Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 158 of 770
Found at i:46490970 original size:47 final size:47
Alignment explanation
Indices: 46490916--46491101 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 47
46490906 TTAGGATTTT
** * *
46490916 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46490963 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
46491010 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
46491057 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
46491102 TATTGTGAAA
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 127 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:46491016 original size:22 final size:22
Alignment explanation
Indices: 46490945--46491016 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
46490935 GTATATATGA
46490945 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
46490967 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
46490992 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
46491014 GAT
1 GAT
46491017 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:46491065 original size:25 final size:25
Alignment explanation
Indices: 46490990--46491065 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
46490980 ATGCATATAT
46490990 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
46491015 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
46491037 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
46491062 GTGA
1 GTGA
46491066 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:46491136 original size:48 final size:48
Alignment explanation
Indices: 46491079--46491228 Score: 239
Period size: 48 Copynumber: 3.1 Consensus size: 48
46491069 TGAACATGCA
*
46491079 TATATGTGGTAAAGCCGAATGGCTATTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
46491127 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
46491175 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
46491225 TATA
1 TATA
46491229 GAATAGACTA
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.01
48 74 0.78
49 2 0.02
50 18 0.19
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:46494057 original size:25 final size:28
Alignment explanation
Indices: 46494005--46494058 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
46493995 TTATAGCTAT
* *
46494005 TATGTGTTGAATGATCGATTTTGTATAA
1 TATGTGTTGAATGATCGATTATGAATAA
46494033 TATG-GTTGAAT-AT-GATTATGAATAA
1 TATGTGTTGAATGATCGATTATGAATAA
46494058 T
1 T
46494059 GCATGATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 11 0.46
26 2 0.08
27 7 0.29
28 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.44
Consensus pattern (28 bp):
TATGTGTTGAATGATCGATTATGAATAA
Found at i:46494217 original size:48 final size:48
Alignment explanation
Indices: 46494144--46494368 Score: 229
Period size: 48 Copynumber: 4.7 Consensus size: 48
46494134 TGATATGTGT
*
46494144 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * * **
46494192 GCTAGTGCAAGACCATGTCTAGGACATGGTATCAACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * * * **
46494240 GCCAGTGTAATACCATGTCTGGGACATGGCATC-GTCATTAAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATGAGA
* * * * *
46494288 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGA-CATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGA
* * * *
46494336 GCCAGTGTAAGACCATGTTTAGAACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
46494369 AGCAATTCAC
Statistics
Matches: 146, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
47 2 0.01
48 141 0.97
49 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:46501453 original size:39 final size:39
Alignment explanation
Indices: 46501370--46501466 Score: 92
Period size: 39 Copynumber: 2.5 Consensus size: 39
46501360 TGAAACCAAT
* *
46501370 TACCAGCA-CAAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCATGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * *
46501408 TACCAGC-TCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCAT-GAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
46501447 TTCCAGCATGTAGCCTGCGG
1 TACCAGCATGAAGCCTGCGG
46501467 ACCTTAAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
38 13 0.27
39 34 0.71
40 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (39 bp):
TACCAGCATGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:46501480 original size:39 final size:39
Alignment explanation
Indices: 46501437--46501562 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
46501427 GGACTTTAGC
* * ** *
46501437 CCGGACATATTTCCAGCATGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
46501476 CCGGATATAATTCCAACACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
46501515 TCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
46501554 CCGAATATA
1 CCGGATATA
46501563 CATCACTAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:46507509 original size:25 final size:25
Alignment explanation
Indices: 46507480--46507557 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
46507470 GAATGGCCAA
46507480 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
46507505 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
46507527 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
46507552 TGTGAT
1 TGTGAT
46507558 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:46507532 original size:22 final size:22
Alignment explanation
Indices: 46507505--46507579 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
46507495 CATGCATATG
46507505 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
46507527 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
46507550 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
46507574 TGTGAT
1 TGTGAT
46507580 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:46507710 original size:141 final size:141
Alignment explanation
Indices: 46507386--46507716 Score: 495
Period size: 141 Copynumber: 2.4 Consensus size: 141
46507376 TTAGGATTTT
* *
46507386 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGG-AAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
* *
46507450 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
66 TGCATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGTGATAAGG
*
46507515 CCGAATGGCCA
131 CAGAATGGCCA
* * * *
46507526 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
*
46507591 TGCATATATGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGTGATAAGG
66 TGCATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGTGATAAGG
46507656 CAGAATGGCCA
131 CAGAATGGCCA
* * * * * *
46507667 ATGTGATGAACGTGGAA-GTGTTTATATGTGGTAAAGCCAAATGGCTAATG
1 ATGTGATGAATGT-GAACGTGTATATATGTGATAAGGCCGAATGGCAAATG
46507717 CGAAATGTGT
Statistics
Matches: 170, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
140 39 0.23
141 128 0.75
142 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
TGCATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCATATATGTGATAAGG
CAGAATGGCCA
Found at i:46507711 original size:47 final size:47
Alignment explanation
Indices: 46507386--46507676 Score: 485
Period size: 47 Copynumber: 6.2 Consensus size: 47
46507376 TTAGGATTTT
** * * *
46507386 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGG-AA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
46507432 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
46507479 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
46507526 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46507573 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
46507620 ATATGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
46507667 ATGTGATGAA
1 ATGTGATGAA
46507677 CGTGGAAGTG
Statistics
Matches: 234, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
46 41 0.18
47 193 0.82
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:46507748 original size:46 final size:46
Alignment explanation
Indices: 46507696--46507826 Score: 199
Period size: 46 Copynumber: 2.8 Consensus size: 46
46507686 GTTTATATGT
46507696 GGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGGACATGA
1 GGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGGACATGA
* * * *
46507742 GGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGT
1 GGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGGACATGA
* * *
46507788 GGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 GGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATG
46507827 TGTATATATA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.24
Consensus pattern (46 bp):
GGTAAAGCCAAATGGCTAATGCGAAATGTGTATGAGATGGACATGA
Found at i:46509368 original size:40 final size:40
Alignment explanation
Indices: 46509310--46509643 Score: 535
Period size: 40 Copynumber: 8.4 Consensus size: 40
46509300 TGAGAGTTAT
*
46509310 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
46509350 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
46509390 ATATATCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
46509429 ATGTATCCGGGCTAAGTCGCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
46509469 ATATATTCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
46509509 ATGTATTCGGGCTAAGTCGCGAAGAGCATTTGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
46509549 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
46509589 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
46509629 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
46509644 ACCTCGAAGG
Statistics
Matches: 271, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 37 0.14
40 234 0.86
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:46509738 original size:29 final size:28
Alignment explanation
Indices: 46509703--46509804 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
46509693 CTCCAACCGA
* *
46509703 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
46509732 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
46509760 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
46509789 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
46509805 TTCTTTAATC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 22 0.36
29 39 0.64
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:46509761 original size:57 final size:57
Alignment explanation
Indices: 46509671--46509859 Score: 229
Period size: 57 Copynumber: 3.3 Consensus size: 57
46509661 GCTGGAATTA
* * * * *
46509671 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
46509728 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* ** *
46509785 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGTGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
46509842 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
46509860 AGTGTGTTTC
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
56 14 0.12
57 99 0.87
58 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:46509813 original size:29 final size:29
Alignment explanation
Indices: 46509672--46509831 Score: 134
Period size: 28 Copynumber: 5.6 Consensus size: 29
46509662 CTGGAATTAT
* * ** *
46509672 GAGGCACTGTGTGTGCAAGTTCTCCAACC
1 GAGGCACTATGTGTGCGAGTTCTGTAATC
* * * * *
46509701 GA-GCACTATGTGTGCCAGATCAGTAGTT
1 GAGGCACTATGTGTGCGAGTTCTGTAATC
46509729 GAGGCACTATGTGTGCGAGTTCT-TCAATC
1 GAGGCACTATGTGTGCGAGTTCTGT-AATC
* *
46509758 GA-GCACTATGTGTGCGAGATT-GGTAATT
1 GAGGCACTATGTGTGCGAG-TTCTGTAATC
*
46509786 GAGGCACTATGTGTGCGAGTTCTTTAATC
1 GAGGCACTATGTGTGCGAGTTCTGTAATC
46509815 GAGTG--CTATGTGTGCGA
1 GAG-GCACTATGTGTGCGA
46509832 AATCAGTCAG
Statistics
Matches: 105, Mismatches: 19, Indels: 15
0.76 0.14 0.11
Matches are distributed among these distances:
28 55 0.52
29 49 0.47
30 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGTTCTGTAATC
Found at i:46512451 original size:40 final size:40
Alignment explanation
Indices: 46512306--46512469 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 40
46512296 CGGGATTCAA
* * * *
46512306 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
46512346 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** *
46512386 CCGGATATAA-CAACCCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
46512426 CCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46512466 CCGG
1 CCGG
46512470 GTATCATTCA
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
40 99 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46512453 original size:80 final size:80
Alignment explanation
Indices: 46512306--46512469 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
46512296 CGGGATTCAA
* * ** * *
46512306 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
46512371 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
46512386 CCGGATATAACAACCCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
46512450 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
46512466 CCGG
1 CCGG
46512470 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:46517023 original size:47 final size:47
Alignment explanation
Indices: 46516969--46517169 Score: 330
Period size: 47 Copynumber: 4.3 Consensus size: 47
46516959 TTAGGATTTT
** * * *
46516969 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
46517016 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
*
46517063 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
* *
46517110 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
46517157 ATGTGATGAATGT
1 ATGTGATGAATGT
46517170 TCATGTGATG
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGAGATAAGGCCGAATGGCCA
Found at i:46517143 original size:141 final size:141
Alignment explanation
Indices: 46516969--46517733 Score: 909
Period size: 141 Copynumber: 5.4 Consensus size: 141
46516959 TTAGGATTTT
** * * *
46516969 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
46517034 TGCATATGTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
46517099 CCGAATGGCCA
131 CCGAATGGCCA
* *
46517110 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTTCATG
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC----------A-----ATG
46517175 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACATGA
51 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC---------AATGTG---ATGA
* * *
46517240 ATGTGAACATGCATATATGTGATAAGGTCGGATGGCCA
104 ATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
46517278 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
46517343 TGCATA--TGTG-TAA---TG--T-G---ATG-AATG--T--GAACATGCATATGTGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
46517391 CCGAATGGCCA
131 CCGAATGGCCA
*
46517402 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
46517467 TGCGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
46517532 CCGAATGGCCA
131 CCGAATGGCCA
*
46517543 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
46517608 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
*
46517673 CAGAATGGCCA
131 CCGAATGGCCA
* * * * * *
46517684 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTAATG
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
46517734 CGAAATGTGT
Statistics
Matches: 545, Mismatches: 34, Indels: 90
0.81 0.05 0.13
Matches are distributed among these distances:
124 99 0.18
126 5 0.01
127 3 0.01
128 3 0.01
130 1 0.00
132 4 0.01
133 1 0.00
136 3 0.01
137 3 0.01
139 1 0.00
141 248 0.46
142 3 0.01
144 1 0.00
145 1 0.00
147 1 0.00
150 3 0.01
151 5 0.01
153 24 0.04
156 45 0.08
158 1 0.00
165 6 0.01
168 84 0.15
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
CCGAATGGCCA
Found at i:46517163 original size:22 final size:22
Alignment explanation
Indices: 46517089--46517163 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
46517079 CATGCATATG
*
46517089 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
*
46517111 TGTGATGAATGT-GAACAT-G-CATA
1 TGTGAT-AAGGTCG-A-ATGGCCA-A
46517134 TGTGTGATAAGGTCGAATGGCCAA
1 --TGTGATAAGGTCGAATGGCCAA
46517158 TGTGAT
1 TGTGAT
46517164 GAATGTTCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 18
0.66 0.05 0.29
Matches are distributed among these distances:
22 15 0.37
23 8 0.20
24 9 0.22
25 9 0.22
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGCCAA
Found at i:46517184 original size:62 final size:62
Alignment explanation
Indices: 46517110--46517290 Score: 278
Period size: 62 Copynumber: 3.0 Consensus size: 62
46517100 CGAATGGCCA
46517110 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTTC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTTC
* * *
46517172 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATAAATG-TG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTTC
** * *
46517233 A--ACATGAATGTGAACATGCATATATGTGATAAGGTCGGATGGCCAATGTGATGAATGT
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGT
46517291 GAACATGCAT
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
59 50 0.46
61 2 0.02
62 57 0.52
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (62 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTTC
Found at i:46517231 original size:47 final size:47
Alignment explanation
Indices: 46517172--46517353 Score: 229
Period size: 47 Copynumber: 3.6 Consensus size: 47
46517162 ATGAATGTTC
46517172 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATAA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC---------A
* * *
46517228 ATGTGAACATGAATGTGAACATGCATATATGTGATAAGGTCGGATGGCCA
1 ATGTG---ATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
46517278 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
46517325 ATGTGATGAATGTGAACATGCATATGTGT
1 ATGTGATGAATGTGAACATGCATATGTGT
46517354 AATGTGATGA
Statistics
Matches: 117, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
47 68 0.58
50 6 0.05
56 5 0.04
59 38 0.32
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:46517275 original size:59 final size:59
Alignment explanation
Indices: 46517115--46517421 Score: 283
Period size: 59 Copynumber: 5.1 Consensus size: 59
46517105 GGCCAATGTG
* **
46517115 ATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTTCATGTG
1 ATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATG-TGA--AC
* *
46517177 ATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAC
1 ATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAC
* *
46517236 ATGAATGTGAACATGCATATATGTGATAAGGTCGGATGGCCAATGTGATGAATGTGAAC
1 ATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAC
* *
46517295 ATGCATATGTGTGATA-AGGCCGA-ATGGCCAATGTGATGAATGT-GAACAT-G-CATATGTG-T
1 ATG-A-A--TGTGA-ACATG-C-ATAT-G----TGTGAT-AAGGTCG-A-ATGGCCA-ATGTGAT
46517354 -AATGTG---
50 GAATGTGAAC
*
46517360 ATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 ATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAC
46517419 ATG
1 ATG
46517422 CATATATGAG
Statistics
Matches: 203, Mismatches: 16, Indels: 55
0.74 0.06 0.20
Matches are distributed among these distances:
53 2 0.01
54 10 0.05
55 10 0.05
56 6 0.03
59 63 0.31
60 5 0.02
61 10 0.05
62 52 0.26
63 8 0.04
64 5 0.02
65 4 0.02
68 6 0.03
69 10 0.05
70 10 0.05
71 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (59 bp):
ATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAC
Found at i:46517358 original size:30 final size:30
Alignment explanation
Indices: 46517324--46517383 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
46517314 CCGAATGGCC
46517324 AATGTGATGAATGTGAACATGCATATGTGT
1 AATGTGATGAATGTGAACATGCATATGTGT
46517354 AATGTGATGAATGTGAACATGCATATGTGT
1 AATGTGATGAATGTGAACATGCATATGTGT
46517384 GATAAGGCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (30 bp):
AATGTGATGAATGTGAACATGCATATGTGT
Found at i:46517364 original size:77 final size:77
Alignment explanation
Indices: 46517277--46517426 Score: 300
Period size: 77 Copynumber: 1.9 Consensus size: 77
46517267 TCGGATGGCC
46517277 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
46517342 ATGCATATGTGT
66 ATGCATATGTGT
46517354 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
46517419 ATGCATAT
66 ATGCATAT
46517427 ATGAGATAAG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (77 bp):
AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCATATGTGT
Found at i:46517410 original size:47 final size:47
Alignment explanation
Indices: 46517354--46517733 Score: 636
Period size: 47 Copynumber: 8.1 Consensus size: 47
46517344 GCATATGTGT
*
46517354 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
46517401 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
46517448 AATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
46517495 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
46517542 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
46517589 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
46517636 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * * * *
46517683 AATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCC
46517730 AATG
1 AATG
46517734 CGAAATGTGT
Statistics
Matches: 317, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 314 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:46517690 original size:22 final size:22
Alignment explanation
Indices: 46517615--46517690 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
46517605 ACATGCATAT
*
46517615 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
46517637 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
46517661 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
46517684 ATGTGAT
1 ATGTGAT
46517691 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:46517767 original size:46 final size:46
Alignment explanation
Indices: 46517707--46517843 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
46517697 GGAAGTGTAT
*
46517707 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * * *
46517753 ATATGAGGTTAAGCCGAATGGCTAATTTGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * *
46517799 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
46517844 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:46519792 original size:30 final size:30
Alignment explanation
Indices: 46519737--46519867 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
46519727 TATAGTAATC
*
46519737 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
46519766 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
46519796 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
46519824 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
46519854 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46519868 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:46519847 original size:58 final size:58
Alignment explanation
Indices: 46519736--46519867 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
46519726 ATATAGTAAT
* * * * *
46519736 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
46519795 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
46519853 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
46519868 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:46527745 original size:30 final size:30
Alignment explanation
Indices: 46527690--46527820 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
46527680 ATAGTGAATC
*
46527690 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
46527719 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
46527749 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
46527777 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
46527807 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46527821 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:46527800 original size:58 final size:58
Alignment explanation
Indices: 46527689--46527820 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
46527679 TATAGTGAAT
* * * * *
46527689 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
46527748 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
46527806 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
46527821 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:46532366 original size:24 final size:23
Alignment explanation
Indices: 46532338--46532385 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
46532328 ACCTTTGCTC
*
46532338 TTTTAGCATGAACTTGTCTTACCT
1 TTTTAGCAT-AACTCGTCTTACCT
*
46532362 TTTTAGTATAACTCGTCTTACCT
1 TTTTAGCATAACTCGTCTTACCT
46532385 T
1 T
46532386 ACCTTACCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (23 bp):
TTTTAGCATAACTCGTCTTACCT
Found at i:46532644 original size:55 final size:53
Alignment explanation
Indices: 46532454--46532708 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
46532444 ACGCGGGTAC
* * * * *
46532454 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
46532503 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
46532556 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
46532611 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
46532664 CCTTACCAATTGCCATGCCTTGGCATGATCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
46532709 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:46532645 original size:108 final size:110
Alignment explanation
Indices: 46532501--46532701 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
46532491 ATCCTTTTGA
* *
46532501 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
46532564 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGATCTTACATGGGACCTTTGCCTTATAGT
* * *
46532609 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
46532674 TGCCATGCCTTGGCATGATCTTACATGG
66 TGCCATGCCTTGGCATGATCTTACATGG
46532702 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGATCTTACATGGGACCTTTGCCTTATAGT
Found at i:46537638 original size:29 final size:29
Alignment explanation
Indices: 46537595--46537668 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
46537585 GTGACGAGAT
*
46537595 TGGCACTAAGCGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
46537624 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
46537653 TAGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
46537669 ATTTACTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:46537682 original size:24 final size:24
Alignment explanation
Indices: 46537655--46537765 Score: 204
Period size: 24 Copynumber: 4.6 Consensus size: 24
46537645 GAAATATATA
46537655 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46537679 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46537703 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
**
46537727 GCACTATGTGTGCGATTCGCTATG
1 GCACTATGTGTGCGATTTACTATG
46537751 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
46537766 ACATAATAAG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:46537779 original size:48 final size:48
Alignment explanation
Indices: 46537655--46537787 Score: 160
Period size: 48 Copynumber: 2.8 Consensus size: 48
46537645 GAAATATATA
** * * *
46537655 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATG
** * * *
46537703 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGCTATG
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATG
46537751 GCACTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ACATAATATAGCACTATGTGTGC
46537788 CACATTCGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 73 0.94
49 5 0.06
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATG
Found at i:46540406 original size:40 final size:40
Alignment explanation
Indices: 46540361--46540528 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
46540351 CGGAATATAA
46540361 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
46540401 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46540441 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
46540481 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46540521 CCGGATAT
1 CCGGATAT
46540529 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46548792 original size:24 final size:24
Alignment explanation
Indices: 46548765--46548903 Score: 260
Period size: 24 Copynumber: 5.8 Consensus size: 24
46548755 GCTGGAAATA
46548765 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
46548789 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
46548813 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
46548837 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
46548861 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
46548885 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
46548904 ACATAATAAG
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 113 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:46548917 original size:72 final size:72
Alignment explanation
Indices: 46548764--46548925 Score: 245
Period size: 72 Copynumber: 2.2 Consensus size: 72
46548754 TGCTGGAAAT
* *
46548764 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
**
46548829 CGATTTA
66 CGACATA
* * *
46548836 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
46548901 CGAACATA
66 CG-ACATA
46548909 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
46548926 CACATTCGGT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
72 77 0.94
73 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (72 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
CGACATA
Found at i:46564469 original size:49 final size:48
Alignment explanation
Indices: 46564343--46565036 Score: 1086
Period size: 49 Copynumber: 14.5 Consensus size: 48
46564333 CCCTTCGGGA
* * * * * *
46564343 CTTATCAC-ATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACTATATATACACCTT-CACATTCATCACATCGGCCATTAGGC
* * *
46564390 CCTATCAC-ATATATACACTTTCACATTCATCACATTGGCCATTAGG-
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
46564436 CTGTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGC
46564486 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGC
*
46564535 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
46564582 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGC
*
46564631 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
*
46564678 CTTATCAC-ATATATACACCTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
*
46564725 CTTATCAC-ATATATCCACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
46564772 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGC
46564821 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGC
*
46564870 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
46564917 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGC
*
46564966 CTTAT-AC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
*
46565012 CTTATCACGTATATATACACTTTCA
1 CTTATCAC-TATATATACACCTTCA
46565037 TAAATTTTAA
Statistics
Matches: 612, Mismatches: 21, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
46 44 0.07
47 272 0.44
48 4 0.01
49 290 0.47
50 2 0.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.31
Consensus pattern (48 bp):
CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGC
Found at i:46564547 original size:96 final size:95
Alignment explanation
Indices: 46564343--46565036 Score: 1087
Period size: 96 Copynumber: 7.3 Consensus size: 95
46564333 CCCTTCGGGA
* * * * * * *
46564343 CTTATCAC-ATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACTATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
46564406 ACTTTCACATTCATCACATTGGCCATTAGG-
65 ACCTTCACATTCATCACATCGGCCATTAGGC
46564436 CTGTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CT-TATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
46564501 TACACCTTCACATTCATCACATCGGCCATTAGGC
62 TACACCTTCACATTCATCACATCGGCCATTAGGC
*
46564535 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
46564599 CACCTTCACATTCATCACATCGGCCATTAGGC
64 CACCTTCACATTCATCACATCGGCCATTAGGC
*
46564631 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
46564695 CCTTCACATTCATCACATCGGCCATTGGGC
66 CCTTCACATTCATCACATCGGCCATTAGGC
*
46564725 CTTATCAC-ATATATCCACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
46564789 CACCTTCACATTCATCACATCGGCCATTAGGC
64 CACCTTCACATTCATCACATCGGCCATTAGGC
46564821 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
46564886 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACCTTCACATTCATCACATCGGCCATTAGGC
46564917 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATATAC
1 CTTATCAC-TATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
46564981 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACCTTCACATTCATCACATCGGCCATTAGGC
*
46565012 CTTATCACGTATATATACACTTTCA
1 CTTATCAC-TATATATACACCTTCA
46565037 TAAATTTTAA
Statistics
Matches: 572, Mismatches: 18, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
93 2 0.00
94 97 0.17
95 64 0.11
96 316 0.55
97 3 0.01
98 88 0.15
99 2 0.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.31
Consensus pattern (95 bp):
CTTATCACTATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CCTTCACATTCATCACATCGGCCATTAGGC
Found at i:46564973 original size:38 final size:41
Alignment explanation
Indices: 46564933--46565016 Score: 114
Period size: 46 Copynumber: 1.9 Consensus size: 41
46564923 ACATATATAT
*
46564933 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATACATATA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAC----A
46564978 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 -ACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
46565017 CACGTATATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (41 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATACA
Found at i:46567435 original size:12 final size:12
Alignment explanation
Indices: 46567418--46567447 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46567408 CCTCACACGC
46567418 CCGTGTGCCAAG
1 CCGTGTGCCAAG
*
46567430 CCGTGTGCTAAG
1 CCGTGTGCCAAG
46567442 CCGTGT
1 CCGTGT
46567448 AACTGCCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.30, G:0.33, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAAG
Found at i:46571462 original size:2 final size:2
Alignment explanation
Indices: 46571455--46571488 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
46571445 CATGGTTTAG
46571455 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46571489 GTATTGAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46583149 original size:40 final size:40
Alignment explanation
Indices: 46583041--46583290 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
46583031 CGGGATTTAA
* * * * *
46583041 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * ** * *
46583081 CCGGATTTGGT-GACTTACACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46583121 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46583161 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46583201 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46583241 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46583281 CCGGATATAT
1 CCGGATATAT
46583291 TTCCAATGTT
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 190 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:46591343 original size:40 final size:40
Alignment explanation
Indices: 46591235--46591484 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
46591225 CGGGATTTAA
* * * * *
46591235 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
46591275 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46591315 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46591355 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46591395 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46591435 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46591475 CCGGATATAT
1 CCGGATATAT
46591485 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:46597732 original size:39 final size:39
Alignment explanation
Indices: 46597687--46597877 Score: 301
Period size: 39 Copynumber: 4.9 Consensus size: 39
46597677 ATGCAAGACA
* *
46597687 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
46597726 CTGGAAATATATTCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
46597765 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* *
46597804 CTGGAAATGTATCCGGGCCAAAGTCCCACAGGCTTCATG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* **
46597843 CGGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTT
46597878 TGTACTGGTA
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 140 1.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:46604012 original size:39 final size:39
Alignment explanation
Indices: 46603967--46604157 Score: 337
Period size: 39 Copynumber: 4.9 Consensus size: 39
46603957 ATGCAAGACA
*
46603967 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
46604006 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
46604045 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
46604084 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
* **
46604123 CGGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTT
46604158 TGTACTGGTA
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:46613145 original size:28 final size:28
Alignment explanation
Indices: 46613098--46613166 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
46613088 ATTTAAACTC
46613098 TAGGGGT-ATATT-GGTAATTTTGCTCTT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
46613125 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
46613153 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
46613167 TGTTCTACGT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 9 0.22
28 31 0.77
ACGTcount: A:0.19, C:0.09, G:0.28, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:46614837 original size:46 final size:46
Alignment explanation
Indices: 46614748--46614837 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
46614738 ATATCTAATA
* *
46614748 ATAAAAATTTCAAATATCAATAATACAGTAAATAATAATAATTTTC
1 ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
**
46614794 ATAAAAATTTAAAATATCCGTAATA-A-TAAATATAGTAAGAATTT
1 ATAAAAATTTAAAATATCAATAATACAGTAAATA-A-TAAGAATTT
46614838 CCTAGTAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 6 0.16
45 2 0.05
46 30 0.79
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (46 bp):
ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
Found at i:46617242 original size:28 final size:28
Alignment explanation
Indices: 46617209--46617265 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
46617199 AGGGTATATT
46617209 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
46617237 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
46617265 G
1 G
46617266 TGTTCTACGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.46
Consensus pattern (28 bp):
GGTAATTTTGCTCTTTAGGGGTAATTTC
Found at i:46618938 original size:46 final size:46
Alignment explanation
Indices: 46618849--46618938 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
46618839 ATATCTAATA
* *
46618849 ATAAAAATTTCAAATATCAATAATACAGTAAATAATAATAATTTTC
1 ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
**
46618895 ATAAAAATTTAAAATATCCGTAATA-A-TAAATATAGTAAGAATTT
1 ATAAAAATTTAAAATATCAATAATACAGTAAATA-A-TAAGAATTT
46618939 CCTAGTAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 6 0.16
45 2 0.05
46 30 0.79
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (46 bp):
ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
Found at i:46623884 original size:93 final size:93
Alignment explanation
Indices: 46623772--46623944 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
46623762 CGCCCATAAG
* *
46623772 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46623837 ACAAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
*
46623865 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
46623930 ACGAGTTCGGATGCC
66 ACAAGTTCGGATGCC
46623945 CAAATATCCC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:46623940 original size:46 final size:46
Alignment explanation
Indices: 46623765--46623940 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
46623755 TGTAACCCGC
* * *
46623765 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
46623811 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
46623861 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46623904 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
46623941 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46629414 original size:2 final size:2
Alignment explanation
Indices: 46629409--46629442 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
46629399 CCTAATCTGC
46629409 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46629443 GCATGGTGCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46635437 original size:2 final size:2
Alignment explanation
Indices: 46635430--46635471 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
46635420 ACCAGAACAG
46635430 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46635472 GTGACGAAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46636158 original size:27 final size:27
Alignment explanation
Indices: 46636111--46636251 Score: 169
Period size: 27 Copynumber: 5.2 Consensus size: 27
46636101 TGGCAAAATG
* * * *
46636111 GTAATTTTACCCTA-TGAGGGTATCTCG
1 GTAATTCTACCCTACAG-GGGTATTTCA
*
46636138 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
46636165 GTAATTCTACCCTATAGGGCTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
46636192 GTAATTCTACCTTACAGGGGTATTT-A
1 GTAATTCTACCCTACAGGGGTATTTCA
*
46636218 GGTAATTCTACCTTACAGGGGTATTTCA
1 -GTAATTCTACCCTACAGGGGTATTTCA
46636246 GTAATT
1 GTAATT
46636252 TTGCTAATCG
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 97 0.97
28 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:46636196 original size:54 final size:53
Alignment explanation
Indices: 46636110--46636251 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 53
46636100 GTGGCAAAAT
* * *
46636110 GGTAATTTTACCCTATGAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTA
1 GGTAATTCTACCCTAT-AGGGTATTTCAGTAATTCTACCCTACAGGGGTA-TTTA
*
46636165 -GTAATTCTACCCTATAGGGCTATTTCAGTAATTCTACCTTACAGGGGTATTTA
1 GGTAATTCTACCCTATAGGG-TATTTCAGTAATTCTACCCTACAGGGGTATTTA
* *
46636218 GGTAATTCTACCTTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTATA-GGGTATTTCAGTAATT
46636252 TTGCTAATCG
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
53 8 0.10
54 67 0.86
55 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (53 bp):
GGTAATTCTACCCTATAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTA
Found at i:46636276 original size:54 final size:54
Alignment explanation
Indices: 46636109--46636278 Score: 168
Period size: 54 Copynumber: 3.1 Consensus size: 54
46636099 AGTGGCAAAA
* * * *
46636109 TGGTAATTTTACCCTATGAGGG-TATCTCGGTAATTCTACCCT-ACAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGCTATTTCAGTAATTCTA-CCTAACAGGGGTATTT
* * *
46636163 TAGTAATTCTACCCTATAGGGCTATTTCAGTAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGCTATTTCAGTAATTCTACCTAACAGGGGTATTT
* * * **
46636217 AGGTAATTCTACCTTACAGGGGTATTTCAGTAATT-TTGCTAATC-GAGGGTATTT
1 TGGTAATTCTACCCTACAGGGCTATTTCAGTAATTCTACCTAA-CAG-GGGTATTT
46636271 TGGTAATT
1 TGGTAATT
46636279 TGGTAAACTA
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
53 12 0.12
54 86 0.88
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.39
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAGGGCTATTTCAGTAATTCTACCTAACAGGGGTATTT
Found at i:46656100 original size:26 final size:27
Alignment explanation
Indices: 46656071--46656124 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
46656061 TCACACAAGT
*
46656071 TAGTCATTT-ACGCCCGAGGGCCAAAA
1 TAGTCATTTAACACCCGAGGGCCAAAA
* *
46656097 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACCCGAGGGCCAAAA
46656124 T
1 T
46656125 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACCCGAGGGCCAAAA
Found at i:46656156 original size:27 final size:26
Alignment explanation
Indices: 46656126--46656296 Score: 200
Period size: 27 Copynumber: 6.4 Consensus size: 26
46656116 GGGCAAAATG
* * *
46656126 GTAATTTTACCCCACAAGGGTATCTC
1 GTAATTCTACCCTACAAGGGTATTTC
*
46656152 AGTAATTCTACCCTACATGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
*
46656179 GGTATTTCTACCCTACAAGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
*
46656206 GATAATTCTATCCTAC-AGGGTATTTC
1 G-TAATTCTACCCTACAAGGGTATTTC
46656232 GATAATTCTACCCTACAAGGGTATTTC
1 G-TAATTCTACCCTACAAGGGTATTTC
* * *
46656259 AATAATTCTACCCCACAGGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
46656286 GGTAATTCTAC
1 -GTAATTCTAC
46656297 AACTTATCCA
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 26 0.21
27 100 0.79
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (26 bp):
GTAATTCTACCCTACAAGGGTATTTC
Found at i:46656197 original size:54 final size:53
Alignment explanation
Indices: 46656125--46656296 Score: 238
Period size: 54 Copynumber: 3.2 Consensus size: 53
46656115 GGGGCAAAAT
* * *
46656125 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACA-GGGTATTTC
* *
46656179 GGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTATCCTACAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGTATTTC
* * *
46656232 GATAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCCACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACA-GGGTATTTC
46656286 GGTAATTCTAC
1 GGTAATTCTAC
46656297 AACTTATCCA
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
53 48 0.46
54 56 0.54
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (53 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGTATTTC
Found at i:46660639 original size:27 final size:27
Alignment explanation
Indices: 46660608--46660660 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
46660598 AGACTCGCTT
*
46660608 TGTGGTAAAATAACTGTATTGCCCTTG
1 TGTGGTAAAATAACTATATTGCCCTTG
* * *
46660635 TGTGGTAGAATGACTATTTTGCCCTT
1 TGTGGTAAAATAACTATATTGCCCTT
46660661 ATATGCTAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (27 bp):
TGTGGTAAAATAACTATATTGCCCTTG
Found at i:46663886 original size:30 final size:30
Alignment explanation
Indices: 46663833--46663889 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
46663823 TCGAGCATTG
*
46663833 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGTAAATATACAAAAGTTTAA
* * *
46663863 GGGCAAAATTGTAATTTTACAAAAGTT
1 GGGCAAAAGTGTAAATATACAAAAGTT
46663890 AGAGTTAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATACAAAAGTTTAA
Found at i:46666284 original size:27 final size:28
Alignment explanation
Indices: 46666246--46666299 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
46666236 AGACTCAGTG
46666246 CTATATAATC-AACTCGCACACTTAGTA
1 CTATATAATCAAACTCGCACACTTAGTA
*
46666273 CTATATGATCAAACTCGCACACTTAGT
1 CTATATAATCAAACTCGCACACTTAGT
46666300 GCTGTACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 9 0.36
28 16 0.64
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (28 bp):
CTATATAATCAAACTCGCACACTTAGTA
Found at i:46676711 original size:22 final size:22
Alignment explanation
Indices: 46676657--46676703 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
46676647 AGCGCCATAG
* *
46676657 ACAGGACAACAAATAGCCGTAA
1 ACAGGACAGCACATAGCCGTAA
46676679 ACAGGACAGCACATAGCCGTAA
1 ACAGGACAGCACATAGCCGTAA
46676701 ACA
1 ACA
46676704 TTACAGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.26, G:0.19, T:0.09
Consensus pattern (22 bp):
ACAGGACAGCACATAGCCGTAA
Found at i:46677442 original size:27 final size:27
Alignment explanation
Indices: 46677410--46677681 Score: 221
Period size: 27 Copynumber: 10.0 Consensus size: 27
46677400 TTAGTAAATC
46677410 TACAAATCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * *
46677437 TGCAAA-CTAATGGTACTTCT-GTAATTT
1 TACAAATC-AAGGGTA-TTTTGGTAATTT
**
46677464 TTGAAAGTCAAGGGTATTTCT-GTAATTT
1 TACAAA-TCAAGGGTATTT-TGGTAATTT
* *
46677492 TTCAAATCAAGGGTATTTTGATAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
** *
46677519 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* *
46677546 TACAAATTTAA-GGTATTATGGTAATTT
1 TACAAA-TCAAGGGTATTTTGGTAATTT
* * *
46677573 TACAAGTCGAGGGTATTATGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * * *
46677600 CATAAATTAGGGGTATTTAT-GTAATTT
1 TACAAATCAAGGGTATTT-TGGTAATTT
* * * *
46677627 TAAAAACCAGGGGTAGTTTGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
* * *
46677654 TACAAACCAGGGGTATTTTGGTGATTT
1 TACAAATCAAGGGTATTTTGGTAATTT
46677681 T
1 T
46677682 GTAAACTAAG
Statistics
Matches: 199, Mismatches: 36, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.03
27 168 0.84
28 25 0.13
29 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTTGGTAATTT
Found at i:46677695 original size:81 final size:79
Alignment explanation
Indices: 46677410--46677707 Score: 269
Period size: 81 Copynumber: 3.7 Consensus size: 79
46677400 TTAGTAAATC
* * * * * *
46677410 TACAAATCAAGGGTATTTTGGTAATTTTGCAAACTAATGGTACTTCTGTAATTTTTGAAAGTCAA
1 TACAAATCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTATGTAA-TTTTAAAAATC-A
*
46677475 GGGTATTTCTGTAATTT
64 GGGTATTT-GGTAATTT
* * * * *
46677492 TTCAAATCAAGGGTATTTTGATAATTTTGTAAA-TCAGGGGTATTT-TGGTAATTTTACAAATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTGTAAACT-AAGGGTATTTAT-GTAATTTTA-AAAATC
*
46677555 AAGGTATTATGGTAATTT
63 AGGGTATT-TGGTAATTT
* * * ** * * *
46677573 TACAAGTCGAGGGTATTATGGTAATTTCATAAATTAGGGGTATTTATGTAATTTTAAAAACCAGG
1 TACAAATCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTATGTAATTTTAAAAATCA-G
46677638 GGTAGTTTGGTAATTT
65 GGTA-TTTGGTAATTT
* * * *
46677654 TACAAACCAGGGGTATTTTGGTGATTTTGTAAACTAAGGGTATTCA-GTAATTTT
1 TACAAATCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTATGTAATTTT
46677708 GTTAACCAAA
Statistics
Matches: 175, Mismatches: 33, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
80 12 0.07
81 113 0.65
82 50 0.29
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (79 bp):
TACAAATCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTATGTAATTTTAAAAATCAGG
GTATTTGGTAATTT
Found at i:46677751 original size:27 final size:27
Alignment explanation
Indices: 46677721--46677796 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
46677711 AACCAAAAGT
* *
46677721 ATTTCAGTAATTTTACCCTCCAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
46677748 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
46677775 ATTTCAGTAATACTAGCCTACA
1 ATTTCAGTAATTCTACCCTACA
46677797 AATATGAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:46680592 original size:33 final size:34
Alignment explanation
Indices: 46680555--46680629 Score: 134
Period size: 34 Copynumber: 2.2 Consensus size: 34
46680545 AGTGACAGTC
46680555 CAGTATCAGTGT-GGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
*
46680588 CAGTATCAGTGTGGGCCTTAGCCCATTATAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
46680622 CAGTATCA
1 CAGTATCA
46680630 TAAATGCAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
33 12 0.30
34 28 0.70
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:46681235 original size:27 final size:27
Alignment explanation
Indices: 46681197--46681253 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
46681187 CCCATTTTGG
46681197 CTATTTGACTAATCTGACCACTCTTCA
1 CTATTTGACTAATCTGACCACTCTTCA
*
46681224 CTATTTGACTAATCTGACCATTCTTCA
1 CTATTTGACTAATCTGACCACTCTTCA
46681251 CTA
1 CTA
46681254 CGGATCAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.26, C:0.28, G:0.07, T:0.39
Consensus pattern (27 bp):
CTATTTGACTAATCTGACCACTCTTCA
Found at i:46682383 original size:43 final size:43
Alignment explanation
Indices: 46682305--46682423 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 43
46682295 TCTGAACTCA
* * * ** *
46682305 TTCACCAGTATT-TCGCCTGCTAGGCTTGAATCCCGATATCAT
1 TTCACCAGAATTATAGCCTACTAGGCCCGAAGCCCGATATCAT
*
46682347 TTCACCAGAATTATAGCCTACTAGGCCCGAAGCCCGATATTAT
1 TTCACCAGAATTATAGCCTACTAGGCCCGAAGCCCGATATCAT
* * * * *
46682390 CTCACCGGCATTATAGCCTTCTAGACCCGAAGCC
1 TTCACCAGAATTATAGCCTACTAGGCCCGAAGCC
46682424 TAAATATCAC
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 11 0.17
43 53 0.83
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (43 bp):
TTCACCAGAATTATAGCCTACTAGGCCCGAAGCCCGATATCAT
Found at i:46686886 original size:39 final size:39
Alignment explanation
Indices: 46686843--46686929 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
46686833 CCGGCAATTT
*
46686843 GCCTGCTAGGTATAAACATGAACTTAACACCGGCATGAG
1 GCCTGCTAGGTATAAACATGAACTTAACACCGGCACGAG
* * *
46686882 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACATGAACTTAACACCGGCACGAG
46686921 GCCTGCTAG
1 GCCTGCTAG
46686930 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACATGAACTTAACACCGGCACGAG
Found at i:46695916 original size:29 final size:29
Alignment explanation
Indices: 46695828--46695930 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
46695818 TACTCGATCA
** *
46695828 CGCACACTTAGTGCCATGTGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ACATTTCAAGCT
* * * *
46695857 CGCACACATAGTGCCATATAGTCCGAA-CT
1 CGCACACTTAGTGCCATACATTTC-AAGCT
46695886 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAGCT
*
46695915 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
46695931 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 4 0.07
29 54 0.90
30 2 0.03
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.23
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAGCT
Found at i:46697273 original size:18 final size:20
Alignment explanation
Indices: 46697238--46697276 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
46697228 TCCACACACA
46697238 TTTTTTTTCATCATTTTCTTT
1 TTTTTTTTCA-CATTTTCTTT
46697259 TTTTTTTTC-CA-TTTCTTT
1 TTTTTTTTCACATTTTCTTT
46697277 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
21 9 0.50
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTTCACATTTTCTTT
Found at i:46697786 original size:39 final size:39
Alignment explanation
Indices: 46697737--46697957 Score: 316
Period size: 39 Copynumber: 5.6 Consensus size: 39
46697727 AATGTTCGAG
46697737 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
46697776 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
46697815 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
46697854 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
46697893 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
46697933 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
46697958 TGTTTTGAAC
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 125 0.76
40 40 0.24
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:46699996 original size:27 final size:26
Alignment explanation
Indices: 46699946--46700071 Score: 110
Period size: 27 Copynumber: 4.7 Consensus size: 26
46699936 AGGTAATCCG
*
46699946 ATAATTTTACAAACTGAGGG-ATTTCA
1 ATAATTTTACAAA-TCAGGGTATTTCA
* *
46699972 GTAAATTTACAAATCAGGAGTATTTCA
1 ATAATTTTACAAATCAGG-GTATTTCA
** *
46699999 ATAATTTTTTAAACTGAGGGTATTTCA
1 ATAATTTTACAAA-TCAGGGTATTTCA
* ** *
46700026 ATAATTTTAAAAACTGGGGGTATTTCG
1 ATAATTTTACAAA-TCAGGGTATTTCA
*
46700053 GTAATTTTACAAATCAGGG
1 ATAATTTTACAAATCAGGG
46700072 GTTTTATCGA
Statistics
Matches: 81, Mismatches: 16, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
25 4 0.05
26 16 0.20
27 57 0.70
28 4 0.05
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (26 bp):
ATAATTTTACAAATCAGGGTATTTCA
Found at i:46700003 original size:53 final size:54
Alignment explanation
Indices: 46699946--46700065 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 54
46699936 AGGTAATCCG
* *
46699946 ATAATTTTACAAACTGAGGG-ATTTCAGTAAATTTACAAA-TCAGGAGTATTTCA
1 ATAATTTTACAAACTGAGGGTATTTCAATAAATTTAAAAACT-AGGAGTATTTCA
** * * * *
46699999 ATAATTTTTTAAACTGAGGGTATTTCAATAATTTTAAAAACTGGGGGTATTTCG
1 ATAATTTTACAAACTGAGGGTATTTCAATAAATTTAAAAACTAGGAGTATTTCA
*
46700053 GTAATTTTACAAA
1 ATAATTTTACAAA
46700066 TCAGGGGTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
53 18 0.33
54 35 0.65
55 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (54 bp):
ATAATTTTACAAACTGAGGGTATTTCAATAAATTTAAAAACTAGGAGTATTTCA
Found at i:46704666 original size:27 final size:28
Alignment explanation
Indices: 46704636--46704705 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
46704626 ATAATAAGTC
*
46704636 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
46704663 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
46704691 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46704706 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46711381 original size:39 final size:40
Alignment explanation
Indices: 46711323--46711410 Score: 115
Period size: 39 Copynumber: 2.2 Consensus size: 40
46711313 TCGCTCAAAA
* *
46711323 CCTTCGGGACATAGCCCGGTTATAATAGCTCGCACAAATG
1 CCTTCGGGACATAGACCGGTTATAATAACTCGCACAAATG
* * **
46711363 CCTTCGGGACTTA-ACCGGTTTTGGTAACTCGCACAAATG
1 CCTTCGGGACATAGACCGGTTATAATAACTCGCACAAATG
46711402 CCTTCGGGA
1 CCTTCGGGA
46711411 ATTGACCCGG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 30 0.71
40 12 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACATAGACCGGTTATAATAACTCGCACAAATG
Found at i:46711461 original size:40 final size:40
Alignment explanation
Indices: 46711323--46711462 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
46711313 TCGCTCAAAA
* * * *
46711323 CCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCACAAATG
* * * *
46711363 CCTTCGGGACTTA-ACCGGTTTTGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATG
* *
46711402 CCTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAA-G
1 CCTTCGGGACTTAG-CCCGGATTTAGTAAC-TAGCACAAATG
46711442 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
46711463 ACCATTCGAA
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
39 30 0.36
40 44 0.53
41 9 0.11
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATG
Found at i:46719382 original size:40 final size:40
Alignment explanation
Indices: 46719318--46719463 Score: 114
Period size: 40 Copynumber: 3.6 Consensus size: 40
46719308 GCGACTCGCT
* ** * *
46719318 CAAAAGCCTTCGGGACACAGCCCGGTTATAATAGCTCACA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAATAACTCACA
* * ** *
46719358 TAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAATAACTCACA
* * * * *
46719398 CAAATGCCTTCGGGAATTGACCCGGATT-TAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAATAACTCA-CA
* *
46719439 CAAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
46719464 ATACCATTCG
Statistics
Matches: 83, Mismatches: 21, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
40 58 0.70
41 25 0.30
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAATAACTCACA
Found at i:46719452 original size:41 final size:40
Alignment explanation
Indices: 46719354--46719465 Score: 116
Period size: 41 Copynumber: 2.7 Consensus size: 40
46719344 TATAATAGCT
* * * *
46719354 CACATAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCG
1 CACA-AAA-GCCTTCGGGAATTAACCCGGATTTAGTAACTAG
* * *
46719396 CACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAG
1 CACAAAAGCCTTCGGGAATTAACCCGGATTTAGTAAC-TAG
* *
46719437 CACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CACAAAAGCCTTCGGGAATTAACCCGGAT
46719466 ACCATTCGAA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
40 25 0.43
41 29 0.50
42 4 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CACAAAAGCCTTCGGGAATTAACCCGGATTTAGTAACTAG
Found at i:46724113 original size:29 final size:29
Alignment explanation
Indices: 46724078--46724151 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
46724068 GTTGTGAGAT
* *
46724078 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
46724107 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
46724136 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46724152 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:46727704 original size:46 final size:46
Alignment explanation
Indices: 46727654--46727826 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
46727644 TGGTTGAGCA
* *
46727654 TCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
46727700 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACCAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
46727747 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
46727793 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46727827 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:46727810 original size:93 final size:93
Alignment explanation
Indices: 46727651--46727821 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
46727641 GGATGGTTGA
* *
46727651 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
46727716 TGAGTCCGAGTTCGTGAGATGTAACCAG
66 TGAGTCCAAGTTCGTGAGATGTAACCAG
* * * *
46727744 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
46727809 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
46727822 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACCAG
Found at i:46734818 original size:20 final size:18
Alignment explanation
Indices: 46734793--46734840 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
46734783 TAGGTAGTTC
*
46734793 TGGGCCATGTTGGGCCTAGA
1 TGGGCCATG-TGGGCCCA-A
*
46734813 TGGGCCGTGTGGGCCCAA
1 TGGGCCATGTGGGCCCAA
46734831 TGGGCTCATG
1 TGGGC-CATG
46734841 GGCCCCACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 6 0.25
19 10 0.42
20 8 0.33
ACGTcount: A:0.12, C:0.23, G:0.42, T:0.23
Consensus pattern (18 bp):
TGGGCCATGTGGGCCCAA
Found at i:46735723 original size:23 final size:23
Alignment explanation
Indices: 46735696--46735749 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
46735686 GTATATATAC
46735696 TAGCAGCTTTACTGCGTTACTAT
1 TAGCAGCTTTACTGCGTTACTAT
*
46735719 TAGCAGCTTTGCTGCGTTACTAT
1 TAGCAGCTTTACTGCGTTACTAT
*
46735742 TAGTAGCT
1 TAGCAGCT
46735750 ATGCTACGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (23 bp):
TAGCAGCTTTACTGCGTTACTAT
Found at i:46738979 original size:27 final size:27
Alignment explanation
Indices: 46738941--46738994 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
46738931 AGGTTCAACA
46738941 TGAAGTAAATCGCCATTCTCACATTTC
1 TGAAGTAAATCGCCATTCTCACATTTC
46738968 TGAAGTAAATCGCCATTCTCACATTTC
1 TGAAGTAAATCGCCATTCTCACATTTC
46738995 AACACAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (27 bp):
TGAAGTAAATCGCCATTCTCACATTTC
Found at i:46751738 original size:42 final size:42
Alignment explanation
Indices: 46751625--46751788 Score: 148
Period size: 42 Copynumber: 3.8 Consensus size: 42
46751615 TAAGATGCCA
* * *
46751625 ATGCCATATCCTAGATATGGTCTTACATGGGATCACATATATCG
1 ATGCCATATCCAAGATATGGTCTTACACGAGATCA-A-ATATCG
* * * * * ***
46751669 ATGTCGATAGCCCAGCTATGGTCTTACACGATATCTCGTATCG
1 ATG-CCATATCCAAGATATGGTCTTACACGAGATCAAATATCG
* * *
46751712 ATGCCATGTCCTAGATATGGTCTTACAGGAGATCAAATATCG
1 ATGCCATATCCAAGATATGGTCTTACACGAGATCAAATATCG
* * *
46751754 ATGTCATATCCAAGATATGGTTTTACACGAAATCA
1 ATGCCATATCCAAGATATGGTCTTACACGAGATCA
46751789 CACATAACCC
Statistics
Matches: 93, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
42 58 0.62
43 8 0.09
44 3 0.03
45 24 0.26
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCAAGATATGGTCTTACACGAGATCAAATATCG
Found at i:46754918 original size:31 final size:31
Alignment explanation
Indices: 46754877--46754940 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
46754867 CCTTTTCATA
*
46754877 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
46754908 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
46754939 TT
1 TT
46754941 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:46755186 original size:24 final size:24
Alignment explanation
Indices: 46755134--46755324 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
46755124 GCTTTATCAT
* *
46755134 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * *
46755159 ATAACTGGGGCAAAAGCTCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
*
46755183 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
46755207 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
46755231 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
46755255 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
46755279 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
46755302 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
46755325 TCACTTCCTC
Statistics
Matches: 152, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
23 21 0.14
24 120 0.79
25 11 0.07
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:46755397 original size:9 final size:9
Alignment explanation
Indices: 46755383--46755459 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
46755373 ATCTCGTGTG
46755383 CATATCATA
1 CATATCATA
*
46755392 CATATCATGTG
1 CATATCA--TA
46755403 CATATCATA
1 CATATCATA
* *
46755412 CATGTCATGTG
1 CATATCA--TA
46755423 CATATCATA
1 CATATCATA
*
46755432 CATATCATGTG
1 CATATCA--TA
46755443 CATATCATA
1 CATATCATA
46755452 CATATCAT
1 CATATCAT
46755460 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:46755402 original size:20 final size:20
Alignment explanation
Indices: 46755379--46755461 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
46755369 GAACATCTCG
46755379 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
46755399 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
46755419 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
46755439 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
46755459 TGT
1 TGT
46755462 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:46755408 original size:11 final size:11
Alignment explanation
Indices: 46755379--46755450 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
46755369 GAACATCTCG
46755379 TGTGCATATCA
1 TGTGCATATCA
*
46755390 --TACATATCA
1 TGTGCATATCA
46755399 TGTGCATATCA
1 TGTGCATATCA
* *
46755410 --TACATGTCA
1 TGTGCATATCA
46755419 TGTGCATATCA
1 TGTGCATATCA
*
46755430 --TACATATCA
1 TGTGCATATCA
46755439 TGTGCATATCA
1 TGTGCATATCA
46755450 T
1 T
46755451 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:46756809 original size:27 final size:27
Alignment explanation
Indices: 46756788--46757372 Score: 565
Period size: 27 Copynumber: 21.7 Consensus size: 27
46756778 AAGGGTATTT
*
46756788 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
46756815 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46756842 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
46756869 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
46756896 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
46756923 -CGATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * *
46756950 TGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** *
46756977 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
46757004 TAGTAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
46757031 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * ** *
46757058 CGGTAATTTTACAAATCGAGGGTACAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
46757085 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46757112 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46757139 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
46757166 CGGTAATTCTGTAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
46757193 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
46757220 CGGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
46757247 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46757274 -CGATAATTCTATAAATCGAGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * **
46757301 CAGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46757328 CAGTAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
* *
46757355 -CGATAATTTTGTAAATCG
1 TAG-TAATTCTGTAAATCG
46757373 GGAGTACTTT
Statistics
Matches: 483, Mismatches: 60, Indels: 30
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.01
27 471 0.98
28 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:46756848 original size:81 final size:81
Alignment explanation
Indices: 46756788--46757372 Score: 691
Period size: 81 Copynumber: 7.2 Consensus size: 81
46756778 AAGGGTATTT
* ** *
46756788 TAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTA
46756853 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* *
46756869 TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTAT
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCT
* *
46756933 GTAAATCGGGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * * * *
46756950 TGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCT
1 TAGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCT
46757014 ATAAA-CTGAGGGTAAAA
65 ATAAATC-GAGGGTAAAA
** * ** * *
46757031 CGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTACAACGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTA
46757096 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * ** *
46757112 CAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCT
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCT
* *
46757176 GTAAATTGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * *
46757193 TAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTT
1 TAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCT
*
46757257 ACAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * * * **
46757274 -CGATAATTCTATAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT
1 TAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCT
46757338 ATAAA-CTGAGGGTAAAA
65 ATAAATC-GAGGGTAAAA
* *
46757355 -CGATAATTTTGTAAATCG
1 TAG-TAATTCTGTAAATCG
46757373 GGAGTACTTT
Statistics
Matches: 438, Mismatches: 54, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
80 7 0.02
81 426 0.97
82 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:46757355 original size:54 final size:54
Alignment explanation
Indices: 46756790--46757372 Score: 663
Period size: 54 Copynumber: 10.8 Consensus size: 54
46756780 GGGTATTTTA
* * ** * * *
46756790 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
46756844 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * * * *
46756898 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * **
46756952 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
*
46757006 GTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * *
46757060 GTAATTTTACAAATCGAGGGTACAACGGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * ** *
46757114 GTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACG
* * ** *
46757168 GTAATTCTGTAAATTGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACG
* * * *
46757222 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * * *
46757276 ATAATTCTATAAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * *
46757330 GTAATTCTATAAA-CTGAGGGTAAAACGATAATTTTGTAAATCG
1 GTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTATAAATCG
46757373 GGAGTACTTT
Statistics
Matches: 463, Mismatches: 59, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
53 3 0.01
54 457 0.99
55 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:46759816 original size:24 final size:24
Alignment explanation
Indices: 46759789--46759837 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
46759779 ATATATTTTT
*
46759789 AGTATGGATCATGGATATTATATA
1 AGTATGAATCATGGATATTATATA
* *
46759813 AGTATGAATTATGTATATTATATA
1 AGTATGAATCATGGATATTATATA
46759837 A
1 A
46759838 AATAAAATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (24 bp):
AGTATGAATCATGGATATTATATA
Found at i:46776358 original size:70 final size:71
Alignment explanation
Indices: 46776208--46776370 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
46776198 GAGATGTATC
46776208 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46776273 AGGACA
66 AGGACA
46776279 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46776343 AGGACA
66 AGGACA
46776349 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
46776371 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:46777893 original size:44 final size:41
Alignment explanation
Indices: 46777845--46777939 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 41
46777835 AAATGATTAG
46777845 CCGAAGCTATAACGATATCGC-CTACTTAGTGCCATCATATTAAA
1 CCGAAGCTATAACGATATCGCAC-ACTTAGTGCCA-CATA--AAA
** * *
46777889 CCGAAGCTATCTCGGTATCGCACACTTAGTGCCACATAAAG
1 CCGAAGCTATAACGATATCGCACACTTAGTGCCACATAAAA
46777930 CCGAAGCTAT
1 CCGAAGCTAT
46777940 TCCAATTCGC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 12 0.26
43 4 0.09
44 29 0.63
45 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (41 bp):
CCGAAGCTATAACGATATCGCACACTTAGTGCCACATAAAA
Found at i:46784371 original size:40 final size:39
Alignment explanation
Indices: 46784287--46784470 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
46784277 TCGAATGATG
* * *
46784287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
46784327 TCCGGACTAAGATCTGAAGGCATTTGTGCGATTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
46784367 TCCGGGCT-AGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46784405 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
46784446 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
46784471 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 31 0.26
39 4 0.03
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46784424 original size:78 final size:80
Alignment explanation
Indices: 46784287--46784470 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 80
46784277 TCGAATGATG
* *
46784287 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCT-AGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
* *
46784351 TGTGCGATTTACTA-A
65 TATGCGAGTTACTATA
* * **
46784366 TTCCGGGCTAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
46784428 TTATGCGAGTTACTATA
64 TTATGCGAGTTACTATA
*
46784445 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTA-GTCCCGAAGGCATTTG
46784471 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 56 0.62
79 11 0.12
80 22 0.24
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
TCCGGGCTAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTATA
Found at i:46792987 original size:26 final size:26
Alignment explanation
Indices: 46792955--46793006 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
46792945 CTTTAATTAC
46792955 TAATTTACTAAACTAACCTTATTAAT
1 TAATTTACTAAACTAACCTTATTAAT
46792981 TAATTTACTAAACTAACCTTATTAAT
1 TAATTTACTAAACTAACCTTATTAAT
46793007 ATAACTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (26 bp):
TAATTTACTAAACTAACCTTATTAAT
Found at i:46794966 original size:31 final size:31
Alignment explanation
Indices: 46794906--46794969 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
46794896 CCTTTTCATA
**
46794906 TTTCATATTTCATAACACTAGGCTGAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
** *
46794937 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
46794968 TT
1 TT
46794970 ACTGTAAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCAAAGCCT
Found at i:46795291 original size:27 final size:28
Alignment explanation
Indices: 46795238--46795304 Score: 127
Period size: 27 Copynumber: 2.4 Consensus size: 28
46795228 TTTGTACAGT
46795238 ACTAAGTGTGCGAGTTTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATATAGC
46795266 ACTAAGTGTGCGAG-TTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATATAGC
46795293 ACTAAGTGTGCG
1 ACTAAGTGTGCG
46795305 GACTCACTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
27 25 0.64
28 14 0.36
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTGATTATATAGC
Found at i:46795315 original size:27 final size:27
Alignment explanation
Indices: 46795238--46795316 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
46795228 TTTGTACAGT
* * *
46795238 ACTAAGTGTGCGAGTTTGATTATATAGC
1 ACTAAGTGTGCGAG-CTCACTATATAGC
* * *
46795266 ACTAAGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAGCTCACTATATAGC
46795293 ACTAAGTGTGCG-GACTCACTATAT
1 ACTAAGTGTGCGAG-CTCACTATAT
46795317 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 32 0.68
28 14 0.30
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (27 bp):
ACTAAGTGTGCGAGCTCACTATATAGC
Found at i:46804198 original size:7 final size:7
Alignment explanation
Indices: 46804186--46804213 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
46804176 CCATAGCCCT
46804186 TTTCATA
1 TTTCATA
46804193 TTTCATA
1 TTTCATA
46804200 TTTCATA
1 TTTCATA
46804207 TTTCATA
1 TTTCATA
46804214 ACACTAGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:46804506 original size:23 final size:23
Alignment explanation
Indices: 46804476--46804597 Score: 181
Period size: 23 Copynumber: 5.2 Consensus size: 23
46804466 GGCCTAGCCT
*
46804476 CTTTTAATAACTGGGGCAAAAGC
1 CTTTTAATAACTGGGGCATAAGC
46804499 CTTTTAATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
46804522 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
*
46804546 CTTTTAATAACTAGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
* *
46804569 CCTTTAATAACCGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
46804593 CTTTT
1 CTTTT
46804598 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
23 63 0.71
24 26 0.29
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:46804557 original size:70 final size:71
Alignment explanation
Indices: 46804457--46804596 Score: 212
Period size: 70 Copynumber: 2.0 Consensus size: 71
46804447 GCTTTATCAT
* * * *
46804457 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCTTTTAATAACTGGGGCATAAGC
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTAATAACCGGGGCATAAGC
46804522 CCTTTA
66 CCTTTA
*
46804528 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCATAAGCCCTTTAATAACCGGGGCATAAG
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTAATAACCGGGGCATAAG
46804591 CCCTTT
65 CCCTTT
46804597 TTCACTTCCT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 51 0.81
71 12 0.19
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (71 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTAATAACCGGGGCATAAGC
CCTTTA
Found at i:46804566 original size:47 final size:47
Alignment explanation
Indices: 46804478--46804597 Score: 206
Period size: 47 Copynumber: 2.6 Consensus size: 47
46804468 CCTAGCCTCT
* *
46804478 TTTAATAACTGGGGCAAAAG-CCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCC
46804524 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCC
*
46804571 TTTAATAACCGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
46804598 TCACTTCCTC
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 19 0.27
47 51 0.73
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCC
Found at i:46804674 original size:20 final size:20
Alignment explanation
Indices: 46804649--46804713 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
46804639 ATGAATACAG
*
46804649 CATGTGCATATGATACATAT
1 CATGTGCATATCATACATAT
*
46804669 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
* *
46804689 CATGTGCACATCATACATAC
1 CATGTGCATATCATACATAT
46804709 CATGT
1 CATGT
46804714 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:46806480 original size:27 final size:28
Alignment explanation
Indices: 46806424--46806493 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
46806414 AAATTTGTAC
*
46806424 AGCACTAAGTGTTCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46806452 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46806479 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46806494 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 25 0.61
28 16 0.39
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:46806504 original size:27 final size:27
Alignment explanation
Indices: 46806424--46806505 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
46806414 AAATTTGTAC
* * * *
46806424 AGCACTAAGTGTTCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
* * *
46806452 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
46806479 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
46806506 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 32 0.65
28 16 0.33
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:46815610 original size:30 final size:30
Alignment explanation
Indices: 46815574--46815674 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
46815564 GACAAGATTG
* * *
46815574 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
46815604 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
46815632 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
46815661 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
46815675 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:46815686 original size:29 final size:28
Alignment explanation
Indices: 46815603--46815678 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
46815593 AAAATTGTAC
* *
46815603 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
46815631 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
46815660 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
46815679 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Done.