Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 128 of 770
Found at i:37382329 original size:17 final size:18
Alignment explanation
Indices: 37382307--37382340 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37382297 CACATTGAAG
37382307 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
37382324 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
37382341 CTTCAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:37383447 original size:28 final size:28
Alignment explanation
Indices: 37383374--37383448 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
37383364 TGGCCCCTTT
* * *
37383374 AGGCCCAATCTCATTTAAATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
37383402 -GGCCCCAATCACATTCATATGGCCCATC
1 AGG-CCCAATCACATTCATATGGCCCATC
*
37383430 AGGCCCAATAACATTCATA
1 AGGCCCAATCACATTCATA
37383449 ATCATGCAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.05
28 37 0.90
29 2 0.05
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:37387802 original size:40 final size:40
Alignment explanation
Indices: 37387757--37387924 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
37387747 CGGAATATAA
37387757 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
37387797 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
37387837 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37387877 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
37387917 CCGGATAT
1 CCGGATAT
37387925 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37398700 original size:29 final size:29
Alignment explanation
Indices: 37398667--37398826 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
37398657 GTGACGAGAT
37398667 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
37398696 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
37398725 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
37398754 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
37398783 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
37398812 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37398827 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:37404644 original size:40 final size:40
Alignment explanation
Indices: 37404570--37404715 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
37404560 CCGCACCAAG
* * * * * *
37404570 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
37404610 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
37404650 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
37404690 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
37404716 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:37404730 original size:40 final size:40
Alignment explanation
Indices: 37404602--37404753 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
37404592 ATCACGATTT
* * * * *
37404602 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
37404642 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
37404682 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
37404722 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
37404754 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:37408260 original size:29 final size:28
Alignment explanation
Indices: 37408165--37408264 Score: 182
Period size: 28 Copynumber: 3.5 Consensus size: 28
37408155 GTGACGAGAT
37408165 TGGCACTAAGTGTGCATGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
*
37408193 TGGCACTGAGTGTGCATGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
37408221 TGGCACTAAGTGTGCATGCTGGAAACATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
37408250 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37408265 GAGCTCGAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 51 0.74
29 18 0.26
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:37412314 original size:40 final size:40
Alignment explanation
Indices: 37412269--37412435 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
37412259 CGGAATATAA
37412269 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
37412309 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37412349 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37412389 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37412428 CCGGATAT
1 CCGGATAT
37412436 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37413280 original size:17 final size:19
Alignment explanation
Indices: 37413257--37413302 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
37413247 AAGAAGCATG
37413257 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
37413275 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
37413293 AATCATGCTC
1 AATCATGCTC
37413303 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:37420322 original size:40 final size:40
Alignment explanation
Indices: 37420277--37420443 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
37420267 CGGAATATAA
37420277 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
37420317 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37420357 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37420397 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37420436 CCGGATAT
1 CCGGATAT
37420444 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37421287 original size:17 final size:19
Alignment explanation
Indices: 37421264--37421309 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
37421254 AAGAAGCATG
37421264 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
37421282 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
37421300 AATCATGCTC
1 AATCATGCTC
37421310 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:37423255 original size:46 final size:45
Alignment explanation
Indices: 37423188--37423360 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
37423178 TGGTTGAGCA
*
37423188 TCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGACGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAA-G
* * * * *
37423234 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GAC--GCGAAG
*
37423281 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAA-G
* * *
37423327 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37423361 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 2 0.02
46 61 0.59
47 31 0.30
48 3 0.03
49 2 0.02
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAAG
Found at i:37423344 original size:93 final size:93
Alignment explanation
Indices: 37423185--37423355 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
37423175 GGATGGTTGA
* * *
37423185 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGACGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCGAACTCATTGAGT
37423250 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
37423278 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCGAACTCATTGAGT
*
37423343 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
37423356 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37428887 original size:46 final size:48
Alignment explanation
Indices: 37428729--37428992 Score: 179
Period size: 46 Copynumber: 5.6 Consensus size: 48
37428719 TGATATGTGT
* * * *
37428729 GCTAGTGTAAGACATGTCTGGAACATGCATCGGC-TAC-A-TTATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-CGAGATA-GACAA
* * * * * *
37428775 GCCAGTGTAAGACATGTCTTGGATATGCATC-GACCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGATAGACAA
* * * * * *
37428823 GCCAATATAAGACATGTCTGGGACATGTATCAGCATTGAGA-CGA-AA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATAGACAA
* * *
37428869 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATAGACAA
* * *
37428917 GCTAGTGTAAGACCTGTCTGGGACATGACATC-GACACCGATAGAT-GA-GA
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCAG-CATCG--AGATAGACAA
* *
37428966 GCTAGTGTAAGACCTGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
37428993 GTATCGGCCT
Statistics
Matches: 174, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 65 0.37
47 5 0.03
48 63 0.36
49 35 0.20
50 1 0.01
51 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATAGACAA
Found at i:37428935 original size:48 final size:47
Alignment explanation
Indices: 37428729--37429046 Score: 236
Period size: 48 Copynumber: 6.7 Consensus size: 47
37428719 TGATATGTGT
* * *
37428729 GCTAGTGTAAGACATGTCTGGAACATGCATCGG-CTAC-A-TTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATAT-AAA
* * * * *
37428775 GCCAGTGTAAGACATGTCTTGGATATGCATCGACCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-AA
* * * * * * * **
37428823 GCCAATATAAGACATGTCTGGGACATGTATCAGCATTGAGA-CGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAA
37428869 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-AA
* * * * *
37428917 GCTAGTGTAAGACCTGTCTGGGACATGACATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGGC-CTCGAGATAT-AAA
* * * *
37428966 GCTAGTGTAAGACCTGTTTGGGACATGGTATCGGCCTCGATATATAAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-AAA
* *
37429015 G-TCAG-GTAAGACCTGTCCGGGACATGGCATCG
1 GCT-AGTGTAAGACATGTCTGGGACAT-GCATCG
37429047 ACTTTAATGT
Statistics
Matches: 218, Mismatches: 42, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
46 65 0.30
47 6 0.03
48 89 0.41
49 55 0.25
50 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAA
Found at i:37429024 original size:97 final size:97
Alignment explanation
Indices: 37428769--37429048 Score: 284
Period size: 94 Copynumber: 2.9 Consensus size: 97
37428759 CGGCTACATT
* * * * * * * * *
37428769 ATGAGAGCCAGTGTAAGACATGTCTTGGATATGCATCGACCTCAAGATATACAAGCCAATATAAG
1 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAAGCTAGTGTAAG
* * * **
37428834 ACATGTCTGGGACATG-TATC-AGCATTG--AG
66 ACCTGTCCGGGACATGACATCGA-CACCGATAG
* * *
37428863 ACGAAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAG
1 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAAGCTAGTGTAAG
*
37428928 ACCTGTCTGGGACATGACATCGACACCGATAG
66 ACCTGTCCGGGACATGACATCGACACCGATAG
* * * *
37428960 ATGAGAGCTAGTGTAAGACCTGTTTGGGACATGGTATCGGCCTCGATATATAAAAG-TCAG-GTA
1 ATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATAAAAGCT-AGTGTA
*
37429023 AGACCTGTCCGGGACATGGCATCGAC
64 AGACCTGTCCGGGACATGACATCGAC
37429049 TTTAATGTGC
Statistics
Matches: 157, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
94 70 0.45
95 6 0.04
96 1 0.01
97 58 0.37
98 22 0.14
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (97 bp):
ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAAGCTAGTGTAAG
ACCTGTCCGGGACATGACATCGACACCGATAG
Found at i:37449626 original size:43 final size:43
Alignment explanation
Indices: 37449452--37449624 Score: 185
Period size: 43 Copynumber: 4.0 Consensus size: 43
37449442 ACATAGGATT
* *
37449452 TCGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * *
37449495 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGAGACATTGGCA
1 TCGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCA
37449539 TCG-TATTTGATT-CTGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTAC-GTGTAAGACCAC-GTCTGGGAC-GTTGGCA
* * *
37449581 TTGATATTTGATTACATGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
37449624 T
1 T
37449625 TGTACAAGCT
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 29 0.27
43 42 0.39
44 35 0.33
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:37453912 original size:80 final size:80
Alignment explanation
Indices: 37453828--37453976 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
37453818 TATGGTAACC
* * * *
37453828 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
37453892 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
37453908 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
37453973 CCGG
66 CCGG
37453977 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:37453918 original size:40 final size:38
Alignment explanation
Indices: 37453869--37453976 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
37453859 ATCACGATTT
*
37453869 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
37453909 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
37453949 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
37453977 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:37460308 original size:40 final size:40
Alignment explanation
Indices: 37460253--37460500 Score: 367
Period size: 40 Copynumber: 6.2 Consensus size: 40
37460243 AACATTGGAA
37460253 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37460293 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37460333 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37460373 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-T-
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
37460411 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
37460450 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
37460491 CTATATCCGG
1 ATATATCCGG
37460501 TTAAATCCCG
Statistics
Matches: 189, Mismatches: 16, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
38 35 0.19
39 2 0.01
40 152 0.80
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:37460470 original size:118 final size:120
Alignment explanation
Indices: 37460253--37460500 Score: 367
Period size: 118 Copynumber: 2.1 Consensus size: 120
37460243 AACATTGGAA
37460253 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * * * *
37460318 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
66 CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
37460373 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-T-ATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * *
37460436 CCTTTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
66 CATTCGTGCAAGTTCA-CAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
*
37460491 CTATATCCGG
1 ATATATCCGG
37460501 TTAAATCCCG
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
117 2 0.02
118 76 0.66
119 1 0.01
120 37 0.32
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (120 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCG
Found at i:37468480 original size:40 final size:40
Alignment explanation
Indices: 37468425--37468634 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
37468415 AACATTGGAA
37468425 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37468465 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37468505 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
37468545 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
37468584 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
37468625 CTATATCCGG
1 ATATATCCGG
37468635 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:37473460 original size:46 final size:46
Alignment explanation
Indices: 37473266--37473456 Score: 220
Period size: 46 Copynumber: 4.2 Consensus size: 46
37473256 TTATCTTTGA
* * * * * * * *
37473266 CATGATGCCATAGTGTCTTTCAACTACGATCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
* * * * * * *
37473312 CATGTTACCATGGCAACTTTCAATCATGGTTTTATTCATTTCTTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
*
37473358 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
* *
37473404 CATGTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
37473450 CATGTTG
1 CATGTTG
37473457 TCATCATGTT
Statistics
Matches: 119, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
Found at i:37473535 original size:45 final size:45
Alignment explanation
Indices: 37473476--37473591 Score: 187
Period size: 45 Copynumber: 2.6 Consensus size: 45
37473466 TGCCATGGTA
* * *
37473476 TCTTTCAACCATGGTCTTACACATTTGAATCGTGATGCCATAGCG
1 TCTTTCAGCTATGGTCTTACTCATTTGAATCGTGATGCCATAGCG
*
37473521 TCTTTCAGCTATGGTCTTACTCGTTTGAATCGTGATGCCATAGCG
1 TCTTTCAGCTATGGTCTTACTCATTTGAATCGTGATGCCATAGCG
*
37473566 TCTTTCAGCTATAGTCTTACTCATTT
1 TCTTTCAGCTATGGTCTTACTCATTT
37473592 CTGGTATGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (45 bp):
TCTTTCAGCTATGGTCTTACTCATTTGAATCGTGATGCCATAGCG
Found at i:37476792 original size:20 final size:20
Alignment explanation
Indices: 37476759--37476797 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37476749 TGTTGGAATA
*
37476759 TTTTAATAATAAAATATTTAC
1 TTTTAATAAAAAAAT-TTTAC
37476780 TTTT-ATAAAAAAATTTTA
1 TTTTAATAAAAAAATTTTA
37476798 AGAAGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTAATAAAAAAATTTTAC
Found at i:37479023 original size:26 final size:27
Alignment explanation
Indices: 37478966--37479024 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
37478956 CATAGTTACT
* * *
37478966 TGAATTAGACTGAATAATTAGTTGAAC
1 TGAATTAGACTGAAAAACTAATTGAAC
*
37478993 -CAATTAGACT-AAAAACTAATTGAAC
1 TGAATTAGACTGAAAAACTAATTGAAC
37479018 TGAATTA
1 TGAATTA
37479025 AAAATTGATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.31
Consensus pattern (27 bp):
TGAATTAGACTGAAAAACTAATTGAAC
Found at i:37487579 original size:58 final size:58
Alignment explanation
Indices: 37487509--37487623 Score: 212
Period size: 58 Copynumber: 2.0 Consensus size: 58
37487499 GTGTACATTA
* *
37487509 ACGTATCCCTTAGTGGGTTAGGATGTGTGCTTATGCAAAGAGGAAAGGTTGTGGCATG
1 ACGTATCCCTTAGTGAGTTAGGATGTATGCTTATGCAAAGAGGAAAGGTTGTGGCATG
37487567 ACGTATCCCTTAGTGAGTTAGGATGTATGCTTATGCAAAGAGGAAAGGTTGTGGCAT
1 ACGTATCCCTTAGTGAGTTAGGATGTATGCTTATGCAAAGAGGAAAGGTTGTGGCAT
37487624 ATGCATCTCT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (58 bp):
ACGTATCCCTTAGTGAGTTAGGATGTATGCTTATGCAAAGAGGAAAGGTTGTGGCATG
Found at i:37491779 original size:51 final size:50
Alignment explanation
Indices: 37491711--37491867 Score: 251
Period size: 51 Copynumber: 3.1 Consensus size: 50
37491701 ATCACATTTA
*
37491711 TCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTG
* *
37491762 TCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCATTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTG
* *
37491812 TCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTG
37491863 TCACT
1 TCACT
37491868 GATTAGAAGT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
50 47 0.48
51 51 0.52
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (50 bp):
TCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTG
Found at i:37500098 original size:26 final size:27
Alignment explanation
Indices: 37500052--37500106 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
37500042 TTGAAATAAG
*
37500052 ATAAAATAATTAACTAGTT-AATAATA
1 ATAAAATAATTAACTAATTAAATAATA
*
37500078 ATAAAATAA-TAATTAAATTAAATAATA
1 ATAAAATAATTAACT-AATTAAATAATA
37500105 AT
1 AT
37500107 GGTATTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.16
26 12 0.48
27 9 0.36
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (27 bp):
ATAAAATAATTAACTAATTAAATAATA
Found at i:37501689 original size:28 final size:29
Alignment explanation
Indices: 37501658--37501735 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
37501648 GTATAGGGGT
*
37501658 TTTGTTATATATATAATATA-G-GTGTGGC
1 TTTGTTATATATATAATATATGCATG-GGC
*
37501686 TTTGTTATATATATTATATATGCATGGGC
1 TTTGTTATATATATAATATATGCATGGGC
*
37501715 TTTGTTATATATATATTATAT
1 TTTGTTATATATATAATATAT
37501736 ATATTCATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 19 0.43
29 23 0.52
30 2 0.05
ACGTcount: A:0.29, C:0.04, G:0.15, T:0.51
Consensus pattern (29 bp):
TTTGTTATATATATAATATATGCATGGGC
Found at i:37501725 original size:29 final size:28
Alignment explanation
Indices: 37501635--37501737 Score: 100
Period size: 31 Copynumber: 3.5 Consensus size: 28
37501625 ATATTGTTTC
* *
37501635 ATATAATATATATGTATAGGGGTTTTGTTAT
1 ATATATTATATATG-AT--GGGCTTTGTTAT
* *
37501666 ATATATAATATA-GGTGTGGCTTTGTTAT
1 ATATATTATATATGATG-GGCTTTGTTAT
37501694 ATATATTATATATGCATGGGCTTTGTTATAT
1 ATATATTATATATG-ATGGGCTTTG-T-TAT
37501725 ATATATTATATAT
1 ATATATTATATAT
37501738 ATTCATATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.02
28 21 0.34
29 9 0.15
30 4 0.07
31 26 0.43
ACGTcount: A:0.32, C:0.03, G:0.17, T:0.49
Consensus pattern (28 bp):
ATATATTATATATGATGGGCTTTGTTAT
Found at i:37502035 original size:36 final size:36
Alignment explanation
Indices: 37501988--37502060 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
37501978 TTGTGAACCA
*
37501988 TGTTAACTTGGTGAATTATATTATTATGGCAAACTG
1 TGTTAACTTGGTGAATTATATTAATATGGCAAACTG
* * * *
37502024 TGTTAATTTGGTGACTTGTATTAATATGGCGAACTG
1 TGTTAACTTGGTGAATTATATTAATATGGCAAACTG
37502060 T
1 T
37502061 ATTAGTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.42
Consensus pattern (36 bp):
TGTTAACTTGGTGAATTATATTAATATGGCAAACTG
Found at i:37502061 original size:18 final size:18
Alignment explanation
Indices: 37502006--37502064 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
37501996 TGGTGAATTA
* *
37502006 TATTATTATGGCAAACTG
1 TATTAATATGGCGAACTG
* * *
37502024 TGTTAATTTGGTG-ACTTG
1 TATTAATATGGCGAAC-TG
37502042 TATTAATATGGCGAACTG
1 TATTAATATGGCGAACTG
37502060 TATTA
1 TATTA
37502065 GTTTTCCAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (18 bp):
TATTAATATGGCGAACTG
Found at i:37504670 original size:23 final size:23
Alignment explanation
Indices: 37504644--37504687 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37504634 CAAAGAACCA
* *
37504644 TATTGGGAAGCTCACGAAGAGTC
1 TATTAGGAAGCTCACAAAGAGTC
37504667 TATTAGGAAGCTCACAAAGAG
1 TATTAGGAAGCTCACAAAGAG
37504688 CCATGTAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.20
Consensus pattern (23 bp):
TATTAGGAAGCTCACAAAGAGTC
Found at i:37504726 original size:25 final size:26
Alignment explanation
Indices: 37504671--37504727 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
37504661 AGAGTCTATT
37504671 AGGAAGCTCACAAAGAGCCATGTAAC
1 AGGAAGCTCACAAAGAGCCATGTAAC
* * * *
37504697 GGGAAGCTC-CGAATAGCCATGTACC
1 AGGAAGCTCACAAAGAGCCATGTAAC
37504722 AGGAAG
1 AGGAAG
37504728 TCCAAGCGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.37, C:0.23, G:0.28, T:0.12
Consensus pattern (26 bp):
AGGAAGCTCACAAAGAGCCATGTAAC
Found at i:37514177 original size:18 final size:18
Alignment explanation
Indices: 37514154--37514190 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
37514144 TTCATACAAG
37514154 TAAAATCATGATTAAGTT
1 TAAAATCATGATTAAGTT
37514172 TAAAATCATGATTAAGTT
1 TAAAATCATGATTAAGTT
37514190 T
1 T
37514191 CTGTTGCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (18 bp):
TAAAATCATGATTAAGTT
Found at i:37514437 original size:40 final size:40
Alignment explanation
Indices: 37514381--37514547 Score: 183
Period size: 41 Copynumber: 4.1 Consensus size: 40
37514371 GCAAAAATTG
* *
37514381 TAAAATACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGC
* * * *
37514422 TAAAAACAGAGCAATAGTGGAGTTTTTTGCTAAAATGCCGC
1 TAAAAACAGAGCAATAGCGGCG-CTTTTGCTAAAACGCCGC
** * * *
37514463 TAAAAACAGAGCAATAGCGATGCTTTCGGT-AAACGCCAC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGC
* *
37514502 TAAAAACCAGAGCATTAGCGGCGCTTTTGCTAAAACGTCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGC
37514543 TAAAA
1 TAAAA
37514548 GTCATATAAC
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 13 0.12
40 39 0.38
41 52 0.50
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGCTAAAACGCCGC
Found at i:37514734 original size:14 final size:14
Alignment explanation
Indices: 37514715--37514759 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
37514705 TTAATTATCA
37514715 TTATAGTTTAAGGT
1 TTATAGTTTAAGGT
*
37514729 TTATAGTTTAAGAT
1 TTATAGTTTAAGGT
* *
37514743 ATATGGTTTAAGGT
1 TTATAGTTTAAGGT
37514757 TTA
1 TTA
37514760 AGGTTTAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAAGGT
Found at i:37514757 original size:7 final size:7
Alignment explanation
Indices: 37514720--37514766 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
37514710 TATCATTATA
37514720 GTTTAAG
1 GTTTAAG
37514727 GTTTATA-
1 GTTTA-AG
37514734 GTTTAAG
1 GTTTAAG
* * *
37514741 ATATATG
1 GTTTAAG
37514748 GTTTAAG
1 GTTTAAG
37514755 GTTTAAG
1 GTTTAAG
37514762 GTTTA
1 GTTTA
37514767 GGAGTTAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
6 1 0.03
7 30 0.94
8 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (7 bp):
GTTTAAG
Found at i:37514910 original size:7 final size:7
Alignment explanation
Indices: 37514804--37514911 Score: 58
Period size: 7 Copynumber: 15.1 Consensus size: 7
37514794 GATGAATTAT
37514804 GGGTTTA
1 GGGTTTA
* *
37514811 GAGATTA
1 GGGTTTA
*
37514818 TGGTTTA
1 GGGTTTA
*
37514825 GGATTTA
1 GGGTTTA
37514832 GGG-TTA
1 GGGTTTA
*
37514838 GAGTTTA
1 GGGTTTA
* * *
37514845 AGCTGTAA
1 GGGT-TTA
37514853 GGGTTTA
1 GGGTTTA
*
37514860 TGGTTTA
1 GGGTTTA
37514867 GGGTTTA
1 GGGTTTA
*
37514874 GTGTTTA
1 GGGTTTA
*
37514881 TGGG-ATA
1 -GGGTTTA
*
37514888 GGGGTTAA
1 -GGGTTTA
37514896 GAGGTTTA
1 G-GGTTTA
37514904 GGGTTTA
1 GGGTTTA
37514911 G
1 G
37514912 ATTAATTAGT
Statistics
Matches: 71, Mismatches: 25, Indels: 10
0.67 0.24 0.09
Matches are distributed among these distances:
6 5 0.07
7 53 0.75
8 13 0.18
ACGTcount: A:0.22, C:0.01, G:0.37, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:37521535 original size:22 final size:21
Alignment explanation
Indices: 37521503--37521545 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
37521493 GATTAATATT
*
37521503 TTATATTTAATATTTATAAATA
1 TTATATATAAT-TTTATAAATA
*
37521525 TTATATATAATTTTTTAAATA
1 TTATATATAATTTTATAAATA
37521546 ACAATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTATATATAATTTTATAAATA
Found at i:37526963 original size:40 final size:40
Alignment explanation
Indices: 37526908--37527044 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 40
37526898 TGAATGATAC
* * *
37526908 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
37526948 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* * ** *
37526988 CCGGGCTAA-ACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
*
37527027 CCGGGTTAAGACCCGAAG
1 CCGGGCTAAGACCCGAAG
37527045 TAATTGTGCT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 29 0.35
40 50 0.61
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:37534897 original size:40 final size:40
Alignment explanation
Indices: 37534842--37534989 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
37534832 TTGAATGATA
* * *
37534842 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
37534882 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* * ** *
37534922 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
37534962 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
37534990 TTATGGTTAA
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 91 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:37548688 original size:29 final size:29
Alignment explanation
Indices: 37548616--37548710 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
37548606 TTCGGGCTAG
* * *
37548616 ATGGGCAATATGAACGTGATTTTGGCCGA
1 ATGGGCCATATGAATGTGATTTTGGCCTA
37548645 ATGGGCCATATGAATGTGATTTTGGCCTA
1 ATGGGCCATATGAATGTGATTTTGGCCTA
* *
37548674 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGTGATTTTGGCCTA
*
37548702 GTGGGCCAT
1 ATGGGCCAT
37548711 TGCATGTATG
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 16 0.27
29 44 0.73
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGTGATTTTGGCCTA
Found at i:37550044 original size:18 final size:18
Alignment explanation
Indices: 37550001--37550046 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
37549991 GGATTTTACT
* *
37550001 CAAGGTTTTTATTGTAAA
1 CAAGGTTTTTAGTGAAAA
*
37550019 GAAGGGTTTTTAGTGAAAA
1 CAA-GGTTTTTAGTGAAAA
37550038 CAAGGTTTT
1 CAAGGTTTT
37550047 CGAAAAACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (18 bp):
CAAGGTTTTTAGTGAAAA
Found at i:37556162 original size:50 final size:49
Alignment explanation
Indices: 37556101--37556419 Score: 286
Period size: 50 Copynumber: 6.6 Consensus size: 49
37556091 GCATCAAAAT
* *
37556101 CGATGCTATGTCCCAGACATGGTCTTACACTGTCTCTCATATATCGAGGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-CTCTCATATATCGAGGC
* * *
37556151 CGATGTCATGTCCCAGA-ATGGTCTTACACTGGCTCTCATCTGTCG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATATCGAG-GC
* * * *
37556200 CGATGCCATGTCCTAGACATGGTCTTACACTG---ACACATATC-AAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATATATCGAGGC
* * * *
37556245 CCATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATATCGAGGC
* * * * *
37556295 CGATGCCATGTCCCAGACATGGTCTTAAACTAGCTCTC--ATCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATATCGAGGC
* *
37556343 CGATGCCATGTCCCAGACATGGTCATACAATGGCTCTCATA-AT--ATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATATCGA-GGC
* *
37556391 TGATG-CATGTCCCAGAAAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
37556420 AGCACACTAT
Statistics
Matches: 222, Mismatches: 35, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
45 31 0.14
46 14 0.06
47 14 0.06
48 48 0.22
49 48 0.22
50 67 0.30
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATATATCGAGGC
Found at i:37556305 original size:95 final size:98
Alignment explanation
Indices: 37556157--37556431 Score: 284
Period size: 95 Copynumber: 2.9 Consensus size: 98
37556147 AGGACGATGT
* * * *
37556157 CATGTCCCAGA-ATGGTCTTACACTGGCTCTCATCTGTCGGTGCCGATGCCATGTCCTAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGGTGCCGATGCCATGTCCCAGACATG
*
37556221 GTCTTACACT-G-ACACATATCAA-GCCCATGC
66 GTCTTAAACTAGCACACATATCAATGCCCATGC
* *
37556251 CATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCGAG-GTCGATGCCATGTCCCAGACAT
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCG-GTGCCGATGCCATGTCCCAGACAT
* * * * *
37556315 GGTCTTAAACTAGCTCTCATCTCAATGTCGATGC
65 GGTCTTAAACTAGCACACATATCAATGCCCATGC
* * * * * *
37556349 CATGTCCCAGACATGGTCATACAATGGCTCTCATAATAT--G-GCTGATG-CATGTCCCAGAAAT
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCTCGGTGCCGATGCCATGTCCCAGACAT
*
37556410 -GTCTTACACTAGCACAC-TATCA
65 GGTCTTAAACTAGCACACATATCA
37556432 CCCAAATGTC
Statistics
Matches: 151, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
93 4 0.03
94 25 0.17
95 67 0.44
96 8 0.05
97 8 0.05
98 36 0.24
99 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (98 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGGTGCCGATGCCATGTCCCAGACATG
GTCTTAAACTAGCACACATATCAATGCCCATGC
Found at i:37556414 original size:144 final size:142
Alignment explanation
Indices: 37556101--37556422 Score: 373
Period size: 144 Copynumber: 2.2 Consensus size: 142
37556091 GCATCAAAAT
*
37556101 CGATGCTATGTCCCAGACATGGTCTTACACT-GTCTCTCATATATCGAGGACGATGTCATGTCCC
1 CGATGC-ATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATCGAGGACGATGCCATGTCCC
* * ** * * *
37556165 AGAATGGTCTTACACTGGCTCTCATCTGTCGGTGCCGATGCCATGTCCTAGACATGGTCTTACAC
64 AGAATGGTCTTAAACTAGCTCTCATC-GTCAATGCCGATGCCATGTCCCAGACATGGTCATACAA
37556230 TGACACATATCAAGC
128 TGACACATATCAAGC
* * * *
37556245 CCATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATATCTCGAGGTCGATGCCATGTCCCA
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGACGATGCCATGTCCCA
*
37556310 GACATGGTCTTAAACTAGCTCTCATC-TCAATGTCGATGCCATGTCCCAGACATGGTCATACAAT
65 GA-ATGGTCTTAAACTAGCTCTCATCGTCAATGCCGATGCCATGTCCCAGACATGGTCATACAAT
* * *
37556374 GGCTCTCATAAT-ATGGC
129 -G-ACACAT-ATCA-AGC
* *
37556391 TGATGCATGTCCCAGAAAT-GTCTTACACTAGC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGC
37556423 ACACTATCAC
Statistics
Matches: 152, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
143 32 0.21
144 72 0.47
145 41 0.27
146 7 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (142 bp):
CGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGACGATGCCATGTCCCAG
AATGGTCTTAAACTAGCTCTCATCGTCAATGCCGATGCCATGTCCCAGACATGGTCATACAATGA
CACATATCAAGC
Found at i:37556557 original size:14 final size:14
Alignment explanation
Indices: 37556535--37556569 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
37556525 TTCAAACATT
*
37556535 TCATGCAAAATTAA
1 TCATTCAAAATTAA
37556549 TCATTCAAAATTAA
1 TCATTCAAAATTAA
37556563 TCATTCA
1 TCATTCA
37556570 GTACATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (14 bp):
TCATTCAAAATTAA
Found at i:37561930 original size:29 final size:29
Alignment explanation
Indices: 37561862--37561923 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
37561852 ACTGTTCATG
37561862 TTGAGTAAAATGATGAAATAAGGGTTAAA
1 TTGAGTAAAATGATGAAATAAGGGTTAAA
37561891 TTGAGTAAAATGATGAAATAAGGGTTAAA
1 TTGAGTAAAATGATGAAATAAGGGTTAAA
37561920 TTGA
1 TTGA
37561924 TAGAAATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (29 bp):
TTGAGTAAAATGATGAAATAAGGGTTAAA
Found at i:37563737 original size:46 final size:46
Alignment explanation
Indices: 37563670--37563897 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
37563660 GAGTTGCTCT
37563670 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
37563716 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
37563762 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
37563808 GTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
37563854 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
37563898 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:37565290 original size:12 final size:12
Alignment explanation
Indices: 37565273--37565297 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37565263 GCGAATAAAT
37565273 TGAACCACACGC
1 TGAACCACACGC
37565285 TGAACCACACGC
1 TGAACCACACGC
37565297 T
1 T
37565298 CGTATGGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.40, G:0.16, T:0.12
Consensus pattern (12 bp):
TGAACCACACGC
Found at i:37567635 original size:40 final size:40
Alignment explanation
Indices: 37567586--37567662 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
37567576 TTACAATACC
*
37567586 ACTTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCTAT
1 ACTTAGTGTGTAGGGCTGGATGGGTCGATTTTATCCCTAT
*
37567626 ACTTAGTGTGTAGGGCTGGGTGGGTCGATTTTATCCC
1 ACTTAGTGTGTAGGGCTGGATGGGTCGATTTTATCCC
37567663 CACATGGTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.14, C:0.16, G:0.34, T:0.36
Consensus pattern (40 bp):
ACTTAGTGTGTAGGGCTGGATGGGTCGATTTTATCCCTAT
Found at i:37569814 original size:16 final size:17
Alignment explanation
Indices: 37569795--37569831 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
37569785 ATATGAAGAA
*
37569795 TATTATTTAACA-TTAT
1 TATTATTTAAAATTTAT
37569811 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
37569827 TATTA
1 TATTA
37569832 AAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:37570343 original size:20 final size:21
Alignment explanation
Indices: 37570318--37570365 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
37570308 AACCCAAAAT
*
37570318 CCTAAACCTTGAA-CTCGAAC
1 CCTAAACCTTGAACCTCAAAC
*
37570338 CCTAAACCTTGAACCTCAAAT
1 CCTAAACCTTGAACCTCAAAC
37570359 CCTAAAC
1 CCTAAAC
37570366 TTTAAATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.38, C:0.35, G:0.06, T:0.21
Consensus pattern (21 bp):
CCTAAACCTTGAACCTCAAAC
Found at i:37570399 original size:20 final size:20
Alignment explanation
Indices: 37570380--37570418 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37570370 AATTCAAAAC
37570380 CTAGAACCCA-AACCCTAAA
1 CTAGAACCCATAACCCTAAA
* *
37570399 CTCGAACTCATAACCCTAAA
1 CTAGAACCCATAACCCTAAA
37570419 TATTAAACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.44, C:0.36, G:0.05, T:0.15
Consensus pattern (20 bp):
CTAGAACCCATAACCCTAAA
Found at i:37570461 original size:35 final size:35
Alignment explanation
Indices: 37570416--37570488 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
37570406 TCATAACCCT
* * *
37570416 AAATATTAAACCATAAACTTTAAATCTAGAATCTC
1 AAATATTAAACCATAAACTCTAAATCTAAAATATC
* *
37570451 AAATCTTAAACCCTAAACTCTAAATCTAAAATATC
1 AAATATTAAACCATAAACTCTAAATCTAAAATATC
37570486 AAA
1 AAA
37570489 CCTAGAACCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.29
Consensus pattern (35 bp):
AAATATTAAACCATAAACTCTAAATCTAAAATATC
Found at i:37570489 original size:28 final size:28
Alignment explanation
Indices: 37570436--37570490 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
37570426 CCATAAACTT
* * *
37570436 TAAATCTAGAATCTCAAATCTTAAACCC
1 TAAATCTAGAATCTAAAATATCAAACCC
37570464 TAAACTCTA-AATCTAAAATATCAAACC
1 TAAA-TCTAGAATCTAAAATATCAAACC
37570491 TAGAACCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.47, C:0.24, G:0.02, T:0.27
Consensus pattern (28 bp):
TAAATCTAGAATCTAAAATATCAAACCC
Found at i:37570498 original size:35 final size:34
Alignment explanation
Indices: 37570422--37570508 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 34
37570412 CCCTAAATAT
* * * *
37570422 TAAACCATAAACTTTAAATCTAGAATCTCAAATCT
1 TAAACCCTAAAC-TTAAATCTAAAATATCAAATCC
37570457 TAAACCCTAAACTCTAAATCTAAAATATCAAA-CC
1 TAAACCCTAAACT-TAAATCTAAAATATCAAATCC
*
37570491 TAGAACCCAAAACTTAAA
1 TA-AACCCTAAACTTAAA
37570509 AGCCCAAACC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
34 8 0.18
35 37 0.82
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.25
Consensus pattern (34 bp):
TAAACCCTAAACTTAAATCTAAAATATCAAATCC
Found at i:37570560 original size:21 final size:21
Alignment explanation
Indices: 37570535--37570592 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
37570525 TCGAAACCAT
*
37570535 AACCATAAACCTAAAATCTTA
1 AACCATAAACCTAAAATCTCA
** *
37570556 AACCATAAATTTAGAATCTCA
1 AACCATAAACCTAAAATCTCA
*
37570577 AACCTTAAACCCTAAA
1 AACCATAAA-CCTAAA
37570593 TCATAAGTCC
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.24
Consensus pattern (21 bp):
AACCATAAACCTAAAATCTCA
Found at i:37570627 original size:20 final size:20
Alignment explanation
Indices: 37570604--37570641 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37570594 CATAAGTCCA
*
37570604 AACCTTAAACTCAAACCCAT
1 AACCTTAAACCCAAACCCAT
*
37570624 AACCTTGAACCCAAACCC
1 AACCTTAAACCCAAACCC
37570642 TAAATTCCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.39, G:0.03, T:0.16
Consensus pattern (20 bp):
AACCTTAAACCCAAACCCAT
Found at i:37570669 original size:34 final size:33
Alignment explanation
Indices: 37570601--37570681 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 33
37570591 AATCATAAGT
* * *
37570601 CCAAACCTTAAACTCAAACCCATAACCTTGAAC
1 CCAAACCCTAAATTCAAACCCATAACCGTGAAC
*
37570634 CCAAACCCTAAATTCCAAACTCATAACTCGT-AAC
1 CCAAACCCTAAATT-CAAACCCATAAC-CGTGAAC
*
37570668 CCGAACCCTTAAAT
1 CCAAACCC-TAAAT
37570682 CTTTAACCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 12 0.30
34 21 0.52
35 7 0.17
ACGTcount: A:0.41, C:0.36, G:0.04, T:0.20
Consensus pattern (33 bp):
CCAAACCCTAAATTCAAACCCATAACCGTGAAC
Found at i:37573332 original size:22 final size:22
Alignment explanation
Indices: 37573307--37573350 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37573297 ATGCGAATAA
37573307 TAAAATATATAAAATAT-AAAAT
1 TAAAATAT-TAAAATATCAAAAT
37573329 TAAAATATTAAAATATCAAAAT
1 TAAAATATTAAAATATCAAAAT
37573351 ATTAGAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAAATATTAAAATATCAAAAT
Found at i:37573334 original size:13 final size:14
Alignment explanation
Indices: 37573313--37573352 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
37573303 ATAATAAAAT
37573313 ATATAAAATATAAA
1 ATATAAAATATAAA
37573327 AT-TAAAATATTAAA
1 ATATAAAATA-TAAA
37573341 ATATCAAAATAT
1 ATAT-AAAATAT
37573353 TAGAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 7 0.30
14 8 0.35
15 2 0.09
16 6 0.26
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATAAAATATAAA
Found at i:37573340 original size:8 final size:8
Alignment explanation
Indices: 37573302--37573359 Score: 59
Period size: 8 Copynumber: 7.5 Consensus size: 8
37573292 TAATGATGCG
*
37573302 AATAATAA
1 AATATTAA
37573310 AATATATAA
1 AATAT-TAA
37573319 AATA-T-A
1 AATATTAA
37573325 AA-ATTAA
1 AATATTAA
37573332 AATATTAA
1 AATATTAA
*
37573340 AATATCAA
1 AATATTAA
*
37573348 AATATTAG
1 AATATTAA
37573356 AATA
1 AATA
37573360 ATATTAAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
5 1 0.02
6 4 0.10
7 4 0.10
8 26 0.62
9 7 0.17
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:37573561 original size:48 final size:47
Alignment explanation
Indices: 37573491--37573701 Score: 168
Period size: 48 Copynumber: 4.3 Consensus size: 47
37573481 AAATATGTAC
*
37573491 ATATA-TATTAAAAATA-AGTACATAATA-ATATTAAAAGTATGTACAT
1 ATATAGTATTAAAAATATA-TACATAATATATATTAAAA-TATATACAT
* *
37573537 AATATAGTGTTAAAAATATATACATAATATAGTTATTAAAA-ATATATAT
1 -ATATAGTATTAAAAATATATACATAATATA--TATTAAAATATATACAT
*
37573586 ATATAAGATAATATAAAAATATATACATGAA-ATAGTA-T-AAATATATATAT
1 ATAT-AG-T-AT-TAAAAATATATACAT-AATATA-TATTAAAATATATACAT
* *
37573636 ACTAATAATATTAAAAATATATACATAATATATATATAAAACATATACAAT
1 A-T-ATAGTATTAAAAATATATACATAATATATAT-TAAAATATATAC-AT
*
37573687 ATATA-TATTAGAAAT
1 ATATAGTATTAAAAAT
37573702 GATAATAATA
Statistics
Matches: 137, Mismatches: 9, Indels: 35
0.76 0.05 0.19
Matches are distributed among these distances:
47 9 0.07
48 50 0.36
49 19 0.14
50 21 0.15
51 16 0.12
52 20 0.15
53 2 0.01
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.36
Consensus pattern (47 bp):
ATATAGTATTAAAAATATATACATAATATATATTAAAATATATACAT
Found at i:37573575 original size:26 final size:25
Alignment explanation
Indices: 37573491--37573682 Score: 174
Period size: 26 Copynumber: 7.8 Consensus size: 25
37573481 AAATATGTAC
37573491 ATATA-TATTAAAAATA-AGTACATA
1 ATATAGTATTAAAAATATA-TACATA
* *
37573515 ATA-A-TATTAAAAGTATGTACATA
1 ATATAGTATTAAAAATATATACATA
*
37573538 ATATAGTGTTAAAAATATATACATA
1 ATATAGTATTAAAAATATATACATA
*
37573563 ATATAGTTATTAAAAATATATATAT-
1 ATATAG-TATTAAAAATATATACATA
37573588 ATA-AGATAATATAAAAATATATACATGA
1 ATATAG-T-AT-TAAAAATATATACAT-A
37573616 A-ATAGTA-TAAATATATATATAC-TA
1 ATATAGTATTAAA-A-ATATATACATA
37573640 ATA-A-TATTAAAAATATATACATA
1 ATATAGTATTAAAAATATATACATA
37573663 ATATA-TATATAAAACATATA
1 ATATAGTAT-TAAAA-ATATA
37573683 CAATATATAT
Statistics
Matches: 142, Mismatches: 9, Indels: 32
0.78 0.05 0.17
Matches are distributed among these distances:
22 8 0.06
23 28 0.20
24 22 0.15
25 35 0.25
26 44 0.31
27 2 0.01
28 3 0.02
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATAGTATTAAAAATATATACATA
Found at i:37573578 original size:74 final size:71
Alignment explanation
Indices: 37573495--37573682 Score: 179
Period size: 74 Copynumber: 2.5 Consensus size: 71
37573485 ATGTACATAT
* * *
37573495 ATATTAAAAATA-AGTACATAATAATATTAAAAGTATGTACAT-AATATAGTGTTAAA-A-ATAT
1 ATATTAAAAATATA-TACATAATAATATTAAAAATATATACATGAA-ATAGT-ATAAATATATAT
37573556 ATACATAATA
63 ATAC-TAATA
*
37573566 TAGTTATTAAAAATATATATAT-ATAAGATAATATAAAAATATATACATGAAATAGTATAAATAT
1 -A--TATTAAAAATATATACATAAT-A-AT-AT-TAAAAATATATACATGAAATAGTATAAATAT
37573630 ATATATACTAATA
59 ATATATACTAATA
37573643 ATATTAAAAATATATACATAATATATATATAAAACATATA
1 ATATTAAAAATATATACATAATA-ATAT-TAAAA-ATATA
37573683 CAATATATAT
Statistics
Matches: 98, Mismatches: 6, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
72 1 0.01
73 10 0.10
74 41 0.42
75 5 0.05
76 7 0.07
77 24 0.24
78 10 0.10
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (71 bp):
ATATTAAAAATATATACATAATAATATTAAAAATATATACATGAAATAGTATAAATATATATATA
CTAATA
Found at i:37573624 original size:24 final size:24
Alignment explanation
Indices: 37573481--37573682 Score: 136
Period size: 25 Copynumber: 8.3 Consensus size: 24
37573471 AATACTACAT
*
37573481 AAATATGTACAT-ATAT-AT-TAA
1 AAATATATACATAATATAATATAA
37573502 AAATA-AGTACAT-A-ATAATATTAA
1 AAATATA-TACATAATATAATA-TAA
* * * *
37573525 AAGTATGTACATAATATAGTGTTAA
1 AAATATATACATAATATAAT-ATAA
*
37573550 AAATATATACATAATATAGTTATTAAA
1 AAATATATACATAATATA-ATA-T-AA
* *
37573577 AATATATATATATAAGATAATATAA
1 AA-ATATATACATAATATAATATAA
*
37573602 AAATATATACATGAA-ATAGTATAA
1 AAATATATACAT-AATATAATATAA
37573626 ATATATATATAC-T-A-ATAATATTAA
1 A-A-ATATATACATAATATAATA-TAA
37573650 AAATATATACATAATATATATATAA
1 AAATATATACATAATATA-ATATAA
37573675 AACATATA
1 AA-ATATA
37573683 CAATATATAT
Statistics
Matches: 145, Mismatches: 15, Indels: 37
0.74 0.08 0.19
Matches are distributed among these distances:
20 2 0.01
21 13 0.09
22 8 0.06
23 20 0.14
24 24 0.17
25 39 0.27
26 19 0.13
27 6 0.04
28 14 0.10
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (24 bp):
AAATATATACATAATATAATATAA
Found at i:37573681 original size:13 final size:12
Alignment explanation
Indices: 37573573--37573682 Score: 64
Period size: 12 Copynumber: 8.8 Consensus size: 12
37573563 ATATAGTTAT
37573573 TAAAAATATATA
1 TAAAAATATATA
37573585 TATATAAGATA-ATA
1 TA-A-AA-ATATATA
37573599 TAAAAATATATA
1 TAAAAATATATA
* * *
37573611 CATGAAATA-GTA
1 TA-AAAATATATA
*
37573623 TAAATATATATA
1 TAAAAATATATA
**
37573635 TACTAATA-ATA
1 TAAAAATATATA
37573646 TTAAAAATATATA
1 -TAAAAATATATA
* *
37573659 CATAATATATATA
1 TA-AAAATATATA
37573672 TAAAACATATA
1 TAAAA-ATATA
37573683 CAATATATAT
Statistics
Matches: 72, Mismatches: 16, Indels: 19
0.67 0.15 0.18
Matches are distributed among these distances:
11 10 0.14
12 27 0.38
13 25 0.35
14 7 0.10
15 3 0.04
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.35
Consensus pattern (12 bp):
TAAAAATATATA
Found at i:37573820 original size:15 final size:15
Alignment explanation
Indices: 37573802--37573830 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37573792 CTAATAATAT
37573802 TAATAATAAATATAA
1 TAATAATAAATATAA
37573817 TAATAATAAATATA
1 TAATAATAAATATA
37573831 TATGCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TAATAATAAATATAA
Found at i:37573909 original size:15 final size:14
Alignment explanation
Indices: 37573879--37573932 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
37573869 ATATCTAAAT
*
37573879 ATAATATAATAATA
1 ATAATATAAGAATA
37573893 ATAATATAAAGAATA
1 ATAATAT-AAGAATA
* *
37573908 ATAGTGATAACAATA
1 ATAAT-ATAAGAATA
37573923 ATATATATAA
1 ATA-ATATAA
37573933 CATGAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 7 0.21
15 23 0.70
16 3 0.09
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (14 bp):
ATAATATAAGAATA
Found at i:37586716 original size:2 final size:2
Alignment explanation
Indices: 37586709--37586735 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
37586699 GAAAAGGCTC
37586709 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
37586736 ATCTTGAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37588896 original size:2 final size:2
Alignment explanation
Indices: 37588879--37588913 Score: 52
Period size: 2 Copynumber: 17.0 Consensus size: 2
37588869 TTGTGAATTG
*
37588879 TA TA AA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
37588914 ACATTGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:37588982 original size:17 final size:19
Alignment explanation
Indices: 37588940--37588988 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
37588930 CAACAAAGCC
*
37588940 CAATAAGTGATAATGCCTG
1 CAATAAATGATAATGCCTG
*
37588959 AAATAAATGATAATG-CT-
1 CAATAAATGATAATGCCTG
37588976 CAATAAATGATAA
1 CAATAAATGATAA
37588989 ATGATAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 12 0.44
18 2 0.07
19 13 0.48
ACGTcount: A:0.49, C:0.10, G:0.14, T:0.27
Consensus pattern (19 bp):
CAATAAATGATAATGCCTG
Found at i:37590867 original size:28 final size:28
Alignment explanation
Indices: 37590827--37590890 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
37590817 TGTACTAGAG
*
37590827 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
37590855 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
37590883 TACCCCTA
1 TACCCCTA
37590891 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:37591052 original size:27 final size:28
Alignment explanation
Indices: 37591016--37591096 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 28
37591006 TGCCACAAAT
* * **
37591016 TATCTATTCTGGTGGCCCTGTCAC-GTA
1 TATCTGTTCTGGTGGCACTGTCACAACA
*
37591043 TATCTGTTCTGGTGGCACTGCCACAACA
1 TATCTGTTCTGGTGGCACTGTCACAACA
* *
37591071 TATCTGTATCTGGTGACTCTGTCACA
1 TATCTGT-TCTGGTGGCACTGTCACA
37591097 TTTTCTGTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 21 0.48
28 8 0.18
29 15 0.34
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.35
Consensus pattern (28 bp):
TATCTGTTCTGGTGGCACTGTCACAACA
Found at i:37591096 original size:29 final size:28
Alignment explanation
Indices: 37591042--37591096 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
37591032 CCTGTCACGT
*
37591042 ATATCTGTTCTGGTGGCACTGCCACAAC
1 ATATCTGTTCTGGTGACACTGCCACAAC
* *
37591070 ATATCTGTATCTGGTGACTCTGTCACA
1 ATATCTGT-TCTGGTGACACTGCCACA
37591097 TTTTCTGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (28 bp):
ATATCTGTTCTGGTGACACTGCCACAAC
Found at i:37591104 original size:55 final size:56
Alignment explanation
Indices: 37590996--37591110 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
37590986 AGGAAGCGTC
* *
37590996 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGTCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGACCCTGTCACATATATCTGTAT
* * *
37591051 CTGGTGGC-ACTGCCACAACA-TATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAA-ATTATCTAT-TCTGGTGACCCTGTCACATATATCTGTAT
37591107 CTGG
1 CTGG
37591111 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTATTCTGGTGACCCTGTCACATATATCTGTAT
Found at i:37591577 original size:18 final size:18
Alignment explanation
Indices: 37591538--37591578 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
37591528 TAATAAGGCC
* *
37591538 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
37591556 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
37591574 TTTTA
1 TTTTA
37591579 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:37597889 original size:13 final size:13
Alignment explanation
Indices: 37597871--37597895 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37597861 AAATATCTCA
37597871 TATCATAATATCG
1 TATCATAATATCG
37597884 TATCATAATATC
1 TATCATAATATC
37597896 AATCTACAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
TATCATAATATCG
Found at i:37600320 original size:12 final size:12
Alignment explanation
Indices: 37600305--37600329 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37600295 TAGGATAATC
37600305 TACCTCTGTATA
1 TACCTCTGTATA
37600317 TACCTCTGTATA
1 TACCTCTGTATA
37600329 T
1 T
37600330 GCTAGAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (12 bp):
TACCTCTGTATA
Found at i:37602098 original size:46 final size:45
Alignment explanation
Indices: 37602042--37602214 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
37602032 TGGTTGAGCA
*
37602042 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
37602088 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * * *
37602133 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATATGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAATG
* *
37602181 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37602215 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:37602198 original size:93 final size:93
Alignment explanation
Indices: 37602039--37602209 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
37602029 GGATGGTTGA
* * *
37602039 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
37602104 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
37602132 GCATCCGAGCTCGTTGAGTTGAG-TCTGAGTTCACTTATGGATATGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
37602196 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
37602210 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37609293 original size:40 final size:39
Alignment explanation
Indices: 37609182--37609295 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
37609172 TTAATCACGT
* * *
37609182 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
37609222 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
*
37609262 GCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
37609296 TTTCCAGCAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.03
40 61 0.97
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:37617224 original size:40 final size:40
Alignment explanation
Indices: 37617179--37617345 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
37617169 CGGAATATAA
37617179 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37617219 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
37617259 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37617299 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
37617338 CCGGATAT
1 CCGGATAT
37617346 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:37617329 original size:80 final size:79
Alignment explanation
Indices: 37617195--37617345 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
37617185 ATAATCACGT
*
37617195 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
37617260 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
37617275 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
37617338 CCGGATAT
64 CCGGATAT
37617346 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:37620280 original size:19 final size:19
Alignment explanation
Indices: 37620244--37620282 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37620234 TTTCCATCAT
* *
37620244 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
37620263 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
37620282 A
1 A
37620283 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:37620786 original size:55 final size:56
Alignment explanation
Indices: 37620721--37620835 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
37620711 AGCATGGCTG
* * * *
37620721 CCAGATACAGA-AAATGTGATAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
37620777 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
37620832 CCAG
1 CCAG
37620836 CACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:37620832 original size:28 final size:27
Alignment explanation
Indices: 37620746--37620835 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
37620736 GTGATAGAGT
*
37620746 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
37620775 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
37620802 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
37620830 CACCAG
1 CACCAG
37620836 CACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:37620988 original size:28 final size:28
Alignment explanation
Indices: 37620944--37621005 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
37620934 TTAACCCTAG
*
37620944 GGGTATAAAGGTCATTTTACATACATAA
1 GGGTATAAAGGTAATTTTACATACATAA
* * *
37620972 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTACATACATAA
37621000 GGGTAT
1 GGGTAT
37621006 TCTAGTACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.34
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTTACATACATAA
Found at i:37621268 original size:8 final size:8
Alignment explanation
Indices: 37621252--37621283 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
37621242 CCCAAAATAC
37621252 CGGCTTTT
1 CGGCTTTT
*
37621260 CGGCATTT
1 CGGCTTTT
37621268 CGGCTTTT
1 CGGCTTTT
37621276 CGGCTTTT
1 CGGCTTTT
37621284 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:37622091 original size:12 final size:13
Alignment explanation
Indices: 37622072--37622104 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
37622062 GGGTTTGGCT
37622072 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
37622085 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
37622097 ATGGAGAA
1 ATGGAGAA
37622105 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:37634377 original size:23 final size:22
Alignment explanation
Indices: 37634347--37634393 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
37634337 ATGAGTACAG
37634347 TAAAAAATGATGAAATAAAATAA
1 TAAAAAATGATGAAATAAAA-AA
*
37634370 TAAAAAATGATTAAATAAAAAA
1 TAAAAAATGATGAAATAAAAAA
37634392 TA
1 TA
37634394 TTCAATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.23
Consensus pattern (22 bp):
TAAAAAATGATGAAATAAAAAA
Found at i:37635135 original size:26 final size:24
Alignment explanation
Indices: 37635101--37635149 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
37635091 TAAATAAAAA
* *
37635101 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
37635127 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
37635150 TTAAAACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:37636961 original size:44 final size:44
Alignment explanation
Indices: 37636909--37637007 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
37636899 AGATTTGTTG
** *
37636909 TTGTAGTTTCAATCCATTCCACTACAACTTCAGGGATATAAGAT
1 TTGTAGTTTCAATCCAAACAACTACAACTTCAGGGATATAAGAT
* * * *
37636953 TTTTAGTTTCATTCCAAACAACTACAACTTCAGGGGTATAGGAT
1 TTGTAGTTTCAATCCAAACAACTACAACTTCAGGGATATAAGAT
*
37636997 TTGTAGCTTCA
1 TTGTAGTTTCA
37637008 TCTTGTTCCA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (44 bp):
TTGTAGTTTCAATCCAAACAACTACAACTTCAGGGATATAAGAT
Found at i:37637087 original size:94 final size:94
Alignment explanation
Indices: 37636973--37637202 Score: 250
Period size: 94 Copynumber: 2.4 Consensus size: 94
37636963 ATTCCAAACA
* *
37636973 ACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTG-TTCCACTGAAACTTCAAGG-AGAT
1 ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTT-CACTGAAACTT-AAGGTAGAT
* * *
37637036 AAGAGTT-ACTATGGCAGCTTCGATCTAATCC
64 AAGAGTTGA-TATGACAACTTCGATCCAATCC
* * * * *
37637067 ACTACATCTTCAGGGATATAGGATTTGTGGCTTAATCTTGCTTCACTGCATCTTTAGGTAGATAA
1 ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTTCACTGAAACTTAAGGTAGATAA
* * * *
37637132 GATTTGATATTATAACTTTGATCCAATCC
66 GAGTTGATATGACAACTTCGATCCAATCC
* * * *
37637161 ACTGCATCTTCAGGGATATAGAATTTATAGCTTCATATTGCT
1 ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
37637203 CTACTCAGTT
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
93 3 0.03
94 107 0.95
95 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (94 bp):
ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTTCACTGAAACTTAAGGTAGATAA
GAGTTGATATGACAACTTCGATCCAATCC
Found at i:37637267 original size:137 final size:139
Alignment explanation
Indices: 37637075--37637368 Score: 344
Period size: 137 Copynumber: 2.1 Consensus size: 139
37637065 CCACTACATC
* * * * * * * *
37637075 TTCAGGGATATAGGATTTGTGGCTTAATCTTGCTTCACTGCATCTTTAGGTAGATAAGATTTGAT
1 TTCAGGGAGATAAGATTTGTAGCTTAATCTTGCTCCACTGCAACCTTAGGTAGATAAGATTCGAC
* * * *
37637140 ATTATAACTTTGATCCAATCCACTGCATCTTCAGGGATATAGAATTTATAGCTTCATATTGCTCT
66 ATTATAACTTTGATCCAATCAACTACATCTTCAGAGATATAGAATTTATAGCTTCATATTGCTCC
*
37637205 ACT-C-AGT
131 ACTGCAACT
** *
37637212 TTCAGGGAGATAAGATTTGTAGCTTCGTCTTGCTCCACTGCAACCTTAGAG-AGATAAGATTCGC
1 TTCAGGGAGATAAGATTTGTAGCTTAATCTTGCTCCACTGCAACCTTAG-GTAGATAAGATTCGA
* * * * * * *
37637276 CATTGTAACTTTGATCCGATCAACTACATCTTCAGAGATATAGGATTTGTAGGTTTATCTTGCTC
65 CATTATAACTTTGATCCAATCAACTACATCTTCAGAGATATAGAATTTATAGCTTCATATTGCTC
37637341 CACTGCAACT
130 CACTGCAACT
37637351 TT-AGGGAGATAAGATTTG
1 TTCAGGGAGATAAGATTTG
37637369 ATATTATAAC
Statistics
Matches: 131, Mismatches: 23, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
137 109 0.83
138 18 0.14
139 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (139 bp):
TTCAGGGAGATAAGATTTGTAGCTTAATCTTGCTCCACTGCAACCTTAGGTAGATAAGATTCGAC
ATTATAACTTTGATCCAATCAACTACATCTTCAGAGATATAGAATTTATAGCTTCATATTGCTCC
ACTGCAACT
Found at i:37637304 original size:231 final size:232
Alignment explanation
Indices: 37637067--37637548 Score: 700
Period size: 231 Copynumber: 2.1 Consensus size: 232
37637057 GATCTAATCC
* * *
37637067 ACTACATCTTCAGGGATATAGGATTTGT-GGCTTAATCTTGCTTCACTGCATCTTTAGGTAGATA
1 ACTACATCTTCAGGGATATAGGATTTGTAGG-TTAATCTTGCTCCACTGCAACTTTAGGGAGATA
37637131 AGATTTGATATTATAACTTTGATCCAATCCACTGCATCTTCAGGGATATAGAATTTATAGCTTCA
65 AGATTTGATATTATAACTTTGATCCAATCCACTGCATCTTCAGGGATATAGAATTTATAGCTTCA
* * * * *
37637196 TATTGCTCTACT-C-AGTTTCAGGGAGATAAGATTTGTAGCTTCGTCTTGCTCCACTGCAACCTT
130 TATTACTCCACTGCAAATTT-AGGGAGATAAGATTTGTAGCTTCATCTTACTCCACTGCAACCTT
*
37637259 AGAGAGATAAGATTCGCCATTGTAACTTTGATCCGATCA
194 AAAGAGATAAGATTCGCCATTGTAACTTTGATCCGATCA
* *
37637298 ACTACATCTTCAGAGATATAGGATTTGTAGGTTTATCTTGCTCCACTGCAACTTTAGGGAGATAA
1 ACTACATCTTCAGGGATATAGGATTTGTAGGTTAATCTTGCTCCACTGCAACTTTAGGGAGATAA
** *
37637363 GATTTGATATTATAACTTTGATCTGATCCACTGCATCTTCAGGGATATAGGATTTATAGCTTCAT
66 GATTTGATATTATAACTTTGATCCAATCCACTGCATCTTCAGGGATATAGAATTTATAGCTTCAT
* * * *
37637428 CTTACTCCACTGCAAATTTAGGGAGATAAGATTTGTAGCTTCATCTTATTCCATTGCAACTTTAA
131 ATTACTCCACTGCAAATTTAGGGAGATAAGATTTGTAGCTTCATCTTACTCCACTGCAACCTTAA
* ** * *
37637493 AGAGATAATATTTTCTATTGTAACTTTGATCCGATCC
196 AGAGATAAGATTCGCCATTGTAACTTTGATCCGATCA
* *
37637530 ACTGCATCTTCAAGGATAT
1 ACTACATCTTCAGGGATAT
37637549 GGGAGTCACT
Statistics
Matches: 222, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
231 127 0.57
232 91 0.41
233 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (232 bp):
ACTACATCTTCAGGGATATAGGATTTGTAGGTTAATCTTGCTCCACTGCAACTTTAGGGAGATAA
GATTTGATATTATAACTTTGATCCAATCCACTGCATCTTCAGGGATATAGAATTTATAGCTTCAT
ATTACTCCACTGCAAATTTAGGGAGATAAGATTTGTAGCTTCATCTTACTCCACTGCAACCTTAA
AGAGATAAGATTCGCCATTGTAACTTTGATCCGATCA
Found at i:37637367 original size:44 final size:44
Alignment explanation
Indices: 37637310--37637505 Score: 151
Period size: 44 Copynumber: 4.3 Consensus size: 44
37637300 TACATCTTCA
* * *
37637310 GAGATATAGGATTTGTAGGTTTATCTTGCTCCACTGCAACTTTAGG
1 GAGATA-A-GATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGG
* * * * *
37637356 GAGATAAGATTTGATATTATAACTTTGATCTGA-TCCACTGCATCTTCAGG
1 GAGATAAGATTTG------TAGC-TTCATCTTACTCCACTGCAACTTTAGG
* * * *
37637406 GATATAGGATTTATAGCTTCATCTTACTCCACTGCAAATTTAGG
1 GAGATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGG
* * **
37637450 GAGATAAGATTTGTAGCTTCATCTTATTCCATTGCAACTTTAAA
1 GAGATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGG
*
37637494 GAGATAATATTT
1 GAGATAAGATTT
37637506 TCTATTGTAA
Statistics
Matches: 117, Mismatches: 25, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
43 7 0.06
44 70 0.60
45 1 0.01
46 6 0.05
50 27 0.23
51 6 0.05
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (44 bp):
GAGATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGG
Found at i:37637461 original size:94 final size:94
Alignment explanation
Indices: 37637212--37637462 Score: 340
Period size: 94 Copynumber: 2.7 Consensus size: 94
37637202 TCTACTCAGT
* * * * * * *
37637212 TTCAGGGAGATAAGATTTGTAGCTTCGTCTTGCTCCACTGCAACCTTAGAGAGATAAGATTCGCC
1 TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAC
*
37637277 ATTGTAACTTTGATCCGATCAACTACATC
66 ATTATAACTTTGATCCGATCAACTACATC
* * * *
37637306 TTCAGAGATATAGGATTTGTAGGTTTATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAT
1 TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAC
* * *
37637371 ATTATAACTTTGATCTGATCCACTGCATC
66 ATTATAACTTTGATCCGATCAACTACATC
* * *
37637400 TTCAGGGATATAGGATTTATAGCTTCATCTTACTCCACTGCAAATTTAGGGAGATAAGATTTG
1 TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTG
37637463 TAGCTTCATC
Statistics
Matches: 136, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 136 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (94 bp):
TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAC
ATTATAACTTTGATCCGATCAACTACATC
Found at i:37642284 original size:49 final size:49
Alignment explanation
Indices: 37642158--37642366 Score: 320
Period size: 49 Copynumber: 4.3 Consensus size: 49
37642148 CCCTTCGGGA
* * * *
37642158 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTT-GGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
*
37642205 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37642252 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37642301 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37642350 CTTATCACATATATATA
1 CTTATCACATATATATA
37642367 TCTCATACAT
Statistics
Matches: 149, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
46 3 0.02
47 43 0.29
49 103 0.69
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37647409 original size:39 final size:40
Alignment explanation
Indices: 37647304--37647460 Score: 248
Period size: 40 Copynumber: 4.0 Consensus size: 40
37647294 AGCTACTAGC
*
37647304 TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGT
1 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
*
37647344 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
1 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
37647384 TATAGTAACT-GCACAAATGCCTTCGGG-CTTAGCCCGG-
1 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
* *
37647421 AATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 TA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
37647461 GTATCAATCC
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
37 1 0.01
38 17 0.15
39 34 0.31
40 59 0.53
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
Found at i:37647440 original size:78 final size:80
Alignment explanation
Indices: 37647304--37647460 Score: 257
Period size: 78 Copynumber: 2.0 Consensus size: 80
37647294 AGCTACTAGC
* *
37647304 TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC
1 TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
37647369 GGGACTTAGCCCGGT
66 GGGACTTAGCCCGGT
*
37647384 TATAGTAAC-TGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTT
1 TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTT
37647446 CGGGACTTAGCCCGG
65 CGGGACTTAGCCCGG
37647461 GTATCAATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 18 0.25
80 9 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
GGGACTTAGCCCGGT
Found at i:37652324 original size:45 final size:45
Alignment explanation
Indices: 37652255--37652529 Score: 356
Period size: 45 Copynumber: 6.0 Consensus size: 45
37652245 GACATTTGGG
* *
37652255 TGACATGTGAGCCAGTGAAAGACCATATTGGACATGGCATCGGCAT
1 TGAC-TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCAT
*
37652301 TGACTGTGAGCCAGTGTAAGACCATGTTGGACAAGGCATTC-GCAT
1 TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCA-TCGGCAT
* * *
37652346 TGATTATGAGCTAGTGTAAGACCATGTTGGACATGGCATCGGCAT
1 TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCAT
* * *
37652391 GGATTGTGAACCAGTGTAAGACCATGTTGGACATGGCATCGG-AGT
1 TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCA-T
* * *
37652436 TGATTGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 TGACTGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCAT
37652483 TGACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 TGAC-TGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCA
37652530 ATTCACCCTC
Statistics
Matches: 204, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
44 3 0.01
45 136 0.67
46 7 0.03
47 18 0.09
48 40 0.20
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (45 bp):
TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCAT
Found at i:37654529 original size:11 final size:11
Alignment explanation
Indices: 37654513--37654538 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37654503 GTCACTTGTA
37654513 TCCTAAACTAT
1 TCCTAAACTAT
37654524 TCCTAAACTAT
1 TCCTAAACTAT
37654535 TCCT
1 TCCT
37654539 CAGGTTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (11 bp):
TCCTAAACTAT
Found at i:37655846 original size:21 final size:19
Alignment explanation
Indices: 37655822--37655860 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
37655812 TTTCCTCATG
37655822 GCCTCCTCAAGCTCCCATGTA
1 GCCTCCTCAA-C-CCCATGTA
*
37655843 GCCTCTTCAACCCCATGT
1 GCCTCCTCAACCCCATGT
37655861 CTTTGCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 1 0.06
21 9 0.53
ACGTcount: A:0.18, C:0.44, G:0.13, T:0.26
Consensus pattern (19 bp):
GCCTCCTCAACCCCATGTA
Found at i:37658884 original size:22 final size:22
Alignment explanation
Indices: 37658856--37658900 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37658846 GCAAATCTCC
37658856 ATTCACCAAACACTACAATTAG
1 ATTCACCAAACACTACAATTAG
37658878 ATTCACCAAACACTACAATTAG
1 ATTCACCAAACACTACAATTAG
37658900 A
1 A
37658901 GAGTTTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.27, G:0.04, T:0.22
Consensus pattern (22 bp):
ATTCACCAAACACTACAATTAG
Found at i:37661610 original size:25 final size:25
Alignment explanation
Indices: 37661582--37661632 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
37661572 CCTAACAAAG
37661582 TAGGATTTTATAAAAACTTTAACTT
1 TAGGATTTTATAAAAACTTTAACTT
37661607 TAGGATTTTATAAAAACTTTAACTT
1 TAGGATTTTATAAAAACTTTAACTT
37661632 T
1 T
37661633 TTTTCAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (25 bp):
TAGGATTTTATAAAAACTTTAACTT
Found at i:37671147 original size:43 final size:42
Alignment explanation
Indices: 37671083--37671184 Score: 132
Period size: 43 Copynumber: 2.4 Consensus size: 42
37671073 ACCTACAAGG
* * *
37671083 GACACACAACCATGTCACATGGCCGTGTGTGATACACGGCTGA
1 GACACAC-ACCATGTCACATGGCCATGTGTCACACACGGCTGA
**
37671126 GACACACGACCATGTTGCATGGCCATGTGTCACACACGGCTGA
1 GACACAC-ACCATGTCACATGGCCATGTGTCACACACGGCTGA
37671169 GACACACATCCATGTC
1 GACACACA-CCATGTC
37671185 TTAGGCTGTT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (42 bp):
GACACACACCATGTCACATGGCCATGTGTCACACACGGCTGA
Found at i:37672766 original size:26 final size:26
Alignment explanation
Indices: 37672733--37672842 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
37672723 TGATACAAAT
37672733 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
37672759 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37672785 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37672811 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37672837 TGATAA
1 TGATAA
37672843 GAATTACATG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37676003 original size:12 final size:12
Alignment explanation
Indices: 37675973--37676003 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37675963 TACTCGGGAA
*
37675973 GAGGCCATGGTC
1 GAGGCCGTGGTC
37675985 GAGGCCGTGGTC
1 GAGGCCGTGGTC
37675997 GAGGCCG
1 GAGGCCG
37676004 AGGTAGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.48, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:37679384 original size:40 final size:40
Alignment explanation
Indices: 37679282--37679433 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
37679272 AAATTGAATG
* * * * *
37679282 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
37679322 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
37679362 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * *
37679402 AAATCCGGGCCAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
37679434 AAATCGTGAT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:37679448 original size:40 final size:39
Alignment explanation
Indices: 37679280--37679450 Score: 150
Period size: 40 Copynumber: 4.3 Consensus size: 39
37679270 AGAAATTGAA
* *
37679280 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
37679320 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
37679360 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* * *
37679400 TTAAATCCGGGCCAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
37679440 TGATATCCGGG
1 TGATATCCGGG
37679451 TAAAGTCCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 94 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:37682127 original size:35 final size:35
Alignment explanation
Indices: 37682060--37682227 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
37682050 TCCTCATTGA
*** *
37682060 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
37682096 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
37682136 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
37682171 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
37682206 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
37682228 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:37682186 original size:75 final size:73
Alignment explanation
Indices: 37682055--37682227 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
37682045 GGTTTTCCTC
*** * * **
37682055 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
37682120 TCAGTATGG
65 TCAGTATGG
*
37682129 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
37682193 ACTCAGTATGG
63 ACTCAGTATGG
37682204 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
37682228 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:37686891 original size:66 final size:68
Alignment explanation
Indices: 37686815--37687001 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
37686805 TAGTACCACT
*
37686815 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
37686877 CACG
65 CACG
37686881 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
37686946 ATCACG
63 ATCACG
37686952 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
37687002 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:37686926 original size:71 final size:71
Alignment explanation
Indices: 37686838--37687001 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
37686828 CGATTTGTCT
37686838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37686903 CTTTCA
66 CTTTCA
37686909 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
37686974 CTTTCA
66 CTTTCA
37686980 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
37687002 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:37687039 original size:71 final size:70
Alignment explanation
Indices: 37686838--37687035 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
37686828 CGATTTGTCT
* * *
37686838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
37686903 CTTTCA
65 CTTTCA
* * *
37686909 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
37686974 CTTTCA
65 CTTTCA
* *
37686980 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
37687036 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:37694455 original size:66 final size:68
Alignment explanation
Indices: 37694379--37694565 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
37694369 TAGTACCACT
*
37694379 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
37694441 CACG
65 CACG
37694445 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
37694510 ATCACG
63 ATCACG
37694516 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
37694566 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Done.