: 37278704--37278762 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
37278694 GGAGGAAGCG
* *
37278704 TTCTGGTGGCTCTGCCACAAATATTTG
1 TTCTGGTGGCTCTGCCACAAATATCTA
*
37278731 TTCTGGTGGCTTTGCCAC-AATATCTA
1 TTCTGGTGGCTCTGCCACAAATATCTA
37278757 TTCTGG
1 TTCTGG
37278763 CAGCCATGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 12 0.41
27 17 0.59
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTA
Found at i:37286605 original size:27 final size:27
Alignment explanation
Indices: 37286567--37286676 Score: 159
Period size: 27 Copynumber: 4.1 Consensus size: 27
37286557 ATGGAGGAAG
* *
37286567 TGTTTTGGTGGCTCTGCTACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
*
37286594 TGTTCTGGTGGCTCTACCACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
* * *
37286621 TGTTCTGGTGGGTTTGCCACAAACATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
37286648 TGTTCTGGTGGCTCTGCCAC-AATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
37286674 TGT
1 TGT
37286677 ATCTAGTCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 8 0.11
27 65 0.89
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TGTTCTGGTGGCTCTGCCACAAATATC
Found at i:37286696 original size:54 final size:54
Alignment explanation
Indices: 37286585--37286696 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
37286575 TGGCTCTGCT
* * ***
37286585 ACAAATATCTGTTCTGGTGGCTCTACCACAAATATCTGTTCTGGTGGGTTTGCC
1 ACAAACATCTGTTCTGGTGGCTCTACCACAAATATCTGTTCTAGTCACTTTGCC
* *
37286639 ACAAACATCTGTTCTGGTGGCTCTGCCAC-AATATCTGTATCTAGTCACTTTGTC
1 ACAAACATCTGTTCTGGTGGCTCTACCACAAATATCTGT-TCTAGTCACTTTGCC
37286693 ACAA
1 ACAA
37286697 TATTTGTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 9 0.18
54 41 0.82
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (54 bp):
ACAAACATCTGTTCTGGTGGCTCTACCACAAATATCTGTTCTAGTCACTTTGCC
Found at i:37289848 original size:46 final size:45
Alignment explanation
Indices: 37289708--37289965 Score: 202
Period size: 47 Copynumber: 5.5 Consensus size: 45
37289698 ATGCTGAGGC
* * *
37289708 CATGTCCCAGACATGGTCTTACACTGG-TTCATATCTC-AAGTCGATTT
1 CATGTCCCAGACAT-GTCTTACACTGGTTTC--ATCTCGAGGCCGA-TG
* * *
37289755 CATGTCCCAGACATGGTCTTACACTGACTATT-ATCTTGTA-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTG-GT-TTCATCTCG-AGGCCGATG
* *
37289802 CATGTCCCATACATGTCTTACACTGGTTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGTTT-CATCTCGAGGCCGATG
* * * **
37289848 CATGTCCTAGACATGTCTTACACTAGCTTTCATCTCAATACCGATG
1 CATGTCCCAGACATGTCTTACACT-GGTTTCATCTCGAGGCCGATG
* * * *
37289894 TCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATA
1 -CATGTCCCAGACAT-GTCTTACACTGG-TTTCAT-CTCGAGGCCGATG
37289942 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
37289966 AGCCCACAAA
Statistics
Matches: 172, Mismatches: 26, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 65 0.38
47 76 0.44
48 23 0.13
49 2 0.01
50 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGTTTCATCTCGAGGCCGATG
Found at i:37295467 original size:10 final size:10
Alignment explanation
Indices: 37295452--37295481 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
37295442 AATAAAAAGG
37295452 CATATTATAA
1 CATATTATAA
37295462 CATATTATAA
1 CATATTATAA
*
37295472 CATATAATAA
1 CATATTATAA
37295482 AATCATTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
CATATTATAA
Found at i:37297711 original size:12 final size:12
Alignment explanation
Indices: 37297694--37297727 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
37297684 CGACTACTTG
* *
37297694 ATATATTTATAC
1 ATATATATATAA
37297706 ATATATATATAA
1 ATATATATATAA
37297718 ATATATATAT
1 ATATATATAT
37297728 TATGTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATATATATAA
Found at i:37300565 original size:29 final size:29
Alignment explanation
Indices: 37300531--37300633 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
37300521 TAATCAGCCG
** *
37300531 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
37300560 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
37300589 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
37300618 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
37300634 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:37308647 original size:29 final size:29
Alignment explanation
Indices: 37308613--37308715 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
37308603 TAATCAGCCG
** *
37308613 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
37308642 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
37308671 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
37308700 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
37308716 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:37312332 original size:24 final size:24
Alignment explanation
Indices: 37312296--37312347 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
37312286 AATGAATCGG
* *
37312296 AAAAAGCTGAAATACCAAAAAGCT
1 AAAAAGCTAAAATACCAAAAAGCC
* *
37312320 AAAAAGCTAAAATGCCGAAAAGCC
1 AAAAAGCTAAAATACCAAAAAGCC
37312344 AAAA
1 AAAA
37312348 GTTGGGCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.60, C:0.17, G:0.13, T:0.10
Consensus pattern (24 bp):
AAAAAGCTAAAATACCAAAAAGCC
Found at i:37312618 original size:29 final size:29
Alignment explanation
Indices: 37312553--37312625 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
37312543 GCATGAGTAT
* **
37312553 AATATGATTTGGGCCTAATGGGCCATATT
1 AATATGAATTGGGCCTAATGGGCCATAAG
** *
37312582 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAATGGGCCATAAG
*
37312611 AATATGAACTGGGCC
1 AATATGAATTGGGCC
37312626 ATTTGAATAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGGCCATAAG
Found at i:37317595 original size:10 final size:10
Alignment explanation
Indices: 37317580--37317609 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
37317570 AATAAAAAGG
37317580 CATATTATAA
1 CATATTATAA
37317590 CATATTATAA
1 CATATTATAA
*
37317600 CATATAATAA
1 CATATTATAA
37317610 AATCATTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
CATATTATAA
Found at i:37318823 original size:45 final size:45
Alignment explanation
Indices: 37318759--37318893 Score: 252
Period size: 45 Copynumber: 3.0 Consensus size: 45
37318749 ATAATTTCCG
* *
37318759 CTTGAAGATGAGTAATTTAAGTTTTATTAAAGTGGTTTTTAACTA
1 CTTGAAGATGGGTAATTTAATTTTTATTAAAGTGGTTTTTAACTA
37318804 CTTGAAGATGGGTAATTTAATTTTTATTAAAGTGGTTTTTAACTA
1 CTTGAAGATGGGTAATTTAATTTTTATTAAAGTGGTTTTTAACTA
37318849 CTTGAAGATGGGTAATTTAATTTTTATTAAAGTGGTTTTTAACTA
1 CTTGAAGATGGGTAATTTAATTTTTATTAAAGTGGTTTTTAACTA
37318894 TGTGTATATA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.46
Consensus pattern (45 bp):
CTTGAAGATGGGTAATTTAATTTTTATTAAAGTGGTTTTTAACTA
Found at i:37324130 original size:27 final size:27
Alignment explanation
Indices: 37324086--37324374 Score: 85
Period size: 27 Copynumber: 10.7 Consensus size: 27
37324076 TATTGAAATG
* *
37324086 CCCTCGACTTGTAAAATTACCAAAGTA
1 CCCTCGATTTATAAAATTACCAAAGTA
* * ***
37324113 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGATTTATAAAATTACCAAAGTA
* ***
37324140 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCAAAGTA
* * ***
37324167 CCCTC-AGTTTACAAAATTACTATTTTA
1 CCCTCGA-TTTATAAAATTACCAAAGTA
* * *
37324194 CCCTCGA-TTGTGAAATTACTGAAA-TA
1 CCCTCGATTTATAAAATTAC-CAAAGTA
** * *
37324220 CCC-CTG-TAGAATAGAATTACCAAAATA
1 CCCTC-GAT-TTATAAAATTACCAAAGTA
* * *
37324247 CCC-CTAGTTTGTAAAATTACCAAAATA
1 CCCTCGA-TTTATAAAATTACCAAAGTA
* *
37324274 CCGCT-AATTTGTAAAATTACCGAAA-TA
1 CC-CTCGATTTATAAAATTACC-AAAGTA
* * * *
37324301 CCACT-GGTTTGTGAAATTACTGAAA-TA
1 CC-CTCGATTTATAAAATTAC-CAAAGTA
* * *
37324328 CCCTCAATTTGTAAAATTACCAAAATA
1 CCCTCGATTTATAAAATTACCAAAGTA
** *
37324355 CCCTTAATTTACAAAATTAC
1 CCCTCGATTTATAAAATTAC
37324375 AGAAATACCC
Statistics
Matches: 206, Mismatches: 41, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.00
26 24 0.12
27 174 0.84
28 7 0.03
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCAAAGTA
Found at i:37324144 original size:54 final size:53
Alignment explanation
Indices: 37324086--37324212 Score: 134
Period size: 54 Copynumber: 2.4 Consensus size: 53
37324076 TATTGAAATG
* *
37324086 CCCTCGACTTGTAAAATTACCAAAGTACCCTC-GATTTATAGAATTA-TCATTTTA
1 CCCTCGA-TTGTAAAATTACCAAAGTACCCTCAG-TTTACAAAATTACT-ATTTTA
***
37324140 CCCTCGATT-TACAAAATTACCATTTTACCCTCAGTTTACAAAATTACTATTTTA
1 CCCTCGATTGT--AAAATTACCAAAGTACCCTCAGTTTACAAAATTACTATTTTA
*
37324194 CCCTCGATTGTGAAATTAC
1 CCCTCGATTGTAAAATTAC
37324213 TGAAATACCC
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
52 1 0.02
53 9 0.15
54 49 0.79
55 3 0.05
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (53 bp):
CCCTCGATTGTAAAATTACCAAAGTACCCTCAGTTTACAAAATTACTATTTTA
Found at i:37324292 original size:54 final size:54
Alignment explanation
Indices: 37324234--37324385 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 54
37324224 TGTAGAATAG
37324234 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCGCT-AATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTCAATTTGTAA
* * * * **
37324288 AATTACCGAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
* * **
37324342 AATTACCAAAATACCCTTAATTTACAAAATTA-CAGAAATACCCT
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCCT
37324386 TGACTTTTTA
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 2 0.03
54 78 0.98
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
Found at i:37324380 original size:27 final size:27
Alignment explanation
Indices: 37324314--37324442 Score: 118
Period size: 27 Copynumber: 4.7 Consensus size: 27
37324304 CTGGTTTGTG
* * **
37324314 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACAGAAATACCCTTAATTTACA
37324341 AAATTACCA-AAATACCCTTAATTTACA
1 AAATTA-CAGAAATACCCTTAATTTACA
*
37324368 AAATTACAGAAATACCCTTGACTTTTTA-A
1 AAATTACAGAAATACCCTT-A--ATTTACA
* * **
37324397 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCTTAATTTACA
*
37324424 AAATTACTGAAATACCCTT
1 AAATTACAGAAATACCCTT
37324443 GGTTTGTAGA
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
26 6 0.07
27 54 0.64
28 2 0.02
29 18 0.21
30 4 0.05
ACGTcount: A:0.43, C:0.18, G:0.06, T:0.33
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTAATTTACA
Found at i:37324438 original size:110 final size:108
Alignment explanation
Indices: 37324234--37324469 Score: 260
Period size: 110 Copynumber: 2.2 Consensus size: 108
37324224 TGTAGAATAG
* * ** *
37324234 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCGCTAATTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCTTAATTTACAAAATTACCAAAATACCGCTAATTTGTAAAATTACAGAAA
***
37324299 TACCACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGTAA
66 TACCACTGGTTTACAAAATTACTGAAATACCCTCAATTTGTAA
* * *
37324342 AATTACCAAAATACCCTTAATTTACAAAATTA-CAGAAATACC-CTTGACTTTTTAAAAATTATA
1 AATTACCAAAATACCCTTAATTTACAAAATTACCA-AAATACCGC-T-AATTTGT-AAAATTACA
* *** *
37324405 GAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAG
62 GAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAATTTGTAA
* *
37324452 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
37324470 GTAGGATGAA
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
107 3 0.03
108 36 0.34
109 5 0.05
110 62 0.58
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (108 bp):
AATTACCAAAATACCCTTAATTTACAAAATTACCAAAATACCGCTAATTTGTAAAATTACAGAAA
TACCACTGGTTTACAAAATTACTGAAATACCCTCAATTTGTAA
Found at i:37324444 original size:27 final size:27
Alignment explanation
Indices: 37324286--37324447 Score: 114
Period size: 27 Copynumber: 5.9 Consensus size: 27
37324276 GCTAATTTGT
* **
37324286 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* *** **
37324313 GAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
** **
37324340 AAAATTACCAAAATACCCTTAATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
37324367 AAAATTACAGAAATACCCTTGACTTTTTA-
1 AAAATTACTGAAATACCCTTG---GTTTAC
*
37324396 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCCTTGGTTTAC
37324423 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
37324448 GTAGATTTAC
Statistics
Matches: 109, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
26 5 0.05
27 81 0.74
28 1 0.01
29 18 0.17
30 4 0.04
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:37325456 original size:24 final size:24
Alignment explanation
Indices: 37325374--37325457 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
37325364 AGGAAATGCT
* * *
37325374 AAAAGGGCTCTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
37325398 GAAAAGGGTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
37325423 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
37325447 AAAAGAGGCTT
1 AAAAG-GGCTT
37325458 GGTCTCCAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.22
25 36 0.71
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:37325650 original size:42 final size:42
Alignment explanation
Indices: 37325591--37325682 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
37325581 TAGTCTCCCC
*
37325591 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37325633 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37325675 AAATGGGC
1 AAATGGGC
37325683 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:37325741 original size:31 final size:31
Alignment explanation
Indices: 37325706--37325906 Score: 330
Period size: 31 Copynumber: 6.5 Consensus size: 31
37325696 CGTTTACAGT
37325706 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
37325737 AAAGGTTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
37325768 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
37325799 AAAGGCTTAGTCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
37325830 AAAGGCTTCAGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
37325861 AAAGGCTTCGGCTCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
37325892 AAAGGCTTCGACCCA
1 AAAGGCTTCGGCCCA
37325907 ATATATGTCA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 156 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:37338392 original size:10 final size:10
Alignment explanation
Indices: 37338377--37338406 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
37338367 AATAAAAAGG
37338377 CATATTATAA
1 CATATTATAA
37338387 CATATTATAA
1 CATATTATAA
*
37338397 CATATAATAA
1 CATATTATAA
37338407 AATCATTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
CATATTATAA
Found at i:37341053 original size:2 final size:2
Alignment explanation
Indices: 37341046--37341073 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37341036 GTTTGGATGA
37341046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37341074 GCATTCGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37342307 original size:47 final size:47
Alignment explanation
Indices: 37342238--37342439 Score: 277
Period size: 47 Copynumber: 4.3 Consensus size: 47
37342228 AGCTTAAGAT
37342238 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
*
37342285 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTTATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** *
37342332 CGAATGGCCAATGTGATGAAT-TGAAAGTGCATACATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
37342378 CGAATGGTTAATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
37342423 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
37342440 AAAGTGTGCA
Statistics
Matches: 137, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
45 23 0.17
46 43 0.31
47 71 0.52
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:37342401 original size:93 final size:92
Alignment explanation
Indices: 37342238--37342439 Score: 273
Period size: 93 Copynumber: 2.2 Consensus size: 92
37342228 AGCTTAAGAT
** *
37342238 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATG
1 CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37342303 AATGTGAAAGTGTGTATATGTTATAAGGC
66 AATGTGAAA--GTGAATATGTGATAAGGC
**
37342332 CGAATGGCCAATGTGATGAAT-TGAAAGTGCATACATGTGATAAGGCCGAATGGTTAATGTGAT-
1 CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGTGATAAGGCCGAATGGCCAATGTGATG
*
37342395 ATATGTGTAAGTGAATATGTGATAAGGC
66 A-ATGTGAAAGTGAATATGTGATAAGGC
*
37342423 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
37342440 AAAGTGTGCA
Statistics
Matches: 97, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
91 26 0.27
92 6 0.06
93 44 0.45
94 21 0.22
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (92 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAAAGTGAATATGTGATAAGGC
Found at i:37342564 original size:39 final size:40
Alignment explanation
Indices: 37342510--37342594 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
37342500 AAATGAATTG
* * * *
37342510 TGCTGAGATTGTATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
*
37342549 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
37342589 TGCTGG
1 TGCTGG
37342595 TGAATTAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 18 0.45
40 22 0.55
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (40 bp):
TGCTGGGATTGTATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:37343247 original size:2 final size:2
Alignment explanation
Indices: 37343240--37343264 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37343230 AATTAAGTTT
37343240 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
37343265 TCATGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37345639 original size:29 final size:29
Alignment explanation
Indices: 37345603--37345765 Score: 193
Period size: 29 Copynumber: 5.6 Consensus size: 29
37345593 AATAAACGAT
***
37345603 CTCGCACACTTAGTGCCATGCGATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
37345632 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* *
37345661 TTTGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
37345690 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* * ** *
37345719 TTTGCACACTTAGTGCCATA-CCTTCCAAG
1 CTCGCACACTTAGTGCCATATAATT-TAAG
*
37345748 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
37345766 ACCTTGTCAC
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
28 2 0.02
29 116 0.98
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATATAATTTAAG
Found at i:37345678 original size:58 final size:58
Alignment explanation
Indices: 37345606--37345765 Score: 223
Period size: 58 Copynumber: 2.8 Consensus size: 58
37345596 AAACGATCTC
* *
37345606 GCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTT
1 GCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTT
* * *
37345664 GCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTT
1 GCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTT
* * * *
37345722 GCACACTTAGTGCCATAC-CTTCCAAGCCCGCACACTTAGTGCCA
1 GCACACTTAGTGCCATACAATT-TAAGCTCGCACACATAGTGCCA
37345766 ACCTTGTCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
57 2 0.02
58 89 0.98
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (58 bp):
GCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTT
Found at i:37349973 original size:19 final size:20
Alignment explanation
Indices: 37349936--37349973 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
37349926 ATAAGGTGGT
37349936 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
37349956 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
37349974 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:37351375 original size:2 final size:2
Alignment explanation
Indices: 37351368--37351451 Score: 100
Period size: 2 Copynumber: 43.0 Consensus size: 2
37351358 GCACTACTTG
* * *
37351368 AT AT AT AT AT AT AC AT AT AT AT AT AT AT GT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
37351410 AT GT AT AT AT AC AT AT AT AT AT AT AT AT AT -T GT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37351450 AT
1 AT
37351452 GTTAAGATCA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
1 2 0.03
2 67 0.97
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37358453 original size:50 final size:48
Alignment explanation
Indices: 37358341--37358673 Score: 558
Period size: 48 Copynumber: 6.9 Consensus size: 48
37358331 CAAGATAAAT
*
37358341 ATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
37358389 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
37358439 ATATGTATTTGTGGTAAAGTCGAATGGCTAATGTGAAATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
37358489 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
37358537 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
37358585 ATATGTATATGTGGTAAAACCGAATGGCTAGTTTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
37358633 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
37358674 ATATAAAGTC
Statistics
Matches: 272, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 176 0.65
49 4 0.01
50 92 0.34
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:37358681 original size:30 final size:30
Alignment explanation
Indices: 37358647--37358703 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
37358637 GTATATGTGG
37358647 TAAAGCCGAATGGCTACTGTGAAATATATA
1 TAAAGCCGAATGGCTACTGTGAAATATATA
* *
37358677 TAAAGTCGAATGGCTAGTGTGAAATAT
1 TAAAGCCGAATGGCTACTGTGAAATAT
37358704 GTATGAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.28
Consensus pattern (30 bp):
TAAAGCCGAATGGCTACTGTGAAATATATA
Found at i:37358694 original size:78 final size:78
Alignment explanation
Indices: 37358605--37358751 Score: 276
Period size: 78 Copynumber: 1.9 Consensus size: 78
37358595 GTGGTAAAAC
*
37358605 CGAATGGCTAGTTTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAA
1 CGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAA
37358670 ATATATATAAAGT
66 ATATATATAAAGT
*
37358683 CGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 CGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAA
37358748 ATAT
66 ATAT
37358752 GTATGAGATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 67 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (78 bp):
CGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAA
ATATATATAAAGT
Found at i:37358739 original size:48 final size:48
Alignment explanation
Indices: 37358677--37358962 Score: 423
Period size: 48 Copynumber: 6.1 Consensus size: 48
37358667 GAAATATATA
*
37358677 TAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
37358725 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
* *
37358773 TAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAGATATGTATATGTGG
37358823 TAAAGCCGAATGGCTAGTGTG-AA-A--TAT--G-TA--TATA--TGG
1 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
37358860 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
* * *
37358908 TAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTACATGTGG
1 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
37358956 TAAAGCC
1 TAAAGCC
37358963 CGGTAATGCC
Statistics
Matches: 217, Mismatches: 8, Indels: 26
0.86 0.03 0.10
Matches are distributed among these distances:
37 24 0.11
38 2 0.01
39 5 0.02
41 5 0.02
42 1 0.00
43 1 0.00
44 5 0.02
46 5 0.02
47 1 0.00
48 122 0.56
49 2 0.01
50 44 0.20
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGG
Found at i:37358776 original size:126 final size:126
Alignment explanation
Indices: 37358551--37358934 Score: 536
Period size: 126 Copynumber: 3.0 Consensus size: 126
37358541 GTATATGTGG
* *
37358551 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAACCGAATGGCTAG
1 TAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
* *
37358616 TTTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATATA
66 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
37358677 TAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
1 TAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
37358742 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
66 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
* * * ** * * * * *
37358803 TATGAGATATGTATATGTGGTAAAGCCG-AATGGCTAGTGTGAAATATGTATATATGGTAAAGCC
1 TA-AAG-T-CG-A-ATG-GCTAGTG-TGAAAT--AT-GTATGAGATATGTATATGTGGTAAAGCC
*
37358867 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAA
56 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
37358932 TAT
121 TAT
37358935 GTATGAGATA
Statistics
Matches: 233, Mismatches: 15, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
126 124 0.53
127 2 0.01
128 1 0.00
129 1 0.00
130 1 0.00
131 3 0.01
132 7 0.03
133 1 0.00
134 1 0.00
135 92 0.39
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (126 bp):
TAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
Found at i:37358799 original size:174 final size:180
Alignment explanation
Indices: 37358341--37358962 Score: 887
Period size: 174 Copynumber: 3.4 Consensus size: 180
37358331 CAAGATAAAT
* *
37358341 ATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * *
37358406 AGCCGAATGGCTAATGTGAAATATATGTATGAGATATGTATTTGTGGTAAAGTCGAATGGCTAAT
66 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTACT
*
37358471 GTGAAATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
131 GTG----A-A---AT-AG-TA--TATA----GTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
37358536 G
180 G
37358537 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * *
37358602 AACCGAATGGCTAGTTTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACT
66 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTACT
*
37358665 GTG-AA-A-TATATA-TAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
131 GTGAAATAGTATATAGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
37358711 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
37358776 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
66 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTACT
37358841 GTGAAATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
131 GTGAAATA-GTATATA--GTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
37358894 ATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTACATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
37358959 AGCC
66 AGCC
37358963 CGGTAATGCC
Statistics
Matches: 398, Mismatches: 19, Indels: 31
0.89 0.04 0.07
Matches are distributed among these distances:
174 112 0.28
175 2 0.01
176 44 0.11
177 2 0.01
178 1 0.00
179 4 0.01
180 6 0.02
181 2 0.01
183 100 0.25
185 1 0.00
188 1 0.00
194 43 0.11
195 2 0.01
196 78 0.20
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (180 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTACT
GTGAAATAGTATATAGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:37358861 original size:37 final size:37
Alignment explanation
Indices: 37358809--37358890 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
37358799 TATATATGAG
*
37358809 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAA
37358846 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAA
37358883 ATATGTAT
1 ATATGTAT
37358891 GAGATATGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (37 bp):
ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAA
Found at i:37358867 original size:135 final size:133
Alignment explanation
Indices: 37358711--37358962 Score: 450
Period size: 135 Copynumber: 1.9 Consensus size: 133
37358701 TATGTATGAG
*
37358711 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
37358776 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
66 AGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTACATGTGGTAAAGCCGAATGGCTAGT
37358841 GTGAA
129 GTGAA
37358846 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
37358911 AGCTGAATGGCTAATGTGAAATATGTATGAGATATGTACATGTGGTAAAGCC
66 AGCCGAATGGCTAATGTGAAATATATATGAGATATGTACATGTGGTAAAGCC
37358963 CGGTAATGCC
Statistics
Matches: 113, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
133 30 0.27
134 2 0.02
135 81 0.72
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (133 bp):
ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATATGAGATATGTACATGTGGTAAAGCCGAATGGCTAGTGT
GAA
Found at i:37358929 original size:85 final size:87
Alignment explanation
Indices: 37358759--37358938 Score: 301
Period size: 85 Copynumber: 2.1 Consensus size: 87
37358749 TATGTATGAG
*
37358759 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
*
37358824 AAAGCCGAATGGCTAGTGTGAA
66 AAAGCCGAATGGCTAATGTGAA
* *
37358846 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAGATATGTATATGTGGT
1 ATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
*
37358909 AAAGCTGAATGGCTAATGTGAA
66 AAAGCCGAATGGCTAATGTGAA
37358931 ATATGTAT
1 ATATGTAT
37358939 GAGATATGTA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
85 53 0.60
86 2 0.02
87 33 0.38
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (87 bp):
ATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAA
Found at i:37359530 original size:40 final size:40
Alignment explanation
Indices: 37359478--37359589 Score: 224
Period size: 40 Copynumber: 2.8 Consensus size: 40
37359468 AGCTATATAC
37359478 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
37359518 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
37359558 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
37359590 AGTGATGTGA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:37361361 original size:29 final size:28
Alignment explanation
Indices: 37361259--37361362 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
37361249 GTGACAAGAT
*
37361259 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* *
37361288 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
37361317 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
37361346 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
37361363 AATCGATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:37369403 original size:29 final size:28
Alignment explanation
Indices: 37369301--37369404 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
37369291 GTGACAAGAT
*
37369301 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* *
37369330 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
37369359 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
37369388 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
37369405 AATCGATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:37370944 original size:40 final size:40
Alignment explanation
Indices: 37370884--37370999 Score: 187
Period size: 40 Copynumber: 2.9 Consensus size: 40
37370874 CAAGTGATGT
37370884 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
*
37370924 ATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* * * *
37370964 ATCCGGGCTAAGTCCTGAGGGGCATTCGTGCCGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
37371000 ATGTGTAATC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
Found at i:37371202 original size:25 final size:25
Alignment explanation
Indices: 37371163--37371217 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
37371153 TGTGTAATGA
37371163 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
* *
37371188 TGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
37371213 CGAAT
1 CGAAT
37371218 TCTTTAACCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:37372500 original size:19 final size:21
Alignment explanation
Indices: 37372476--37372516 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
37372466 AAGGGAGAAT
37372476 AAAG-AAATG-GAAAAAAAAA
1 AAAGAAAATGAGAAAAAAAAA
37372495 AAAGAAAATGATGAAAAAAAAA
1 AAAGAAAATGA-GAAAAAAAAA
37372517 TTGGTGTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 5 0.26
22 10 0.53
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (21 bp):
AAAGAAAATGAGAAAAAAAAA
Found at i:37373906 original size:30 final size:29
Alignment explanation
Indices: 37373845--37373947 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
37373835 AAAATTGTAC
* *
37373845 AGCACTAAGTGTGCGAACTGAAAACATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
37373874 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
37373904 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
37373933 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37373948 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 43 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:37373910 original size:59 final size:59
Alignment explanation
Indices: 37373835--37373947 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 59
37373825 TGCGGGTTTA
*
37373835 AAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCGAGCTG
1 AAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCGAGCTG
* * *
37373894 AAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 AAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCG
37373948 GATTCACTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (59 bp):
AAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATAGCACTAAGTGTGCGAGCTG
Found at i:37378080 original size:48 final size:48
Alignment explanation
Indices: 37378009--37378797 Score: 1355
Period size: 48 Copynumber: 16.3 Consensus size: 48
37377999 CAAGATAAAT
*
37378009 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
37378057 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
37378105 ATATGTATTTGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
*
37378155 ATATGTATTTGTGGTAAAGCCGAATGGCTAGTGTGAAATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
37378205 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
37378253 ATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
37378300 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
37378348 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
37378398 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
37378446 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
37378494 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
37378542 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
37378590 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
37378638 ATATGTATACGTGGTAAAGCCGAATGGCTACTGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
37378686 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
37378734 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
37378782 ATGTGTTATATTGTGG
1 ATATG-TATA-TGTGG
37378798 CCGAATGACC
Statistics
Matches: 715, Mismatches: 19, Indels: 12
0.96 0.03 0.02
Matches are distributed among these distances:
47 46 0.06
48 514 0.72
49 11 0.02
50 144 0.20
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:37378968 original size:37 final size:37
Alignment explanation
Indices: 37378911--37379029 Score: 177
Period size: 37 Copynumber: 3.2 Consensus size: 37
37378901 ACATGAAACT
37378911 TGGAGATATAT-TCCGGGTAAGACCCGATGACTACGTG
1 TGGAGAT-TATGTCCGGGTAAGACCCGATGACTACGTG
*
37378948 TGGAGATTATGTCCGAGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* * * *
37378985 TGGAGATTTTGTCCGGGTAAGACCCAATAACTTCGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
37379022 TGGAGATT
1 TGGAGATT
37379030 TCATCTGAGC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
36 3 0.04
37 72 0.96
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:37380237 original size:26 final size:27
Alignment explanation
Indices: 37380191--37380243 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
37380181 TTACCCTAAT
37380191 CGTTTCACTTCTTTTCTAACTTTTTTTC
1 CGTTTCACTTC-TTTCTAACTTTTTTTC
37380219 CGTTTCATCTTC-TTC-AACTTTTTTT
1 CGTTTCA-CTTCTTTCTAACTTTTTTT
37380244 TTTTATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 10 0.42
27 3 0.12
28 7 0.29
29 4 0.17
ACGTcount: A:0.11, C:0.25, G:0.04, T:0.60
Consensus pattern (27 bp):
CGTTTCACTTCTTTCTAACTTTTTTTC
Done.