Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 154 of 770
Found at i:45402708 original size:44 final size:43
Alignment explanation
Indices: 45402655--45403360 Score: 345
Period size: 44 Copynumber: 16.3 Consensus size: 43
45402645 GCTTCACTGT
* * *
45402655 TGCTCAGGGAGATAAGATCTACAATCTTCAGTCTACTTCACTAC
1 TGCTTAGGGAGACAAGATCTAC-ATCTTCAGTCTACTCCACTAC
* * * ** *
45402699 TGCTTAGGGAGATAGGATGGT--GGCTT-AGATCTGCTCCACTAC
1 TGCTTAGGGAGACAAGAT-CTACATCTTCAG-TCTACTCCACTAC
* *
45402741 TACTTAGGGAGACAAGATCTACAATCTTCA-ACTTACTCCACTAC
1 TGCTTAGGGAGACAAGATCTAC-ATCTTCAGTC-TACTCCACTAC
* * * * * ** * * * *
45402785 TACCTAGGGAGATAGGATGGT--GGCTTAAATCTGCTTCACTAC
1 TGCTTAGGGAGACAAGAT-CTACATCTTCAGTCTACTCCACTAC
*
45402827 TGCTTAGGGAGACAAGAT-TCACCATCTTC-GATCTGCTCCACTAC
1 TGCTTAGGGAGACAAGATCT-A-CATCTTCAG-TCTACTCCACTAC
* *
45402871 TACTTAGGGAGACAAGAT-TCACCATCTTC-GATCTGCTCCACTAC
1 TGCTTAGGGAGACAAGATCT-A-CATCTTCAG-TCTACTCCACTAC
* * **
45402915 TACTTAGGGAGACAAGATCTACAATCTTTAACCTACTCCACTAC
1 TGCTTAGGGAGACAAGATCTAC-ATCTTCAGTCTACTCCACTAC
* * * * ** * * *
45402959 TACTTAGGGAGATAGGATGGT--GGCTTAAATCTGCTCCACTAC
1 TGCTTAGGGAGACAAGAT-CTACATCTTCAGTCTACTCCACTAC
* *
45403001 TGCTTAGAGAGACAAGAT-TCACCATCTTC-GATTTACTCCACTAC
1 TGCTTAGGGAGACAAGATCT-A-CATCTTCAG-TCTACTCCACTAC
* * *
45403045 TGCTTAGGAAGATAAGATCTACAATCTTCAGCCTACTCCACTAC
1 TGCTTAGGGAGACAAGATCTAC-ATCTTCAGTCTACTCCACTAC
*** * ** * * * *
45403089 TGCTTAGGGAGATGGGATGGT--GGCTTAAATCTATTCTACTAC
1 TGCTTAGGGAGACAAGAT-CTACATCTTCAGTCTACTCCACTAC
* * * * *
45403131 TGTTTAGAGAGACAAGATCTGACATCTTC-GATCTACTTCGCTAA
1 TGCTTAGGGAGACAAGATCT-ACATCTTCAG-TCTACTCCACTAC
* *
45403175 TGCTTAGGGAGACAAGATCCACAATCTTCAGCCTACTCCACTAC
1 TGCTTAGGGAGACAAGATCTAC-ATCTTCAGTCTACTCCACTAC
* * ** * * *
45403219 TGCTTAGGGAGATAAGATGGT--GGCTTAAATCTGCTCCACTAC
1 TGCTTAGGGAGACAAGAT-CTACATCTTCAGTCTACTCCACTAC
* * ** ** *
45403261 TGCTTAGAGAGACAATATTCGCCATCTTC-GATCTGTTGCACTAC
1 TGCTTAGGGAGACAAGA-TCTACATCTTCAG-TCTACTCCACTAC
* * *
45403305 TGCTTAGGGAGACAAGATATACAATCTTCAGCCTACTCCATTAC
1 TGCTTAGGGAGACAAGATCTAC-ATCTTCAGTCTACTCCACTAC
45403349 TGCTTAGGGAGA
1 TGCTTAGGGAGA
45403361 TAGGATCTGT
Statistics
Matches: 497, Mismatches: 125, Indels: 80
0.71 0.18 0.11
Matches are distributed among these distances:
40 2 0.00
41 4 0.01
42 142 0.29
43 9 0.02
44 330 0.66
45 10 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
TGCTTAGGGAGACAAGATCTACATCTTCAGTCTACTCCACTAC
Found at i:45402761 original size:86 final size:86
Alignment explanation
Indices: 45402660--45403058 Score: 448
Period size: 86 Copynumber: 4.6 Consensus size: 86
45402650 ACTGTTGCTC
* * *
45402660 AGGGAGATAAGATCTACAATCTTCAGTCTACTTCACTACTGCTTAGGGAGATAGGATGGTGGCTT
1 AGGGAGACAAGATCTACAATCTTCAGTCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTT
*
45402725 AGATCTGCTCCACTACTACTT
66 AAATCTGCTCCACTACTACTT
* *
45402746 AGGGAGACAAGATCTACAATCTTCA-ACTTACTCCACTACTACCTAGGGAGATAGGATGGTGGCT
1 AGGGAGACAAGATCTACAATCTTCAGTC-TACTCCACTACTACTTAGGGAGATAGGATGGTGGCT
* *
45402810 TAAATCTGCTTCACTACTGCTT
65 TAAATCTGCTCCACTACTACTT
* * * * ****
45402832 AGGGAGACAAGAT-TCACCATCTTC-GATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCA
1 AGGGAGACAAGATCT-ACAATCTTCAG-TCTACTCCACTACTACTTAGGGAGATAGGA-T-GGTG
* **
45402895 TCTTCGATCTGCTCCACTACTACTT
62 GCTTAAATCTGCTCCACTACTACTT
* **
45402920 AGGGAGACAAGATCTACAATCTTTAACCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTT
1 AGGGAGACAAGATCTACAATCTTCAGTCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTT
*
45402985 AAATCTGCTCCACTACTGCTT
66 AAATCTGCTCCACTACTACTT
* * * * *
45403006 AGAGAGACAAGAT-TCACCATCTTC-GATTTACTCCACTACTGCTTAGGAAGATA
1 AGGGAGACAAGATCT-ACAATCTTCAG-TCTACTCCACTACTACTTAGGGAGATA
45403059 AGATCTACAA
Statistics
Matches: 257, Mismatches: 46, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
85 3 0.01
86 184 0.72
87 3 0.01
88 66 0.26
89 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (86 bp):
AGGGAGACAAGATCTACAATCTTCAGTCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTT
AAATCTGCTCCACTACTACTT
Found at i:45402936 original size:174 final size:174
Alignment explanation
Indices: 45402726--45403100 Score: 592
Period size: 174 Copynumber: 2.2 Consensus size: 174
45402716 TGGTGGCTTA
*
45402726 GATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCAACTTACTCCACTACTACCTA
1 GATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCACTACTACCTA
* *
45402791 GGGAGATAGGATGGTGGCTTAAATCTGCTTCACTACTGCTTAGGGAGACAAGATTCACCATCTTC
66 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTC
* * *
45402856 GATCTGCTCCACTACTACTTAGGGAGACAAGAT-TCACCATCTTC
131 GATCTACTCCACTACTACTTAGGAAGACAAGATCT-ACAATCTTC
* *
45402900 GATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCTTTAACCTACTCCACTACTACTTA
1 GATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCACTACTACCTA
45402965 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTC
66 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTC
* * *
45403030 GATTTACTCCACTACTGCTTAGGAAGATAAGATCTACAATCTTC
131 GATCTACTCCACTACTACTTAGGAAGACAAGATCTACAATCTTC
* * *
45403074 -AGCCTACTCCACTACTGCTTAGGGAGA
1 GA-TCTGCTCCACTACTACTTAGGGAGA
45403101 TGGGATGGTG
Statistics
Matches: 185, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
173 1 0.01
174 183 0.99
175 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (174 bp):
GATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCACTACTACCTA
GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTC
GATCTACTCCACTACTACTTAGGAAGACAAGATCTACAATCTTC
Found at i:45402991 original size:130 final size:130
Alignment explanation
Indices: 45402655--45403366 Score: 806
Period size: 130 Copynumber: 5.5 Consensus size: 130
45402645 GCTTCACTGT
* * * *
45402655 TGCTCAGGGAGATAAGATCTACAATCTTCAGTCTACTTCACTACTGCTTAGGGAGATAGGATGGT
1 TGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGT
* * * * *
45402720 GGCTTAGATCTGCTCCACTACTACTTAGGGAGACAAGA-TCTACAATCTTC-AACTTACTCCACT
66 GGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTC-ACCATCTTCGATC-TACTCCACT
45402783 AC
129 AC
* * * * * ** * ** * * * *
45402785 TACCTAGGGAGATAGGATGGT---GGCTTAAATCTGCTTCACTACTGCTTAGGGAGACAAGATTC
1 TGCTTAGGGAGACAAGAT-CTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGA-T-
***** ** * * *
45402847 ACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCATCTTCGATCTGCTCCAC
63 GGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTCGATCTACTCCAC
45402912 TAC
128 TAC
* * * *
45402915 TACTTAGGGAGACAAGATCTACAATCTTTAACCTACTCCACTACTACTTAGGGAGATAGGATGGT
1 TGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGT
*
45402980 GGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTCGATTTACTCCACTAC
66 GGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTCGATCTACTCCACTAC
* * *
45403045 TGCTTAGGAAGATAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATGGGATGGT
1 TGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGT
** * * * * *
45403110 GGCTTAAATCTATTCTACTACTGTTTAGAGAGACAAGATCTGA-CATCTTCGATCTACTTCGCTA
66 GGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGAT-TCACCATCTTCGATCTACTCCACTA
*
45403174 A
130 C
* *
45403175 TGCTTAGGGAGACAAGATCCACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAAGATGGT
1 TGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGT
* * ** *
45403240 GGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAATATTCGCCATCTTCGATCTGTTGCACTAC
66 GGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTCGATCTACTCCACTAC
* *
45403305 TGCTTAGGGAGACAAGATATACAATCTTCAGCCTACTCCATTACTGCTTAGGGAGATAGGAT
1 TGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGAT
45403367 CTGTGAATTT
Statistics
Matches: 490, Mismatches: 82, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
128 31 0.06
129 3 0.01
130 419 0.86
131 8 0.02
132 29 0.06
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (130 bp):
TGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGT
GGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTCACCATCTTCGATCTACTCCACTAC
Found at i:45410437 original size:3 final size:3
Alignment explanation
Indices: 45410429--45410936 Score: 200
Period size: 3 Copynumber: 169.0 Consensus size: 3
45410419 AAGATGAAAC
* * * *
45410429 AAT AAT AAT AA- AAT AA- AAT AAA AAT AAC AAT ACATT AAT AAG AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT
* *
45410474 AAT AAT -AT ATT AAT -AT AAAT AGT AAT -AT AA- AGAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * * * *
45410517 AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT GAT GAT GAT GAT GAT -GT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
45410564 AAGT AAA AAT -AT AAGT AAAT GCAA- AAG GA- AAT ATAT AAT GAAGT AAT
1 AA-T AAT AAT AAT AA-T -AAT --AAT AAT AAT AAT A-AT AAT -AA-T AAT
* * ** * * **
45410611 AAT -AT AA- AATT AAT TAG CCT AAT AAT -AT GAT AAT AAT ATT GGT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
45410654 AAC AAT -AC AAT AAT AGT AAT AA- AGT AGA- AA- ACAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT A-AT AAT AAT AAT
* * * * *
45410697 -GT ATT AAT AAG AAT AAT AAT -AT AAT AAT AAT AGT AAT CAT GGAA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT --AAT
* ** *
45410741 AAT AAT AAT AAT ATT AAT -AT TTT AAAT AA- GAT AAT AAT AAT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT A-AT
* * * ** *
45410786 AGA- AAGT AGT AGT AAT AAT ACATT AAT AAG GGT AAT AGT AAT AAT AAT
1 A-AT AA-T AAT AAT AAT AAT A-A-T AAT AAT AAT AAT AAT AAT AAT AAT
* * *
45410834 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AGT AGT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
*
45410883 -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT TAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
45410928 AAT AAT AAT
1 AAT AAT AAT
45410937 TAATTTGAAA
Statistics
Matches: 388, Mismatches: 71, Indels: 92
0.70 0.13 0.17
Matches are distributed among these distances:
2 38 0.10
3 307 0.79
4 33 0.09
5 10 0.03
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:45410442 original size:25 final size:22
Alignment explanation
Indices: 45410410--45410460 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 22
45410400 TGAAGCCAAA
*
45410410 AATAAAATAAAGATGAAACAATAAT
1 AATAAAATAAA-AT-AAA-AATAAC
45410435 AATAAAATAAAATAAAAATAAC
1 AATAAAATAAAATAAAAATAAC
45410457 AATA
1 AATA
45410461 CATTAATAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 9 0.36
23 3 0.12
24 2 0.08
25 11 0.44
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (22 bp):
AATAAAATAAAATAAAAATAAC
Found at i:45410468 original size:30 final size:29
Alignment explanation
Indices: 45410408--45410539 Score: 81
Period size: 30 Copynumber: 4.2 Consensus size: 29
45410398 AATGAAGCCA
*
45410408 AAAATAAAATAAAGATGAAACAATAATAAT
1 AAAATAAAATAAAAAT-AAACAATAATAAT
45410438 AAAATAAAATAAAAAT-AACAATACATTAAT
1 AAAATAAAATAAAAATAAACAATA-A-TAAT
* * *
45410468 AAGAGTAATAATATATTAATATAAATAGTAAT-AT
1 AA-AATAA-AATA-A--AA-ATAAACAATAATAAT
* *
45410502 AAAGATAATAATAATAAT-AATAATAATAAT
1 AAA-ATAA-AATAAAAATAAACAATAATAAT
45410532 AATAATAA
1 AA-AATAA
45410540 TAATGATGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 24
0.73 0.06 0.21
Matches are distributed among these distances:
28 7 0.08
29 9 0.11
30 31 0.37
31 6 0.07
32 4 0.05
33 3 0.04
34 12 0.14
35 3 0.04
36 3 0.04
37 5 0.06
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (29 bp):
AAAATAAAATAAAAATAAACAATAATAAT
Found at i:45415136 original size:40 final size:40
Alignment explanation
Indices: 45415082--45415195 Score: 174
Period size: 40 Copynumber: 2.9 Consensus size: 40
45415072 TTCACATGAG
*
45415082 AGAAAGGTACATGAATGTATGGTAATGAAAAAAAGTAGAA
1 AGAAAGGTATATGAATGTATGGTAATGAAAAAAAGTAGAA
* * *
45415122 AGAAAGGTATATGAATCTATAGTAATGAAAAAGAGTAGAA
1 AGAAAGGTATATGAATGTATGGTAATGAAAAAAAGTAGAA
* *
45415162 AGTAAGGTATATGAATGTATGGTAATTAAAAAAA
1 AGAAAGGTATATGAATGTATGGTAATGAAAAAAA
45415196 ATAAAACGAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.52, C:0.02, G:0.23, T:0.24
Consensus pattern (40 bp):
AGAAAGGTATATGAATGTATGGTAATGAAAAAAAGTAGAA
Found at i:45416155 original size:21 final size:20
Alignment explanation
Indices: 45416123--45416163 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
45416113 ATAGGGAAAG
*
45416123 AAAATGAATAAAAATAAAAT
1 AAAATGAATAAAAACAAAAT
45416143 AAAATGAAATAAAAACAAAAT
1 AAAATG-AATAAAAACAAAAT
45416164 GGACTAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (20 bp):
AAAATGAATAAAAACAAAAT
Found at i:45417516 original size:49 final size:49
Alignment explanation
Indices: 45417457--45417554 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
45417447 TTGATTCTTG
45417457 TTCTAAATTATGTGTGTTAATTTCTTATTTTAATATTTCTAGAATATTA
1 TTCTAAATTATGTGTGTTAATTTCTTATTTTAATATTTCTAGAATATTA
45417506 TTCTAAATTATGTGTGTTAATTTCTTATTTTAATATTTCTAGAATATTA
1 TTCTAAATTATGTGTGTTAATTTCTTATTTTAATATTTCTAGAATATTA
45417555 ATTCATATTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.55
Consensus pattern (49 bp):
TTCTAAATTATGTGTGTTAATTTCTTATTTTAATATTTCTAGAATATTA
Found at i:45417533 original size:27 final size:27
Alignment explanation
Indices: 45417451--45417534 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
45417441 AAATACTTGA
*
45417451 TTCTTGTTCTAAATTATGTGTGTTAAT
1 TTCTTATTCTAAATTATGTGTGTTAAT
* *
45417478 TTCTTATT-TTAA-TAT-T-T-CTAGA-
1 TTCTTATTCTAAATTATGTGTGTTA-AT
* *
45417500 ATATTATTCTAAATTATGTGTGTTAAT
1 TTCTTATTCTAAATTATGTGTGTTAAT
45417527 TTCTTATT
1 TTCTTATT
45417535 TTAATATTTC
Statistics
Matches: 41, Mismatches: 9, Indels: 14
0.64 0.14 0.22
Matches are distributed among these distances:
22 8 0.20
23 5 0.12
24 4 0.10
25 4 0.10
26 5 0.12
27 15 0.37
ACGTcount: A:0.26, C:0.07, G:0.10, T:0.57
Consensus pattern (27 bp):
TTCTTATTCTAAATTATGTGTGTTAAT
Found at i:45425973 original size:2 final size:2
Alignment explanation
Indices: 45425966--45426003 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
45425956 ATCAATCACT
45425966 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45426004 CTACACATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45426784 original size:24 final size:24
Alignment explanation
Indices: 45426637--45426772 Score: 218
Period size: 24 Copynumber: 5.7 Consensus size: 24
45426627 GATTCAACTC
* * *
45426637 CGCACACATAGTGCCAAATAATTA
1 CGCACACATAGTGCCATACAAATA
*
45426661 CGCACACATAGTGCCATACATATA
1 CGCACACATAGTGCCATACAAATA
*
45426685 CGCAAACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
45426709 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
*
45426733 CGCACACATAGTGCCATACCAATA
1 CGCACACATAGTGCCATACAAATA
45426757 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
45426773 CTCAAATCCG
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 104 1.00
ACGTcount: A:0.40, C:0.29, G:0.13, T:0.18
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATA
Found at i:45430521 original size:47 final size:47
Alignment explanation
Indices: 45430470--45430574 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
45430460 TAGTATTAAT
*
45430470 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
45430517 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
45430564 AATGTGATAAG
1 TATGTGATAAG
45430575 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:45432615 original size:38 final size:38
Alignment explanation
Indices: 45432513--45432617 Score: 115
Period size: 38 Copynumber: 2.8 Consensus size: 38
45432503 AATCCGAGTT
* * * *
45432513 TAAAGACCCGCTGACTATATGTAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
* *
45432551 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGA
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
*
45432589 TTAAGACCC-ACTGGCT-TCATATAGAGATT
1 TAAAGACCCGA-TGGCTAT-ATATAGAGATT
45432618 TCATCCAAGC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
37 2 0.04
38 54 0.96
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
Found at i:45432701 original size:40 final size:40
Alignment explanation
Indices: 45432645--45432840 Score: 365
Period size: 40 Copynumber: 4.9 Consensus size: 40
45432635 CTCGATGATG
*
45432645 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
45432685 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
45432725 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
45432765 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
45432805 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
45432841 ATGTGTATTC
Statistics
Matches: 152, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:45434690 original size:40 final size:40
Alignment explanation
Indices: 45434637--45434794 Score: 210
Period size: 40 Copynumber: 3.9 Consensus size: 40
45434627 TTGGTAACTT
*
45434637 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTC
* * * *
45434677 GCACGAATACCTTCGGGTCTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTC
* *
45434717 GCATAAATGCCTTCGGGACTTAGCCCGGATATAATCGCTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTC
* *
45434757 GCATAAATGCCTTCGGGACTTAGCCCGGGTATCAATCA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT-AATCA
45434795 AATGCTCATG
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
40 100 0.95
41 5 0.05
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTC
Found at i:45434704 original size:80 final size:80
Alignment explanation
Indices: 45434597--45434784 Score: 216
Period size: 80 Copynumber: 2.4 Consensus size: 80
45434587 GTAACCACAA
* * * * * ** * *
45434597 GCACAATTGCCTTCAGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATACCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCC
45434662 CGGATATAA-CAACTC
66 CGGATATAATC-ACTC
* * *
45434677 GCACGAATACCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCC
1 GCACAAATACCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCC
*
45434742 CGGATATAATCGCTC
66 CGGATATAATCACTC
* * *
45434757 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATACCTTCGGGTCTTAGCCCGG
45434785 GTATCAATCA
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
80 89 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
GCACAAATACCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCC
CGGATATAATCACTC
Found at i:45442687 original size:40 final size:40
Alignment explanation
Indices: 45442643--45442823 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 40
45442633 CAAGCACATT
* * * *
45442643 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAA
* * * *
45442683 TGCCTTCAGGTCTTAGCCCGGATATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAA
* * * * *
45442723 TACCTTTGGGTCTTAGCCCGGATATAATCACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAA
* * * ** * *
45442763 TGCCTTCGGGACTTAGCCCGAATATAATCGCTGGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAA
*
45442803 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
45442824 GTATCAATCA
Statistics
Matches: 118, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 118 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCACAAA
Found at i:45447651 original size:20 final size:20
Alignment explanation
Indices: 45447622--45447660 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45447612 TCTGTTCTGT
*
45447622 TTTTAGAAAATCATTATAAA
1 TTTTACAAAATCATTATAAA
*
45447642 TTTTACAAAATGATTATAA
1 TTTTACAAAATCATTATAA
45447661 GATAAGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (20 bp):
TTTTACAAAATCATTATAAA
Found at i:45448672 original size:42 final size:42
Alignment explanation
Indices: 45448612--45448880 Score: 294
Period size: 42 Copynumber: 6.4 Consensus size: 42
45448602 TTTTAAAGAC
* * * *
45448612 CATGTTCTTTAGCGGCGTTTGTAAGAAAAGCGCCACTAAAGGT
1 CATGTTCTATAGTGGCGTTTGT-GGAAAAGCGCCGCTAAAGGT
45448655 CTAT-TT-TATAGTGGCGTTTGTGGCAAAAGCGCCGCTAAAGGT
1 C-ATGTTCTATAGTGGCGTTTGTGG-AAAAGCGCCGCTAAAGGT
* *
45448697 C-TGTTCTATAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGGT
1 CATGTTCTATAGTGGCGTTTGTGGAAAAGCGCCGCTAAAGGT
* * *
45448738 CATGTTCTTTAGTGGCGTTTGTGGGAAAGCGCCGCTAAACGT
1 CATGTTCTATAGTGGCGTTTGTGGAAAAGCGCCGCTAAAGGT
* ***
45448780 CATGTTCTTTAGTGGCGTTTGTAGG-AAAGTATCGCTAAAGGT
1 CATGTTCTATAGTGGCGTTTGT-GGAAAAGCGCCGCTAAAGGT
* * * * *
45448822 CATGTTCTTTAGCGGCGTTTGTGGGAAAAGTGCCACTAAAGAT
1 CATGTTCTATAGTGGCGTTTGT-GGAAAAGCGCCGCTAAAGGT
*
45448865 TATGTTCTATAGTGGC
1 CATGTTCTATAGTGGC
45448881 ATTTTTTTTC
Statistics
Matches: 197, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
40 1 0.01
41 21 0.11
42 142 0.72
43 31 0.16
44 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (42 bp):
CATGTTCTATAGTGGCGTTTGTGGAAAAGCGCCGCTAAAGGT
Found at i:45448835 original size:126 final size:126
Alignment explanation
Indices: 45448605--45448880 Score: 335
Period size: 126 Copynumber: 2.2 Consensus size: 126
45448595 TTAAATTTTT
* * *
45448605 TAAAGACCATGTTCTTTAGCGGCGTTTGTAAGAAAAGCGCCACTAAAGGTCTATTTTATAGTGGC
1 TAAAGATCATGTTCTTTAGTGGCGTTTGTAAGAAAAGCGCCACTAAACGTCTATTTTATAGTGGC
* *
45448670 GTTTGTGGCAAAAGCGCCGCTAAAGGTCTGTTCTATAGCGGCGTTTGTGGG-AAAGCGCCGC
66 GTTTGTGG-AAAAGCACCGCTAAAGGTCTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCAC
* * * * *
45448731 TAAAGGTCATGTTCTTTAGTGGCGTTTGT-GGGAAAGCGCCGCTAAACGTC-ATGTTCTTTAGTG
1 TAAAGATCATGTTCTTTAGTGGCGTTTGTAAGAAAAGCGCCACTAAACGTCTAT-TT-TATAGTG
* * * *
45448794 GCGTTTGTAGG-AAAGTATCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGTGCCAC
64 GCGTTTGT-GGAAAAGCACCGCTAAAGGTC-TGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCAC
* *
45448858 TAAAGATTATGTTCTATAGTGGC
1 TAAAGATCATGTTCTTTAGTGGC
45448881 ATTTTTTTTC
Statistics
Matches: 128, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
124 2 0.02
125 34 0.27
126 62 0.48
127 30 0.23
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (126 bp):
TAAAGATCATGTTCTTTAGTGGCGTTTGTAAGAAAAGCGCCACTAAACGTCTATTTTATAGTGGC
GTTTGTGGAAAAGCACCGCTAAAGGTCTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCAC
Found at i:45450572 original size:24 final size:23
Alignment explanation
Indices: 45450540--45450624 Score: 107
Period size: 24 Copynumber: 3.6 Consensus size: 23
45450530 ACCAAACGTT
* **
45450540 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
45450564 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
45450588 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
45450612 GCACACATAGTGC
1 GCACACATAGTGC
45450625 ATTTGAGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
23 1 0.02
24 48 0.89
25 5 0.09
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:45453941 original size:19 final size:19
Alignment explanation
Indices: 45453917--45453953 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
45453907 GGTATTTTGT
45453917 ATTCAGGCTCACTAAGTTG
1 ATTCAGGCTCACTAAGTTG
45453936 ATTCAGGCTCACTAAGTT
1 ATTCAGGCTCACTAAGTT
45453954 CTTGTAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (19 bp):
ATTCAGGCTCACTAAGTTG
Found at i:45460049 original size:28 final size:29
Alignment explanation
Indices: 45459982--45460053 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
45459972 ATAGTGAATC
*
45459982 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
45460011 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
45460039 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45460054 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:45460075 original size:30 final size:28
Alignment explanation
Indices: 45459981--45460082 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
45459971 TATAGTGAAT
* *
45459981 CCGCACACTTAGTGCTATATATATTC-AGC
1 CCGCACACTTAGTGCTATACA-A-TCAAAC
* *
45460010 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
45460038 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
*
45460068 CCGCACACTCAGTGC
1 CCGCACACTTAGTGC
45460083 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:45461408 original size:26 final size:24
Alignment explanation
Indices: 45461372--45461420 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
45461362 ATCCACACTC
45461372 TTTTTTTTTTCATCATTTTCCTTT
1 TTTTTTTTTTCATCATTTTCCTTT
* *
45461396 TTTTTTTCATTTCTTTATTTTCCTT
1 TTTTTTT--TTTCATCATTTTCCTT
45461421 CCATAATGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
26 14 0.67
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTTTTTTTCATCATTTTCCTTT
Found at i:45461924 original size:46 final size:45
Alignment explanation
Indices: 45461874--45462049 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
45461864 TGGTTGAGCA
*
45461874 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
45461920 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
45461967 TCAGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * **
45462013 CCCGAGCTCGTTGAGTTGAGTCTAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45462050 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:45462041 original size:93 final size:93
Alignment explanation
Indices: 45461871--45462041 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
45461861 GGATGGTTGA
* * * *
45461871 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
45461936 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCAAGTTCGAGAGATGTAACTAG
* * *
45461964 GCATCAGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
45462029 TGAGTCTAAGTTC
66 TGAGTCCAAGTTC
45462042 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGAGAGATGTAACTAG
Found at i:45466098 original size:33 final size:33
Alignment explanation
Indices: 45466061--45466126 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
45466051 TCTTGATAAA
45466061 AGTAAAACTCTCATTTTAATCTAAATATATCTT
1 AGTAAAACTCTCATTTTAATCTAAATATATCTT
45466094 AGTAAAACTCTCATTTTAATCTAAATATATCTT
1 AGTAAAACTCTCATTTTAATCTAAATATATCTT
45466127 CTTGAATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (33 bp):
AGTAAAACTCTCATTTTAATCTAAATATATCTT
Found at i:45467088 original size:15 final size:15
Alignment explanation
Indices: 45467068--45467103 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
45467058 TATTGACTGG
45467068 TTAGGTCTTAATTGA
1 TTAGGTCTTAATTGA
*
45467083 TTAGGTCTTGATTGA
1 TTAGGTCTTAATTGA
45467098 TTAGGT
1 TTAGGT
45467104 AACTGATCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.06, G:0.25, T:0.47
Consensus pattern (15 bp):
TTAGGTCTTAATTGA
Found at i:45470953 original size:29 final size:30
Alignment explanation
Indices: 45470920--45470985 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
45470910 GATTTTGAGT
* * *
45470920 AAAAATGTCTATT-AGGGATTTAATTGTGA
1 AAAAATGTATATTGAGGGATTGAAATGTGA
*
45470949 AAAAA-GTATATTGAGGGGTTGAAATGTGA
1 AAAAATGTATATTGAGGGATTGAAATGTGA
45470978 AATAAATG
1 AA-AAATG
45470986 AAATTTTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 6 0.20
29 20 0.67
30 3 0.10
31 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.24, T:0.32
Consensus pattern (30 bp):
AAAAATGTATATTGAGGGATTGAAATGTGA
Found at i:45480655 original size:40 final size:40
Alignment explanation
Indices: 45480570--45480720 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
45480560 AATTGAATGA
* * *
45480570 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
45480610 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
45480651 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
45480690 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45480721 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:45480734 original size:40 final size:40
Alignment explanation
Indices: 45480607--45480736 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
45480597 ATGCTGGAAA
* * * *
45480607 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
45480647 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
45480687 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
45480727 TTATATCCGG
1 TTATATCCGG
45480737 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:45488229 original size:40 final size:40
Alignment explanation
Indices: 45488174--45488343 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
45488164 AACATTGGAA
45488174 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
45488214 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
45488254 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
45488293 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
45488334 CTATATCCGG
1 ATATATCCGG
45488344 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:45501692 original size:12 final size:12
Alignment explanation
Indices: 45501675--45501701 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45501665 CGATGTATGG
45501675 ATGAATGCACGA
1 ATGAATGCACGA
45501687 ATGAATGCACGA
1 ATGAATGCACGA
45501699 ATG
1 ATG
45501702 TCAAAATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.19
Consensus pattern (12 bp):
ATGAATGCACGA
Found at i:45506140 original size:3 final size:3
Alignment explanation
Indices: 45506123--45506185 Score: 110
Period size: 3 Copynumber: 21.0 Consensus size: 3
45506113 ATATGCATAT
45506123 ATA A-A ATA TATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
45506168 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
45506186 TGAAAATACA
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.03
3 53 0.91
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:45506666 original size:21 final size:22
Alignment explanation
Indices: 45506642--45506691 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
45506632 TTAGGGAAGG
45506642 GGAGAAAGA-AAAAAAAGGAGA
1 GGAGAAAGAGAAAAAAAGGAGA
* *
45506663 GGAG-AAGAGAGAAAAGGGAGA
1 GGAGAAAGAGAAAAAAAGGAGA
45506684 GGAGAAAG
1 GGAGAAAG
45506692 GAGAGAGGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.16
21 18 0.72
22 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (22 bp):
GGAGAAAGAGAAAAAAAGGAGA
Found at i:45509400 original size:2 final size:2
Alignment explanation
Indices: 45509387--45509432 Score: 74
Period size: 2 Copynumber: 22.5 Consensus size: 2
45509377 ACTTAATACT
*
45509387 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
45509430 TA T
1 TA T
45509433 GTAGTATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 39 0.95
3 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45509587 original size:25 final size:26
Alignment explanation
Indices: 45509553--45509603 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
45509543 ACATTATACC
45509553 ATGTATATAT-TTTTATAA-ATATTAT
1 ATGTATATATATTTT-TAATATATTAT
45509578 ATGTATATATATTTTTAATATATTAT
1 ATGTATATATATTTTTAATATATTAT
45509604 GTATATTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (26 bp):
ATGTATATATATTTTTAATATATTAT
Found at i:45510056 original size:18 final size:18
Alignment explanation
Indices: 45510035--45510076 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
45510025 ATATTCTTAC
45510035 TATTATCATTACTA-TATT
1 TATTATCATTACTATTA-T
*
45510053 TATTATCATTATTATTAT
1 TATTATCATTACTATTAT
45510071 TATTAT
1 TATTAT
45510077 TTTTATCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTATCATTACTATTAT
Found at i:45510066 original size:9 final size:9
Alignment explanation
Indices: 45510035--45510076 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
45510025 ATATTCTTAC
45510035 TATTATCAT
1 TATTATCAT
*
45510044 TACTAT-ATT
1 TATTATCA-T
45510053 TATTATCAT
1 TATTATCAT
*
45510062 TATTATTAT
1 TATTATCAT
45510071 TATTAT
1 TATTAT
45510077 TTTTATCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 1 0.04
9 26 0.93
10 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (9 bp):
TATTATCAT
Found at i:45513345 original size:26 final size:26
Alignment explanation
Indices: 45513289--45513338 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
45513279 AAGAGAATAA
*
45513289 ACAAAACACAAACCATGATAGTGTAG
1 ACAAAACAAAAACCATGATAGTGTAG
*
45513315 ACAAAACAAAAACTATGATAGTGT
1 ACAAAACAAAAACCATGATAGTGT
45513339 GGTCAAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.52, C:0.16, G:0.14, T:0.18
Consensus pattern (26 bp):
ACAAAACAAAAACCATGATAGTGTAG
Found at i:45517431 original size:38 final size:38
Alignment explanation
Indices: 45517380--45517458 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
45517370 CACATGGGAT
*
45517380 TCTGTTAGGTTCCTTTTTAATCAAATTAAGAGAGACAA
1 TCTGTTAAGTTCCTTTTTAATCAAATTAAGAGAGACAA
45517418 TCTGTTAAGTTCCTTTTTAATCAAATTAAGAGAGACAA
1 TCTGTTAAGTTCCTTTTTAATCAAATTAAGAGAGACAA
45517456 TCT
1 TCT
45517459 CTTTGTAGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (38 bp):
TCTGTTAAGTTCCTTTTTAATCAAATTAAGAGAGACAA
Found at i:45520841 original size:265 final size:269
Alignment explanation
Indices: 45520345--45520841 Score: 632
Period size: 265 Copynumber: 1.9 Consensus size: 269
45520335 TCTTCTCCCC
** * * * *
45520345 AAATAATGTAATTTATTTTATAAAGTAATGATATATTATTCATTATCCAACTGAGTTGATATCCG
1 AAATAATACAATTTATTATATAAAATAATGATATATTAGTCATTATACAACTGAGTTGATATCCG
* * * *
45520410 GTCGACTCGTGACATCAAATTCGTATACAAAATTTAATATTAATAGAGATATATGAATGATAAAA
66 GTCGACTCATGACATCAAATTCGAATACAAAATTTAAAATTAATAAAGATATATGAATGAT--AA
* * *
45520475 AAAACACTTTCGAAATAATATAATTTACTTTATTAGTAGAGATATATGAGCAGAAGTTGAAGCCC
129 AAAACACTATCGAAATAATATAATTTACTTTATTAGTAGAAATATATGAGCAGAAGCTGAAGCCC
* * * *
45520540 TAAAACTTGCAAATACATCCCTCTACATATTAAAGGAATATACGGAGAAATGAGTATTGTACATT
194 AAAAAATTACAAATACATCCCTCTACATAATAAAGGAATATACGGAGAAATGAGTATTGTACATT
45520605 AAACATCCTTG
259 AAACATCCTTG
* * *
45520616 AAATAATACAATTTATTATATAAAATAAT-AGTATATTCGTCATTATACAACTTAGTTGGTA-CC
1 AAATAATACAATTTATTATATAAAATAATGA-TATATTAGTCATTATACAACTGAGTTGATATCC
* * * * *
45520679 TGGTCGATTTATGACATTAAATTC-AATACAAGATTTAAAATTAGTAAAGATATATGAATGAT-A
65 -GGTCGACTCATGACATCAAATTCGAATACAAAATTTAAAATTAATAAAGATATATGAATGATAA
* *
45520742 AAAA-ACTATC-AAATAATATAATTTACTTTATTAGTAGAAATATATGAAG-AGAAGCTGGAGTC
129 AAAACACTATCGAAATAATATAATTTACTTTATTAGTAGAAATATATG-AGCAGAAGCTGAAGCC
*
45520804 CAAAAAATTACAAATACATCGCTCTAC-TCAATAAAGGA
193 CAAAAAATTACAAATACATCCCTCTACAT-AATAAAGGA
45520842 TTTAATACGA
Statistics
Matches: 194, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
264 1 0.01
265 76 0.39
266 7 0.04
267 5 0.03
270 36 0.19
271 69 0.36
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (269 bp):
AAATAATACAATTTATTATATAAAATAATGATATATTAGTCATTATACAACTGAGTTGATATCCG
GTCGACTCATGACATCAAATTCGAATACAAAATTTAAAATTAATAAAGATATATGAATGATAAAA
AACACTATCGAAATAATATAATTTACTTTATTAGTAGAAATATATGAGCAGAAGCTGAAGCCCAA
AAAATTACAAATACATCCCTCTACATAATAAAGGAATATACGGAGAAATGAGTATTGTACATTAA
ACATCCTTG
Found at i:45522329 original size:22 final size:23
Alignment explanation
Indices: 45522268--45522339 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
45522258 TGTGCCGCAA
*
45522268 CCACTACAACCAGCCCCATACCC
1 CCACTACAACAAGCCCCATACCC
45522291 CCACTACAACAAGCCCCATACCC
1 CCACTACAACAAGCCCCATACCC
* *
45522314 CCACTGCAACAA-CCCCATACCG
1 CCACTACAACAAGCCCCATACCC
45522336 CCAC
1 CCAC
45522340 AGTCCTCGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
22 13 0.28
23 33 0.72
ACGTcount: A:0.32, C:0.54, G:0.06, T:0.08
Consensus pattern (23 bp):
CCACTACAACAAGCCCCATACCC
Found at i:45522713 original size:9 final size:9
Alignment explanation
Indices: 45522691--45522731 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
45522681 TATACATACT
45522691 AAAATATATAA
1 AAAATA-AT-A
45522702 AAAATAATA
1 AAAATAATA
45522711 AAAAT-A-A
1 AAAATAATA
45522718 AAAATAATA
1 AAAATAATA
45522727 AAAAT
1 AAAAT
45522732 CAGATTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 6 0.21
8 2 0.07
9 12 0.43
10 2 0.07
11 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATAATA
Found at i:45522717 original size:16 final size:16
Alignment explanation
Indices: 45522698--45522731 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
45522688 ACTAAAATAT
45522698 ATAAAAAATAATAAAA
1 ATAAAAAATAATAAAA
45522714 ATAAAAAATAATAAAA
1 ATAAAAAATAATAAAA
45522730 AT
1 AT
45522732 CAGATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
ATAAAAAATAATAAAA
Found at i:45522853 original size:22 final size:23
Alignment explanation
Indices: 45522828--45522872 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
45522818 CCGGAGCTCC
45522828 CTCTCCCTCTCCCCT-TTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
*
45522850 CTCTCCCTCTCCTCTCTTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
45522873 TTTTTTCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (23 bp):
CTCTCCCTCTCCCCTCTTCTTTT
Found at i:45523669 original size:22 final size:22
Alignment explanation
Indices: 45523644--45523689 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
45523634 TTTCATATTA
45523644 TTAT-TATAATATTATTATATAT
1 TTATGTATAATATTA-TATATAT
*
45523666 TTATGTATATTATTATATATAT
1 TTATGTATAATATTATATATAT
45523688 TT
1 TT
45523690 TTAATGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTATGTATAATATTATATATAT
Found at i:45525390 original size:8 final size:8
Alignment explanation
Indices: 45525377--45525416 Score: 64
Period size: 8 Copynumber: 5.0 Consensus size: 8
45525367 GGCTCCGTAT
45525377 GCTCCAGC
1 GCTCCAGC
45525385 GCTCCAGC
1 GCTCCAGC
45525393 GCTCCTA-C
1 GCTCC-AGC
45525401 GCTCCAGC
1 GCTCCAGC
45525409 GCTCCAGC
1 GCTCCAGC
45525417 AGTCACGCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 1 0.03
8 28 0.93
9 1 0.03
ACGTcount: A:0.12, C:0.50, G:0.23, T:0.15
Consensus pattern (8 bp):
GCTCCAGC
Found at i:45525405 original size:24 final size:25
Alignment explanation
Indices: 45525368--45525416 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
45525358 CCAAAGCCTG
*
45525368 GCTCCGTATGCTCCAGCGCTCCAGC
1 GCTCCGTACGCTCCAGCGCTCCAGC
45525393 GCTCC-TACGCTCCAGCGCTCCAGC
1 GCTCCGTACGCTCCAGCGCTCCAGC
45525417 AGTCACGCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.12, C:0.47, G:0.22, T:0.18
Consensus pattern (25 bp):
GCTCCGTACGCTCCAGCGCTCCAGC
Found at i:45526988 original size:5 final size:5
Alignment explanation
Indices: 45526978--45527009 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
45526968 TTGTGTGTTC
45526978 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
45527010 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:45526992 original size:9 final size:9
Alignment explanation
Indices: 45526978--45527008 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
45526968 TTGTGTGTTC
45526978 TTTATTTTA
1 TTTATTTTA
45526987 TTTATTTTA
1 TTTATTTTA
45526996 TTTTATTTTA
1 -TTTATTTTA
45527006 TTT
1 TTT
45527009 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:45531415 original size:5 final size:5
Alignment explanation
Indices: 45531405--45531436 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
45531395 TTGTGTGTTC
45531405 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
45531437 TCACAACGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:45531419 original size:9 final size:9
Alignment explanation
Indices: 45531405--45531435 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
45531395 TTGTGTGTTC
45531405 TTTATTTTA
1 TTTATTTTA
45531414 TTTATTTTA
1 TTTATTTTA
45531423 TTTTATTTTA
1 -TTTATTTTA
45531433 TTT
1 TTT
45531436 TTCACAACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:45532331 original size:2 final size:2
Alignment explanation
Indices: 45532324--45532356 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45532314 TTTTATCACC
45532324 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45532357 TAGAACATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45532526 original size:19 final size:18
Alignment explanation
Indices: 45532502--45532538 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
45532492 TCTCCTTTCC
45532502 CCTCTCCCTCCTCTCTCTT
1 CCTCTCCCTCCT-TCTCTT
*
45532521 CCTCTCCCTTCTTCTCTT
1 CCTCTCCCTCCTTCTCTT
45532539 TTTTTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (18 bp):
CCTCTCCCTCCTTCTCTT
Found at i:45533315 original size:2 final size:2
Alignment explanation
Indices: 45533310--45533355 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
45533300 CATATACTTT
* * *
45533310 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA CA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45533352 TA TA
1 TA TA
45533356 CTTTTATATC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45535870 original size:131 final size:130
Alignment explanation
Indices: 45535633--45535892 Score: 360
Period size: 131 Copynumber: 2.0 Consensus size: 130
45535623 TAATTATTCT
* *
45535633 TTTAAAAATTCTCTAAAACGAAGGCAATACTCGATGTTTAGCAATTCGGGAATCGTGCTCTATCG
1 TTTAAAAACTCTCTAAAACGAAGGCAATACTCGATGTTTAGCAATTCGGGAATCGTGCCCTATCG
* ** *
45535698 TGCTGGGTTACGATTTCCCATTTGTTCAAAACAATTGAATATTCCTTTGGAATTTCACTCATGTC
66 TGCTAGGTTACGATTTCCCATTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCATGTC
* * *
45535763 TTTAAAAACTCT-TCAAAACGAAGGTAATACTCGATGTTTGGCAATTTGGGGAATCGTGCCCTAT
1 TTTAAAAACTCTCT-AAAACGAAGGCAATACTCGATGTTTAGCAA-TTCGGGAATCGTGCCCTAT
** *** *
45535827 CGTGCTAGGTTGTGATTTCTTGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTCACTCATG
64 CGTGCTAGGTTACGATTTCCCATTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCATG
45535892 T
129 T
45535893 TCTCTAAATT
Statistics
Matches: 113, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
129 1 0.01
130 39 0.35
131 73 0.65
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (130 bp):
TTTAAAAACTCTCTAAAACGAAGGCAATACTCGATGTTTAGCAATTCGGGAATCGTGCCCTATCG
TGCTAGGTTACGATTTCCCATTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCATGTC
Found at i:45538447 original size:2 final size:2
Alignment explanation
Indices: 45538434--45538470 Score: 65
Period size: 2 Copynumber: 18.0 Consensus size: 2
45538424 TTTGGATGTA
45538434 AT AT AGT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45538471 TATCAAGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45539635 original size:42 final size:42
Alignment explanation
Indices: 45539572--45539735 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
45539562 CTTCGTTTTC
**
45539572 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACAT-A
* * *
45539615 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATA
*
45539656 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC---AT--C-T-TCACATA
45539705 TCGATGCCATAGCCCAACTATGGTCTTACAC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC
45539736 GAATCACATA
Statistics
Matches: 105, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.60
43 1 0.01
45 2 0.02
48 1 0.01
49 36 0.34
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATA
Found at i:45539715 original size:49 final size:48
Alignment explanation
Indices: 45539642--45539774 Score: 180
Period size: 49 Copynumber: 2.8 Consensus size: 48
45539632 TATGGTCTTA
* *
45539642 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAACTATGGTCTTACACG-AAT
45539692 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACGAAT
* * * *
45539740 CACATATCTCA-CT-GATGCCATATCCCAAATATGGT
1 CACATATCACATATCGATGCCATAGCCCAACTATGGT
45539775 ATTATACAGT
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
46 20 0.26
47 1 0.01
48 13 0.17
49 37 0.48
50 6 0.08
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTACACGAAT
Found at i:45539773 original size:46 final size:47
Alignment explanation
Indices: 45539657--45539824 Score: 142
Period size: 47 Copynumber: 3.6 Consensus size: 47
45539647 ATTCATATAT
* ** * * *
45539657 CGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCACATAT
1 CGATGCCATATCCCAAATATGGTCTTACACAG-AAGCACACATCAC--AC
* * * * *
45539706 CGATGCCATAGCCCAACTATGGTCTTACAC-GAATCACATATCTCAC
1 CGATGCCATATCCCAAATATGGTCTTACACAGAAGCACACATCACAC
* * * * *
45539752 TGATGCCATATCCCAAATATGGTATTATACAGTAGCATACATCACAC
1 CGATGCCATATCCCAAATATGGTCTTACACAGAAGCACACATCACAC
*
45539799 CGATGCCATATCCCAGATATGGTCTT
1 CGATGCCATATCCCAAATATGGTCTT
45539825 GTACGGAAAT
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
46 26 0.25
47 34 0.33
48 12 0.12
49 30 0.29
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (47 bp):
CGATGCCATATCCCAAATATGGTCTTACACAGAAGCACACATCACAC
Found at i:45539882 original size:31 final size:31
Alignment explanation
Indices: 45539847--45539993 Score: 206
Period size: 31 Copynumber: 4.7 Consensus size: 31
45539837 CTTGTCACTT
* *
45539847 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
45539878 GTAGCCGGTA-TTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
45539909 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
45539940 GTATCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
45539971 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
45539994 TTTTCACTTT
Statistics
Matches: 104, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
30 2 0.02
31 101 0.97
32 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:45540362 original size:2 final size:2
Alignment explanation
Indices: 45540355--45540400 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
45540345 CGAGTCATTC
45540355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45540397 AT AT
1 AT AT
45540401 TTTTCCTCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45546244 original size:5 final size:5
Alignment explanation
Indices: 45546236--45546297 Score: 56
Period size: 5 Copynumber: 11.8 Consensus size: 5
45546226 GCAAAAATAA
*
45546236 AAAAT AAAAAT AAAAT AAAAT -AAAT -AAAG AAAAT AAAAATT AGAAAT
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAA-T A-AAAT
45546283 AAAAAT AAAAT AAAA
1 -AAAAT AAAAT AAAA
45546298 GAAACATGTT
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
4 7 0.14
5 22 0.45
6 15 0.31
7 5 0.10
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:45546246 original size:13 final size:13
Alignment explanation
Indices: 45546228--45546292 Score: 69
Period size: 13 Copynumber: 4.8 Consensus size: 13
45546218 TGTAATAAGC
45546228 AAAAATAAAAAAT
1 AAAAATAAAAAAT
45546241 AAAAATAAAATAA-
1 AAAAATAAAA-AAT
45546254 AATAAATAAAGAAAAT
1 AA-AAAT-AA-AAAAT
* *
45546270 AAAAATTAGAAAT
1 AAAAATAAAAAAT
45546283 AAAAATAAAA
1 AAAAATAAAA
45546293 TAAAAGAAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
13 24 0.56
14 7 0.16
15 8 0.19
16 4 0.09
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:45547412 original size:9 final size:9
Alignment explanation
Indices: 45547398--45547442 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
45547388 CTCTCTTCTA
45547398 TTTTTGTAT
1 TTTTTGTAT
45547407 TTTTTGTA-
1 TTTTTGTAT
* *
45547415 TTTTTGAAG
1 TTTTTGTAT
45547424 TTTTTGTAT
1 TTTTTGTAT
*
45547433 TTTTTCTAT
1 TTTTTGTAT
45547442 T
1 T
45547443 GCGTCCCTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
8 7 0.23
9 24 0.77
ACGTcount: A:0.13, C:0.02, G:0.11, T:0.73
Consensus pattern (9 bp):
TTTTTGTAT
Found at i:45547418 original size:17 final size:17
Alignment explanation
Indices: 45547396--45547436 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
45547386 TTCTCTCTTC
* *
45547396 TATTTTTGTATTTTTTG
1 TATTTTTGAAGTTTTTG
45547413 TATTTTTGAAGTTTTTG
1 TATTTTTGAAGTTTTTG
45547430 TATTTTT
1 TATTTTT
45547437 TCTATTGCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (17 bp):
TATTTTTGAAGTTTTTG
Found at i:45548827 original size:18 final size:17
Alignment explanation
Indices: 45548785--45548829 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
45548775 GAAAAATGAG
45548785 AAATTTT-AAAACACGA
1 AAATTTTGAAAACACGA
45548801 AAATTTTGAAAACACGA
1 AAATTTTGAAAACACGA
45548818 AAATTTTTGAAA
1 AAA-TTTTGAAA
45548830 CCTGAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 7 0.26
17 12 0.44
18 8 0.30
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (17 bp):
AAATTTTGAAAACACGA
Found at i:45549995 original size:29 final size:28
Alignment explanation
Indices: 45549959--45550131 Score: 179
Period size: 29 Copynumber: 5.8 Consensus size: 28
45549949 CTTTTTTGGT
45549959 TTTTTTTGCTGGAAATTTTTTGCTGGAA
1 TTTTTTTGCTGGAAATTTTTTGCTGGAA
*
45549987 TTTTCTTTGCT-GAAATTTTTTGGCTAGAA
1 TTTT-TTTGCTGGAAATTTTTT-GCTGGAA
45550016 -TTTTTTGCTGGAAATTTTTTTGCTGGAA
1 TTTTTTTGCTGGAAA-TTTTTTGCTGGAA
*
45550044 TTTTTTTGCTGGAATTTTTTTTGCTGCTGGAA
1 TTTTTTTGCTGGAA--ATTTTT--TGCTGGAA
*
45550076 TTTTTTTGCTAGAAAAATTTTCTTGCTGCTGGAA
1 TTTTTTTGCT-G-GAAA-TTT-TT--TGCTGGAA
45550110 TTTTTTTGCTGGAAAATTTTTT
1 TTTTTTTGCTGG-AAATTTTTT
45550132 TTGCTTCCCC
Statistics
Matches: 125, Mismatches: 6, Indels: 27
0.79 0.04 0.17
Matches are distributed among these distances:
27 6 0.05
28 27 0.22
29 32 0.26
30 5 0.04
31 2 0.02
32 21 0.17
33 8 0.06
34 24 0.19
ACGTcount: A:0.18, C:0.09, G:0.19, T:0.54
Consensus pattern (28 bp):
TTTTTTTGCTGGAAATTTTTTGCTGGAA
Found at i:45550083 original size:17 final size:17
Alignment explanation
Indices: 45550021--45550120 Score: 95
Period size: 17 Copynumber: 6.1 Consensus size: 17
45550011 TAGAATTTTT
*
45550021 TGCTGGAAATTTTTT--
1 TGCTGGAATTTTTTTGC
45550036 TGCTGGAA-TTTTTT--
1 TGCTGGAATTTTTTTGC
45550050 TGCTGGAATTTTTTTTGC
1 TGCTGGAA-TTTTTTTGC
45550068 TGCTGGAATTTTTTTGC
1 TGCTGGAATTTTTTTGC
*** *
45550085 TAG-AAAAATTTTCTTGC
1 T-GCTGGAATTTTTTTGC
45550102 TGCTGGAATTTTTTTGC
1 TGCTGGAATTTTTTTGC
45550119 TG
1 TG
45550121 GAAAATTTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
14 14 0.20
15 8 0.11
16 7 0.10
17 33 0.46
18 9 0.13
ACGTcount: A:0.17, C:0.10, G:0.21, T:0.52
Consensus pattern (17 bp):
TGCTGGAATTTTTTTGC
Found at i:45550136 original size:17 final size:15
Alignment explanation
Indices: 45549959--45550132 Score: 173
Period size: 14 Copynumber: 11.5 Consensus size: 15
45549949 CTTTTTTGGT
45549959 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
45549974 -TTTTTTGCTGG-AA
1 TTTTTTTGCTGGAAA
45549987 TTTTCTTTGCT-GAAA
1 TTTT-TTTGCTGGAAA
* *
45550002 TTTTTTGGCTAG-AA
1 TTTTTTTGCTGGAAA
45550016 -TTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
45550030 TTTTTTTGCTGG-AA
1 TTTTTTTGCTGGAAA
*
45550044 TTTTTTTGCTGGAAT
1 TTTTTTTGCTGGAAA
*
45550059 TTTTTTTGCTGCTGGAA
1 TTTTTTTGCTG--GAAA
*
45550076 TTTTTTTGCTAGAAAAA
1 TTTTTTTGCT-G-GAAA
45550093 TTTTCTTGCTGCTGG-AA
1 TTTT-TT--TGCTGGAAA
45550110 TTTTTTTGCTGGAAAA
1 TTTTTTTGCTGG-AAA
45550126 TTTTTTT
1 TTTTTTT
45550133 TGCTTCCCCC
Statistics
Matches: 134, Mismatches: 10, Indels: 29
0.77 0.06 0.17
Matches are distributed among these distances:
13 11 0.08
14 44 0.33
15 36 0.27
16 11 0.08
17 24 0.18
18 3 0.02
19 1 0.01
20 4 0.03
ACGTcount: A:0.18, C:0.09, G:0.19, T:0.54
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:45550562 original size:25 final size:25
Alignment explanation
Indices: 45550531--45550578 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
45550521 TCTTTACTTA
45550531 TTGTCGTGTAACGAGAACAGAGTTG
1 TTGTCGTGTAACGAGAACAGAGTTG
*
45550556 TTGTCGTGTAACGAGAATAGAGT
1 TTGTCGTGTAACGAGAACAGAGT
45550579 AAAGACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TTGTCGTGTAACGAGAACAGAGTTG
Found at i:45551134 original size:13 final size:13
Alignment explanation
Indices: 45551116--45551140 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45551106 TTTGAAACAT
45551116 AGAAATTAAAAGC
1 AGAAATTAAAAGC
45551129 AGAAATTAAAAG
1 AGAAATTAAAAG
45551141 GCTCAACTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (13 bp):
AGAAATTAAAAGC
Found at i:45551271 original size:68 final size:67
Alignment explanation
Indices: 45551072--45551263 Score: 179
Period size: 68 Copynumber: 2.8 Consensus size: 67
45551062 AGGTGAACTG
** * * * * ** * *
45551072 AGGCTCAACTCATTTCTCGCAATATGGGTTGATTTTTGAAACATAGAAATTAAAAGCAGAAATTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAATAAAAAAAAAAAACAAAAATTA
45551137 AA
66 AA
* * * ***** *
45551139 AGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAAAAACGAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-ATTTGAAAAATA-AAAAAAAAAAACAAAAAT
45551204 T-AA
64 TAAA
45551207 AGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAATTAAAAAAAAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAA-TAAAAAAAAAAAA
45551264 TTAAAAATAC
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
67 43 0.44
68 44 0.45
69 11 0.11
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (67 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAATAAAAAAAAAAAACAAAAATTA
AA
Found at i:45551348 original size:83 final size:81
Alignment explanation
Indices: 45551207--45551671 Score: 255
Period size: 78 Copynumber: 5.5 Consensus size: 81
45551197 CGAAAATTAA
* *
45551207 AGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAATTAAAAAAAAAAAATTAAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAATTAAAAAAAAAAAATTAAAAAT
45551272 ACCTCAGCACGTGAGC-TG
66 ACCTCAGCA--TG-GCTTG
* ***** * * * *
45551290 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTTTTTAAAGAACAGAAATTAAAACT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAATTAAAAAAAAAAAATTAAAAAT
*
45551355 ACCTCAGCATGTCTTG
66 ACCTCAGCATGGCTTG
**
45551371 AGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTCTGAAAAAACAGAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-T-AAAAATTA-AA----AAAAA-A-A
* * ** **
45551436 ATTTGAAAATACCTCAACGTGTGAGC-CA
56 AATTAAAAATACCTC-A-GCATG-GCTTG
* * *
45551464 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACA-GAAATTGGAGAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-AAA-A-ATTAAA----A-AAAAAAA
* * * * **
45551528 ATGGAAAAACACCTCAGAATATGACCCG
57 AT-TAAAAATACCTCAG--CATGGCTTG
* *
45551556 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-----TT-AAACACAAAAATTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAATTAAAAAAAAAAAATT-AAAAA
* * **
45551615 CACCTCAGCGTATGACCCG
65 TACCTCAGC--ATGGCTTG
*
45551634 AGGCTCAACTCACCACTCGCAATATGAGTTGATTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
45551672 GATGATCAAT
Statistics
Matches: 307, Mismatches: 50, Indels: 55
0.75 0.12 0.13
Matches are distributed among these distances:
78 65 0.21
79 1 0.00
80 1 0.00
81 35 0.11
82 5 0.02
83 65 0.21
84 1 0.00
85 2 0.01
89 3 0.01
90 1 0.00
91 24 0.08
92 57 0.19
93 45 0.15
94 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (81 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAATTAAAAAAAAAAAATTAAAAAT
ACCTCAGCATGGCTTG
Found at i:45551408 original size:81 final size:81
Alignment explanation
Indices: 45551207--45551670 Score: 253
Period size: 83 Copynumber: 5.5 Consensus size: 81
45551197 CGAAAATTAA
*
45551207 AGGCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAATTAAAAAAAAAAAATTAAAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTAAAAATTAAAAAAAAAAAATTAAAAAT
45551272 ACCTCAGCACGTGAGCTG
65 ACCTCAGCAC-TGAGCTG
* ***** * * * *
45551290 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTTTTTAAAGAACAGAAATTAAAACT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAATTAAAAAAAAAAAATTAAAAAT
*
45551355 ACCTCAGCA-TG-TCTTG
65 ACCTCAGCACTGAGC-TG
** *
45551371 AGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTCTGAAAAAACAGAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT-T-AAAAATTA-AA----AAAAA-AAA
* * ** **
45551436 ATTTGAAAATACCTCAACGTGTGAGCCA
56 ATT-AAAAATACCTCAGC-ACTGAGCTG
* * *
45551464 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACA-GAAATTGGAGAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-AAA-A-ATTAAA----A-AAAAAAA
* * * * * *
45551528 ATGGAAAAACACCTCAGAATATGACCCG
56 AT-TAAAAATACCTCAGCA-CTGAGCTG
* * * *
45551556 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-----TTTAAACACAAAAATTGAAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAATTAAAAAAAAAAAATT-AAAAAT
* *
45551616 ACCTCAGCGTA-TGACCCG
65 ACCTCAGC--ACTGAGCTG
*
45551634 AGGCTCAACTCACCACTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
45551671 TGATGATCAA
Statistics
Matches: 304, Mismatches: 53, Indels: 53
0.74 0.13 0.13
Matches are distributed among these distances:
78 63 0.21
79 1 0.00
80 2 0.01
81 35 0.12
82 5 0.02
83 64 0.21
84 2 0.01
85 2 0.01
89 3 0.01
90 9 0.03
91 11 0.04
92 61 0.20
93 44 0.14
94 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (81 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAATTAAAAAAAAAAAATTAAAAATA
CCTCAGCACTGAGCTG
Found at i:45551444 original size:13 final size:14
Alignment explanation
Indices: 45551413--45551444 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
45551403 CTTTTTCTGA
45551413 AAAAACAGAATTTG
1 AAAAACAGAATTTG
45551427 AAAAACAGAATTTG
1 AAAAACAGAATTTG
45551441 AAAA
1 AAAA
45551445 TACCTCAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (14 bp):
AAAAACAGAATTTG
Found at i:45551574 original size:92 final size:91
Alignment explanation
Indices: 45551370--45551616 Score: 325
Period size: 92 Copynumber: 2.7 Consensus size: 91
45551360 AGCATGTCTT
* * *
45551370 GAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTCTGAAAAAACAGAATTTGAAAAACAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG-AAACACAGAAATTGAAAAACAG
* * * * * *
45551435 AATTTGAAAATACCTCAACGTGTGAGCC
64 AAATGGAAAACACCTCAACATATGACCC
* * *
45551463 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGGAGAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAAACAGAA
45551528 ATGGAAAAACACCTCAGA-ATATGACCC
66 ATGG-AAAACACCTCA-ACATATGACCC
* *
45551555 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAACACAAAAATTGAAAAACA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAAACA
45551617 CCTCAGCGTA
Statistics
Matches: 135, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
91 22 0.16
92 80 0.59
93 33 0.24
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (91 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTGAAAAACAGAA
ATGGAAAACACCTCAACATATGACCC
Found at i:45551660 original size:78 final size:78
Alignment explanation
Indices: 45551526--45551671 Score: 256
Period size: 78 Copynumber: 1.9 Consensus size: 78
45551516 TGGAGAACAG
*
45551526 AAATGGAAAAACACCTCAGAATATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATGGAAAAACACCTCAGAATATGACCCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTT
45551591 TTTTTAAACACAA
66 TTTTTAAACACAA
* **
45551604 AAATTGAAAAACACCTCAGCGTATGACCCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTT
1 AAATGGAAAAACACCTCAGAATATGACCCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTT
45551669 TTT
66 TTT
45551672 GATGATCAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 64 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (78 bp):
AAATGGAAAAACACCTCAGAATATGACCCGAGGCTCAACTCACCACTCGCAATATGAGTTGATTT
TTTTTAAACACAA
Found at i:45551813 original size:159 final size:148
Alignment explanation
Indices: 45551747--45552206 Score: 507
Period size: 147 Copynumber: 3.0 Consensus size: 148
45551737 TTTTTTTTAT
* * *
45551747 TTTTTTTTTTGAAAGACAGAGATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
1 TTTTATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTC-TGAGGCTCAACTCACCTCTCG
* * * *
45551812 CAATATGAGTTGATTTTTGAAAAATAAATTGAAAATATCTCAGCGTGCCCTGAGGCTCAACTCAC
65 CAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
45551877 CTCTCGCAATATGAGTTGA
130 CTCTCGCAATATGAGTTGA
*** * * *
45551896 TTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAAC
1 TTTT-------A-TTTTTGAAAAACAGAAATTGAAAATACCTCA--ACGTG-TCTGAGGCTCAAC
* * * * *
45551961 TCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTTAAATTACCTCAACGTGTCTTGAG
55 TCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ATAAATTGAAAATACCTCAACGTGTCTTGAG
45552026 GCTCAACTCACCTCTCGCAATATGAGTTG-
119 GCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
45552055 ----ATTTTTGAAAAATATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
1 TTTTATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGT-CTGAGGCTCAACTCACCTCTCG
* * *
45552116 CAATATGAGTTGATTTTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACT
65 CAATATGAGTTGA-TTTTTGA-AAA-ATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACT
45552181 CACCTCTCGCAATATGAGTTGA
127 CACCTCTCGCAATATGAGTTGA
45552203 TTTT
1 TTTT
45552207 GAAAAAGTAG
Statistics
Matches: 257, Mismatches: 34, Indels: 37
0.78 0.10 0.11
Matches are distributed among these distances:
145 36 0.14
146 6 0.02
147 85 0.33
148 1 0.00
149 4 0.02
157 26 0.10
159 45 0.18
160 54 0.21
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.30
Consensus pattern (148 bp):
TTTTATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGA
Found at i:45551843 original size:71 final size:71
Alignment explanation
Indices: 45551768--45551899 Score: 228
Period size: 71 Copynumber: 1.9 Consensus size: 71
45551758 AAAGACAGAG
* *
45551768 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
45551833 AAATAA
66 AAATAA
* *
45551839 ATTGAAAATATCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
45551900 GACGAACAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (71 bp):
ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
AAATAA
Found at i:45551921 original size:14 final size:14
Alignment explanation
Indices: 45551904--45551932 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45551894 GATTTTGACG
45551904 AACAGAAATTGAAA
1 AACAGAAATTGAAA
45551918 AACAGAAATTGAAA
1 AACAGAAATTGAAA
45551932 A
1 A
45551933 TACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:45551941 original size:86 final size:87
Alignment explanation
Indices: 45551837--45552001 Score: 246
Period size: 88 Copynumber: 1.9 Consensus size: 87
45551827 TTTGAAAAAT
*
45551837 AAATTGAAAATATCTCAGC-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTT
1 AAATTGAAAATACCTCAGCAGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
*
45551899 TGACGAACAGAAATTGAAAAACAG
65 TGA-AAACAGAAATTGAAAAACAG
* *
45551923 AAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTT
1 AAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
45551988 TGAAAACAGAAATT
65 TGAAAACAGAAATT
45552002 TAAATTACCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
86 18 0.25
88 44 0.62
89 9 0.13
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (87 bp):
AAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
GAAAACAGAAATTGAAAAACAG
Found at i:45552108 original size:73 final size:73
Alignment explanation
Indices: 45551912--45552221 Score: 437
Period size: 74 Copynumber: 4.2 Consensus size: 73
45551902 CGAACAGAAA
* * *
45551912 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACTTCTCGCAATA
1 TTGAAAAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
*
45551976 TGAGTTGAATT
63 TGAGTTGATTT
* * *
45551987 TTG-AAAACAGAAATTTAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
45552051 GTTGATTT
66 GTTGATTT
* *
45552059 TTGAAAAATATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
45552124 GTTGATTTT
66 GTTGA-TTT
* * *
45552133 TTGACAAACATAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
45552198 GTTGA-TT
66 GTTGATTT
*
45552205 TTGAAAAAGTAGAAATT
1 TTGAAAAA-CAGAAATT
45552222 AAAAGGTTCA
Statistics
Matches: 213, Mismatches: 18, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
71 1 0.00
72 49 0.23
73 67 0.31
74 93 0.44
75 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:45552289 original size:127 final size:126
Alignment explanation
Indices: 45552097--45552456 Score: 489
Period size: 127 Copynumber: 2.9 Consensus size: 126
45552087 GCGTGTCCTG
45552097 AGGC-TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACATAAATTGAAATTACCTCA
1 AGGCTTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGACAAACATAAATTGAAATTACCTCA
* * *
45552161 GCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAA
64 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA-CAAAAATTAAA
* *
45552225 AGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTACCTCAG
1 AGGCTTCAACTCACCTCTCGCAATATGAGTTGATT-TTGACAAACATAAATTGAAATTACCTCAG
* *
45552289 CGTGTCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAAAACAAAAATTAAA
65 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAA
* * * * * *
45552352 AGGCTT-AACTCACCTCTCGCAATATGAG-TCAATTT-A-GAACATAAACTAAAAATACCTCAGC
1 AGGCTTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACATAAATTGAAATTACCTCAGC
* * *
45552413 GTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
66 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
45552457 TTCGACAAAC
Statistics
Matches: 208, Mismatches: 20, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
122 4 0.02
123 55 0.26
124 1 0.00
125 2 0.01
126 5 0.02
127 99 0.48
128 42 0.20
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (126 bp):
AGGCTTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACATAAATTGAAATTACCTCAGC
GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:45552504 original size:75 final size:73
Alignment explanation
Indices: 45552352--45552626 Score: 360
Period size: 75 Copynumber: 3.7 Consensus size: 73
45552342 AAAAATTAAA
* * * * * *
45552352 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTT-AGAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
*
45552413 GTGCCCCG
66 GTGCCCTG
* *
45552421 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCGACAAACATAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-GA-AAACATAAATTGAAAATACCTCA
*
45552486 GCGTGTCCTG
64 GCGTGCCCTG
*
45552496 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAA-C-ATAAATTGAAAATACCTC
45552561 AGCGTGCCCTG
63 AGCGTGCCCTG
*
45552572 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTGAA
45552627 GAAAACAGAA
Statistics
Matches: 180, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
69 26 0.14
70 2 0.01
72 3 0.02
74 13 0.07
75 69 0.38
76 67 0.37
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
GTGCCCTG
Found at i:45552633 original size:16 final size:16
Alignment explanation
Indices: 45552612--45552642 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45552602 GATTTTTTGA
*
45552612 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
45552628 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
45552643 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:45552698 original size:90 final size:89
Alignment explanation
Indices: 45552545--45552807 Score: 413
Period size: 90 Copynumber: 2.9 Consensus size: 89
45552535 GAAAAGCAAA
*
45552545 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45552610 GAAAAACATAAATTGAAGAAAACAG
66 GAAAAGCATAAATTGAA-AAAACAG
* * *
45552635 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45552699 GAAAAGCATAAATTG-AAAAACGG
66 GAAAAGCATAAATTGAAAAAACAG
*
45552722 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
45552787 TTGAAAAGCATGAATTGAAAA
64 TTGAAAAGCATAAATTGAAAA
45552808 TACCTCAACG
Statistics
Matches: 158, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
87 61 0.39
88 1 0.01
89 19 0.12
90 74 0.47
91 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCATAAATTGAAAAAACAG
Found at i:45552843 original size:76 final size:76
Alignment explanation
Indices: 45552711--45552933 Score: 269
Period size: 76 Copynumber: 3.0 Consensus size: 76
45552701 AAAGCATAAA
* * * *
45552711 TTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
45552776 GTTGATTTTTT
66 GTTGATTTTTT
* * * * **
45552787 TTGA-AAAGCATG-AATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATAT
1 TTGACAAA-CA-GAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
*
45552850 GAGTTGA---GTT
64 GAGTTGATTTTTT
*
45552860 TTGACAAACAGAAATT-AAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAATTGAAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
45552924 AGTTGATTTT
65 AGTTGATTTT
45552934 GAAAAAGTAG
Statistics
Matches: 121, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
72 5 0.04
73 54 0.45
74 3 0.02
75 3 0.02
76 55 0.45
77 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (76 bp):
TTGACAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:45552909 original size:73 final size:73
Alignment explanation
Indices: 45552711--45552952 Score: 271
Period size: 73 Copynumber: 3.3 Consensus size: 73
45552701 AAAGCATAAA
* * *
45552711 TTGAAAAA-CGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATG
1 TTGAAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
45552775 AGTTGATTTTTT
66 AGTTGA----TT
* * * * **
45552787 TTG-AAAAGCATG-AATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATAT
1 TTGAAAAAGCA-GAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
45552850 GAGTTGAGTT
65 GAGTTGA-TT
* *
45552860 TTGACAAA-CAGAAATT-AAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAAGCAGAAATTGAAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
45552923 GAGTTGATT
65 GAGTTGATT
*
45552932 TTGAAAAAGTAGAAATT-AAAA
1 TTGAAAAAGCAGAAATTGAAAA
45552953 GGTTCAACCC
Statistics
Matches: 140, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
72 14 0.10
73 64 0.46
74 3 0.02
75 4 0.03
76 54 0.39
77 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:45553065 original size:127 final size:126
Alignment explanation
Indices: 45552839--45553197 Score: 433
Period size: 127 Copynumber: 2.8 Consensus size: 126
45552829 TCGACTCATT
* * *
45552839 TCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTC
1 TCTCGCAATATGAGTTGA-TTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTC
* *
45552904 AACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACC
65 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CAAAAATTAAAAGGCTT-AACCCACC
* * *
45552966 TCTCGTAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGATT-TTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTC
* * *
45553031 AACTCACTTCTCG-GATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACC
65 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACCCACC
* * * * * * * * *
45553092 TCTCGCAATATGAG-TCAATTT-A-GAACATAAACTAAAAATACCTTAGCGTGCCCCGAGGTTCA
1 TCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTCA
*
45553154 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAA
66 ACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAAAAA
45553198 ATTGAAAATA
Statistics
Matches: 200, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
122 42 0.21
123 12 0.06
124 2 0.01
125 19 0.09
126 45 0.22
127 80 0.40
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (126 bp):
TCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACCCACC
Found at i:45553221 original size:651 final size:652
Alignment explanation
Indices: 45552464--45554095 Score: 2863
Period size: 651 Copynumber: 2.5 Consensus size: 652
45552454 TTTTTCGACA
* * * * * *
45552464 AACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
45552529 TTTTTTGAAAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
66 TTTTTTGAAAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
45552594 TATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTC
131 TATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTC
45552659 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACGGAA
196 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACGGAA
45552724 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTT
261 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTT
45552789 GAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATGAGT
326 GAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATGAGT
45552854 TGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCA
391 TGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCA
45552919 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGTAATATGAGTTGA
456 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGTAATATGAGTTGA
45552984 TTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTC-GGATA
521 TTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGGGATA
45553048 TGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
586 TGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
45553113 AG
651 AG
*
45553115 AACATAAACTAAAAATACCTTAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
45553180 TTTTTTGAAAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
66 TTTTTTGAAAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
45553245 TATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTC
131 TATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTC
45553310 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACGGAA
196 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACGGAA
45553375 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTT
261 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTT
45553440 GAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATGAGT
326 GAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATGAGT
45553505 TGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCA
391 TGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCA
45553570 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGTAATATGAGTTGA
456 ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGTAATATGAGTTGA
45553635 TTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGGGATA
521 TTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGGGATA
45553700 TGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
586 TGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
45553765 AG
651 AG
45553767 AACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
* * * *
45553832 TTTTTCGACAAA-C-ATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 TTTTTTGA-AAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCA
* * * * * *
45553895 ATATGAGTTGATTTTTT--------TGAA---AAG-CAA-A-AAATTGAAAATACCTCAGCGTGC
130 ATATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGT
* *
45553946 CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAAC
195 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGCATAAATTG-A-AAAAC
* * * * *
45554011 AGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---T
257 GGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTT
*
45554073 TTTTGAAAAGCATAAATTGAAAA
322 TTTTGAAAAGCATGAATTGAAAA
45554096 ACGGAAATTG
Statistics
Matches: 950, Mismatches: 26, Indels: 24
0.95 0.03 0.02
Matches are distributed among these distances:
637 78 0.08
638 20 0.02
639 3 0.00
640 64 0.07
643 3 0.00
651 635 0.67
652 144 0.15
653 3 0.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (652 bp):
AACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTC
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAACGGAA
ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTT
GAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATGAGT
TGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGTAATATGAGTTGA
TTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGGGATA
TGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AG
Found at i:45553256 original size:76 final size:75
Alignment explanation
Indices: 45553126--45553265 Score: 235
Period size: 76 Copynumber: 1.9 Consensus size: 75
45553116 ACATAAACTA
* * *
45553126 AAAATACCTTAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTGAAAA
45553191 GCAAAAAATTG
65 GCAAAAAATTG
*
45553202 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAA
1 AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAA
45553266 ACATAAATTG
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
75 11 0.18
76 49 0.82
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (75 bp):
AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAG
CAAAAAATTG
Found at i:45553266 original size:69 final size:68
Alignment explanation
Indices: 45553078--45553266 Score: 191
Period size: 76 Copynumber: 2.6 Consensus size: 68
45553068 AAAAATTAAA
* * * * *
45553078 AGGCTTAACTCACCTCTCGCAATATGAGTCA-ATTTAGAACATAAACTAAAAATACCTTAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTGATTTTTTGAA-A-AAACTAAAAATACCTCAGCGTG
45553142 CCCCG
64 CCCCG
* * *
45553147 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAG-TGA-TTTTTT-----G-AAAAAACTAAAAATACCTC
*
45553212 AGCGTGCCCTG
58 AGCGTGCCCCG
45553223 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAG-TGATTTTTTGAAAAA
45553267 CATAAATTGA
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
69 31 0.31
70 3 0.03
72 3 0.03
75 6 0.06
76 53 0.53
77 2 0.02
78 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (68 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTGATTTTTTGAAAAAACTAAAAATACCTCAGCGTGCC
CCG
Found at i:45553284 original size:16 final size:16
Alignment explanation
Indices: 45553263--45553293 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45553253 GATTTTTTGA
*
45553263 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
45553279 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
45553294 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:45553349 original size:90 final size:89
Alignment explanation
Indices: 45553196--45553458 Score: 413
Period size: 90 Copynumber: 2.9 Consensus size: 89
45553186 GAAAAGCAAA
*
45553196 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45553261 GAAAAACATAAATTGAAGAAAACAG
66 GAAAAGCATAAATTGAA-AAAACAG
* * *
45553286 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45553350 GAAAAGCATAAATTG-AAAAACGG
66 GAAAAGCATAAATTGAAAAAACAG
*
45553373 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
45553438 TTGAAAAGCATGAATTGAAAA
64 TTGAAAAGCATAAATTGAAAA
45553459 TACCTCAACG
Statistics
Matches: 158, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
87 61 0.39
88 1 0.01
89 19 0.12
90 74 0.47
91 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCATAAATTGAAAAAACAG
Found at i:45553494 original size:76 final size:76
Alignment explanation
Indices: 45553362--45553584 Score: 269
Period size: 76 Copynumber: 3.0 Consensus size: 76
45553352 AAAGCATAAA
* * * *
45553362 TTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
45553427 GTTGATTTTTT
66 GTTGATTTTTT
* * * * **
45553438 TTGA-AAAGCATG-AATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATAT
1 TTGACAAA-CA-GAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
*
45553501 GAGTTGA---GTT
64 GAGTTGATTTTTT
*
45553511 TTGACAAACAGAAATT-AAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAATTGAAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
45553575 AGTTGATTTT
65 AGTTGATTTT
45553585 GAAAAAGTAG
Statistics
Matches: 121, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
72 5 0.04
73 54 0.45
74 3 0.02
75 3 0.02
76 55 0.45
77 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (76 bp):
TTGACAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:45553560 original size:73 final size:73
Alignment explanation
Indices: 45553362--45553603 Score: 271
Period size: 73 Copynumber: 3.3 Consensus size: 73
45553352 AAAGCATAAA
* * *
45553362 TTGAAAAA-CGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATG
1 TTGAAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
45553426 AGTTGATTTTTT
66 AGTTGA----TT
* * * * **
45553438 TTG-AAAAGCATG-AATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATAT
1 TTGAAAAAGCA-GAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
45553501 GAGTTGAGTT
65 GAGTTGA-TT
* *
45553511 TTGACAAA-CAGAAATT-AAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAAGCAGAAATTGAAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
45553574 GAGTTGATT
65 GAGTTGATT
*
45553583 TTGAAAAAGTAGAAATT-AAAA
1 TTGAAAAAGCAGAAATTGAAAA
45553604 GGTTCAACCC
Statistics
Matches: 140, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
72 14 0.10
73 64 0.46
74 3 0.02
75 4 0.03
76 54 0.39
77 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:45553726 original size:127 final size:127
Alignment explanation
Indices: 45553490--45553835 Score: 443
Period size: 127 Copynumber: 2.7 Consensus size: 127
45553480 TCGACTCATT
* * *
45553490 TCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTC
1 TCTCGCAATATGAGTTGA-TTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTC
* *
45553555 AACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACC
65 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGCAAAAATTAAAAGGCTT-AACCCACC
* * *
45553617 TCTCGTAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGATT-TTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTC
* ** *
45553682 AACTCACTTCTCGGGATATGAGTTGATTTTTGAAAAA-CAAAAATTAAAAGGCTTAACTCACC
65 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGCAAAAATTAAAAGGCTTAACCCACC
* * * * * * * *
45553744 TCTCGCAATATGAG-TCAATTT-A-GAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCA
1 TCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTCA
45553806 ACTCACCTCTCGCAATATGAGTTGATTTTT
66 ACTCACCTCTCGCAATATGAGTTGATTTTT
45553836 TCGACAAACA
Statistics
Matches: 190, Mismatches: 26, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
123 59 0.31
124 1 0.01
125 2 0.01
126 5 0.03
127 111 0.58
128 12 0.06
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (127 bp):
TCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGCAAAAATTAAAAGGCTTAACCCACC
Found at i:45553882 original size:75 final size:73
Alignment explanation
Indices: 45553730--45554004 Score: 360
Period size: 75 Copynumber: 3.7 Consensus size: 73
45553720 AAAAATTAAA
* * * * * *
45553730 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTT-AGAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
*
45553791 GTGCCCCG
66 GTGCCCTG
* *
45553799 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCGACAAACATAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-GA-AAACATAAATTGAAAATACCTCA
*
45553864 GCGTGTCCTG
64 GCGTGCCCTG
*
45553874 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAAAAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAA-C-ATAAATTGAAAATACCTC
45553939 AGCGTGCCCTG
63 AGCGTGCCCTG
*
45553950 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTGAA
45554005 GAAAACAGAA
Statistics
Matches: 180, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
69 26 0.14
70 2 0.01
72 3 0.02
74 13 0.07
75 69 0.38
76 67 0.37
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
GTGCCCTG
Found at i:45554011 original size:16 final size:16
Alignment explanation
Indices: 45553990--45554020 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45553980 GATTTTTTGA
*
45553990 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
45554006 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
45554021 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:45554076 original size:90 final size:89
Alignment explanation
Indices: 45553923--45554185 Score: 413
Period size: 90 Copynumber: 2.9 Consensus size: 89
45553913 GAAAAGCAAA
*
45553923 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45553988 GAAAAACATAAATTGAAGAAAACAG
66 GAAAAGCATAAATTGAA-AAAACAG
* * *
45554013 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45554077 GAAAAGCATAAATTG-AAAAACGG
66 GAAAAGCATAAATTGAAAAAACAG
*
45554100 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
45554165 TTGAAAAGCATGAATTGAAAA
64 TTGAAAAGCATAAATTGAAAA
45554186 TACCTCAACG
Statistics
Matches: 158, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
87 61 0.39
88 1 0.01
89 19 0.12
90 74 0.47
91 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCATAAATTGAAAAAACAG
Found at i:45554221 original size:76 final size:76
Alignment explanation
Indices: 45554089--45554311 Score: 269
Period size: 76 Copynumber: 3.0 Consensus size: 76
45554079 AAAGCATAAA
* * * *
45554089 TTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
45554154 GTTGATTTTTT
66 GTTGATTTTTT
* * * * **
45554165 TTGA-AAAGCATG-AATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATAT
1 TTGACAAA-CA-GAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
*
45554228 GAGTTGA---GTT
64 GAGTTGATTTTTT
*
45554238 TTGACAAACAGAAATT-AAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAATTGAAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
45554302 AGTTGATTTT
65 AGTTGATTTT
45554312 GAAAAAGTAG
Statistics
Matches: 121, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
72 5 0.04
73 54 0.45
74 3 0.02
75 3 0.02
76 55 0.45
77 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (76 bp):
TTGACAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:45554287 original size:73 final size:73
Alignment explanation
Indices: 45554089--45554330 Score: 271
Period size: 73 Copynumber: 3.3 Consensus size: 73
45554079 AAAGCATAAA
* * *
45554089 TTGAAAAA-CGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATG
1 TTGAAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
45554153 AGTTGATTTTTT
66 AGTTGA----TT
* * * * **
45554165 TTG-AAAAGCATG-AATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATAT
1 TTGAAAAAGCA-GAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
45554228 GAGTTGAGTT
65 GAGTTGA-TT
* *
45554238 TTGACAAA-CAGAAATT-AAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAAGCAGAAATTGAAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
45554301 GAGTTGATT
65 GAGTTGATT
*
45554310 TTGAAAAAGTAGAAATT-AAAA
1 TTGAAAAAGCAGAAATTGAAAA
45554331 GGTTCAACCC
Statistics
Matches: 140, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
72 14 0.10
73 64 0.46
74 3 0.02
75 4 0.03
76 54 0.39
77 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:45554453 original size:127 final size:127
Alignment explanation
Indices: 45554217--45554562 Score: 461
Period size: 127 Copynumber: 2.7 Consensus size: 127
45554207 TCGACTCATT
* * *
45554217 TCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTC
1 TCTCGCAATATGAGTTGA-TTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTC
* *
45554282 AACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACC
65 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGCAAAAATTAAAAGGCTT-AACCCACC
* *
45554344 TCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGATT-TTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTC
* ** *
45554409 AACTCACTTCTCGGGATATGAGTTGATTTTTGAAAAA-CAAAAATTAAAAGGCTTAACTCACC
65 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGCAAAAATTAAAAGGCTTAACCCACC
* * * * * * *
45554471 TCTCGCAATATGAG-TCAATTT-A-AAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGTTCA
1 TCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTCA
45554533 ACTCACCTCTCGCAATATGAGTTGATTTTT
66 ACTCACCTCTCGCAATATGAGTTGATTTTT
45554563 TCGACAAACA
Statistics
Matches: 193, Mismatches: 23, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
123 60 0.31
124 1 0.01
125 2 0.01
126 5 0.03
127 113 0.59
128 12 0.06
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (127 bp):
TCTCGCAATATGAGTTGATTTTGACAAACAAAAATTAAAATTACCTCAGCGTGCCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGCAAAAATTAAAAGGCTTAACCCACC
Found at i:45554609 original size:75 final size:73
Alignment explanation
Indices: 45554457--45554730 Score: 376
Period size: 75 Copynumber: 3.7 Consensus size: 73
45554447 AAAAATTAAA
* * * * *
45554457 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTT-AAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
*
45554518 GTGCCCCG
66 GTGCCCTG
* *
45554526 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCGACAAACATAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-GA-AAACATAAATTGAAAATACCTCA
*
45554591 GCGTGTCCTG
64 GCGTGCCCTG
*
45554601 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAAAAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-C-ATAAATTGAAAATACCTCA
45554666 GCGTGCCCTG
64 GCGTGCCCTG
*
45554676 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTGAA
45554731 GAAAACAGAA
Statistics
Matches: 181, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
69 26 0.14
70 2 0.01
72 3 0.02
73 3 0.02
74 13 0.07
75 130 0.72
76 4 0.02
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
GTGCCCTG
Found at i:45554737 original size:16 final size:16
Alignment explanation
Indices: 45554716--45554746 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45554706 GATTTTTTGA
*
45554716 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
45554732 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
45554747 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:45554802 original size:90 final size:89
Alignment explanation
Indices: 45554649--45554911 Score: 422
Period size: 90 Copynumber: 2.9 Consensus size: 89
45554639 GAAAAGCAAA
*
45554649 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45554714 GAAAAACATAAATTGAAGAAAACAG
66 GAAAAGCATAAATTGAA-AAAACAG
* * *
45554739 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
45554803 GAAAAGCATAAATTG-AAAAACAG
66 GAAAAGCATAAATTGAAAAAACAG
*
45554826 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
45554891 TTGAAAAGCATGAATTGAAAA
64 TTGAAAAGCATAAATTGAAAA
45554912 TACCTCAACG
Statistics
Matches: 159, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
87 62 0.39
88 1 0.01
89 19 0.12
90 74 0.47
91 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCATAAATTGAAAAAACAG
Found at i:45554820 original size:14 final size:14
Alignment explanation
Indices: 45554801--45554835 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
45554791 GAGTTGATTT
* *
45554801 TTGAAAAGCATAAA
1 TTGAAAAACAGAAA
45554815 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
45554829 TTGAAAA
1 TTGAAAA
45554836 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.14, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:45555013 original size:73 final size:72
Alignment explanation
Indices: 45554815--45555129 Score: 362
Period size: 73 Copynumber: 4.3 Consensus size: 72
45554805 AAAGCATAAA
* *
45554815 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATT-AAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
45554880 GTTGATTTTTT
65 GTTGA---TTT
* * * * * **
45554891 TTGAAAAGCATG-AATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATG
1 TTGAAAAACA-GAAATT-AAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
*
45554955 AGTTGAGTT
64 AGTTGATTT
* *
45554964 TTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
45555029 GTTGATTC
65 GTTGATTT
* * * * * * *
45555037 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCGATATGA
1 TTGAAAAACAGAAATT-AAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
45555102 GTTGATTT
65 GTTGATTT
*
45555110 TTGAAAAACAAAAATTAAAA
1 TTGAAAAACAGAAATTAAAA
45555130 GGCTTAACTC
Statistics
Matches: 204, Mismatches: 31, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
72 8 0.04
73 133 0.65
74 3 0.01
76 59 0.29
77 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (72 bp):
TTGAAAAACAGAAATTAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:45555119 original size:146 final size:146
Alignment explanation
Indices: 45554815--45555129 Score: 427
Period size: 146 Copynumber: 2.1 Consensus size: 146
45554805 AAAGCATAAA
* * *
45554815 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATT-AAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * *
45554880 GTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCTCGACTCATTTC
65 GTTGA--TTTCTTGAAAAGCAAAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACTTC
45554945 TCGCAATATGAGTTGAGTT
128 TCGCAATATGAGTTGAGTT
*
45554964 TTGACAAACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAA-TACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
45555029 GTTGA-TTCTTGACAAA-CAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCT
65 GTTGATTTCTTGA-AAAGCAAAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACTTCT
* *
45555092 CGCGATATGAGTTGATTT
129 CGCAATATGAGTTGAGTT
*
45555110 TTGAAAAACAAAAATTAAAA
1 TTGAAAAACAGAAATTAAAA
45555130 GGCTTAACTC
Statistics
Matches: 147, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
146 79 0.54
147 3 0.02
148 4 0.03
149 61 0.41
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (146 bp):
TTGAAAAACAGAAATTAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTCTTGAAAAGCAAAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACTTCTCG
CAATATGAGTTGAGTT
Found at i:45555141 original size:726 final size:722
Alignment explanation
Indices: 45551837--45555581 Score: 3827
Period size: 727 Copynumber: 5.1 Consensus size: 722
45551827 TTTGAAAAAT
* *
45551837 AAATTGAAAATATCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * *
45551901 ACGAA-CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCA
66 A-AAAGCATAAATTGAAAAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCA
* * * * * *
45551964 CTTCTCGCAATATGAGTTGA---ATTTTGAAAA-CA-GAAATTTAAATTACCTCAACGTGTCTTG
127 CCTCTCGTAATATGAGTTGATTTTTTTTGAAAAGCATG-AATTGAAAATACCTCAACGTGTCTTA
* ** * * * * * *
45552024 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAATTACCTCAGC
191 AGGCTCGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAAC
* * *
45552089 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACATAAATTGAAAT
256 ATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGACAAACAAAAATTGAAAT
* *
45552154 TACCTCAGCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAGTAGA
319 TACCTCA-C-TG-C-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CAAA
* * *
45552218 AATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAAATT
379 AATTAAAAGGCTTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT--AA--
* * ** ***
45552282 ACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTGA-A-AAAC-AA
440 A----A--GTG-CCT-----TCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAA
* ** * * *
45552344 AAAT---TAAAAG-G--C----TT-AACTCACCTCTCGCAATATGAG-TCA--ATTT-AGAACAT
493 AAATACCTCAGCGTGCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAT
* * * *
45552394 AAACTAAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
558 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
45552459 CGACAAA-C-ATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
623 -GA-AAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
45552522 AGTTGATTTTTT--------TGAA---AAG-CAA-A-
686 AGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAG
* *
45552545 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * * *
45552610 GAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCAC
65 GAAAAGCATAAATTG-A-AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCAC
* * *
45552675 CTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAC-GGAAATTGAAAATACCTCA
128 CTCTCGTAATATGAGTTGATTTTT--------T---TTGAAAAGCATG-AATTGAAAATACCTCA
* * * * * ** * *
45552739 GCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTTGA-AAAGCATG-AAT
181 ACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATGAGTTGA---GTTTTGACAAA-CA-GAAAT
* * * * * **
45552802 TGAAAA-TACCTCAACGTGTCTTAAGGCTCGACTCATTTCTCGCAATATGAGTTGAGTTTTGACA
241 T-AAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACA
* *
45552866 AACAGAAATTAAAATTACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
304 AACAAAAATTGAAATTACCTC-AC-TG--CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * * * *
45552930 TTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGTAATATGAGTTGATTCTTGACAA
365 TTTTGAAAAA-CAAAAATTAAAAGGCTTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
* * **
45552994 ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG-GATATGAGTTGATT
429 ACAAAAATT--AA--A----A--GTG-CCT-----TCAACTCACCTCTCGCAATATGAGTCAATT
*** * ** *
45553058 TTTGA-A-AAAC-AAAAAT---TAAAAG-G--C----TT-AACTCACCTCTCGCAATATGAG-TC
478 TAAAACATAAACTAAAAATACCTCAGCGTGCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTG
* * * * * * *
45553108 A--ATTT-AGAACATAAACTAAAAATACCTTAGCGTGCCCCGAGGTTCAACTCACCTCTCGCAAT
543 ATTTTTTGAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAT
45553170 ATGAGTTGATTTTTTTGAAAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
608 ATGAGTTGA-TTTTTTGAAAAGCAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
45553235 CCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAG
672 CCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAG
* *
45553286 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
45553351 AAAAGCATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
66 AAAAGCATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
45553416 TCGTAATATGAGTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCT
131 TCGTAATATGAGTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCT
45553481 CGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCC
196 CGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCC
* *
45553546 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG----A-AAAAGTAGAAATTA----A
261 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAAATTGAAATTACCTCA
* * * * * *
45553602 -----AAGGTTCAACCCACCTCTCGTAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTAC
326 CTGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT--AA--A-
* **
45553662 CTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGGGATATGAGTTGATTTTTGAAAAACAAAAATT
386 ---A--G-G--CT-----TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT
*
45553727 AAAAG-G-CTT-AACTCACCTCTCGCAATATGAGTCAATTTAGAACATAAACTAAAAATACCTCA
438 AAAAGTGCCTTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCA
45553789 GCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCGACAAACATAAATTGA
503 GCGTG-CCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-GA-AAACATAAATTGA
* *
45553854 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
565 AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAG
45553919 CAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
629 CAAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
45553984 TTTTGAAAAACATAAATTGAAGAAAACAG
694 TTTTGAAAAACATAAATTGAAGAAAACAG
* *
45554013 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
45554078 AAAAGCATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
66 AAAAGCATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
45554143 TCGTAATATGAGTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCT
131 TCGTAATATGAGTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCT
45554208 CGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCC
196 CGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCC
* *
45554273 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG----A-AAAAGTAGAAATTA----A
261 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAAATTGAAATTACCTCA
* * * * *
45554329 -----AAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTAC
326 CTGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT--AA--A-
* **
45554389 CTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGGGATATGAGTTGATTTTTGAAAAACAAAAATT
386 ---A--G-G--CT-----TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT
45554454 AAAAG-G-CTT-AACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCA
438 AAAAGTGCCTTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCA
45554516 GCGTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCGACAAACATAAATTGA
503 GCGTG-CCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-GA-AAACATAAATTGA
* *
45554581 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGC
565 AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGC
45554646 AAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
630 AAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
45554711 TTTGAAAAACATAAATTGAAGAAAACAG
695 TTTGAAAAACATAAATTGAAGAAAACAG
* *
45554739 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
45554804 AAAAGCATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
66 AAAAGCATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
45554869 TCGTAATATGAGTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCT
131 TCGTAATATGAGTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCT
45554934 CGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCC
196 CGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCC
45554999 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTACCTC
261 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGACAAACAAAAATTGAAATTACCTC
* *
45555064 AGCGTGTCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAAAACAAAAATTAAA
325 A-C-TG--CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
* * * * **
45555129 AGGCTT-AACTCACCTCTCGCAATATGAG-TCAATTTAGAACATAAACTAAAAATACCTCAGCGT
386 AGGCTTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-A-A-AAAC-AAAAAT---TAAAAGT
* * * * *
45555192 GCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTCGACAAACATAAATTGAAATTA
444 G--CC----TTCAACTCACCTCTCGCAATATGAG-TCA-ATTT--A-AAACATAAACTAAAAATA
* * *
45555257 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAAAAA
498 CCTCAGCGTG-CCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-C-ATAA
*
45555322 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGA
560 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-
* * * *
45555387 AAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
624 --------AA---AAG-CAA-A-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
* * *
45555452 CTCGCAATATGAGTTGA-TTTTTGAAAAGCATAAATTG-A-AAAACGG
675 CTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAAGAAAACAG
* *
45555497 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
45555562 TGAAAAGCATGAATTGAAAA
64 TGAAAAGCATAAATTGAAAA
45555582 TACCTCAACG
Statistics
Matches: 2737, Mismatches: 148, Indels: 252
0.87 0.05 0.08
Matches are distributed among these distances:
705 47 0.02
706 22 0.01
707 3 0.00
708 61 0.02
709 11 0.00
710 48 0.02
711 3 0.00
712 28 0.01
713 5 0.00
714 1 0.00
715 1 0.00
716 3 0.00
718 10 0.00
719 2 0.00
720 3 0.00
721 23 0.01
722 4 0.00
723 10 0.00
724 105 0.04
725 67 0.02
726 560 0.20
727 1094 0.40
728 62 0.02
729 9 0.00
730 1 0.00
731 1 0.00
732 17 0.01
733 1 0.00
734 1 0.00
735 4 0.00
736 2 0.00
737 1 0.00
738 69 0.03
739 3 0.00
740 22 0.01
741 78 0.03
742 2 0.00
743 5 0.00
744 3 0.00
745 49 0.02
746 129 0.05
755 2 0.00
758 64 0.02
759 3 0.00
760 43 0.02
761 55 0.02
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (722 bp):
AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAGCATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
TCGTAATATGAGTTGATTTTTTTTGAAAAGCATGAATTGAAAATACCTCAACGTGTCTTAAGGCT
CGACTCATTTCTCGCAATATGAGTTGAGTTTTGACAAACAGAAATTAAAATTACCTCAACATGCC
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAAATTGAAATTACCTCA
CTGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCT
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGTGCCTTCAACTCA
CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGCCCGAGGTTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGCGTGCCCTGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAAAAAATTGAAAATACCTCAG
CGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAAG
AAAACAG
Found at i:45555225 original size:123 final size:128
Alignment explanation
Indices: 45555002--45555249 Score: 326
Period size: 123 Copynumber: 2.0 Consensus size: 128
45554992 ACATGCCCTG
* * * * *
45555002 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATCTTGACAAACAAAAACTAAAAATACCTCAGC
* * * *
45555067 GTGTCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTT-GAAAAACAAAAATTAAA
66 GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCGAAAAACAAAAATTAAA
* * *
45555129 AGGCTTAACTCACCTCTCGCAATATGAG-TCAAT-TT-A-GAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATCTTGACAAACAAAAACTAAAAATACCTCAGC
* * *
45555190 GTGCCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTCGACAAACATAAATT
66 GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCGAAAAACAAAAATT
45555250 GAAATTACCT
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
123 60 0.57
124 13 0.12
125 2 0.02
126 3 0.03
127 27 0.26
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (128 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAATCTTGACAAACAAAAACTAAAAATACCTCAGC
GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCGAAAAACAAAAATTAAA
Found at i:45555280 original size:74 final size:73
Alignment explanation
Indices: 45555129--45555401 Score: 365
Period size: 74 Copynumber: 3.7 Consensus size: 73
45555119 AAAAATTAAA
* * * * * *
45555129 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTT-AGAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
*
45555190 GTGCCCCG
66 GTGCCCTG
* * *
45555198 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTCGACAAACATAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACATAAATTGAAAATACCTCAG
*
45555263 CGTGTCCTG
65 CGTGCCCTG
*
45555272 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAAAAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAA-C-ATAAATTGAAAATACCTCA
45555337 GCGTGCCCTG
64 GCGTGCCCTG
*
45555347 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAAACATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTGAA
45555402 GAAAACAGAA
Statistics
Matches: 178, Mismatches: 18, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
69 26 0.15
70 2 0.01
72 2 0.01
73 4 0.02
74 75 0.42
75 65 0.37
76 4 0.02
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAATACCTCAGC
GTGCCCTG
Found at i:45555408 original size:16 final size:16
Alignment explanation
Indices: 45555387--45555417 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45555377 GATTTTTTGA
*
45555387 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
45555403 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
45555418 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:45555473 original size:90 final size:89
Alignment explanation
Indices: 45555320--45555581 Score: 420
Period size: 87 Copynumber: 2.9 Consensus size: 89
45555310 GAAAAGCAAA
*
45555320 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45555385 GAAAAACATAAATTGAAGAAAACAG
66 GAAAAGCATAAATTGAA-AAAACAG
* * *
45555410 AAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
45555474 GAAAAGCATAAATTG-AAAAACGG
66 GAAAAGCATAAATTGAAAAAACAG
*
45555497 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
45555562 TGAAAAGCATGAATTGAAAA
65 TGAAAAGCATAAATTGAAAA
45555582 TACCTCAACG
Statistics
Matches: 158, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
87 61 0.39
88 1 0.01
89 38 0.24
90 58 0.37
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCATAAATTGAAAAAACAG
Found at i:45555676 original size:73 final size:72
Alignment explanation
Indices: 45555490--45555720 Score: 293
Period size: 73 Copynumber: 3.2 Consensus size: 72
45555480 CATAAATTGA
* * *
45555490 AAAACGGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCAACTCTCGTAATATGAGTTG
45555555 ATTTTTTTG
66 A--TTTTTG
* * * ** *
45555564 AAAAGCATG-AATTGAAAATACCTCAACGTGTCTTGAGGCTCGACTCATTTCTCGCAATATGAGT
1 AAAA-CA-GAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCAACTCTCGTAATATGAGT
*
45555628 TGAGTTTTG
64 TGATTTTTG
* * *
45555637 ACAAACAGAAATTGAAATTACCTCAACATGCCCTGAGGCTCAACTCAACTCTCGTAATATGAATT
1 A-AAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCAACTCTCGTAATATGAGTT
45555702 GATTTTTG
65 GATTTTTG
45555710 AAAACAGAAAT
1 AAAACAGAAAT
45555721 AAAACATCAA
Statistics
Matches: 134, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
72 11 0.08
73 63 0.47
74 7 0.05
75 52 0.39
76 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (72 bp):
AAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCAACTCTCGTAATATGAGTTG
ATTTTTG
Done.