Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 152 of 770
Found at i:44701981 original size:40 final size:39
Alignment explanation
Indices: 44701769--44701997 Score: 205
Period size: 40 Copynumber: 5.8 Consensus size: 39
44701759 GGATATAGCC
* *
44701769 ACTAGCTCAAATGCCTTCGGGACTTAGCCC--AGTTATGGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA--G-A
* * * *
44701809 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTATAATA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGA
* * *
44701848 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGA
* *
44701888 GCTAGCACAAACGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG-A
* * * * *
44701928 GCTCGCACGAATGCCTTCAGGACTTAGCCCGGAATTAGCC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG-A
*
44701968 ACTAGCTCAAATG-CTCTCGGGACTTAGCCC
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCC
44701998 AGTTATCATC
Statistics
Matches: 158, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 35 0.22
40 117 0.74
41 2 0.01
42 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGA
Found at i:44703701 original size:23 final size:23
Alignment explanation
Indices: 44703675--44703725 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
44703665 TTTAGGGCTG
*
44703675 TCGTCTTAAGTTGTTGTACATTT
1 TCGTCTTAAGTCGTTGTACATTT
44703698 TCGTCTTAAGTCGTTGTACATTT
1 TCGTCTTAAGTCGTTGTACATTT
44703721 TCGTC
1 TCGTC
44703726 CAGATGCAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.49
Consensus pattern (23 bp):
TCGTCTTAAGTCGTTGTACATTT
Found at i:44709084 original size:40 final size:40
Alignment explanation
Indices: 44709032--44709216 Score: 255
Period size: 40 Copynumber: 4.7 Consensus size: 40
44709022 GCCACTAGCT
* * ** *
44709032 CAAATGCCTTCGGGACTTAGCCCAGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
44709072 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* *
44709111 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
44709151 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* *
44709191 CGAATGCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
44709217 ATTAGCCACT
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 36 0.27
40 96 0.73
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:44709130 original size:79 final size:80
Alignment explanation
Indices: 44709032--44709213 Score: 258
Period size: 79 Copynumber: 2.3 Consensus size: 80
44709022 GCCACTAGCT
* ** * *
44709032 CAAATGCCTTCGGGACTTAGCCCAGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCAGATATAATAACTAGCACAAACGCCTTCGGGACTTAGCCCGG
44709097 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
44709111 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTAGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCAGATATAATAACTAGCACAAACGCCTTCGGGACTTAGCCCGG
* *
44709176 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
* *
44709191 CGAATGCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
44709214 GGAATTAGCC
Statistics
Matches: 91, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 58 0.64
80 33 0.36
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCAGATATAATAACTAGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:44709229 original size:80 final size:78
Alignment explanation
Indices: 44709032--44709253 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 78
44709022 GCCACTAGCT
* * * * * *
44709032 CAAATGCCTTCGGGACTTAGCCCAGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCAGGACTTAGCCCGGATAT-ATAGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
44709097 TATAATAACTCGCA
65 TATAATAACTCGCA
* *
44709111 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTAGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCAGGACTTAGCCCGGATAT-ATAGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
44709176 ATATAGTAGCTCGCA
65 -TATAATAACTCGCA
* *
44709191 CGAATGCCTTCAGGACTTAGCCCGGA-AT-TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCC
1 CAAATGCCTTCAGGACTTAGCCCGGATATATAG---CTAGCACAAATGCCT-TCGGGACTTAGCC
44709253 C
62 C
44709254 AGTTATCATC
Statistics
Matches: 125, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
77 3 0.02
79 62 0.50
80 60 0.48
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCAGGACTTAGCCCGGATATATAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:44709237 original size:40 final size:39
Alignment explanation
Indices: 44709025--44709253 Score: 205
Period size: 40 Copynumber: 5.8 Consensus size: 39
44709015 GGATATAGCC
* *
44709025 ACTAGCTCAAATGCCTTCGGGACTTAGCCC--AGTTATGGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA--G-A
* * * *
44709065 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGTATAATA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGA
* * *
44709104 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGA
* *
44709144 GCTAGCACAAACGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG-A
* * * * *
44709184 GCTCGCACGAATGCCTTCAGGACTTAGCCCGGAATTAGCC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG-A
*
44709224 ACTAGCTCAAATG-CTCTCGGGACTTAGCCC
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCC
44709254 AGTTATCATC
Statistics
Matches: 158, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 35 0.22
40 117 0.74
41 2 0.01
42 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGA
Found at i:44714104 original size:17 final size:18
Alignment explanation
Indices: 44714084--44714125 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
44714074 AGCTAGTAAT
44714084 AAAAAAATGGAAA-AAAG
1 AAAAAAATGGAAACAAAG
**
44714101 AAAATGATGGAAACAAAG
1 AAAAAAATGGAAACAAAG
44714119 AAAAAAA
1 AAAAAAA
44714126 AATGTGTCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (18 bp):
AAAAAAATGGAAACAAAG
Found at i:44715521 original size:39 final size:39
Alignment explanation
Indices: 44715444--44715682 Score: 258
Period size: 40 Copynumber: 6.1 Consensus size: 39
44715434 TCGAATGATG
* *
44715444 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATA
*
44715484 TCCGGACTAAGATCC-AAGGCATTTGTGCGAGTTACTAT-
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
*
44715522 T-CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
* * *
44715559 TTCCGGGCTAAGCCCGAAGGCATTGGTGC-AGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
*
44715598 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
* * **
44715638 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATA
44715678 TCCGG
1 TCCGG
44715683 TTAAATTCCG
Statistics
Matches: 173, Mismatches: 16, Indels: 20
0.83 0.08 0.10
Matches are distributed among these distances:
36 2 0.01
37 30 0.17
38 20 0.12
39 56 0.32
40 64 0.37
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:44715627 original size:78 final size:78
Alignment explanation
Indices: 44715444--44715661 Score: 268
Period size: 76 Copynumber: 2.8 Consensus size: 78
44715434 TCGAATGATG
* * * *
44715444 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCC-AAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
*
44715507 TGTGCGAGTTACTA
65 GGTGCGAGTTACTA
*
44715521 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATT
44715583 GGTGC-AGTTACTAAA
65 GGTGCGAGTTACT--A
* * * *
44715598 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
44715662 TGAACGAGTA
Statistics
Matches: 123, Mismatches: 10, Indels: 14
0.84 0.07 0.10
Matches are distributed among these distances:
75 10 0.08
76 38 0.31
77 27 0.22
78 35 0.28
79 13 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
GTGCGAGTTACTA
Found at i:44715643 original size:40 final size:40
Alignment explanation
Indices: 44715445--44715663 Score: 251
Period size: 39 Copynumber: 5.6 Consensus size: 40
44715435 CGAATGATGT
* * *
44715445 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
44715485 CCGGACTAAGAT-CC-AAGGCATTTGTGCGAGTTACTAT--
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
44715522 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
44715561 CCGGGCTAAG-CCCGAAGGCATTGGTGC-AGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44715598 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44715639 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
44715664 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
36 2 0.01
37 30 0.19
38 18 0.12
39 54 0.35
40 49 0.31
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:44723653 original size:39 final size:41
Alignment explanation
Indices: 44723544--44723772 Score: 260
Period size: 40 Copynumber: 5.8 Consensus size: 41
44723534 GTTATTCGAA
* * *
44723544 TGATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTAC
* *
44723585 T-ATATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTAC
1 TGATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
*
44723625 TGAT-TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTAC
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * *
44723664 TAAT-TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTAC
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
44723703 T-AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
44723743 TG-TAACCGGGCTATGTCCCGAAGGCATTTG
1 TGATATCCGGGCTAAGTCCCGAAGGCATTTG
44723773 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 67 0.42
40 82 0.51
41 11 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
TGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:44723794 original size:79 final size:78
Alignment explanation
Indices: 44723549--44723805 Score: 191
Period size: 79 Copynumber: 3.3 Consensus size: 78
44723539 TCGAATGATG
* * * * * * *
44723549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCAAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTA-ATCCGGGCTAAG-CCCGAAGGCATT
* ** * * *
44723613 TGTGCGAGTTACTGAT
63 GGAACAAGTTACTAAA
* * *
44723629 TCCGGGCT-AAGCCTGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGG
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAA-TCCGGGCTAAGCCCGAAGGCATTGG
**
44723693 TGCAAGTTACTAAA
65 AACAAGTTACTAAA
* *
44723707 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTGTAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTAC--TAATCCGGGCTAAG-CCCGAAGGCATT
* * *
44723771 TGAACGAG-TAGCTATA
63 GGAACAAGTTA-CTAAA
*
44723787 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
44723806 TACGTGATTC
Statistics
Matches: 146, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
78 30 0.21
79 75 0.51
80 38 0.26
81 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGCCCGAAGGCATTGGA
ACAAGTTACTAAA
Found at i:44726577 original size:42 final size:42
Alignment explanation
Indices: 44726469--44726712 Score: 160
Period size: 43 Copynumber: 5.7 Consensus size: 42
44726459 ATCAAGTACA
* * * * *
44726469 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAG-TATTG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAATCAGATA-CG
** * * *
44726512 ATGCCTCTGTCCCAGATAGGGTCTTCCACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * *
44726554 ATGTCGATGTCCCAGACATGGTCTTATACATAAATCTCA-AT-CG
1 ATGCCGATGTCCCAGACATGGTCTTACAC-GAAA--TCAGATACG
* * * **
44726597 AGGCCTG-TTTCCCAGACACGGTCTTACACGAAATCAGATATA
1 ATGCC-GATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
44726639 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCA-AT-CG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAA--TCAGATACG
* *
44726682 AGGCCTG-TGTCCCAGACACGGTCTTACACGA
1 ATGCC-GATGTCCCAGACATGGTCTTACACGA
44726713 TATCTTAGAC
Statistics
Matches: 154, Mismatches: 35, Indels: 25
0.72 0.16 0.12
Matches are distributed among these distances:
40 3 0.02
41 3 0.02
42 57 0.37
43 79 0.51
44 6 0.04
45 6 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
Found at i:44726610 original size:85 final size:85
Alignment explanation
Indices: 44726465--44726712 Score: 322
Period size: 85 Copynumber: 2.9 Consensus size: 85
44726455 CATAATCAAG
* * * * * *
44726465 TACAATGCCGACGTCCCAGACGTGGTC-T-TACATGTAAT-TCAGTATTGATGCCTCTGTCCCAG
1 TACAATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCA--ATCGAGGCCTGTGTCCCAG
* * *
44726527 ATAGGGTCTTCCACGAAATCAGA
63 ACACGGTCTTACACGAAATCAGA
* * *
44726550 TACGATGTCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTTTCCCAGACA
1 TACAATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACA
44726615 CGGTCTTACACGAAATCAGA
66 CGGTCTTACACGAAATCAGA
* *
44726635 TATAATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCCCAGACA
1 TACAATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACA
44726700 CGGTCTTACACGA
66 CGGTCTTACACGA
44726713 TATCTTAGAC
Statistics
Matches: 143, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
85 131 0.92
86 4 0.03
87 8 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (85 bp):
TACAATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACA
CGGTCTTACACGAAATCAGA
Found at i:44726611 original size:43 final size:42
Alignment explanation
Indices: 44726561--44726707 Score: 163
Period size: 43 Copynumber: 3.5 Consensus size: 42
44726551 ACGATGTCGA
*
44726561 TGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTG
1 TGTCCCAGACACGGTCTTATAC-TAAATCTCAATCGAGGCCTG
* * * ** * *
44726604 TTTCCCAGACACGGTCTTACACGAAATCAGATAT-AATGCC-G
1 TGTCCCAGACACGGTCTTATACTAAATCTCA-ATCGAGGCCTG
*
44726645 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 -TGTCCCAGACACGGTCTTATAC-TAAATCTCAATCGAGGCCTG
44726689 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
44726708 CACGATATCT
Statistics
Matches: 82, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 31 0.38
43 49 0.60
44 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTATACTAAATCTCAATCGAGGCCTG
Found at i:44729032 original size:39 final size:39
Alignment explanation
Indices: 44728895--44729077 Score: 203
Period size: 40 Copynumber: 4.7 Consensus size: 39
44728885 GCTACTCGTT
* * *
44728895 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCACA
* *
44728935 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCACA
* *
44728975 CCAATGCCTTTGGG-CTTAGCCCGGATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCACA
* * *
44729013 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTA-GTAACTCA-CA
44729053 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
44729078 CATCATTCGA
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
37 2 0.02
38 23 0.19
39 42 0.34
40 54 0.44
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCACA
Found at i:44729071 original size:78 final size:80
Alignment explanation
Indices: 44728895--44729077 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 80
44728885 GCTACTCGTT
* * *
44728895 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAGCTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* *
44728960 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* * **
44728976 CAATGCCTTTGGG-CTTAGCCCGGAT-TAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
*
44729038 ATAT-GTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
44729053 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
44729078 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
77 18 0.21
78 48 0.55
79 10 0.11
80 8 0.09
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:44733962 original size:93 final size:93
Alignment explanation
Indices: 44733850--44734021 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44733840 GCCCATAAGT
* *
44733850 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
44733915 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
44733943 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
44734008 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
44734022 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:44734017 original size:46 final size:46
Alignment explanation
Indices: 44733842--44734017 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
44733832 TGTAACCCGC
* * *
44733842 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
44733888 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
44733938 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
44733981 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
44734018 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:44736445 original size:30 final size:30
Alignment explanation
Indices: 44736401--44736489 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
44736391 CAAAGATAAC
44736401 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
44736430 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
44736460 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
44736490 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:44736449 original size:15 final size:15
Alignment explanation
Indices: 44736401--44736480 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
44736391 CAAAGATAAC
*
44736401 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
44736415 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
44736430 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
44736445 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
44736460 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
44736475 AAGAAA
1 AAGAAA
44736481 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:44736489 original size:15 final size:15
Alignment explanation
Indices: 44736412--44736489 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
44736402 AGAAAACCGA
44736412 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
44736427 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
44736441 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
44736456 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
44736472 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
44736487 ATA
1 ATA
44736490 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:44739554 original size:93 final size:93
Alignment explanation
Indices: 44739442--44739613 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44739432 GCCCATAAGT
* *
44739442 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
44739507 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
44739535 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
44739600 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
44739614 AAATCCTAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:44739609 original size:46 final size:46
Alignment explanation
Indices: 44739434--44739609 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
44739424 TGTAACCCGC
* * *
44739434 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
44739480 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
44739530 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
44739573 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
44739610 TGCCAAATCC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:44742033 original size:30 final size:30
Alignment explanation
Indices: 44741989--44742077 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
44741979 CAAAGATAAC
44741989 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
44742018 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
44742048 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
44742078 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:44742037 original size:15 final size:15
Alignment explanation
Indices: 44741989--44742068 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
44741979 CAAAGATAAC
*
44741989 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
44742003 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
44742018 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
44742033 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
44742048 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
44742063 AAGAAA
1 AAGAAA
44742069 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:44742077 original size:15 final size:15
Alignment explanation
Indices: 44742000--44742077 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
44741990 AGAAAACCGA
44742000 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
44742015 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
44742029 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
44742044 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
44742060 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
44742075 ATA
1 ATA
44742078 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:44745050 original size:46 final size:46
Alignment explanation
Indices: 44744983--44745156 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
44744973 TGTAACCCGC
*
44744983 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
44745029 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
44745079 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
44745121 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
44745157 ATGCCAACCA
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:44745149 original size:92 final size:93
Alignment explanation
Indices: 44744991--44745161 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
44744981 GCCCATAAGT
* *
44744991 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
44745056 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
44745084 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
44745148 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
44745162 AACCATCCTA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:44758001 original size:71 final size:71
Alignment explanation
Indices: 44757917--44758065 Score: 298
Period size: 71 Copynumber: 2.1 Consensus size: 71
44757907 CGATTTGTCT
44757917 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44757982 CTTTCA
66 CTTTCA
44757988 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44758053 CTTTCA
66 CTTTCA
44758059 CGTAGCT
1 CGTAGCT
44758066 ACTACAGGGT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:44759759 original size:40 final size:40
Alignment explanation
Indices: 44759676--44759787 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
44759666 TCGAATAATG
* *
44759676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
44759716 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
*
44759756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
44759788 CCATTATAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 53 0.85
41 8 0.13
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:44769039 original size:40 final size:40
Alignment explanation
Indices: 44768838--44769025 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
44768828 ATTCGGATTG
44768838 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
44768877 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * *
44768917 ATAAATGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
44768957 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
44768997 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
44769026 AGTGAGAAGC
Statistics
Matches: 138, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 13 0.09
40 125 0.91
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:44776928 original size:40 final size:40
Alignment explanation
Indices: 44776866--44777059 Score: 273
Period size: 40 Copynumber: 4.9 Consensus size: 40
44776856 ATTCGGATTG
* * *
44776866 ATAACCGGGCTAAGTCCTGAAGGTATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
44776906 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * **
44776946 ATAATCGGGCCAAGTCCCGAAGGCAACTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
44776986 ATAACCAGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
44777026 ATAACCGGGCTAAGTCCCG-AGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
44777060 AAGCTATATC
Statistics
Matches: 136, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 12 0.09
40 124 0.91
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:44778699 original size:40 final size:40
Alignment explanation
Indices: 44778625--44778766 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
44778615 AACCCAAGTA
* * * *
44778625 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
44778664 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
44778704 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
44778744 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
44778767 CATTCGAATA
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 11 0.12
40 78 0.85
41 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:44787212 original size:40 final size:40
Alignment explanation
Indices: 44787138--44787319 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
44787128 AACCCAAGTA
* *
44787138 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
44787177 CCGTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
44787217 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
44787257 CCTTCGGGACTTAGTCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
44787297 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
44787320 CATTCGAATA
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 11 0.09
40 114 0.89
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:44790379 original size:21 final size:22
Alignment explanation
Indices: 44790355--44790402 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
44790345 TTTGAAGGAT
*
44790355 TTCACTATTCTGGCATTT-CAA
1 TTCACTAGTCTGGCATTTACAA
* **
44790376 TTCAATAGTCTTTCATTTACAA
1 TTCACTAGTCTGGCATTTACAA
44790398 TTCAC
1 TTCAC
44790403 AACAGCATCA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (22 bp):
TTCACTAGTCTGGCATTTACAA
Found at i:44790532 original size:115 final size:115
Alignment explanation
Indices: 44790330--44790560 Score: 426
Period size: 115 Copynumber: 2.0 Consensus size: 115
44790320 AATTCACTTG
* *
44790330 ACTCATCTGATTCAATTTGAAGGATTTCACTATTCTGGCATTTCAATTCAATAGTCTTTCATTTA
1 ACTCATCTGATTCAATTTGAAGGATTTCACTATTCTGGCATTTCAATTCAATAGTCTGTCATCTA
44790395 CAATTCACAACAGCATCATGTAGAGTCAACCAATCCATACCTAGAATCAC
66 CAATTCACAACAGCATCATGTAGAGTCAACCAATCCATACCTAGAATCAC
* *
44790445 ACTCATCTGATTCAATTTGAAGGATTTCATTATTCTGGCATTTTAATTCAATAGTCTGTCATCTA
1 ACTCATCTGATTCAATTTGAAGGATTTCACTATTCTGGCATTTCAATTCAATAGTCTGTCATCTA
44790510 CAATTCACAACAGCATCATGTAGAGTCAACCAATCCATACCTAGAATCAC
66 CAATTCACAACAGCATCATGTAGAGTCAACCAATCCATACCTAGAATCAC
44790560 A
1 A
44790561 TCGAATTCAT
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 112 1.00
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (115 bp):
ACTCATCTGATTCAATTTGAAGGATTTCACTATTCTGGCATTTCAATTCAATAGTCTGTCATCTA
CAATTCACAACAGCATCATGTAGAGTCAACCAATCCATACCTAGAATCAC
Found at i:44792430 original size:48 final size:48
Alignment explanation
Indices: 44792326--44792655 Score: 292
Period size: 48 Copynumber: 6.9 Consensus size: 48
44792316 TACTAGGGTT
* * * *
44792326 ATATGTGAGCCAGTGTAAGACCATGTCTGG-GCATGGCATCGAC-TTCG
1 ATATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT-G
*
44792373 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
1 ATATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * *
44792421 TTGTATGAGCCAGTGTAAGACCATGTTTGGAACATGGCCTCGGCATTG
1 ATATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * * * * * * **
44792469 TTATGA-GAGCTAGTGTAAGATCGTGTCT-GAGACATGGCATCAGCCTCA
1 ATAT-ATGAGCCAGTGTAAGACCATGTTTGGA-ACATGGCATCGGCATTG
* * * *
44792517 ATATGTGAGCCAGTGTAAGACCATGTTTCGTAC-TTGCATCGGCATTG
1 ATATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * * * * * * *
44792564 TTGTAGGAGCTAGTATAAGACCATGTTTGGGACATGGCATCGACACTG
1 ATATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
* * *
44792612 ATATATGAGAACTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 ATATATGAG--CCAGTGTAAGACCATGTTTGGAACATGGCATCG
44792656 ACATCTTACC
Statistics
Matches: 229, Mismatches: 45, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
47 65 0.28
48 129 0.56
49 4 0.02
50 31 0.14
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
ATATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG
Found at i:44792599 original size:143 final size:145
Alignment explanation
Indices: 44792325--44792657 Score: 449
Period size: 143 Copynumber: 2.3 Consensus size: 145
44792315 ATACTAGGGT
* * * * *
44792325 TATATGTGAGCCAGTGTAAGACCATGTCTGGGCATGGCATCGACTTCGATATGTGAGCCAGTGTA
1 TATATGAGAGCTAGTGTAAGACCATGTCTGGACATGGCATCGACCTCAATATGTGAGCCAGTGTA
* * *
44792390 AGACCATGTTTGGAACATGGCATCGGCATTGTTGTATGAGCCAGTGTAAGACCATGTTTGGAACA
66 AGACCATGTTTCGAACATGGCATCGGCATTGTTGTAGGAGCCAGTATAAGACCATGTTTGGAACA
* * *
44792455 TGGCCTCGGCATTG-
131 TGGCATCGACACTGA
* *
44792469 T-TATGAGAGCTAGTGTAAGATCGTGTCTGAGACATGGCATC-AGCCTCAATATGTGAGCCAGTG
1 TATATGAGAGCTAGTGTAAGACCATGTCTG-GACATGGCATCGA-CCTCAATATGTGAGCCAGTG
* * * *
44792532 TAAGACCATGTTTCGTAC-TTGCATCGGCATTGTTGTAGGAGCTAGTATAAGACCATGTTTGGGA
64 TAAGACCATGTTTCGAACATGGCATCGGCATTGTTGTAGGAGCCAGTATAAGACCATGTTTGGAA
44792596 CATGGCATCGACACTGA
129 CATGGCATCGACACTGA
*
44792613 TATATGAGAACTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 TATATGAGAGCTAGTGTAAGACCATGTCT-GGACATGGCATCGAC
44792658 ATCTTACCCT
Statistics
Matches: 163, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
143 79 0.48
144 46 0.28
145 36 0.22
146 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (145 bp):
TATATGAGAGCTAGTGTAAGACCATGTCTGGACATGGCATCGACCTCAATATGTGAGCCAGTGTA
AGACCATGTTTCGAACATGGCATCGGCATTGTTGTAGGAGCCAGTATAAGACCATGTTTGGAACA
TGGCATCGACACTGA
Found at i:44793526 original size:40 final size:40
Alignment explanation
Indices: 44793440--44793527 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
44793430 AGACACACGG
* **
44793440 GCGTGTGTCTAGACCATGTGTGACACATGGTTTTACCCGT
1 GCGTGTGTCTAGACCATGTGTGACACATGGTTTGACCCAC
* * *
44793480 GCGTGTGTCTAGACCGTTTGTGACACATGGTTTGCCCCAC
1 GCGTGTGTCTAGACCATGTGTGACACATGGTTTGACCCAC
*
44793520 GGGTGTGT
1 GCGTGTGT
44793528 GGTCCGGCTG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.32
Consensus pattern (40 bp):
GCGTGTGTCTAGACCATGTGTGACACATGGTTTGACCCAC
Found at i:44800167 original size:35 final size:35
Alignment explanation
Indices: 44800121--44800193 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
44800111 CCATACATTG
44800121 TTATGAAATTCACATGTCATTATTTATAGACATAC
1 TTATGAAATTCACATGTCATTATTTATAGACATAC
*
44800156 TTATGAGATTCACATGTCATTATTTATAGACATAC
1 TTATGAAATTCACATGTCATTATTTATAGACATAC
44800191 TTA
1 TTA
44800194 CCTTTCATTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.41
Consensus pattern (35 bp):
TTATGAAATTCACATGTCATTATTTATAGACATAC
Found at i:44800435 original size:42 final size:43
Alignment explanation
Indices: 44800365--44800453 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 43
44800355 CTTACATGTT
* * *
44800365 ATCAAATATGAATGCCACTATCCCAGACAGGGTCTTACACGAA
1 ATCAAATATGAATGCCAATATCCCAGACAGGGTCTCACACAAA
* * *
44800408 ATCATATATG-ATGCCAATGTCCCAGACATGGTCTCACACAAA
1 ATCAAATATGAATGCCAATATCCCAGACAGGGTCTCACACAAA
44800450 ATCA
1 ATCA
44800454 CATACTAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 31 0.77
43 9 0.22
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (43 bp):
ATCAAATATGAATGCCAATATCCCAGACAGGGTCTCACACAAA
Found at i:44801549 original size:21 final size:21
Alignment explanation
Indices: 44801523--44801563 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
44801513 TCCTTTTGTC
44801523 AAATTAAGCAT-CCAAACTATA
1 AAATT-AGCATACCAAACTATA
*
44801544 AAATTAGCATACGAAACTAT
1 AAATTAGCATACCAAACTAT
44801564 CACACATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.24
Consensus pattern (21 bp):
AAATTAGCATACCAAACTATA
Found at i:44803920 original size:25 final size:25
Alignment explanation
Indices: 44803886--44803936 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
44803876 AGCAACCACC
44803886 ACACTACACCTCATCATTAATTAGT
1 ACACTACACCTCATCATTAATTAGT
*
44803911 ACACTACACCTCATGATTAATTAGT
1 ACACTACACCTCATCATTAATTAGT
44803936 A
1 A
44803937 ATTTATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (25 bp):
ACACTACACCTCATCATTAATTAGT
Found at i:44808648 original size:39 final size:39
Alignment explanation
Indices: 44808538--44808681 Score: 189
Period size: 39 Copynumber: 3.6 Consensus size: 39
44808528 TCGTTCAAAC
* * ** * *
44808538 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* *
44808578 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
44808618 GCCTTCAGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
44808657 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
44808682 CTCGAACATT
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:44810577 original size:43 final size:43
Alignment explanation
Indices: 44810527--44810631 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
44810517 TGTTTAATGT
*
44810527 ATTGGCACAAAGTGTGCGAAACAATTATAGCCTCAACTAATTA
1 ATTGGCACTAAGTGTGCGAAACAATTATAGCCTCAACTAATTA
* ** *
44810570 ATTGGCACTAAGTGTGCGATACAATTATAGTTTCAGCTAATTA
1 ATTGGCACTAAGTGTGCGAAACAATTATAGCCTCAACTAATTA
*
44810613 ATCGGCACTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
44810632 GTTCGTTGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGAAACAATTATAGCCTCAACTAATTA
Found at i:44817953 original size:40 final size:40
Alignment explanation
Indices: 44817908--44818074 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
44817898 CGGAATATAA
44817908 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
44817948 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
44817988 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
44818028 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
44818067 CCGGATAT
1 CCGGATAT
44818075 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:44818058 original size:80 final size:79
Alignment explanation
Indices: 44817908--44818074 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
44817898 CGGAATATAA
* *
44817908 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
44817973 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
44817988 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
44818050 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
44818067 CCGGATAT
1 CCGGATAT
44818075 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:44818922 original size:17 final size:19
Alignment explanation
Indices: 44818899--44818944 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
44818889 AAGAAGCATG
44818899 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
44818917 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
44818935 AATCATGCTC
1 AATCATGCTC
44818945 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:44825955 original size:40 final size:40
Alignment explanation
Indices: 44825910--44826076 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
44825900 CGGAATATAA
44825910 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
44825950 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
44825990 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
44826030 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
44826069 CCGGATAT
1 CCGGATAT
44826077 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:44826060 original size:80 final size:79
Alignment explanation
Indices: 44825910--44826076 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
44825900 CGGAATATAA
* *
44825910 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
44825975 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
44825990 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
44826052 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
44826069 CCGGATAT
1 CCGGATAT
44826077 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:44826924 original size:17 final size:19
Alignment explanation
Indices: 44826901--44826946 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
44826891 AAGAAGCATG
44826901 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
44826919 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
44826937 AATCATGCTC
1 AATCATGCTC
44826947 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:44833357 original size:20 final size:20
Alignment explanation
Indices: 44833332--44833398 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
44833322 ATTTTGATAT
*
44833332 ACATGAT-TGATATGACATGC
1 ACATGATATG-TATGAAATGC
*
44833352 ACATGATATGTATGATATGC
1 ACATGATATGTATGAAATGC
*
44833372 ACATGTTATGTATGAAATGC
1 ACATGATATGTATGAAATGC
44833392 ACATGAT
1 ACATGAT
44833399 GTATTCATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:44833477 original size:26 final size:26
Alignment explanation
Indices: 44833448--44833522 Score: 80
Period size: 28 Copynumber: 2.8 Consensus size: 26
44833438 GAGGAAGTGC
44833448 AAAAGTGCTTATGCCCTAGTTTACCGAA
1 AAAAG-GCTTATGCCCTAGTTTACCG-A
44833476 AAAAGGCCTTATGCCCCT-GTTTACCGA
1 AAAAGG-CTTATG-CCCTAGTTTACCGA
* * *
44833503 GAAGGGCTTATGCCCCAGTT
1 AAAAGGCTTATGCCCTAGTT
44833523 ATTAAAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
25 3 0.07
26 9 0.22
27 6 0.15
28 19 0.46
29 4 0.10
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGCTTATGCCCTAGTTTACCGA
Found at i:44833784 original size:31 final size:31
Alignment explanation
Indices: 44833749--44833812 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
44833739 TGTTTACAGT
44833749 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
44833780 AAAGGCTTCGTCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
44833811 AA
1 AA
44833813 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:44842591 original size:20 final size:20
Alignment explanation
Indices: 44842568--44842621 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
44842558 CATGGTATGC
44842568 ATGATATGCACATGACACGT
1 ATGATATGCACATGACACGT
* *
44842588 ATGATATGCACATGATATGT
1 ATGATATGCACATGACACGT
44842608 ATGATATGCACATG
1 ATGATATGCACATG
44842622 TGGTACTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
ATGATATGCACATGACACGT
Found at i:44842700 original size:24 final size:24
Alignment explanation
Indices: 44842673--44842874 Score: 314
Period size: 24 Copynumber: 8.4 Consensus size: 24
44842663 GAGAAAGTGC
*
44842673 AAAAGGGCTTATGCCCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
44842697 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
44842721 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44842745 GAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44842769 GAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
44842793 GAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44842817 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44842841 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44842865 AAAAGAGGCT
1 AAAAG-GGCT
44842875 AGGCCTCTAG
Statistics
Matches: 165, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
24 161 0.98
25 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:44845335 original size:38 final size:39
Alignment explanation
Indices: 44845283--44845394 Score: 172
Period size: 38 Copynumber: 2.9 Consensus size: 39
44845273 AATGTTCGAG
44845283 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
44845322 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
44845360 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
44845395 GGTTACTATA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
38 36 0.54
39 14 0.21
40 17 0.25
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:44855471 original size:40 final size:40
Alignment explanation
Indices: 44855344--44855473 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
44855334 ATGCTGGAAA
* *
44855344 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * **
44855384 CTACATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
44855424 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
44855464 TTATATCCGG
1 TTATATCCGG
44855474 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:44857178 original size:25 final size:25
Alignment explanation
Indices: 44857149--44857196 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
44857139 TTATAACATG
* * *
44857149 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
44857174 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
44857197 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:44857264 original size:20 final size:20
Alignment explanation
Indices: 44857240--44857298 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
44857230 TAAACATGGT
44857240 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
* *
44857260 GTGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
44857280 ATGTATGATATGCATATGA
1 ATGTATGATATGCACATGA
44857299 GGTATTCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:44857376 original size:24 final size:24
Alignment explanation
Indices: 44857349--44857588 Score: 347
Period size: 24 Copynumber: 10.0 Consensus size: 24
44857339 AAGGAAGTGG
* *
44857349 AAAAGGGCTTATGCCGCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
44857373 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44857397 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
44857421 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
44857445 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
44857469 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* **
44857493 GAAAGGGCTTATGCCCTGGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
44857517 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44857541 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
44857565 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
44857589 ATGATAAAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
24 190 0.95
25 11 0.05
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:44859224 original size:20 final size:20
Alignment explanation
Indices: 44859199--44859265 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
44859189 ATTTTGATAT
*
44859199 ACATGAT-TGATATGACATGC
1 ACATGATATG-TATGATATGC
44859219 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
44859239 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
44859259 ACATGAT
1 ACATGAT
44859266 GTAGTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:44859376 original size:25 final size:26
Alignment explanation
Indices: 44859314--44859386 Score: 121
Period size: 27 Copynumber: 2.8 Consensus size: 26
44859304 GGAGAAGTGC
*
44859314 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
44859340 AAAAAGGGCTTATGCCCCAGTTTACCG
1 -AAAAGGGCTTATGCCCCAGTTTACCG
44859367 -AAAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
44859387 ATTAAAAAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 20 0.44
27 25 0.56
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:44859395 original size:25 final size:25
Alignment explanation
Indices: 44859314--44859395 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 25
44859304 GGAGAAGTGC
* **
44859314 AAAAGGGCTTATGCCCTAGTTTACCGA
1 AAAAGGGCTTATGCCCCAG-TTA-TTA
44859341 AAAAGGGCTTATGCCCCAG-T-TTA
1 AAAAGGGCTTATGCCCCAGTTATTA
*
44859364 CCGAAAGGGCTTATGCCCCAGTTATTA
1 --AAAAGGGCTTATGCCCCAGTTATTA
44859391 AAAAG
1 AAAAG
44859396 AGGCAAGGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
23 1 0.02
25 23 0.50
26 1 0.02
27 21 0.46
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTATTA
Found at i:44859649 original size:31 final size:31
Alignment explanation
Indices: 44859613--44859714 Score: 114
Period size: 31 Copynumber: 3.1 Consensus size: 31
44859603 CGTTTGCAGT
44859613 AAAGGCTTCGGCCTAGTAATATAAAATATGA
1 AAAGGCTTCGGCCTAGTAATATAAAATATGA
*
44859644 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCTAGTA--AT---ATA--AAATATGA
* *
44859682 AAAGGCTTCGGCCTAGTATTATGAAATATGA
1 AAAGGCTTCGGCCTAGTAATATAAAATATGA
44859713 AA
1 AA
44859715 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
31 27 0.45
33 4 0.07
36 4 0.07
38 25 0.42
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTAATATAAAATATGA
Found at i:44859681 original size:38 final size:38
Alignment explanation
Indices: 44859630--44859737 Score: 182
Period size: 38 Copynumber: 2.9 Consensus size: 38
44859620 TCGGCCTAGT
*
44859630 AATATAAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
44859668 AATATGAAATATGAAAAGGCTTCGGCCTAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
44859706 AATATGAAATATGAAAAGGCTTCAG-CCAGTAT
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTAT
44859738 ATGTTGAGAT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
37 6 0.09
38 60 0.91
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:44861442 original size:2 final size:2
Alignment explanation
Indices: 44861435--44861463 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
44861425 TTCGGTTTAT
44861435 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
44861464 GATTTTGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:44867174 original size:43 final size:43
Alignment explanation
Indices: 44867122--44867223 Score: 141
Period size: 43 Copynumber: 2.4 Consensus size: 43
44867112 CTGAGAAAAG
*
44867122 GGCATTAAGTGTGCGATACAATTATAGCCTCAACTAATTAATT
1 GGCACTAAGTGTGCGATACAATTATAGCCTCAACTAATTAATT
* ** * *
44867165 GGCACTAAGTGTGTGATACAATTATAGTTTTAGCTAATTAATT
1 GGCACTAAGTGTGCGATACAATTATAGCCTCAACTAATTAATT
*
44867208 GTCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
44867224 GTTCGTTGAA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (43 bp):
GGCACTAAGTGTGCGATACAATTATAGCCTCAACTAATTAATT
Found at i:44871985 original size:21 final size:22
Alignment explanation
Indices: 44871959--44872021 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
44871949 CACTTGACAC
44871959 AGGGGCACACGTCCC-TGTGGG
1 AGGGGCACACGTCCCATGTGGG
* *
44871980 AGGGGCA-ACATGCCCATGTAGG
1 AGGGGCACACGT-CCCATGTGGG
*
44872002 AGGGGCAACACG-CCCGTGTG
1 AGGGGC-ACACGTCCCATGTG
44872022 AGCATTCCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.09
21 10 0.30
22 17 0.52
23 1 0.03
24 2 0.06
ACGTcount: A:0.21, C:0.27, G:0.40, T:0.13
Consensus pattern (22 bp):
AGGGGCACACGTCCCATGTGGG
Found at i:44873269 original size:46 final size:45
Alignment explanation
Indices: 44873127--44873294 Score: 131
Period size: 47 Copynumber: 3.6 Consensus size: 45
44873117 TAAGGTGCCA
* * * *
44873127 ATGCTATGTCCCAGACACGGTCTTACACTGGCTTATGCCTCAAGTCG
1 ATGC-ATGTCCCAGACA-TGTCTTACACTGGCTTATGTCTCGAGCCG
* * * * *
44873174 AAGCCATGTCCCAGACATAGGCTTACACTAGC-TATCATCTCGTAACCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTCTCG-AGCCG
*
44873222 ATGCATGTCCCAGACATGTCTTACATTGGCTTATGTCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGA-GCCG
* * * * *
44873268 ATGTATTTCCCAAACAAGTCTTTCACT
1 ATGCATGTCCCAGACATGTCTTACACT
44873295 AGCTCTCACA
Statistics
Matches: 94, Mismatches: 21, Indels: 13
0.73 0.16 0.10
Matches are distributed among these distances:
45 1 0.01
46 42 0.45
47 45 0.48
48 6 0.06
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGCCG
Found at i:44875387 original size:95 final size:95
Alignment explanation
Indices: 44875219--44875406 Score: 358
Period size: 95 Copynumber: 2.0 Consensus size: 95
44875209 CCAATGGCCA
*
44875219 GTACTTTTCCCAACTACCTTGAAATTCGAGAACCCAACACCGTAACATGTCCTCTAAGATCTGAA
1 GTACATTTCCCAACTACCTTGAAATTCGAGAACCCAACACCGTAACATGTCCTCTAAGATCTGAA
*
44875284 TTATTCTTTCCAATTGACCATCGGTTTGTG
66 TCATTCTTTCCAATTGACCATCGGTTTGTG
44875314 GTACATTTCCCAACTACCTTGAAATTCGAGAACCCAACACCGTAACATGTCCTCTAAGATCTGAA
1 GTACATTTCCCAACTACCTTGAAATTCGAGAACCCAACACCGTAACATGTCCTCTAAGATCTGAA
44875379 TCATTCTTTCCAATTGACCATCGGTTTG
66 TCATTCTTTCCAATTGACCATCGGTTTG
44875407 CGGGTGAAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (95 bp):
GTACATTTCCCAACTACCTTGAAATTCGAGAACCCAACACCGTAACATGTCCTCTAAGATCTGAA
TCATTCTTTCCAATTGACCATCGGTTTGTG
Found at i:44881002 original size:54 final size:54
Alignment explanation
Indices: 44880922--44881027 Score: 185
Period size: 54 Copynumber: 2.0 Consensus size: 54
44880912 TTGAGAGTTA
*
44880922 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCTGGGCTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCGGGCTGT
**
44880976 TATATCCGGGCTAAGTCCCGAAGAGCATTGGTGCTGGTGTTATATCCGGGCT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCGGGCT
44881028 AAGTCCCGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (54 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCGGGCTGT
Found at i:44881028 original size:40 final size:40
Alignment explanation
Indices: 44880973--44881085 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 40
44880963 ATATCTGGGC
* *
44880973 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTGGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
44881013 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
44881053 TGATATATCCGGGCTAA-ACCTCGAAG-GCATTCG
1 TGTTATATCCGGGCTAAGTCC-CGAAGAGCATTCG
44881086 CGCTGGAATT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
39 9 0.13
40 59 0.87
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:44881187 original size:57 final size:57
Alignment explanation
Indices: 44881097--44881264 Score: 237
Period size: 57 Copynumber: 2.9 Consensus size: 57
44881087 GCTGGAATTA
* * * * *
44881097 TGAGGCACTATGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* **
44881154 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTACGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* * *
44881211 TTAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT
44881265 CAGTGGGCAC
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 97 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
Found at i:44881256 original size:28 final size:28
Alignment explanation
Indices: 44881101--44881257 Score: 136
Period size: 28 Copynumber: 5.5 Consensus size: 28
44881091 GAATTATGAG
* * * *
44881101 GCACTATGTGTGCAAGCTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* * ** * *
44881129 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
*
44881157 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
* ** **
44881186 GCACTATGTGTACGAGATT-GGTAATTTA
1 GCACTATGTGTGCGAG-TTCTTTAATCGA
44881214 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
44881243 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
44881258 AATCAGTCAG
Statistics
Matches: 99, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
28 56 0.57
29 43 0.43
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:44893429 original size:46 final size:45
Alignment explanation
Indices: 44893300--44893452 Score: 166
Period size: 46 Copynumber: 3.3 Consensus size: 45
44893290 CCCAAACACG
* * *
44893300 GTCTTACACTGGCTTATGTCTTAAGTCGAAGCCATGTCCCAGACAT
1 GTCTTACACTAGCTTACGTCTCAAGTCGAAG-CATGTCCCAGACAT
* * * *
44893346 GGTCTTACACTAAC-TATCATCTCGTAGCCGACA-CATGTCCCAGACAT
1 -GTCTTACACTAGCTTA-CGTCTC-AAGTCGA-AGCATGTCCCAGACAT
*
44893393 GTCTTACACTAGCTTACGTCTCAAGGTCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTTACGTCTCAA-GTCGAAGCATGTCCCAGACAT
44893439 GTCTTACACTAGCT
1 GTCTTACACTAGCT
44893453 CTCACAATGA
Statistics
Matches: 88, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 51 0.58
47 30 0.34
48 5 0.06
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GTCTTACACTAGCTTACGTCTCAAGTCGAAGCATGTCCCAGACAT
Found at i:44896477 original size:92 final size:93
Alignment explanation
Indices: 44896364--44896534 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
44896354 CGCCCATAAG
* *
44896364 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
44896429 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
44896457 CGAAC-CGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
44896521 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
44896535 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 70 0.93
93 5 0.07
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:44896531 original size:46 final size:46
Alignment explanation
Indices: 44896357--44896531 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
44896347 TGTAACCCGC
* * *
44896357 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
44896403 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
44896453 -C-TCA-CGAAC-CGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
44896495 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
44896532 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 4 0.04
46 82 0.75
47 4 0.04
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:44904017 original size:93 final size:93
Alignment explanation
Indices: 44903904--44904075 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44903894 CGCCCATAAG
* *
44903904 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
44903969 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
44903997 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
44904062 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
44904076 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:44904072 original size:46 final size:46
Alignment explanation
Indices: 44903897--44904072 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
44903887 TGTAACCCGC
* * *
44903897 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
44903943 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
44903993 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
44904036 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
44904073 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:44907911 original size:29 final size:29
Alignment explanation
Indices: 44907878--44907935 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
44907868 GTGACTAGAT
44907878 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
44907907 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
44907936 CGACACTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:44907950 original size:29 final size:29
Alignment explanation
Indices: 44907881--44907942 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
44907871 ACTAGATTGG
* *
44907881 CACTAAGTGTGCATGCTGGAAATATATGG
1 CACTAAGTGTGCATGCTGGAAATATACGA
44907910 CACTAAGTGTGCATGCTGGAAATATACGA
1 CACTAAGTGTGCATGCTGGAAATATACGA
44907939 CACT
1 CACT
44907943 GGGTGTGCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (29 bp):
CACTAAGTGTGCATGCTGGAAATATACGA
Found at i:44914191 original size:39 final size:39
Alignment explanation
Indices: 44914148--44914234 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
44914138 CCGGCAATTA
*
44914148 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGACACGAG
* *
44914187 GCCTGCTAGGTATAAACCTGAATTTATCACCGACATGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGACACGAG
*
44914226 GCCTACTAG
1 GCCTGCTAG
44914235 ACATTAACTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGACACGAG
Found at i:44914540 original size:49 final size:49
Alignment explanation
Indices: 44914468--44914565 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
44914458 ACACTATTGC
44914468 TTCTTAATTTACCATTACATATCTTCCATCTCATGAATATAACTTACGG
1 TTCTTAATTTACCATTACATATCTTCCATCTCATGAATATAACTTACGG
*
44914517 TTCTTAATTTACCATTACATATCTTCTATCTCATGAATATAACTTACGG
1 TTCTTAATTTACCATTACATATCTTCCATCTCATGAATATAACTTACGG
44914566 CGATATGATC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (49 bp):
TTCTTAATTTACCATTACATATCTTCCATCTCATGAATATAACTTACGG
Found at i:44922459 original size:40 final size:40
Alignment explanation
Indices: 44922337--44922485 Score: 135
Period size: 40 Copynumber: 3.7 Consensus size: 40
44922327 AATGATGTCT
* *
44922337 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAATCC
* * *
44922377 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAATCC
* **
44922417 GGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AATCC
* * *
44922457 GGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG
44922486 TCGCTATATC
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 78 0.87
41 11 0.12
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAATCC
Found at i:44926880 original size:46 final size:46
Alignment explanation
Indices: 44926830--44927005 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
44926820 TGGTTGAGCA
44926830 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44926876 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44926921 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44926969 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44927006 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44926986 original size:93 final size:93
Alignment explanation
Indices: 44926827--44926998 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44926817 GGATGGTTGA
* *
44926827 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44926892 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
44926920 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44926985 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
44926999 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44934421 original size:46 final size:46
Alignment explanation
Indices: 44934371--44934546 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
44934361 TGGTTGAGCA
44934371 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44934417 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44934462 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44934510 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44934547 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44934527 original size:93 final size:93
Alignment explanation
Indices: 44934368--44934539 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44934358 GGATGGTTGA
* *
44934368 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44934433 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
44934461 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44934526 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
44934540 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44940796 original size:40 final size:40
Alignment explanation
Indices: 44940699--44940971 Score: 269
Period size: 40 Copynumber: 6.8 Consensus size: 40
44940689 CGAATGGTAT
* ** * *
44940699 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA-A
* * * *
44940741 -CGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAA
* *
44940780 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAA
* * * * *
44940820 TCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAA
*
44940860 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAA
* * * * *
44940900 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAA
* * * * * *
44940940 CCGGGCTATGTCTCGAAGACAATCGAGCGAGT
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGT
44940972 CGCTATATCC
Statistics
Matches: 191, Mismatches: 39, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 167 0.87
41 23 0.12
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAA
Found at i:44940834 original size:80 final size:80
Alignment explanation
Indices: 44940699--44940929 Score: 365
Period size: 80 Copynumber: 2.9 Consensus size: 80
44940689 CGAATGGTAT
* ** *
44940699 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATACGGGTCAATTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTGACTAAATACGGGTCAATTCCCGAAGGCATTT
44940764 GTGCGAGTTACCAAAA
65 GTGCGAGTTACCAAAA
*
44940780 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATTCGGGTCAATTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATACGGGTCAATTCCCGAAGGCATTTG
44940845 TGCGAGTTACCAAAA
66 TGCGAGTTACCAAAA
* * *
44940860 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATACGGGTC-AATTCCCGAAGGCATTT
44940924 GTGCGA
65 GTGCGA
44940930 ATCACTATAA
Statistics
Matches: 141, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
79 1 0.01
80 115 0.82
81 25 0.18
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATACGGGTCAATTCCCGAAGGCATTTG
TGCGAGTTACCAAAA
Found at i:44940923 original size:120 final size:121
Alignment explanation
Indices: 44940709--44940929 Score: 320
Period size: 120 Copynumber: 1.8 Consensus size: 121
44940699 CCGGGCTAAG
* * * *
44940709 TCCCGAAGGCTTTTGTGCTAAGTGACTAAATACGGGTCAATTCCCGAAGGCATTTGTGCGAGTTA
1 TCCCGAAGGCATTTGTGCTAAGTGACCAAATACGGGTCAAGTCCCGAAGGCAATTGTGCGAGTTA
*
44940774 CCAAAACCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATTCGGGTCAAT
66 CCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATTCGGGTCAAT
* * *
44940830 TCCCGAAGGCATTTGTGC-GAGTTACCAAA-ACCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTT
1 TCCCGAAGGCATTTGTGCTAAGTGACCAAATA-CGGGTCAAGTCCCGAAGGCAATTGTGCGAGTT
* * *
44940893 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGA
65 ACCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGA
44940930 ATCACTATAA
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
119 1 0.01
120 70 0.80
121 17 0.19
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (121 bp):
TCCCGAAGGCATTTGTGCTAAGTGACCAAATACGGGTCAAGTCCCGAAGGCAATTGTGCGAGTTA
CCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATTCGGGTCAAT
Found at i:44940942 original size:80 final size:80
Alignment explanation
Indices: 44940699--44940971 Score: 359
Period size: 80 Copynumber: 3.4 Consensus size: 80
44940689 CGAATGGTAT
** *
44940699 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATACGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTGACTAAATACGGGTCAATTCCCGAAGGCATTT
44940764 GTGCGAGTTACCAAAA
65 GTGCGAGTTACCAAAA
* *
44940780 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATTCGGGTCAATTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATACGGGTCAATTCCCGAAGGCATTTG
44940845 TGCGAGTTACCAAAA
66 TGCGAGTTACCAAAA
* * * *
44940860 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATACGGGTC-AATTCCCGAAGGCATTT
* * * *
44940924 GTGCGAATCACTATAA
65 GTGCGAGTTACCAAAA
* * * * *
44940940 CCGGGCTATGTCTCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGT
44940972 CGCTATATCC
Statistics
Matches: 173, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 1 0.01
80 147 0.85
81 25 0.14
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGACTAAATACGGGTCAATTCCCGAAGGCATTTG
TGCGAGTTACCAAAA
Found at i:44940957 original size:120 final size:121
Alignment explanation
Indices: 44940697--44940957 Score: 314
Period size: 120 Copynumber: 2.2 Consensus size: 121
44940687 TTCGAATGGT
* * * * *
44940697 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATACGGGTCAATTCCCGAAGGCAT
1 ATCCGGGCTATGTCCCGAAGGCATTTGTGCTAAGTGACCAAATACGGGTCAAGTCCCGAAGGCAA
* * *
44940762 TTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTGACTAA
66 TTGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACTAA
* * * * *
44940818 ATTCGGGTCAAT-TCCCGAAGGCATTTGTGC-GAGTTACCAAA-ACCGGGTTAAGTCCCGAAGGC
1 ATCCGGG-CTATGTCCCGAAGGCATTTGTGCTAAGTGACCAAATA-CGGGTCAAGTCCCGAAGGC
* * *
44940880 AATTGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
64 AATTGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACTA-A
*
44940939 A-CCGGGCTATGTCTCGAAG
1 ATCCGGGCTATGTCCCGAAG
44940958 ACAATCGAGC
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
119 4 0.03
120 86 0.74
121 25 0.21
122 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (121 bp):
ATCCGGGCTATGTCCCGAAGGCATTTGTGCTAAGTGACCAAATACGGGTCAAGTCCCGAAGGCAA
TTGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACTAA
Found at i:44944443 original size:40 final size:40
Alignment explanation
Indices: 44944318--44944469 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
44944308 TCGAATGATG
* * *
44944318 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
44944358 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
44944398 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
44944439 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
44944470 TTGCTATATT
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 80 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:44947633 original size:39 final size:39
Alignment explanation
Indices: 44947590--44947676 Score: 140
Period size: 39 Copynumber: 2.2 Consensus size: 39
44947580 CCGGCAATTA
44947590 GCCTGCTAGGTATAAACCTGAACTTATCAC-CGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACACGG-ACGAG
* *
44947629 GCCTGCTAGGTATAAACCTGAATTTATCACATGGACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACACGGACGAG
44947668 GCCTGCTAG
1 GCCTGCTAG
44947677 ACATTAAGTC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 43 0.96
40 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACACGGACGAG
Found at i:44963092 original size:28 final size:27
Alignment explanation
Indices: 44963029--44963098 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
44963019 ATAGTGAGTC
44963029 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
44963056 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
44963084 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
44963099 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:44969052 original size:40 final size:39
Alignment explanation
Indices: 44968986--44969189 Score: 264
Period size: 40 Copynumber: 5.1 Consensus size: 39
44968976 TGAATGATAC
* * *
44968986 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
* *
44969026 TCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
*
44969066 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * *
44969106 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* *
44969146 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
44969186 CCGG
1 CCGG
44969190 CTAAATTCCG
Statistics
Matches: 149, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 146 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:44970008 original size:18 final size:18
Alignment explanation
Indices: 44969985--44970021 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
44969975 GTAATGGAAT
44969985 TAAATAGTGAATAAATTA
1 TAAATAGTGAATAAATTA
44970003 TAAATAGTGAATAAATTA
1 TAAATAGTGAATAAATTA
44970021 T
1 T
44970022 GTAAATGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
TAAATAGTGAATAAATTA
Found at i:44972761 original size:58 final size:57
Alignment explanation
Indices: 44972680--44972822 Score: 164
Period size: 57 Copynumber: 2.5 Consensus size: 57
44972670 CTCATTATAG
* *
44972680 AAAGGATTTAGCCCGGACAGGTAATCCTAATATAATCCC-TCTCGAGCATATGTTACA-
1 AAAGGATTTAGCCTGGACAGGTAATCCTAAT-TAAGCCCTTCT-GAGCATATGTTACAT
* * * * *
44972737 ATTAGGATTTAGCCTGGACTGGTAATTCTAATTGAGCTCTTCTGAGCATATGTTACAT
1 A-AAGGATTTAGCCTGGACAGGTAATCCTAATTAAGCCCTTCTGAGCATATGTTACAT
* *
44972795 AAAAGATTTAGCCTGGACCGGTAATCCT
1 AAAGGATTTAGCCTGGACAGGTAATCCT
44972823 GTAATACAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
57 42 0.58
58 30 0.42
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (57 bp):
AAAGGATTTAGCCTGGACAGGTAATCCTAATTAAGCCCTTCTGAGCATATGTTACAT
Found at i:44984066 original size:27 final size:28
Alignment explanation
Indices: 44984010--44984079 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
44984000 AAATTTGTAC
44984010 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
44984038 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
44984065 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
44984080 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:44984090 original size:27 final size:27
Alignment explanation
Indices: 44984010--44984091 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
44984000 AAATTTGTAC
* *
44984010 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
44984038 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
44984065 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
44984092 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:44991871 original size:27 final size:28
Alignment explanation
Indices: 44991815--44991884 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
44991805 AAATTTGTAC
44991815 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
44991843 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
44991870 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
44991885 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:44991895 original size:27 final size:27
Alignment explanation
Indices: 44991815--44991896 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
44991805 AAATTTGTAC
* *
44991815 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
44991843 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
44991870 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
44991897 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:44997730 original size:64 final size:64
Alignment explanation
Indices: 44997629--44997757 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
44997619 GGAAAGTAAG
44997629 TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTATACATTACGTTCCATAAAATCC
1 TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTATACATTACGTTCCATAAAATCC
44997693 TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTATACATTACGTTCCATAAAATCC
1 TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTATACATTACGTTCCATAAAATCC
44997757 T
1 T
44997758 TTCATGTTAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (64 bp):
TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTATACATTACGTTCCATAAAATCC
Found at i:45005120 original size:46 final size:46
Alignment explanation
Indices: 45005070--45005242 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
45005060 TGGTTGAGCA
*
45005070 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45005116 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45005161 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45005209 -CCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
45005243 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.07
46 55 0.51
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45005226 original size:93 final size:93
Alignment explanation
Indices: 45005067--45005237 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
45005057 GGATGGTTGA
* * *
45005067 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
45005132 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
45005160 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
*
45005224 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
45005238 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45012631 original size:42 final size:42
Alignment explanation
Indices: 45012585--45012743 Score: 122
Period size: 42 Copynumber: 3.6 Consensus size: 42
45012575 TAAGTGATTT
*
45012585 CGTATAAGACCATGTCTGGGACATGGCATCGATATGAGGTCC
1 CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
* * * * *
45012627 CGTATAAGAACATATCTAGGACATGGCATCGGCACCAATTTGA-GACTT
1 CGTATAAGACCATATCTGGGACATGGCATC-G-----ATATGAGGTC-C
* * * * *
45012675 CGTATAAGACCATATTTGGGATATGGCATCGATGTGTGGTTC
1 CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
* * *
45012717 CATGTAAGACCATGTCTGGGACATGGC
1 CGTATAAGACCATATCTGGGACATGGC
45012744 TTTGGCACCA
Statistics
Matches: 89, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
42 53 0.60
43 2 0.02
47 3 0.03
48 31 0.35
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (42 bp):
CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
Found at i:45012695 original size:90 final size:90
Alignment explanation
Indices: 45012583--45012753 Score: 225
Period size: 90 Copynumber: 1.9 Consensus size: 90
45012573 GGTAAGTGAT
* *
45012583 TTCGTATAAGACCATGTCTGGGACATGGCATCGATATGAGGTCCCGTATAAGAACATATCTAGGA
1 TTCGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCCCATATAAGAACATATCTAGGA
45012648 CATGGCATCGGCACCAATTTGAGAC
66 CATGGCATCGGCACCAATTTGAGAC
* * * * * * * * *
45012673 TTCGTATAAGACCATATTTGGGATATGGCATCGATGTGTGGTTCCATGTAAGACCATGTCTGGGA
1 TTCGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCCCATATAAGAACATATCTAGGA
* *
45012738 CATGGCTTTGGCACCA
66 CATGGCATCGGCACCA
45012754 TACTTGGTGT
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 68 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (90 bp):
TTCGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCCCATATAAGAACATATCTAGGA
CATGGCATCGGCACCAATTTGAGAC
Found at i:45016009 original size:47 final size:47
Alignment explanation
Indices: 45015937--45016206 Score: 380
Period size: 47 Copynumber: 5.7 Consensus size: 47
45015927 CCCTTCGGGA
* * * * ** * *
45015937 CTTATCACATTTATACACTTCCACATCCATCACGTTTGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45015984 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
*
45016031 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45016080 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45016127 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45016174 CTTATCACATATATATACACCTTCACATTCATC
1 CTTATCAC--ATATATACACTTTCACATTCATC
45016207 GCATAAAATC
Statistics
Matches: 204, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
47 138 0.68
48 1 0.00
49 65 0.32
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45016099 original size:96 final size:96
Alignment explanation
Indices: 45015937--45016206 Score: 372
Period size: 96 Copynumber: 2.8 Consensus size: 96
45015927 CCCTTCGGGA
* * ** * * *
45015937 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTTGCCACTCGGCCCTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
45015999 CACTTTCACATTCATCACATTGGCCATTCA-GC
65 CACTTTCACATTCATCACATCGGCCATT-AGGC
45016031 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
45016096 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
45016127 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
45016190 ACACCTTCACATTCATC
64 ACACTTTCACATTCATC
45016207 GCATAAAATC
Statistics
Matches: 160, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
94 56 0.35
95 2 0.01
96 99 0.62
97 3 0.02
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45016143 original size:143 final size:143
Alignment explanation
Indices: 45015937--45016206 Score: 434
Period size: 143 Copynumber: 1.9 Consensus size: 143
45015927 CCCTTCGGGA
* * ** *
45015937 CTTATCACATTTATACACTTCCACATCCATCACGTTTGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
45016002 TTTCACATTCATCACATTGGCCATTCA-GCCTTATCACATATATATACACCTTCACATTCATCAC
66 TTTCACATTCATCACATCGGCCATT-AGGCCTTATCACATATATATACACCTTCACATTCATCAC
45016066 ATCGGCCATTAGGC
130 ATCGGCCATTAGGC
* * * *
45016080 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
45016145 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATC
45016207 GCATAAAATC
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
142 1 0.01
143 115 0.99
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:45038440 original size:78 final size:78
Alignment explanation
Indices: 45038305--45038549 Score: 350
Period size: 78 Copynumber: 3.1 Consensus size: 78
45038295 TCTTCGGAAT
* ** * * *
45038305 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGCCCGATATAACAACTCGCACA
45038369 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
*
45038383 TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGCCCGATATAACAACTCGCACGA
1 TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGCCCGATATAACAACTCGCACAA
45038448 ATGCCTTCGGGTC
66 ATGCCTTCGGGTC
*
45038461 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCA
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGCCC-GATATAA-CAACTCGCA
* *
45038525 TAAATGCCTTCGGGAC
63 CAAATGCCTTCGGGTC
45038541 TTAGCCCGG
1 TTAGCCCGG
45038550 GTATCATTCA
Statistics
Matches: 152, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
78 76 0.50
79 40 0.26
80 35 0.23
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (78 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGCCCGATATAACAACTCGCACAA
ATGCCTTCGGGTC
Found at i:45038484 original size:40 final size:40
Alignment explanation
Indices: 45038305--45038549 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
45038295 TCTTCGGAAT
* ** *
45038305 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
45038344 TTAACCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
45038383 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
45038422 TTAGCCC-GATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
45038461 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
45038501 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
45038541 TTAGCCCGG
1 TTAGCCCGG
45038550 GTATCATTCA
Statistics
Matches: 189, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
38 17 0.09
39 78 0.41
40 93 0.49
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:45046610 original size:40 final size:40
Alignment explanation
Indices: 45046545--45046752 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
45046535 TCTTCGGAAT
* ** *
45046545 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
45046584 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
45046624 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
45046664 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
45046704 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
45046744 TTAGCCCGG
1 TTAGCCCGG
45046753 GTATCATTCA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 150 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:45053273 original size:40 final size:40
Alignment explanation
Indices: 45053222--45053396 Score: 264
Period size: 40 Copynumber: 4.4 Consensus size: 40
45053212 CTGATGTAAC
* *
45053222 AACCAGCACGAATGCCTTCGGGATTTAAACCGA-TTATAAT
1 AACCCGCACGAATGCCTTCGGGACTT-AACCGAGTTATAAT
*
45053262 AACCCGGACGAATGCCTTCGGGACTTAACCCG-GTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAA-CCGAGTTATAAT
*
45053302 AACCCGCACGAATGCCTTCGGGACTTAACCTAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCGAGTTATAAT
* *
45053342 AACCCGCACAAATGCCTTCGGGACTTAACCCAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCGAGTTATAAT
45053382 AACCCGCACGAATGC
1 AACCCGCACGAATGC
45053397 TATGCACATA
Statistics
Matches: 124, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.03
40 120 0.97
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCGAGTTATAAT
Found at i:45058490 original size:48 final size:48
Alignment explanation
Indices: 45058438--45058806 Score: 661
Period size: 48 Copynumber: 7.7 Consensus size: 48
45058428 ACATCTCCTA
45058438 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
45058486 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
45058534 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
*
45058582 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
*
45058630 CATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
45058678 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-T
*
45058727 -ATATTTCACCCTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-T
* *
45058775 -ATATTTCACATTAGTCATTCGGCTTTACCACA
1 CATATTTCACACTAGCCATTCGGCTTTACCACA
45058807 CACATATATT
Statistics
Matches: 312, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 311 1.00
49 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (48 bp):
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
Found at i:45064962 original size:47 final size:45
Alignment explanation
Indices: 45064911--45065074 Score: 179
Period size: 44 Copynumber: 3.5 Consensus size: 45
45064901 GACAAATGCC
*
45064911 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGACGATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-AGCTCGA-GATGATAGCT
* * * *
45064958 AGTGTAAGACGTGTCTGGGACACGCATCAGCTAAGAGTTG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCT-CGAGATGATAGCT
* * *
45065002 AGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTCG-AGAT--GATAGCT
45065050 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
45065075 GCATAGACAA
Statistics
Matches: 98, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 34 0.35
45 1 0.01
46 7 0.07
47 28 0.29
48 12 0.12
49 15 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTCGAGATGATAGCT
Found at i:45069558 original size:40 final size:40
Alignment explanation
Indices: 45069513--45069680 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
45069503 CGGAATATAA
45069513 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
45069553 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
45069593 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
45069633 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
45069673 CCGGATAT
1 CCGGATAT
45069681 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.