Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 130 of 770
Found at i:37998245 original size:18 final size:18
Alignment explanation
Indices: 37998219--37998258 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
37998209 GATAAACGTG
*
37998219 TTTTGAGCAAATTTCCAA
1 TTTTAAGCAAATTTCCAA
37998237 TTTTAAGCAAATTTCCAA
1 TTTTAAGCAAATTTCCAA
37998255 TTTT
1 TTTT
37998259 CTTTCTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.45
Consensus pattern (18 bp):
TTTTAAGCAAATTTCCAA
Found at i:37998544 original size:18 final size:18
Alignment explanation
Indices: 37998500--37998535 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
37998490 TTTTGACCAT
37998500 TAATTTAAACTATTCGAA
1 TAATTTAAACTATTCGAA
37998518 TAATTTAAACTATTCGAA
1 TAATTTAAACTATTCGAA
37998536 CTTTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (18 bp):
TAATTTAAACTATTCGAA
Found at i:37999671 original size:41 final size:43
Alignment explanation
Indices: 37999614--37999727 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 43
37999604 TATGTGGTTA
** * *
37999614 CGTGTAAGACTATGTCTAGGACA-TCGGCATCG-TATTTGAT-T
1 CGTGTAAGACCCTGTCTAGGACAGT-GGCATCGATATGTGATAG
*
37999655 CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAG
1 CGTGTAAGACCCTGTCTAGGACAGTGGCATCGATATGTGATAG
*
37999698 CATGTAAGACCAC-GTCTAGGAC-GTTGGCAT
1 CGTGTAAGACC-CTGTCTAGGACAG-TGGCAT
37999728 TGTATGATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
41 27 0.44
42 9 0.15
43 24 0.39
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCCTGTCTAGGACAGTGGCATCGATATGTGATAG
Found at i:38001938 original size:30 final size:31
Alignment explanation
Indices: 38001868--38001949 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
38001858 TCAATCTCAA
38001868 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
38001898 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
38001928 CATATCACTGGG-CGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
38001950 ACTGTAAACG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
29 10 0.21
30 16 0.33
31 22 0.46
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:38002190 original size:24 final size:25
Alignment explanation
Indices: 38002163--38002240 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
38002153 GCCTAGCCTC
38002163 TTTTAAT-AACAGGGGCAAAGCCCT
1 TTTTAATAAACAGGGGCAAAGCCCT
* *
38002187 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACAGGGGCAAAGCCCT
*** *
38002212 TTTCGGTAAACTGGGGCAAAAGCCCT
1 TTTTAATAAACAGGGGC-AAAGCCCT
38002238 TTT
1 TTT
38002241 GCACTTCCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.12
25 31 0.65
26 11 0.23
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (25 bp):
TTTTAATAAACAGGGGCAAAGCCCT
Found at i:38002240 original size:26 final size:25
Alignment explanation
Indices: 38002174--38002240 Score: 107
Period size: 25 Copynumber: 2.6 Consensus size: 25
38002164 TTTAATAACA
*
38002174 GGGGCAAAGCCCTTTTTGATAAACT
1 GGGGCAAAGCCCTTTTCGATAAACT
*
38002199 GGGGCAAAGCCCTTTTCGGTAAACT
1 GGGGCAAAGCCCTTTTCGATAAACT
38002224 GGGGCAAAAGCCCTTTT
1 GGGGC-AAAGCCCTTTT
38002241 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 28 0.72
26 11 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (25 bp):
GGGGCAAAGCCCTTTTCGATAAACT
Found at i:38004160 original size:465 final size:465
Alignment explanation
Indices: 38003289--38004219 Score: 1826
Period size: 465 Copynumber: 2.0 Consensus size: 465
38003279 TTAGAAGATA
38003289 AAGGGATTGGCCACCAAAACGTGAAGGGAAAAGGAAGGTTGCTGGTCAATAAAGAATCGGCACCA
1 AAGGGATTGGCCACCAAAACGTGAAGGGAAAAGGAAGGTTGCTGGTCAATAAAGAATCGGCACCA
* *
38003354 CCAAGCTTCACAGGTTTGGCTTTTTGCGACTTTTCGGCAGATGTGGAGGTAGGGAAAGAAGTAGT
66 CCAAGCTTCACAGGTTCGGCTTTTTGCGACTTTTCAGCAGATGTGGAGGTAGGGAAAGAAGTAGT
38003419 AGGTGAACGGAAGGGAGTAGTGAGCTAGTTTTGGAGAAAAGAAAAGGAAGGAATGCTGGATGTAA
131 AGGTGAACGGAAGGGAGTAGTGAGCTAGTTTTGGAGAAAAGAAAAGGAAGGAATGCTGGATGTAA
38003484 GGGTGGTAGATTCGGCTAGAGGAGAAGAAAGAAAAAGAAAAGACTAATCTAAAGAAGAAAACGGT
196 GGGTGGTAGATTCGGCTAGAGGAGAAGAAAGAAAAAGAAAAGACTAATCTAAAGAAGAAAACGGT
*
38003549 ATAACCTAAGTCCCTAATGCTGAAAATACTTACCTAATACCCCTTTGCCGAAATCCCCTCTCGAA
261 ATAACCTAAGTCCCTAATGCCGAAAATACTTACCTAATACCCCTTTGCCGAAATCCCCTCTCGAA
38003614 TCCCCTCTATTCGGCTAACTCTATCTCCCTCTCAAATCCCTAAAATCTCTCCCCTTATCCCTCCT
326 TCCCCTCTATTCGGCTAACTCTATCTCCCTCTCAAATCCCTAAAATCTCTCCCCTTATCCCTCCT
38003679 TAATCCATACGTTTGACTAATTCAAACTCTCTCCCACAGAGTTCCATTCGGCTACAACTCCTGCA
391 TAATCCATACGTTTGACTAATTCAAACTCTCTCCCACAGAGTTCCATTCGGCTACAACTCCTGCA
38003744 TGCTCAAAGT
456 TGCTCAAAGT
38003754 AAGGGATTGGCCACCAAAACGTGAAGGGAAAAGGAAGGTTGCTGGTCAATAAAGAATCGGCACCA
1 AAGGGATTGGCCACCAAAACGTGAAGGGAAAAGGAAGGTTGCTGGTCAATAAAGAATCGGCACCA
38003819 CCAAGCTTCACAGGTTCGGCTTTTTGCGACTTTTCAGCAGATGTGGAGGTAGGGAAAGAAGTAGT
66 CCAAGCTTCACAGGTTCGGCTTTTTGCGACTTTTCAGCAGATGTGGAGGTAGGGAAAGAAGTAGT
*
38003884 AGGTGAACGGAAGGGAGTAGTGATCTAGTTTTGGAGAAAAGAAAAGGAAGGAATGCTGGATGTAA
131 AGGTGAACGGAAGGGAGTAGTGAGCTAGTTTTGGAGAAAAGAAAAGGAAGGAATGCTGGATGTAA
38003949 GGGTGGTAGATTCGGCTAGAGGAGAAGAAAGAAAAAGAAAAGACTAATCTAAAGAAGAAAACGGT
196 GGGTGGTAGATTCGGCTAGAGGAGAAGAAAGAAAAAGAAAAGACTAATCTAAAGAAGAAAACGGT
38004014 ATAACCTAAGTCCCTAATGCCGAAAATACTTACCTAATACCCCTTTGCCGAAATCCCCTCTCGAA
261 ATAACCTAAGTCCCTAATGCCGAAAATACTTACCTAATACCCCTTTGCCGAAATCCCCTCTCGAA
38004079 TCCCCTCTATTCGGCTAACTCTATCTCCCTCTCAAATCCCTAAAATCTCTCCCCTTATCCCTCCT
326 TCCCCTCTATTCGGCTAACTCTATCTCCCTCTCAAATCCCTAAAATCTCTCCCCTTATCCCTCCT
38004144 TAATCCATACGTTTGACTAATTCAAACTCTCTCCCACAGAGTTCCATTCGGCTACAACTCCTGCA
391 TAATCCATACGTTTGACTAATTCAAACTCTCTCCCACAGAGTTCCATTCGGCTACAACTCCTGCA
38004209 TGCTCAAAGT
456 TGCTCAAAGT
38004219 A
1 A
38004220 TAAAAATTAA
Statistics
Matches: 462, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
465 462 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (465 bp):
AAGGGATTGGCCACCAAAACGTGAAGGGAAAAGGAAGGTTGCTGGTCAATAAAGAATCGGCACCA
CCAAGCTTCACAGGTTCGGCTTTTTGCGACTTTTCAGCAGATGTGGAGGTAGGGAAAGAAGTAGT
AGGTGAACGGAAGGGAGTAGTGAGCTAGTTTTGGAGAAAAGAAAAGGAAGGAATGCTGGATGTAA
GGGTGGTAGATTCGGCTAGAGGAGAAGAAAGAAAAAGAAAAGACTAATCTAAAGAAGAAAACGGT
ATAACCTAAGTCCCTAATGCCGAAAATACTTACCTAATACCCCTTTGCCGAAATCCCCTCTCGAA
TCCCCTCTATTCGGCTAACTCTATCTCCCTCTCAAATCCCTAAAATCTCTCCCCTTATCCCTCCT
TAATCCATACGTTTGACTAATTCAAACTCTCTCCCACAGAGTTCCATTCGGCTACAACTCCTGCA
TGCTCAAAGT
Found at i:38008814 original size:29 final size:29
Alignment explanation
Indices: 38008776--38008856 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
38008766 AACCAATCTT
* * *
38008776 ATTCAAATGGCCCATCT-GGCCCAGTTCAT
1 ATTCATATGGCCCA-CTAGGCCCAATTCAC
*
38008805 ATTCTTATGGCCCACTAGGCCCAATTCAC
1 ATTCATATGGCCCACTAGGCCCAATTCAC
*
38008834 ATTCATATGG-CCATTAGGCCCAA
1 ATTCATATGGCCCACTAGGCCCAA
38008857 ATCATATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
28 14 0.31
29 31 0.69
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
ATTCATATGGCCCACTAGGCCCAATTCAC
Found at i:38008854 original size:57 final size:57
Alignment explanation
Indices: 38008753--38008864 Score: 129
Period size: 57 Copynumber: 2.0 Consensus size: 57
38008743 CATACATGCA
** **
38008753 TATGGCCCACTAGAACCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGAACCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
** *
38008810 TATGGCCCACTAGGCCCAATTCACATTCATATGG-CCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGAACCAA-TCACATTCAAATGGCCCATCT-GGCCCAAATCATATT
38008865 ATATTCATGC
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
56 1 0.02
57 34 0.74
58 11 0.24
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAGAACCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:38010335 original size:16 final size:16
Alignment explanation
Indices: 38010316--38010348 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
38010306 AAAATTTTAA
*
38010316 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
38010332 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
38010348 G
1 G
38010349 GGCGTTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:38012425 original size:40 final size:40
Alignment explanation
Indices: 38012200--38012397 Score: 285
Period size: 40 Copynumber: 5.0 Consensus size: 40
38012190 TCGAATGATG
* * * *
38012200 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
38012240 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
38012280 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
38012320 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
38012360 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
38012398 TAACCGGGCT
Statistics
Matches: 148, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 1 0.01
40 139 0.94
41 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:38012432 original size:120 final size:120
Alignment explanation
Indices: 38012200--38012432 Score: 278
Period size: 120 Copynumber: 1.9 Consensus size: 120
38012190 TCGAATGATG
* *
38012200 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* **
38012265 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* * **
38012320 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
* * *
38012382 TTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
63 TTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
38012433 AGCTATGTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
119 2 0.02
120 84 0.88
121 10 0.10
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:38023813 original size:86 final size:85
Alignment explanation
Indices: 38023650--38023813 Score: 181
Period size: 86 Copynumber: 1.9 Consensus size: 85
38023640 AGTTCGTACA
* ** * *
38023650 ATGCCATGTCCCAGATATGGTCTTACAGGTTATCACATATCGATGCCGATAGCCCAGCTATGGTC
1 ATGCCATGTCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATAGCCCAGCTATGGTC
**
38023715 TTACTCGAAATCAAATAACG
66 TTACTAAAAATCAAATAACG
* **
38023735 ATGCCAATGTCCTAGACATGGTCTTACACATAATCACATAAT-GATGCCAATTTCCCAGAC-ATG
1 ATGCC-ATGTCCCAGACATGGTCTTACACATAATCACAT-ATCGATGCCAATAGCCCAG-CTATG
38023798 GTCTTAC-AAATAATCA
63 GTCTTACTAAA-AATCA
38023814 CATCTCGTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
85 6 0.09
86 56 0.86
87 3 0.05
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (85 bp):
ATGCCATGTCCCAGACATGGTCTTACACATAATCACATATCGATGCCAATAGCCCAGCTATGGTC
TTACTAAAAATCAAATAACG
Found at i:38023814 original size:43 final size:43
Alignment explanation
Indices: 38023650--38023816 Score: 164
Period size: 43 Copynumber: 3.9 Consensus size: 43
38023640 AGTTCGTACA
* * *
38023650 ATGCC-ATGTCCCAGATATGGTCTTACAGGTTATCACAT-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAGATAATCACATAAT-G
* * * *
38023692 ATGCCGATAG-CCCAG-CTATGGTCTTACTCGA-AATCAAATAACG
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTAC-AGATAATCACATAATG
* *
38023735 ATGCCAATGTCCTAGACATGGTCTTACACATAATCACATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACAGATAATCACATAATG
* *
38023778 ATGCCAATTTCCCAGACATGGTCTTACAAATAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACAGATAATCACAT
38023817 CTCGTTAATC
Statistics
Matches: 102, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
42 7 0.07
43 91 0.89
44 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACAGATAATCACATAATG
Found at i:38028691 original size:43 final size:43
Alignment explanation
Indices: 38028643--38028746 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
38028633 TATCCTAGAT
** * **
38028643 ATGGTCTTACATGTTTTCATATACCGATGTTAACGTCCCAAAC
1 ATGGTCTTACATGTAATCATATAACGATGCCAACGTCCCAAAC
* * * *
38028686 ATGGTCTTACACGAAATCATATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCATATAACGATGCCAACGTCCCAAAC
38028729 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
38028747 TCATCTCGAT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCATATAACGATGCCAACGTCCCAAAC
Found at i:38031078 original size:6 final size:6
Alignment explanation
Indices: 38031047--38031128 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
38031037 AAGAAACATT
* *
38031047 ATCAGA A-CTAGA ACCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
38031096 ATCAGT ATCAGGTA A-CATA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
38031129 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 4 0.07
6 47 0.78
7 7 0.12
8 2 0.03
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:38031092 original size:25 final size:25
Alignment explanation
Indices: 38031061--38031128 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
38031051 GAACTAGAAC
*
38031061 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
38031086 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
38031111 CATAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
38031129 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:38031298 original size:28 final size:26
Alignment explanation
Indices: 38031243--38031324 Score: 92
Period size: 28 Copynumber: 3.0 Consensus size: 26
38031233 AGCATTGCTG
* * *
38031243 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
*
38031269 CCAGATACAGATATTTGTGGCATAGCCA
1 CCAGA-ACAGATA-TTGTGGCAAAGCCA
*
38031297 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
38031324 C
1 C
38031325 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 21 0.44
28 22 0.46
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:38031917 original size:27 final size:27
Alignment explanation
Indices: 38031887--38032379 Score: 529
Period size: 27 Copynumber: 18.3 Consensus size: 27
38031877 GGGGCAAAAT
* *
38031887 GGTAATTTTACCCTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* * **
38031914 GGTAATTCTACCTTATAGGGGTAAATC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
38031941 AGTATTTCTAACCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
38031968 GGTAATTCTACCCTACAGTGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
38031995 AATAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
38032022 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
38032049 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
38032076 GGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
38032103 AGTAATTATACCCTACAGGGCTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
38032130 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
38032157 AGTAATTATACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
38032184 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
38032211 GATAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * ** *
38032238 AATAATTCTACCCTATAACGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
38032265 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
38032292 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
38032319 AATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
38032346 AGTAATTCTACCTTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
38032373 AGTAATT
1 GGTAATT
38032380 TTGTAAATCG
Statistics
Matches: 396, Mismatches: 69, Indels: 2
0.85 0.15 0.00
Matches are distributed among these distances:
27 394 0.99
28 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:38032559 original size:108 final size:108
Alignment explanation
Indices: 38032401--38032812 Score: 538
Period size: 108 Copynumber: 3.8 Consensus size: 108
38032391 GGGTAAAATG
* * * ** * * **
38032401 GTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAGTGTATTTTAATAATTTTACA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
*** * ** * * * *
38032466 GGTC-GAGGATATTTCAGTAATTTCACAAATCAAGGGTATTTTG
66 AACCAG-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
* * *
38032509 GTAATTCTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
*
38032574 AACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
66 AACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
* * **
38032617 GTAATTTTACAAACCAAGGGTATATTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
*
38032682 AACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTA
66 AACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
**
38032725 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
38032790 AACCAGGGGTATTTTGGTAATTT
66 AACCAGGGGTATTTTGGTAATTT
38032813 GGTAAACTAA
Statistics
Matches: 268, Mismatches: 35, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
108 267 1.00
109 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (108 bp):
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
AACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
Found at i:38032819 original size:27 final size:27
Alignment explanation
Indices: 38032399--38032812 Score: 486
Period size: 27 Copynumber: 15.3 Consensus size: 27
38032389 GAGGGTAAAA
* * * *
38032399 TGGTAATTTTATAAATCAGGGGTACTT
1 TGGTAATTTTACAAACCAAGGGTATTT
** * *
38032426 TGGTAATTTTACAAGTCGAGTGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
** *** * *
38032453 TAATAATTTTACAGGTCGAGGATATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
** * *
38032480 CAGTAATTTCACAAATCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* * *
38032507 TGGTAATTCTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
*
38032534 TGATAATTTTACAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* *
38032561 TGGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
*
38032588 TGGTAATTTTATAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* *
38032615 TAGTAATTTTACAAACCAAGGGTATAT
1 TGGTAATTTTACAAACCAAGGGTATTT
**
38032642 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
*
38032669 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* *
38032696 TGGTGATTTTATAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
* *
38032723 TAGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
**
38032750 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
*
38032777 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
38032804 TGGTAATTT
1 TGGTAATTT
38032813 GGTAAACTAA
Statistics
Matches: 328, Mismatches: 59, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 328 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAAGGGTATTT
Found at i:38032819 original size:108 final size:108
Alignment explanation
Indices: 38032482--38032812 Score: 545
Period size: 108 Copynumber: 3.1 Consensus size: 108
38032472 GGATATTTCA
* * * * * * * **
38032482 GTAATTTCACAAATCAAGGGTATTTTGGTAATTCTACAAACTAGGGGTATTTTGATAATTTTACA
1 GTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTA
*
38032547 AACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
66 AACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
* *
38032590 GTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATATTGGTAATTTTGTA
1 GTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTA
38032655 AACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
66 AACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
*
38032698 GTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTA
1 GTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTA
38032763 AACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
66 AACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
38032806 GTAATTT
1 GTAATTT
38032813 GGTAAACTAA
Statistics
Matches: 207, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 207 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (108 bp):
GTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTA
AACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
Found at i:38034778 original size:6 final size:6
Alignment explanation
Indices: 38034760--38034841 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
38034750 AAGAAACATT
*
38034760 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
38034809 ATCAGT ATCAGGTA A-CATA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
38034842 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
5 4 0.07
6 48 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:38034781 original size:18 final size:18
Alignment explanation
Indices: 38034760--38034841 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 18
38034750 AAGAAACATT
38034760 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
38034778 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
* *
38034795 GTGACAGAATCAGAATCAGT
1 AT--CAGAATCAGAATCAGA
* *
38034815 ATCAGGTAA-CATAATCAAA
1 ATCA-G-AATCAGAATCAGA
38034834 ATCAGAAT
1 ATCAGAAT
38034842 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
17 3 0.06
18 18 0.35
19 28 0.54
20 3 0.06
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:38034805 original size:25 final size:25
Alignment explanation
Indices: 38034774--38034841 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
38034764 GAACTAGAAT
*
38034774 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
38034799 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
38034824 CATAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
38034842 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:38035011 original size:28 final size:27
Alignment explanation
Indices: 38034956--38035037 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
38034946 AGCATTGCTG
* * *
38034956 CCAGA-ACAGATATTGTGACAGAGTCA
1 CCAGATACAGATATTGTGGCAAAGCCA
*
38034982 CCAGATACAGATATTTGTGGCATAGCCA
1 CCAGATACAGATA-TTGTGGCAAAGCCA
*
38035010 CCAGGAT-CAGATAATGTGGCAAAGCCA
1 CCA-GATACAGATATTGTGGCAAAGCCA
38035037 C
1 C
38035038 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 20 0.42
28 20 0.42
29 3 0.06
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAAAGCCA
Found at i:38035648 original size:27 final size:27
Alignment explanation
Indices: 38035629--38035903 Score: 313
Period size: 27 Copynumber: 10.2 Consensus size: 27
38035619 GGTATCTCGA
**
38035629 TAATTCTACCTTACAGGGGTAAATCAG
1 TAATTCTACCTTACAGGGGTATTTCAG
*
38035656 TATTTCTAACCTATA-A-GGGTATTTCAG
1 TAATTCT-ACCT-TACAGGGGTATTTCAG
* * *
38035683 TAATTCTACCCTACAGTGGTATTTCGG
1 TAATTCTACCTTACAGGGGTATTTCAG
* *
38035710 TAATTCTACCCTACAGTGGTATTTC-G
1 TAATTCTACCTTACAGGGGTATTTCAG
*
38035736 ATAATTCTACCTTACAGGGGCATTTCAG
1 -TAATTCTACCTTACAGGGGTATTTCAG
* * *
38035764 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCTTACAGGGGTATTTCAG
* * *
38035791 TAATTCTACCTTATAGAGGTATTTTAG
1 TAATTCTACCTTACAGGGGTATTTCAG
* * *
38035818 TAATTATACCCTACAGGGGTATTTCAA
1 TAATTCTACCTTACAGGGGTATTTCAG
*
38035845 TAATTCTACCTTACATGGGTATTTCAG
1 TAATTCTACCTTACAGGGGTATTTCAG
* *
38035872 TAATTCTACCTTACAGGGGTGTTTCGG
1 TAATTCTACCTTACAGGGGTATTTCAG
38035899 TAATT
1 TAATT
38035904 TTGTAAATCG
Statistics
Matches: 209, Mismatches: 33, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
25 2 0.01
26 5 0.02
27 194 0.93
28 6 0.03
29 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTCTACCTTACAGGGGTATTTCAG
Found at i:38035970 original size:27 final size:25
Alignment explanation
Indices: 38035942--38036334 Score: 214
Period size: 27 Copynumber: 14.7 Consensus size: 25
38035932 TGTAAATCAG
* *
38035942 GGGTACTTTGGTAATTTACAAGTCGA
1 GGGTATTTTGGTAATTTACAA-ACGA
*** **
38035968 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTTGGTAA-TTTACA-AACGA
* **
38035995 GGATATTTCAGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTT-ACAAA-CGA
*
38036021 GGGTATTTTGGTAATTCTACAAACTA
1 GGGTATTTTGGTAATT-TACAAACGA
* *
38036047 GGGGTATTTTGATAATTTTACAAACCAA
1 -GGGTATTTTGGTAA-TTTACAAA-CGA
*
38036075 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAA-TTTACAAACGA
* *
38036101 GGGGTATTTTGGTAATTTTATAAACCAA
1 -GGGTATTTTGGTAA-TTTACAAA-CGA
** *
38036129 GGGTATTTTAATAATTTTACAAACCAA
1 GGGTATTTTGGTAA-TTTACAAA-CGA
* ** *
38036156 GGGTATTTTTGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAA-TTTACAAAC-GA
* *
38036183 GTGTATTTTGATAATTTTACAAATC-A
1 GGGTATTTTGGTAA-TTTACAAA-CGA
* * *
38036209 GGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTTGGT-AATTTACAAA-CGA
* *
38036237 GGGTATTTTAGTAATTTTACAAACCA
1 GGGTATTTTGGTAA-TTTACAAACGA
** *
38036263 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAA-TTTACAAA-CGA
*
38036291 GGGTATTTTGGTAATCTTACAAACCAA
1 GGGTATTTTGGTAAT-TTACAAA-CGA
38036318 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
38036335 GGTAAACTAA
Statistics
Matches: 302, Mismatches: 45, Indels: 40
0.78 0.12 0.10
Matches are distributed among these distances:
25 1 0.00
26 43 0.14
27 247 0.82
28 11 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (25 bp):
GGGTATTTTGGTAATTTACAAACGA
Found at i:38036143 original size:81 final size:81
Alignment explanation
Indices: 38035940--38036334 Score: 436
Period size: 81 Copynumber: 4.9 Consensus size: 81
38035930 TCTGTAAATC
* ** * ** *** * * *
38035940 AGGGGTACTTTGGTAA-TTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGATATTTC
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTT
*
38036004 AGTAATTTCACAAA-T
66 AGTAATTTTACAAACT
* * *
38036019 CA-GGGTATTTTGGTAATTCTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
1 -AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
*
38036083 TGGTAATTTTACAAACT
65 TAGTAATTTTACAAACT
* *
38036100 AGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAATAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTT
* **
38036165 TGTAATTTTGTAAACT
66 AGTAATTTTACAAACT
* * * * * * * *
38036181 AAGTGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTT
*
38036246 AGTAATTTTACAAACC
66 AGTAATTTTACAAACT
** * *
38036262 AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATCTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTT
*
38036327 GGTAATTT
66 AGTAATTT
38036335 GGTAAACTAA
Statistics
Matches: 262, Mismatches: 50, Indels: 5
0.83 0.16 0.02
Matches are distributed among these distances:
79 13 0.05
80 48 0.18
81 201 0.77
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTTT
AGTAATTTTACAAACT
Found at i:38036341 original size:27 final size:27
Alignment explanation
Indices: 38036005--38036334 Score: 419
Period size: 27 Copynumber: 12.3 Consensus size: 27
38035995 GGATATTTCA
* *
38036005 GTAATTTCACAAATC-AGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
38036031 GTAATTCTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
*
38036058 ATAATTTTACAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
38036085 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
38036112 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
38036139 ATAATTTTACAAACCAAGGGTATTTTT
1 GTAATTTTACAAACCAAGGGTATTTTG
** * *
38036166 GTAATTTTGTAAACTAAGTGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
38036193 ATAATTTTACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
38036220 GTGATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
*
38036247 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
**
38036274 GTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
*
38036301 GTAATCTTACAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
38036328 GTAATTT
1 GTAATTT
38036335 GGTAAACTAA
Statistics
Matches: 254, Mismatches: 49, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
26 11 0.04
27 243 0.96
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAAGGGTATTTTG
Found at i:38039791 original size:12 final size:12
Alignment explanation
Indices: 38039774--38039822 Score: 71
Period size: 12 Copynumber: 4.1 Consensus size: 12
38039764 TCGGCCGCAC
38039774 GCCCATGTGTCA
1 GCCCATGTGTCA
38039786 GCCCATGTGTCA
1 GCCCATGTGTCA
* *
38039798 GCCCATGTATTA
1 GCCCATGTGTCA
*
38039810 GTCCATGTGTCA
1 GCCCATGTGTCA
38039822 G
1 G
38039823 ACACGCCAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (12 bp):
GCCCATGTGTCA
Found at i:38041120 original size:27 final size:27
Alignment explanation
Indices: 38041079--38041146 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
38041069 GGGCAAAATA
* *
38041079 GTCATTTTACCCTACAGGGGTATGTAG
1 GTCATTTTACACTACAAGGGTATGTAG
* *
38041106 GTCATTTTACACTACAAGGGTATTTTG
1 GTCATTTTACACTACAAGGGTATGTAG
*
38041133 GTAATTTTACACTA
1 GTCATTTTACACTA
38041147 TAAAGGCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTAG
Found at i:38041157 original size:27 final size:27
Alignment explanation
Indices: 38041109--38041170 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
38041099 TATGTAGGTC
* * * *
38041109 ATTTTACACTACAAGGGTATTTTGGTA
1 ATTTTACACTACAAAGGCATTTCGATA
*
38041136 ATTTTACACTATAAAGGCATTTCGATA
1 ATTTTACACTACAAAGGCATTTCGATA
38041163 ATTTTACA
1 ATTTTACA
38041171 AATTGGGGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAAGGCATTTCGATA
Found at i:38041185 original size:27 final size:27
Alignment explanation
Indices: 38041154--38041524 Score: 382
Period size: 27 Copynumber: 13.9 Consensus size: 27
38041144 CTATAAAGGC
* *
38041154 ATTTCGATAATTTTACAAATTGGGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
* *
38041181 GTTTCGATAATTTTACAAATTGAGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
* * *
38041208 GTTTCGGTAATTTTACAAATCAAGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
*
38041235 GTTTCGATAATTTTACAAATCGAGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
* *
38041262 ATTT-TAGTAATTTCAC-AATCGAGGGT
1 ATTTCGA-TAATTTTACAAATCGAGGGT
* *
38041288 ATTT-TAGTAATTTTACAAAT-GGGGGT
1 ATTTCGA-TAATTTTACAAATCGAGGGT
*
38041314 ATTTCGATAATTTTACAAATTGAGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
* * * * * *
38041341 GTTTTGGTAATTTCACAAATTGCGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
* *
38041368 ATTTCAATAATTTTACAAATTGAGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
* *
38041395 ATTTCGGTAA-TTT-CATAATCAAGGGT
1 ATTTCGATAATTTTACA-AATCGAGGGT
38041421 ATTTCGATAATTTTACAAATCGAGGGT
1 ATTTCGATAATTTTACAAATCGAGGGT
* *
38041448 ATTTC-AGTAATTTCAC-AATAGAGGGT
1 ATTTCGA-TAATTTTACAAATCGAGGGT
* *
38041474 ATTT-TAGTAATTTTACAAAGCGAGGGT
1 ATTTCGA-TAATTTTACAAATCGAGGGT
*
38041501 ATTTCGATAATTTTAAAAATCGAG
1 ATTTCGATAATTTTACAAATCGAG
38041525 TGCATTTCAG
Statistics
Matches: 294, Mismatches: 39, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.01
26 92 0.31
27 197 0.67
28 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTCGATAATTTTACAAATCGAGGGT
Found at i:38041339 original size:53 final size:53
Alignment explanation
Indices: 38041122--38041520 Score: 360
Period size: 53 Copynumber: 7.5 Consensus size: 53
38041112 TTACACTACA
* * * * *
38041122 AGGGTATTTTGGTAATTTTACACTATAAAGGCATTTCGATAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACA-AATGAGGGTATTTCGATAATTTTACAAATCG
* * * * * * *
38041176 GGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGTAATTTTACAAATCA
1 AGGGTATTTTGGTAATTTTACAAA-TGAGGGTATTTCGATAATTTTACAAATCG
* * * * *
38041230 AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTTGGTAATTTTACAAAT-GAGGGTATTTCGA-TAATTTTACAAATCG
* * *
38041283 AGGGTATTTTAGTAATTTTACAAATGGGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAATGAGGGTATTTCGATAATTTTACAAATCG
* * * * *
38041336 AGGGTGTTTTGGTAATTTCACAAATTGCGGGTATTTCAATAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAA-TGAGGGTATTTCGATAATTTTACAAATCG
* *
38041390 AGGGTATTTCGGTAA-TTT-CATAATCAAGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACA-AAT-GAGGGTATTTCGATAATTTTACAAATCG
** * * *
38041443 AGGGTATTTCAGTAATTTCAC-AATAGAGGGTATTT-TAGTAATTTTACAAAGCG
1 AGGGTATTTTGGTAATTTTACAAAT-GAGGGTATTTCGA-TAATTTTACAAATCG
* * *
38041496 AGGGTATTTCGATAATTTTAAAAAT
1 AGGGTATTTTGGTAATTTTACAAAT
38041521 CGAGTGCATT
Statistics
Matches: 285, Mismatches: 48, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
52 21 0.07
53 138 0.48
54 125 0.44
55 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAATGAGGGTATTTCGATAATTTTACAAATCG
Found at i:38041339 original size:133 final size:133
Alignment explanation
Indices: 38041154--38041541 Score: 503
Period size: 133 Copynumber: 2.9 Consensus size: 133
38041144 CTATAAAGGC
* * *
38041154 ATTTCGATAATTTTACAAATTGGGGGTGTTTCGATAATTTTACAAATTGAGGGTGTTTCGGTAAT
1 ATTTAGATAATTTTACAAA-TGGGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTTGGTAAT
* * * *
38041219 TTTACAAATCAAGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCGA
65 TTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCAA
38041284 GGGT
130 GGGT
38041288 ATTTTAG-TAATTTTACAAATGGGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTTGGTAAT
1 A-TTTAGATAATTTTACAAATGGGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTTGGTAAT
* * * * * * *
38041352 TTCACAAATTGCGGGTATTTCAATAATTTTACAAATTGAGGGTATTTCGGTAATTTCATAATCAA
65 TTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCAA
38041417 GGGT
130 GGGT
* * * * * *
38041421 ATTTCGATAATTTTACAAATCGAGGGTATTTC-AGTAATTTCAC-AATAGAGGGTATTTTAGTAA
1 ATTTAGATAATTTTACAAAT-GGGGGTATTTCGA-TAATTTTACAAATTGAGGGTGTTTTGGTAA
* * * *
38041484 TTTTACAAAGCGAGGGTATTTCGATAATTTTAAAAATCGAGTGCATTTCAGTAATTTC
64 TTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTC
38041542 TCTTTATTAT
Statistics
Matches: 220, Mismatches: 30, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
132 4 0.02
133 181 0.82
134 31 0.14
135 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (133 bp):
ATTTAGATAATTTTACAAATGGGGGTATTTCGATAATTTTACAAATTGAGGGTGTTTTGGTAATT
TTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCAAG
GGT
Found at i:38043638 original size:18 final size:17
Alignment explanation
Indices: 38043615--38043648 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
38043605 TAGCTGTGCC
38043615 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
38043633 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
38043649 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:38044795 original size:25 final size:25
Alignment explanation
Indices: 38044766--38044813 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
38044756 TTATAATATG
* *
38044766 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
38044791 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
38044814 GTTTATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:38044916 original size:20 final size:20
Alignment explanation
Indices: 38044850--38044916 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
38044840 ATTTTGATAA
* *
38044850 ACATGGTATGTATGATATAC
1 ACATGATATGTATGATATGC
*
38044870 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
38044890 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
38044910 ACATGAT
1 ACATGAT
38044917 GTATTTATGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:38045009 original size:23 final size:24
Alignment explanation
Indices: 38044965--38045128 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
38044955 GAGGAAGTGC
38044965 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
38044989 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
38045012 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
38045036 AAAAGAGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
38045060 -AAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
38045082 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
38045105 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
38045129 ATGATAAAGC
Statistics
Matches: 131, Mismatches: 3, Indels: 11
0.90 0.02 0.08
Matches are distributed among these distances:
22 18 0.14
23 48 0.37
24 57 0.44
25 8 0.06
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:38045034 original size:47 final size:48
Alignment explanation
Indices: 38044965--38045128 Score: 257
Period size: 47 Copynumber: 3.5 Consensus size: 48
38044955 GAGGAAGTGC
38044965 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
38045012 AAAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
38045060 -AAA-GGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
38045105 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
38045129 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
45 13 0.12
46 31 0.28
47 44 0.40
48 21 0.19
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:38045125 original size:70 final size:71
Alignment explanation
Indices: 38044965--38045128 Score: 246
Period size: 70 Copynumber: 2.3 Consensus size: 71
38044955 GAGGAAGTGC
* *
38044965 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATTAAAAGGGCTTATGCCCCA
1 AAAAGAGCTTAGGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATTAAAAGGGCTTATGCCCCA
38045030 GTTATT
66 GTTATT
*
38045036 AAAAGAGCTTATGCCCCAGTTATT-AAA-GGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCC
1 AAAAGAGCTTAGGCCCCAGTTATTAAAAGGGCTTATG-CCCAGTTATTAAAAGGGCTTATGCCCC
38045098 AGTTATT
65 AGTTATT
38045105 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGA-GCTTAGGCC-CCAGTTAT
38045129 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
69 32 0.36
70 33 0.38
71 23 0.26
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (71 bp):
AAAAGAGCTTAGGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATTAAAAGGGCTTATGCCCCA
GTTATT
Found at i:38045355 original size:31 final size:31
Alignment explanation
Indices: 38045320--38045383 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
38045310 CGTTTACAGT
38045320 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
38045351 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
38045382 AA
1 AA
38045384 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:38052876 original size:23 final size:23
Alignment explanation
Indices: 38052835--38052879 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
38052825 CTTATATATG
* * *
38052835 AAAATGACCGTTTTGCCCTAGGT
1 AAAATGACCATTATACCCTAGGT
38052858 AAAATGACCATTATACCCTAGG
1 AAAATGACCATTATACCCTAGG
38052880 GTTTATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (23 bp):
AAAATGACCATTATACCCTAGGT
Found at i:38052960 original size:11 final size:11
Alignment explanation
Indices: 38052924--38052979 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
38052914 CATGGTATGT
38052924 ATGATATGCAC
1 ATGATATGCAC
* *
38052935 ATGACATG--T
1 ATGATATGCAC
38052944 ATGATATGCAC
1 ATGATATGCAC
38052955 ATGATATG-A-
1 ATGATATGCAC
*
38052964 ATGACATGCAC
1 ATGATATGCAC
38052975 ATGAT
1 ATGAT
38052980 GTATTTATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:38052979 original size:20 final size:20
Alignment explanation
Indices: 38052913--38052979 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
38052903 ATTTTGATAA
*
38052913 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
38052933 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
38052953 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
38052973 ACATGAT
1 ACATGAT
38052980 GTATTTATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:38053095 original size:23 final size:24
Alignment explanation
Indices: 38053026--38053120 Score: 137
Period size: 23 Copynumber: 4.1 Consensus size: 24
38053016 GAGGAAGTGC
38053026 AAAAGGGCTTATGCCCAGTTATT-
1 AAAAGGGCTTATGCCCAGTTATTA
*
38053049 -AAAGGGCTTATGCCCAGAGT-TTA
1 AAAAGGGCTTATGCCCAG-TTATTA
38053072 AAAAGGGCTT-TGCCCAGTTATTA
1 AAAAGGGCTTATGCCCAGTTATTA
38053095 AAAAGGGCTT-TGCCCAGTTATTA
1 AAAAGGGCTTATGCCCAGTTATTA
38053118 AAA
1 AAA
38053121 GAGGCTAGGC
Statistics
Matches: 66, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
22 20 0.30
23 37 0.56
24 9 0.14
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCAGTTATTA
Found at i:38053126 original size:23 final size:24
Alignment explanation
Indices: 38053026--38053139 Score: 111
Period size: 23 Copynumber: 5.0 Consensus size: 24
38053016 GAGGAAGTGC
38053026 AAAAG-GGCTTATGCCCAGTTATT
1 AAAAGAGGCTTATGCCCAGTTATT
*
38053049 -AAAG-GGCTTATGCCCAGAGT-TT
1 AAAAGAGGCTTATGCCCAG-TTATT
38053071 AAAA-AGGGCTT-TGCCCAGTTATT
1 AAAAGA-GGCTTATGCCCAGTTATT
38053094 AAAA-AGGGCTT-TGCCCAGTTATT
1 AAAAGA-GGCTTATGCCCAGTTATT
*
38053117 AAAAGAGGC-TAGGCTCCAGTTAT
1 AAAAGAGGCTTATGC-CCAGTTAT
38053140 ATGATAAAGC
Statistics
Matches: 80, Mismatches: 3, Indels: 15
0.82 0.03 0.15
Matches are distributed among these distances:
22 21 0.26
23 45 0.56
24 14 0.17
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAAGAGGCTTATGCCCAGTTATT
Found at i:38053136 original size:47 final size:45
Alignment explanation
Indices: 38053026--38053139 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 45
38053016 GAGGAAGTGC
*
38053026 AAAAGGGCTTATGCCCAGTTATTAAAGGGCTTATGCCCAGAGTTTA
1 AAAAGGGC-TAGGCCCAGTTATTAAAGGGCTTATGCCCAGAGTTTA
** *
38053072 AAAAGGGCTTTGCCCAGTTATTAAAAAGGGCTT-TGCCC--AGTTATT
1 AAAAGGGCTAGGCCCAGTTATT--AAAGGGCTTATGCCCAGAGTT-TA
38053117 AAAAGAGGCTAGGCTCCAGTTAT
1 AAAAG-GGCTAGGC-CCAGTTAT
38053140 ATGATAAAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
44 4 0.07
45 19 0.32
46 19 0.32
47 17 0.29
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (45 bp):
AAAAGGGCTAGGCCCAGTTATTAAAGGGCTTATGCCCAGAGTTTA
Found at i:38053384 original size:30 final size:31
Alignment explanation
Indices: 38053324--38053386 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
38053314 CGTTTACAGT
38053324 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
38053355 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
38053385 AA
1 AA
38053387 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:38059564 original size:40 final size:40
Alignment explanation
Indices: 38059519--38059676 Score: 201
Period size: 40 Copynumber: 4.0 Consensus size: 40
38059509 CGGAATACAA
*
38059519 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** *
38059559 CCGGATATAACGACTTGCAAAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
38059599 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** *
38059639 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTA
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTA
38059677 ACCTAGATAT
Statistics
Matches: 102, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
39 2 0.02
40 100 0.98
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:38059695 original size:40 final size:39
Alignment explanation
Indices: 38059519--38059726 Score: 168
Period size: 40 Copynumber: 5.2 Consensus size: 39
38059509 CGGAATACAA
*
38059519 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCAC-AATGCCTTCGGGTCTTAGC
* * * *
38059559 CCGGATATAACGACTTGCAAAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGC-ACAATGCCTTCGGGTCTTAGC
* *
38059599 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
38059639 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTAGCACAA-TGCCTTCGGGTCTTAGC
** ** * * * * *
38059679 CTAGATATAATTACTAGAATAAATGTCTTCAGGACTTAGC
1 CCGGATATAACAACTAGCA-CAATGCCTTCGGGTCTTAGC
38059719 CCGGATAT
1 CCGGATAT
38059727 CATTCAATTG
Statistics
Matches: 136, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
39 3 0.02
40 129 0.95
41 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:38061495 original size:47 final size:46
Alignment explanation
Indices: 38061350--38061510 Score: 143
Period size: 47 Copynumber: 3.4 Consensus size: 46
38061340 GACGAGGGCT
* * *
38061350 AGTGTAAGACATGTTTGGGACATGCATCAGCCAT-ACTA-TGATACCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TGAC-AGAGATAGCC
* * * *
38061396 AATGTAAGACCATGTCTGGGACATGGA--A-CCGGCACAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCTG-ACAGAGAT-A--GCC
38061444 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-GACAGAGATAGCC
*
38061491 AGTGTAAGACGTGTCTGGGA
1 AGTGTAAGACATGTCTGGGA
38061511 TACACATCGG
Statistics
Matches: 92, Mismatches: 12, Indels: 21
0.74 0.10 0.17
Matches are distributed among these distances:
44 3 0.03
45 6 0.07
46 9 0.10
47 52 0.57
48 9 0.10
49 2 0.02
50 10 0.11
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTGACAGAGATAGCC
Found at i:38061506 original size:94 final size:91
Alignment explanation
Indices: 38061347--38061565 Score: 232
Period size: 94 Copynumber: 2.4 Consensus size: 91
38061337 CCAGACGAGG
* *
38061347 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCATACTATGATACCCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTAAGATACCCAATGTAAGACCATGTC
**
38061412 TGGGACATGGA-ACCGGC-ACAGAGATGAGT
66 TGGG--ATACACACCGGCTA-AGAG-T-AGT
* * *
38061441 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGAC-AGAGATAGCCAGTGTAAGA-CGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTA-AGATACCCAATGTAAGACCAT
* *
38061503 GTCTGGGATACACATCGGCTAAGAGTTGT
63 GTCTGGGATACACACCGGCTAAGAGTAGT
* *
38061532 GCTAGTGTAAGACATGGCTAGGACATGCATCAGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
38061566 ACGCGTATAT
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
91 34 0.31
92 4 0.04
93 10 0.09
94 45 0.41
95 16 0.15
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTAAGATACCCAATGTAAGACCATGTC
TGGGATACACACCGGCTAAGAGTAGT
Found at i:38064749 original size:27 final size:27
Alignment explanation
Indices: 38064721--38064982 Score: 228
Period size: 27 Copynumber: 9.7 Consensus size: 27
38064711 CCTCACATAG
* * *
38064721 GGGCAAAACAGTCAATTTACCATGTAG
1 GGGCAAAACAGTCATTTTACCATATAA
** * **
38064748 GGGCATTTA-AGTTATTTTACCACGTAA
1 GGGCA-AAACAGTCATTTTACCATATAA
*
38064775 GGGCAAAACAGTCATTTTACC-TCATAC
1 GGGCAAAACAGTCATTTTACCAT-ATAA
* *
38064802 GGGAAAAACAATCATTTTACC-TCATAA
1 GGGCAAAACAGTCATTTTACCAT-ATAA
* *
38064829 GGGCAAAACAATCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCATATAA
* * *
38064856 GGGGAAAATAGTCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCATATAA
* *
38064883 GGGCAAAATAATCA-TTTACCATATAA
1 GGGCAAAACAGTCATTTTACCATATAA
* *
38064909 GGGCAAAATAGTCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCATATAA
* * *
38064936 GGGCAAATATTAGTTATTTTACCACATAA
1 GGGCAAA-A-CAGTCATTTTACCATATAA
*
38064965 GGGC-AAATAGTCATTTTA
1 GGGCAAAACAGTCATTTTA
38064983 TTAATTTGAG
Statistics
Matches: 201, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
26 35 0.17
27 140 0.70
28 4 0.02
29 22 0.11
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTTACCATATAA
Found at i:38064819 original size:54 final size:54
Alignment explanation
Indices: 38064761--38064982 Score: 261
Period size: 54 Copynumber: 4.1 Consensus size: 54
38064751 CATTTAAGTT
* * * * *
38064761 ATTTTACCACGTAAGGGCAAAACAGTCATTTTACCTCATACGGGAAAAACAATC
1 ATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAGGGAAAAATAGTC
* * *
38064815 ATTTTACCTCATAAGGGCAAAACAATCATTTTACCACATAAGGGGAAAATAGTC
1 ATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAGGGAAAAATAGTC
* *
38064869 ATTTTACCACATAAGGGCAAAATAATCA-TTTACCAT-ATAAGGGCAAAATAGTC
1 ATTTTACCACATAAGGGCAAAACAATCATTTTACC-TCATAAGGGAAAAATAGTC
* * * * *
38064922 ATTTTACCACATAAGGGCAAATATTAGTTATTTTACCACATAAGGG-CAAATAGTC
1 ATTTTACCACATAAGGGCAAA-A-CAATCATTTTACCTCATAAGGGAAAAATAGTC
38064977 ATTTTA
1 ATTTTA
38064983 TTAATTTGAG
Statistics
Matches: 147, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
53 43 0.29
54 73 0.50
55 18 0.12
56 13 0.09
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (54 bp):
ATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAGGGAAAAATAGTC
Found at i:38067054 original size:43 final size:43
Alignment explanation
Indices: 38067001--38067094 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
38066991 TCTTACTCGA
* *
38067001 AATCAAATAATAAGGCCAATGTCCTAGACATAGTCTTACACAT
1 AATCACATAATAAGGCCAATGTCCCAGACATAGTCTTACACAT
* * * * *
38067044 AATCACATAATGATGCCAATGTCCCAGCCATGGTCTTACATAT
1 AATCACATAATAAGGCCAATGTCCCAGACATAGTCTTACACAT
38067087 AATCACAT
1 AATCACAT
38067095 CTCGTTAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (43 bp):
AATCACATAATAAGGCCAATGTCCCAGACATAGTCTTACACAT
Found at i:38074270 original size:37 final size:37
Alignment explanation
Indices: 38074220--38074290 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
38074210 CGAAGTCTTA
38074220 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
38074257 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
38074291 TCACCCGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.21
Consensus pattern (37 bp):
CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
Found at i:38074440 original size:49 final size:49
Alignment explanation
Indices: 38074373--38074983 Score: 1042
Period size: 49 Copynumber: 12.4 Consensus size: 49
38074363 TTTACCACAT
* *
38074373 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
38074422 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
38074471 ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
38074520 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
38074569 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
38074618 ATATATATACACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATAT--ACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
38074669 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
38074718 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
38074767 ATATATATATACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
38074816 ATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC
38074867 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
38074916 ATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
38074965 ATATGTATACATTTTCACA
1 ATATATATACATTTTCACA
38074984 AATTTTGATA
Statistics
Matches: 535, Mismatches: 23, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
49 439 0.82
51 96 0.18
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:38074804 original size:247 final size:247
Alignment explanation
Indices: 38074353--38074983 Score: 1093
Period size: 247 Copynumber: 2.6 Consensus size: 247
38074343 ATTCACATTA
* * * * *
38074353 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * *
38074418 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC-C
66 TCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACAC
*
38074482 TTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCAC
131 -TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
*
38074547 ATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
195 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
38074600 GCCATTAGGCCTTATCACATATATATACACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
38074665 TCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACAC
66 TCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACAC
* *
38074730 TTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATATACTTTCACATTCATCACA
131 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
38074795 TTGGCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATCACATCG
196 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
38074847 GCCATTAGGCCTTATCACACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
38074912 TCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACAT
66 TCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACAC
38074977 TTTCACA
131 TTTCACA
38074984 AATTTTGATA
Statistics
Matches: 365, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
247 364 1.00
248 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (247 bp):
GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:38085802 original size:48 final size:48
Alignment explanation
Indices: 38085725--38086105 Score: 370
Period size: 48 Copynumber: 7.9 Consensus size: 48
38085715 AGTGTTTCGT
* * *
38085725 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATGA
* * * *
38085773 GAGCTAGTGTAAGACCATATCTGGGACATGGCATCGGCCTCGATATGT
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATGA
* * * * * *
38085821 GATCCAATGTAAGACCATGTTTAGAACATGGCATCGGCATTGATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATGA
* * ** *
38085869 GAGCTGGTGTAAAACCATGTCCGGGACATGGCATCGGCCTCGATATGTA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATG-A
* * * *
38085918 -AGCTAGTGTAAGACCGTGTTTGAGTCATGGCATCGGCATTGATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATGA
* * * *
38085965 GAGCTAGTGTGAGACCATGTTTGGGACATGGCATTGACACCGATATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCG--ATATGA
* * * *
38086015 GAGAC-AGTGTATGACCATGTTTGGAACATGGCATCGACATGGATATATGA
1 GAG-CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCG--ATATGA
** * * * *
38086065 GAGCCCGTGTATGACCATGTCTGGGCCATGGCATTGGCATC
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
38086106 TCACCCTTTT
Statistics
Matches: 269, Mismatches: 58, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
47 1 0.00
48 185 0.69
49 2 0.01
50 80 0.30
51 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATATGA
Found at i:38085896 original size:96 final size:96
Alignment explanation
Indices: 38085723--38086098 Score: 468
Period size: 96 Copynumber: 3.9 Consensus size: 96
38085713 CTAGTGTTTC
38085723 GTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGAC
1 GTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGAC
*
38085788 CATATCTGGGACATGGCATCGGCCTCGATAT
66 CATGTCTGGGACATGGCATCGGCCTCGATAT
* * * * *
38085819 GTGATCCAATGTAAGACCATGTTTAGAACATGGCATCGGCATTGATATGAGAGCTGGTGTAAAAC
1 GTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGAC
*
38085884 CATGTCCGGGACATGGCATCGGCCTCGATAT
66 CATGTCTGGGACATGGCATCGGCCTCGATAT
* * * * *
38085915 GTAAGCTAGTGTAAGACCGTGTTT-GAGTCATGGCATCGGCATTGATATGAGAGCTAGTGTGAGA
1 GTGAGCCAGTGTAAGACCATGTTTGGA-ACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGA
* * *
38085979 CCATGTTTGGGACATGGCATTGACAC-CGATATAT
65 CCATGTCTGGGACATGGCATCGGC-CTCG--ATAT
* * * * * ** *
38086013 GAGAGACAGTGTATGACCATGTTTGGAACATGGCATCGACATGGATATATGAGAGCCCGTGTATG
1 GTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--ATATGAGAGCTAGTGTAAG
*
38086078 ACCATGTCTGGGCCATGGCAT
64 ACCATGTCTGGGACATGGCAT
38086099 TGGCATCTCA
Statistics
Matches: 238, Mismatches: 35, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
95 2 0.01
96 163 0.68
97 1 0.00
98 36 0.15
99 2 0.01
100 34 0.14
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
GTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGAC
CATGTCTGGGACATGGCATCGGCCTCGATAT
Found at i:38086031 original size:50 final size:49
Alignment explanation
Indices: 38085959--38086100 Score: 178
Period size: 50 Copynumber: 2.8 Consensus size: 49
38085949 ATCGGCATTG
38085959 ATATGAGAGCTAGTGTGA-GACCATGTTTGGGACATGGCATTGACACCGAT
1 ATATGAGAGC-AGTGT-ATGACCATGTTTGGGACATGGCATTGACACCGAT
* * **
38086009 ATATGAGAGACAGTGTATGACCATGTTTGGAACATGGCATCGACATGGAT
1 ATATGAGAG-CAGTGTATGACCATGTTTGGGACATGGCATTGACACCGAT
* * *
38086059 ATATGAGAGCCCGTGTATGACCATGTCTGGGCCATGGCATTG
1 ATATGAGAG-CAGTGTATGACCATGTTTGGGACATGGCATTG
38086101 GCATCTCACC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
49 1 0.01
50 78 0.98
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (49 bp):
ATATGAGAGCAGTGTATGACCATGTTTGGGACATGGCATTGACACCGAT
Found at i:38088325 original size:27 final size:27
Alignment explanation
Indices: 38088294--38088388 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
38088284 TTAGTTTACC
** *
38088294 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
* **
38088321 AAATTA-CCAAAGTACCCCCGATTTACA
1 AAATTACCCAAA-TACCCTCGATTTGTA
*
38088348 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCCAAATACCCTCGATTTGTA
*
38088375 AAATTACCGAAATA
1 AAATTACCCAAATA
38088389 AGATAGAATT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
26 3 0.05
27 47 0.85
28 5 0.09
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCGATTTGTA
Found at i:38088425 original size:27 final size:27
Alignment explanation
Indices: 38088395--38088563 Score: 194
Period size: 27 Copynumber: 6.3 Consensus size: 27
38088385 AATAAGATAG
*
38088395 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
* * *
38088422 AATTATCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAA
*
38088449 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
*
38088476 AATTACCGTTTTACCCTCGATTTACAT
1 AATTACCGTTTTACCCTCGATTTACAA
* ** *
38088503 AATTACCGTTTTATCCTTAATTTTCAA
1 AATTACCGTTTTACCCTCGATTTACAA
* *** * *
38088530 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
38088557 AATTACC
1 AATTACC
38088564 AAAATACCTT
Statistics
Matches: 118, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAA
Found at i:38088449 original size:54 final size:54
Alignment explanation
Indices: 38088391--38088535 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
38088381 CCGAAATAAG
*
38088391 ATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
38088445 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
* * * * ** *
38088499 ACATAATTACCGTTTTATCCTTAATTTTCAAAATTAC
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTAC
38088536 TGAAATACCC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
Found at i:38088568 original size:27 final size:27
Alignment explanation
Indices: 38088527--38088618 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
38088517 CCTTAATTTT
**
38088527 CAAAATTACTGAAATACCCTTGGTTTA
1 CAAAATTACCAAAATACCCTTGGTTTA
* **
38088554 CAAAATTACCAAAATA-CCTTCGATCAA
1 CAAAATTACCAAAATACCCTT-GGTTTA
* * *
38088581 TAAAATTACCAAAATACCCCTGGTTTG
1 CAAAATTACCAAAATACCCTTGGTTTA
*
38088608 TAAAATTACCA
1 CAAAATTACCA
38088619 TTTTGCCCCT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 4 0.08
27 45 0.87
28 3 0.06
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
CAAAATTACCAAAATACCCTTGGTTTA
Found at i:38089054 original size:6 final size:6
Alignment explanation
Indices: 38089016--38089093 Score: 54
Period size: 6 Copynumber: 12.7 Consensus size: 6
38089006 ATTCACATTT
* * * *
38089016 TGATTT TGATTC TG-TTACC TGATAC TAATTC TGATTC TGATTC TG-TCACC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGAT--TC
38089066 TGATTC TGATTC TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGA-TTC TGAT
38089094 AATGTTTCTT
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
5 4 0.07
6 44 0.77
7 7 0.12
8 2 0.04
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
TGATTC
Found at i:38089091 original size:31 final size:31
Alignment explanation
Indices: 38089016--38089084 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
38089006 ATTCACATTT
* *
38089016 TGATTTTGATTCTGTTACCTGATACTAATTC
1 TGATTCTGATTCTGTCACCTGATACTAATTC
* *
38089047 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATACTAATTC
38089078 TGATTCT
1 TGATTCT
38089085 AGTTCTGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTAATTC
Found at i:38094857 original size:40 final size:39
Alignment explanation
Indices: 38094788--38094874 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 39
38094778 TGTTCGACAT
38094788 TAAGTGTGCGATTCAAACAGCTTCGGCTATA-AATCGCAC
1 TAAGTGTGCGATTCAAACAGCTTCGGCTATATAA-CGCAC
** * * *
38094827 TAAGTGTGCGAGTTGGAATAGCTTTGGCTATATAAGGCAC
1 TAAGTGTGCGA-TTCAAACAGCTTCGGCTATATAACGCAC
38094867 TAAGTGTG
1 TAAGTGTG
38094875 TGATACCAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 11 0.27
40 28 0.68
41 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (39 bp):
TAAGTGTGCGATTCAAACAGCTTCGGCTATATAACGCAC
Found at i:38108330 original size:19 final size:19
Alignment explanation
Indices: 38108301--38108344 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
38108291 CAACAGACAT
**
38108301 AAAACTCTTGACATGGCATG
1 AAAA-TCTTGACATGAAATG
*
38108321 AAAATCTTGAGATGAAATG
1 AAAATCTTGACATGAAATG
38108340 AAAAT
1 AAAAT
38108345 GACTTGAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.25
Consensus pattern (19 bp):
AAAATCTTGACATGAAATG
Found at i:38115622 original size:30 final size:30
Alignment explanation
Indices: 38115586--38115745 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
38115576 GACAAGATTG
* * * * *
38115586 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
38115616 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
38115644 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
38115673 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
38115703 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
38115732 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
38115746 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:38115713 original size:59 final size:57
Alignment explanation
Indices: 38115586--38115745 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
38115576 GACAAGATTG
* * * * * *
38115586 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
38115644 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
38115703 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
38115746 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:38117356 original size:70 final size:70
Alignment explanation
Indices: 38117243--38117384 Score: 257
Period size: 70 Copynumber: 2.0 Consensus size: 70
38117233 AAAATTAAGG
* *
38117243 GATTTGTTTATCTAAACTAGTTAACTAAACTAAAGGTGCACAGAAAGAAAATTAGGAAAAGCTTT
1 GATTTGTTTATCTAAACTAATTAACTAAACTAAAGGTGCACAGAAACAAAATTAGGAAAAGCTTT
38117308 TGGGA
66 TGGGA
*
38117313 GATTTGTTTATCTAAACTAATTAACTAAACTAAGGGTGCACAGAAACAAAATTAGGAAAAGCTTT
1 GATTTGTTTATCTAAACTAATTAACTAAACTAAAGGTGCACAGAAACAAAATTAGGAAAAGCTTT
38117378 TGGGA
66 TGGGA
38117383 GA
1 GA
38117385 ACTCGATTGA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.28
Consensus pattern (70 bp):
GATTTGTTTATCTAAACTAATTAACTAAACTAAAGGTGCACAGAAACAAAATTAGGAAAAGCTTT
TGGGA
Found at i:38121891 original size:28 final size:28
Alignment explanation
Indices: 38121858--38121916 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
38121848 ATTGCATGAC
38121858 TATGAATATGATT-GAGCCTGATGGGCCA
1 TATGAATATGATTGGAGCC-GATGGGCCA
*
38121886 TATGAATGTGATTGGAGCCGATGGGCCA
1 TATGAATATGATTGGAGCCGATGGGCCA
38121914 TAT
1 TAT
38121917 AAATGAGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
TATGAATATGATTGGAGCCGATGGGCCA
Found at i:38121921 original size:28 final size:29
Alignment explanation
Indices: 38121866--38121932 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 29
38121856 ACTATGAATA
*
38121866 TGATT-GAGCCTGATGGGCCATATGAATG
1 TGATTGGAGCCTGATGGGCCATATAAATG
38121894 TGATTGGAGCC-GATGGGCCATATAAATG
1 TGATTGGAGCCTGATGGGCCATATAAATG
*
38121922 AGATTGG-GCCT
1 TGATTGGAGCCT
38121933 AAAGGGGCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 3 0.09
28 27 0.77
29 5 0.14
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
TGATTGGAGCCTGATGGGCCATATAAATG
Found at i:38122629 original size:11 final size:11
Alignment explanation
Indices: 38122613--38122638 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
38122603 ATTGCATGTA
38122613 TGATATTATTG
1 TGATATTATTG
38122624 TGATATTATTG
1 TGATATTATTG
38122635 TGAT
1 TGAT
38122639 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:38126115 original size:1 final size:1
Alignment explanation
Indices: 38126104--38126133 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
38126094 CTTTTGACTC
*
38126104 TTTTGTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
38126134 GCAAATACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:38127177 original size:28 final size:28
Alignment explanation
Indices: 38127126--38127217 Score: 114
Period size: 28 Copynumber: 3.2 Consensus size: 28
38127116 ATTGCATGAC
38127126 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
38127154 TATTAATGTGATTAGGGCC-GATGGGCCA
1 TATGAATGTGATT-GGGCCTAATGGGCCA
* *
38127182 TATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
38127211 AATGAAT
1 TATGAAT
38127218 AAGTGTGGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
27 5 0.09
28 31 0.57
29 18 0.33
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:38132608 original size:29 final size:29
Alignment explanation
Indices: 38132584--38132706 Score: 228
Period size: 29 Copynumber: 4.2 Consensus size: 29
38132574 TCGCACACCC
* *
38132584 AGTGCCGTATATTTCCAACATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
38132613 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
38132642 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
38132671 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
38132700 AGTGCCA
1 AGTGCCA
38132707 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:38132609 original size:58 final size:58
Alignment explanation
Indices: 38132547--38132706 Score: 187
Period size: 58 Copynumber: 2.8 Consensus size: 58
38132537 ATTTAAGCCC
* * * *
38132547 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAACAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAACAT
* * ** *
38132605 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAACAT
* * **
38132663 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCA
38132707 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
58 91 0.99
59 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAACAT
Found at i:38132612 original size:87 final size:87
Alignment explanation
Indices: 38132518--38132706 Score: 220
Period size: 87 Copynumber: 2.2 Consensus size: 87
38132508 ACTCGATTTC
* * * *
38132518 GCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-TCGCACA
1 GCACACTTAGTGCCAT-AGATTTCAAGCACGCACACATAGTGCCATACACTTCCAGCAT-GCACA
*
38132581 CCCAGTGCCGTATATTTCCAACAT
64 CCCAGTGCCATATATTTCCAACAT
* * * * * * *
38132605 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
1 GCACACTTAGTGCCATAGATTTCAAGCACGCACACATAGTGCCATACACTTCCAGCATGCACACC
* *
38132670 TAGTGCCATATATTTCCAGCAT
66 CAGTGCCATATATTTCCAACAT
38132692 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
38132707 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 4 0.05
87 81 0.94
88 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (87 bp):
GCACACTTAGTGCCATAGATTTCAAGCACGCACACATAGTGCCATACACTTCCAGCATGCACACC
CAGTGCCATATATTTCCAACAT
Found at i:38135922 original size:55 final size:54
Alignment explanation
Indices: 38135835--38136091 Score: 230
Period size: 55 Copynumber: 4.9 Consensus size: 54
38135825 ATTAGGGTTT
* * *
38135835 AAGGATACCGTGTAAGACCATAACAAGGCATGGCAATTGGTAAGGTCTCTAAGG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGGTCTCTAAGG
* * * * * *
38135889 TAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGGT-CTCTAAGG
* * * *
38135944 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GT-TCATAAGG
1 --AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGGTCTC-TAAGG
* *
38135997 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAA-GTTTC-AA--
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGGTCTCTAAGG
* *
38136047 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGGT
38136092 ACCCGCGTAT
Statistics
Matches: 168, Mismatches: 27, Indels: 19
0.79 0.13 0.09
Matches are distributed among these distances:
49 39 0.23
50 2 0.01
52 7 0.04
53 38 0.23
54 13 0.08
55 65 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGGTCTCTAAGG
Found at i:38136041 original size:108 final size:110
Alignment explanation
Indices: 38135845--38136042 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
38135835 AAGGATACCG
* *
38135845 TGTAAGACCATAACAAGGCATGGCAATTGGTAAGGTCTCTAAGGTAAGGAAATCATGTAAGACCA
1 TGTAAGACCATAACAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCA
*
38135910 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
** * *
38135955 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GT-TCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATAACAAGGCATGGCAATTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAGACC
*
38136017 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
38136043 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 2 0.03
108 48 0.61
109 7 0.09
110 22 0.28
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATAACAAGGCATGGCAATTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:38136302 original size:16 final size:16
Alignment explanation
Indices: 38136281--38136311 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38136271 ATAAATTTGA
38136281 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
38136297 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
38136312 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:38144156 original size:31 final size:30
Alignment explanation
Indices: 38144092--38144164 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
38144082 GTTTACAGTG
* *
38144092 AAGGCTTCGACCCAGTGATATGATAATGAA
1 AAGGCTTCGGCCCAGTGACATGATAATGAA
*
38144122 AAGGCTTCGGCCCAGTGACATGAATAATGCA
1 AAGGCTTCGGCCCAGTGACATG-ATAATGAA
38144153 AAGGCTTCGGCC
1 AAGGCTTCGGCC
38144165 TAGTATATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 20 0.51
31 19 0.49
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.21
Consensus pattern (30 bp):
AAGGCTTCGGCCCAGTGACATGATAATGAA
Found at i:38148543 original size:28 final size:28
Alignment explanation
Indices: 38148482--38148555 Score: 114
Period size: 27 Copynumber: 2.7 Consensus size: 28
38148472 ATTGCATGAC
38148482 TATGAATGTGATTGGGCCTGATAGGCCA
1 TATGAATGTGATTGGGCCTGATAGGCCA
* *
38148510 T-TGAATGTGATTGGGGCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATAGGCCA
*
38148537 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
38148556 AAAGGGGCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 25 0.61
28 16 0.39
ACGTcount: A:0.23, C:0.12, G:0.35, T:0.30
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATAGGCCA
Found at i:38149031 original size:20 final size:20
Alignment explanation
Indices: 38149006--38149046 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
38148996 GGCTGGAAAT
38149006 TATGGAACGGAGGATGTATA
1 TATGGAACGGAGGATGTATA
38149026 TATGGAACGGAGGATGTATA
1 TATGGAACGGAGGATGTATA
38149046 T
1 T
38149047 GAGGATCGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.34, T:0.27
Consensus pattern (20 bp):
TATGGAACGGAGGATGTATA
Found at i:38151019 original size:31 final size:31
Alignment explanation
Indices: 38150984--38151046 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
38150974 TAGTTGAACA
38150984 TAAACATGAAACCATTTCTCATATGTTCGAT
1 TAAACATGAAACCATTTCTCATATGTTCGAT
38151015 TAAACATGAAACCATTTCTCATATGTTCGAT
1 TAAACATGAAACCATTTCTCATATGTTCGAT
38151046 T
1 T
38151047 CACATCAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (31 bp):
TAAACATGAAACCATTTCTCATATGTTCGAT
Found at i:38151334 original size:78 final size:79
Alignment explanation
Indices: 38151244--38151447 Score: 270
Period size: 78 Copynumber: 2.5 Consensus size: 79
38151234 GCTAGACCTT
*
38151244 TAAGTCCGATATCATTTCACCGACATTACGCCTGCTAGGCTCGGAGCCCAATAATATTCACTAGC
1 TAAGTCCGATATCATTTCACCGACATTACGCCTGCTAGGCTCGGAGCCCAATAATATTCACCAGC
*
38151309 TTAAAGCTTTCTAG
66 TTAAAGCTTGCTAG
* * *
38151323 -AAGTCCGATATCATTTCACCTG-CATTACGCCTGCAAGGGTCGGGGCCCAATAATATTCACCAG
1 TAAGTCCGATATCATTTCACC-GACATTACGCCTGCTAGGCTCGGAGCCCAATAATATTCACCAG
38151386 CTTAAAGCTTGCTAG
65 CTTAAAGCTTGCTAG
*
38151401 ACCTTTAAGTCCGATATCATTTCACC-AGCATTACACCTGCTAGGCTC
1 -----TAAGTCCGATATCATTTCACCGA-CATTACGCCTGCTAGGCTC
38151448 AAAGCTCGAA
Statistics
Matches: 108, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
78 71 0.66
79 1 0.01
84 36 0.33
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (79 bp):
TAAGTCCGATATCATTTCACCGACATTACGCCTGCTAGGCTCGGAGCCCAATAATATTCACCAGC
TTAAAGCTTGCTAG
Found at i:38158091 original size:49 final size:49
Alignment explanation
Indices: 38158024--38158183 Score: 288
Period size: 49 Copynumber: 3.3 Consensus size: 49
38158014 TACATGATAG
38158024 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
38158073 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
38158124 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
38158173 -A-ATGTGATAAG
1 TATATGTGATAAG
38158184 TCCCGAAGGG
Statistics
Matches: 109, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
47 10 0.09
48 1 0.01
49 49 0.45
51 49 0.45
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:38158145 original size:51 final size:51
Alignment explanation
Indices: 38158024--38158172 Score: 284
Period size: 51 Copynumber: 3.0 Consensus size: 51
38158014 TACATGATAG
38158024 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
38158073 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
38158124 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
38158173 AATGTGATAA
Statistics
Matches: 98, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
49 45 0.46
51 53 0.54
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (51 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:38166970 original size:22 final size:22
Alignment explanation
Indices: 38166926--38166970 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
38166916 TATTGCTTCT
* *
38166926 ATGGTATCGATATCTCTTTAAA
1 ATGGTATCGATACCTCTTGAAA
38166948 ATGGTATCGATACCATC-TGAAA
1 ATGGTATCGATACC-TCTTGAAA
38166970 A
1 A
38166971 ATCGGTACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (22 bp):
ATGGTATCGATACCTCTTGAAA
Found at i:38169720 original size:25 final size:25
Alignment explanation
Indices: 38169690--38169738 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
38169680 TTATACCATG
* * *
38169690 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
38169715 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
38169739 TTATGTATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:38169805 original size:20 final size:20
Alignment explanation
Indices: 38169780--38169838 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
38169770 TAAATATGGT
38169780 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
38169800 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
38169820 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
38169839 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:38169820 original size:11 final size:11
Alignment explanation
Indices: 38169784--38169838 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
38169774 TATGGTATGT
38169784 ATGATATGCAC
1 ATGATATGCAC
* *
38169795 ATGAAATG--T
1 ATGATATGCAC
38169804 ATGATATGCAC
1 ATGATATGCAC
*
38169815 ATGATATG--T
1 ATGATATGCAC
38169824 ATGATATGCAC
1 ATGATATGCAC
38169835 ATGA
1 ATGA
38169839 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:38169967 original size:23 final size:23
Alignment explanation
Indices: 38169889--38170055 Score: 246
Period size: 24 Copynumber: 7.0 Consensus size: 23
38169879 GAGGAAGTGA
38169889 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
38169912 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
38169936 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
38169960 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
38169983 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
38170007 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
38170031 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
38170055 A
1 A
38170056 TGATAAAGCA
Statistics
Matches: 135, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
23 45 0.33
24 80 0.59
25 10 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:38169982 original size:47 final size:46
Alignment explanation
Indices: 38169889--38170055 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 46
38169879 GAGGAAGTGA
38169889 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
38169936 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
* *
38169983 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTA-T
*
38170031 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
38170056 TGATAAAGCA
Statistics
Matches: 111, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
46 22 0.20
47 44 0.40
48 35 0.32
49 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:38170280 original size:31 final size:31
Alignment explanation
Indices: 38170245--38170339 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
38170235 CGTTTACAGT
38170245 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
38170276 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
38170307 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
38170338 AA
1 AA
38170340 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:38177879 original size:25 final size:25
Alignment explanation
Indices: 38177851--38177898 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
38177841 TTATACCATG
* * *
38177851 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
38177876 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
38177899 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:38177967 original size:20 final size:20
Alignment explanation
Indices: 38177942--38178000 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
38177932 TAAATATGGT
38177942 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
38177962 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
38177982 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
38178001 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:38177982 original size:11 final size:11
Alignment explanation
Indices: 38177946--38178000 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
38177936 TATGGTATGT
38177946 ATGATATGCAC
1 ATGATATGCAC
* *
38177957 ATGAAATG--T
1 ATGATATGCAC
38177966 ATGATATGCAC
1 ATGATATGCAC
*
38177977 ATGATATG--T
1 ATGATATGCAC
38177986 ATGATATGCAC
1 ATGATATGCAC
38177997 ATGA
1 ATGA
38178001 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:38178095 original size:23 final size:23
Alignment explanation
Indices: 38178051--38178216 Score: 237
Period size: 23 Copynumber: 7.0 Consensus size: 23
38178041 GAGGAAGTGA
38178051 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
38178074 CAAAAGGGCTTATG-CCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
38178097 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
38178121 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
38178144 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
38178168 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
38178192 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
38178216 A
1 A
38178217 TGATAAAGCA
Statistics
Matches: 133, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
23 68 0.51
24 55 0.41
25 10 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:38178120 original size:47 final size:46
Alignment explanation
Indices: 38178051--38178216 Score: 237
Period size: 47 Copynumber: 3.5 Consensus size: 46
38178041 GAGGAAGTGA
38178051 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
38178097 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
* *
38178144 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTA-T
*
38178192 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
38178217 TGATAAAGCA
Statistics
Matches: 110, Mismatches: 4, Indels: 9
0.89 0.03 0.07
Matches are distributed among these distances:
46 35 0.32
47 53 0.48
48 12 0.11
49 10 0.09
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:38178441 original size:31 final size:31
Alignment explanation
Indices: 38178406--38178501 Score: 183
Period size: 31 Copynumber: 3.1 Consensus size: 31
38178396 CGTTTACAGT
38178406 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
38178437 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
38178468 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
38178499 AAA
1 AAA
38178502 TGAAAAGGCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 64 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:38184071 original size:27 final size:27
Alignment explanation
Indices: 38184040--38184826 Score: 911
Period size: 27 Copynumber: 29.4 Consensus size: 27
38184030 CCTAAAAGTA
* * *
38184040 GTAAAATGACCATAATACCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184067 GTAAAATGACCATAATGCCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
38184094 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
38184121 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
38184148 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
38184175 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184202 GTAAAACGACCGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * * *
38184229 GTAAAACGACCGTAATACCCTTTTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
38184256 ATAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184283 GTAAAATGA-CGTAATGCTCATGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * *
38184309 GTAAAATGATCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * *
38184336 GTAAAATGACCGCAATGCCCCAGTAGA
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * * *
38184363 GTAAAATGATCGTAAT-ACCCAGTAGA
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * *
38184389 GTAAAATGACCGTACTACCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* ** * * *
38184416 TTAAAATGACTATAATACCCCTATAAG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
38184443 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * *
38184470 GTAAAATGATCGTAATGGCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184497 GTAAAATGACTGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
38184524 GTAAAATGACGGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184551 GTAAAATGACCATAATGCCTCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* * *
38184578 GTAAAAAGATCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *** * *
38184605 GTAAAATGACCGAAATAAGCCTATATG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184632 GTAAAATAACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184659 GTAAAATGACCGTAATGCCCTTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *** * *
38184686 GAAAAATGAGAATAATGCCCTTGTAAG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
38184713 GTAAAATGACTG-AATTCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
38184739 GTAAAAT---CATAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
38184763 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
** ** *
38184790 GTAAAATGACCAAAATAACCCTGTATG
1 GTAAAATGACCGTAATGCCCCTGTAGG
38184817 GTAAAATGAC
1 GTAAAATGAC
38184827 GATTATGCCC
Statistics
Matches: 655, Mismatches: 99, Indels: 12
0.86 0.13 0.02
Matches are distributed among these distances:
24 20 0.03
26 65 0.10
27 570 0.87
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCGTAATGCCCCTGTAGG
Found at i:38185006 original size:27 final size:26
Alignment explanation
Indices: 38184962--38185069 Score: 101
Period size: 27 Copynumber: 4.1 Consensus size: 26
38184952 ATGGAGGAAG
* *
38184962 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
*
38184987 TCACTGTTATTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* *
38185015 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
* ** *
38185042 TACTGTTTCTGGCAGCTATGCTACAT
1 TACTGTTACTGGTGGCTATGCCACAT
38185068 TA
1 TA
38185070 TTATTATTGG
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 8 0.12
27 55 0.82
28 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:38195230 original size:30 final size:29
Alignment explanation
Indices: 38195175--38195306 Score: 214
Period size: 29 Copynumber: 4.6 Consensus size: 29
38195165 ATAGTGAATC
38195175 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
38195204 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
38195234 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
38195263 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
38195291 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
38195307 ATCTTGTCAC
Statistics
Matches: 99, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
27 2 0.02
28 19 0.19
29 49 0.49
30 29 0.29
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:38195267 original size:59 final size:57
Alignment explanation
Indices: 38195175--38195306 Score: 221
Period size: 59 Copynumber: 2.3 Consensus size: 57
38195165 ATAGTGAATC
*
38195175 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
38195234 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
38195291 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
38195307 ATCTTGTCAC
Statistics
Matches: 71, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
56 2 0.03
57 19 0.27
59 50 0.70
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:38203595 original size:28 final size:29
Alignment explanation
Indices: 38203528--38203628 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
38203518 ATAGTGAATC
*
38203528 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
38203557 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
38203585 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
38203615 CGCACACTTAGTGC
1 CGCACACTTAGTGC
38203629 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:38211674 original size:28 final size:29
Alignment explanation
Indices: 38211607--38211707 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
38211597 ATAGTGAATC
*
38211607 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
38211636 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
38211664 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
38211694 CGCACACTTAGTGC
1 CGCACACTTAGTGC
38211708 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:38216399 original size:68 final size:66
Alignment explanation
Indices: 38216327--38216498 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
38216317 CATCATGTGT
* * * *
38216327 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
38216390 TGTAG
62 TGTAG
** * *
38216395 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
38216460 AG
65 AG
* * * *
38216462 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
38216499 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:38216432 original size:64 final size:64
Alignment explanation
Indices: 38216351--38216534 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
38216341 AGACATTATG
* * *
38216351 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
38216415 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
38216480 AA
63 AA
* * *
38216482 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
38216535 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:38219337 original size:68 final size:66
Alignment explanation
Indices: 38219265--38219436 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
38219255 CATCATGTGT
* * * *
38219265 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
38219328 TGTAG
62 TGTAG
** * *
38219333 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
38219398 AG
65 AG
* * * *
38219400 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
38219437 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:38219370 original size:64 final size:64
Alignment explanation
Indices: 38219289--38219472 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
38219279 AGACATTATG
* * *
38219289 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
38219353 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
38219418 AA
63 AA
* * *
38219420 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
38219473 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:38221623 original size:48 final size:48
Alignment explanation
Indices: 38221505--38221729 Score: 306
Period size: 48 Copynumber: 4.7 Consensus size: 48
38221495 ATGAGATCCC
* * * * * *
38221505 GTGTAAGACCATGTCTGGGACATGGCGTCGGCATCCGAGATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGT-TGATATGTGTGCCA
* *
38221554 GTGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
*
38221602 GTGTAAGACCATGTCTGGGACATGGCATCGGCTTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
* * * * *
38221650 GTGTAAGATCATGTTTGGGACATGGCATTGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
*
38221698 GTGTAAGACCATGTCTGGGACATTGCATCGGC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC
38221730 ACCGATATGA
Statistics
Matches: 155, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
48 124 0.80
49 31 0.20
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
Found at i:38221753 original size:96 final size:96
Alignment explanation
Indices: 38221505--38221740 Score: 346
Period size: 96 Copynumber: 2.4 Consensus size: 96
38221495 ATGAGATCCC
* *
38221505 GTGTAAGACCATGTCTGGGACATGGCGTCGGCATCCGAGATGAGAGCCAGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-CCGATATGAGAGCCAGTGTAAGACCATGTCT
*
38221570 AGGACATGGCATCGGCGTTGATATGTGTGCTA
65 AGGACATGGCATCGGCGATGATATGTGTGCTA
*** * * * * *
38221602 GTGTAAGACCATGTCTGGGACATGGCATCGGCTTTGATATGTGTGCCAGTGTAAGATCATGTTTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGAGCCAGTGTAAGACCATGTCTA
*
38221667 GGACATGGCATTGGCGATGATATGTGTGCTA
66 GGACATGGCATCGGCGATGATATGTGTGCTA
*
38221698 GTGTAAGACCATGTCTGGGACATTGCATCGGCACCGATATGAG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAG
38221741 GCTTCGTATA
Statistics
Matches: 122, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
96 91 0.75
97 31 0.25
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGAGCCAGTGTAAGACCATGTCTA
GGACATGGCATCGGCGATGATATGTGTGCTA
Found at i:38225290 original size:40 final size:39
Alignment explanation
Indices: 38225179--38225329 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
38225169 TATAACATGT
* ** *
38225179 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
38225219 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
38225259 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
38225299 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
38225330 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:38225313 original size:80 final size:79
Alignment explanation
Indices: 38225179--38225329 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
38225169 TATAACATGT
*
38225179 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
38225244 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
38225259 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
38225322 CCGGATAT
64 CCGGATAT
38225330 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:38233240 original size:40 final size:39
Alignment explanation
Indices: 38233129--38233279 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
38233119 TATAACATGT
* ** *
38233129 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
38233169 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
38233209 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
38233249 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
38233280 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Done.