Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 160 of 770
Found at i:47234734 original size:103 final size:103
Alignment explanation
Indices: 47234537--47234726 Score: 317
Period size: 103 Copynumber: 1.8 Consensus size: 103
47234527 CACCGATGCC
* *
47234537 ATGTCCCAAACATAGTCTTACGCTGGCACACATATCATCGCCAATGCCATGTCCCAGACATGGTC
1 ATGTCCCAAACATAGTCTTACACAGGCACACATATCATCGCCAATGCCATGTCCCAGACATGGTC
47234602 TTACACAGGCACACATATCATCACCGATGCTATGTGCT
66 TTACACAGGCACACATATCATCACCGATGCTATGTGCT
* * *
47234640 ATGTCCCAAACATGGTCTTACACAGGCACACATATCATCGCTAATGCCATGTCCTAGACATGGTC
1 ATGTCCCAAACATAGTCTTACACAGGCACACATATCATCGCCAATGCCATGTCCCAGACATGGTC
* *
47234705 TTACACTGGCACATATATCATC
66 TTACACAGGCACACATATCATC
47234727 GCTGATGCCA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 80 1.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (103 bp):
ATGTCCCAAACATAGTCTTACACAGGCACACATATCATCGCCAATGCCATGTCCCAGACATGGTC
TTACACAGGCACACATATCATCACCGATGCTATGTGCT
Found at i:47236254 original size:93 final size:93
Alignment explanation
Indices: 47236095--47236265 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
47236085 GGATGGTTGA
* * *
47236095 GCATCCAAACTCGTTGAGTTGAGTCGGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
47236160 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
47236188 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
47236253 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
47236266 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47236314 original size:46 final size:46
Alignment explanation
Indices: 47236102--47236316 Score: 276
Period size: 46 Copynumber: 4.7 Consensus size: 46
47236092 TGAGCATCCA
* * * *
47236102 AACTCGTTGAGTTGAGTCGGAGTTCACCTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
* * *
47236148 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CCG
47236195 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
*
47236241 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
*
47236287 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
47236317 GGGGCGGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 2 0.01
46 102 0.68
47 28 0.19
48 4 0.03
50 4 0.03
51 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
Found at i:47240413 original size:51 final size:51
Alignment explanation
Indices: 47240272--47240410 Score: 219
Period size: 51 Copynumber: 2.8 Consensus size: 51
47240262 TAGCCAAAGC
* *
47240272 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGGGATCCAAGT
*
47240323 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGGGA-CCAA-T
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGGGATCCAAGT
* *
47240372 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
47240411 CATGACCTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
49 37 0.45
50 3 0.04
51 42 0.51
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (51 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGGGATCCAAGT
Found at i:47243729 original size:30 final size:30
Alignment explanation
Indices: 47243693--47243823 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
47243683 GACAAGATTG
* * * * *
47243693 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
47243723 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
47243751 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
47243781 GCACTAAGTGTGAGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
47243810 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47243824 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 45 0.50
31 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:47243784 original size:58 final size:58
Alignment explanation
Indices: 47243693--47243823 Score: 165
Period size: 58 Copynumber: 2.2 Consensus size: 58
47243683 GACAAGATTG
* * * * * * *
47243693 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGAGAG-CTGAAATATATA
*
47243751 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGAGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGAGAGCTG-AAATATATA
47243810 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47243824 GATTCACTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 40 0.63
59 21 0.33
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGAGAGCTGAAATATATA
Found at i:47245755 original size:2 final size:2
Alignment explanation
Indices: 47245748--47245776 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
47245738 GAATATTGAG
47245748 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47245777 TGTTATAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:47246412 original size:40 final size:40
Alignment explanation
Indices: 47246357--47246541 Score: 293
Period size: 40 Copynumber: 4.6 Consensus size: 40
47246347 CGGATGATAA
*
47246357 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGT-CTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTATA-T
*
47246397 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47246437 CCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47246477 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47246517 CCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47246542 AGCAAGTAGT
Statistics
Matches: 138, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47246556 original size:80 final size:80
Alignment explanation
Indices: 47246353--47246573 Score: 297
Period size: 80 Copynumber: 2.8 Consensus size: 80
47246343 TATTCGGATG
*
47246353 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GTCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGT-TATA-TCCGGGCTAAGTCCCGAAGG
*
47246416 CATTTGTGCTAGTTACT
64 CATTTGTGCGAGTTACT
* * * *
47246433 ATATCCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGTTATATCCGGGCTAAGTCCCGAAGGC
47246497 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * * *
47246513 ATAACCAGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAG
47246574 ATGCTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.13
80 106 0.85
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:47246841 original size:22 final size:21
Alignment explanation
Indices: 47246800--47246843 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
47246790 GAATGTGCAT
47246800 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
47246822 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
47246844 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:47248518 original size:24 final size:24
Alignment explanation
Indices: 47248469--47248577 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
47248459 ACCAAACATT
* **
47248469 GCACACATAGTGCT-TATTATGTTC
1 GCACACATAGTGCTATAGTA-AATC
*
47248493 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTAAATC
*
47248517 GCACACATAGTGCTATGGTAAATC
1 GCACACATAGTGCTATAGTAAATC
47248541 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCTATAGTAAATC
47248565 GCACACATAGTGC
1 GCACACATAGTGC
47248578 ATTTGAGATT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
24 73 0.95
25 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCTATAGTAAATC
Found at i:47253673 original size:29 final size:29
Alignment explanation
Indices: 47253631--47253688 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
47253621 ATGTAGTAGT
*
47253631 TAGTTCGGGTCAATTTCGAACTTAAAGAC
1 TAGTTCGGGTCAATTCCGAACTTAAAGAC
47253660 TAGTTCGGGTCAATTCCGAACTTAAAGAC
1 TAGTTCGGGTCAATTCCGAACTTAAAGAC
47253689 CTTTTTTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (29 bp):
TAGTTCGGGTCAATTCCGAACTTAAAGAC
Found at i:47257208 original size:45 final size:45
Alignment explanation
Indices: 47257144--47257304 Score: 195
Period size: 45 Copynumber: 3.6 Consensus size: 45
47257134 TATCGTAAAG
* *
47257144 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATGATGCCAGTGAAA
* * *
47257189 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATG-CTGATGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATGATGCCAG-TGAAA
* * **
47257234 TACTATTCGGGCCTTCGAGTCTAGCAGGCTATCATGCTGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATGATGCCAGTGAAA
47257279 TGA-TA-TCGGG-CTTCGAGCCTAGCAGG
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGG
47257305 TTAAATGCCG
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
43 15 0.15
44 7 0.07
45 79 0.77
46 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATGATGCCAGTGAAA
Found at i:47264962 original size:45 final size:45
Alignment explanation
Indices: 47264898--47265072 Score: 241
Period size: 45 Copynumber: 4.0 Consensus size: 45
47264888 TATCGTAAAG
* *
47264898 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
47264943 TACTATTCTGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
47264988 TACTATTCGGGCCTTCGAGCCTAGCAGACTATAATGCTGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
47265033 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCTA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
47265073 TTTGATAAAA
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
42 10 0.08
43 18 0.15
44 5 0.04
45 85 0.71
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:47267355 original size:43 final size:42
Alignment explanation
Indices: 47267233--47267355 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 42
47267223 TACCATACCA
* *
47267233 ATGCCATATCCCAGATATGGTCTTACATGT-GATCTCATATCG
1 ATGCCA-ATCCCAGATATGGTCTTACACGTAAATCTCATATCG
* * *
47267275 ATGCCAATAGCCTAGCTATGGTCTTACAC--AAGGTCTCATATCG
1 ATGCCAAT--CCCAGATATGGTCTTACACGTAA-ATCTCATATCG
*
47267318 ATGCCACATCCCAAATATGGTCTTACACGTAAATCTCA
1 ATGCCA-ATCCCAGATATGGTCTTACACGTAAATCTCA
47267356 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.03
42 22 0.34
43 37 0.57
44 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCAATCCCAGATATGGTCTTACACGTAAATCTCATATCG
Found at i:47272620 original size:100 final size:100
Alignment explanation
Indices: 47272506--47272984 Score: 724
Period size: 100 Copynumber: 4.9 Consensus size: 100
47272496 GAAGCTATCT
* *
47272506 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
* *
47272571 TGCACTTAGTACTACACACGTGATCATAGTTTCCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* *
47272606 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
47272671 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* * *
47272706 GGTATGCATAGTAGCCTGCACTTATTACTACACATGCG-------A--CGGTACACGTAGTAGCA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
* *
47272762 TGCACTTAGTACTACACATGTGATCACAGTTTTTG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* * * *
47272797 GGTATGCATAGTAGCCTACACTTAGTATTGCACATGCGACCAATAATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
47272862 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* * * *
47272897 GGTACGCGTAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
47272962 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
47272985 CCTCACAATA
Statistics
Matches: 346, Mismatches: 24, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
91 81 0.23
93 1 0.00
98 1 0.00
100 263 0.76
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:47272844 original size:191 final size:191
Alignment explanation
Indices: 47272555--47272936 Score: 629
Period size: 191 Copynumber: 2.0 Consensus size: 191
47272545 CCAATAATCT
* *
47272555 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTCCGGGTACGCATAGTAG
1 GGTACACGTAGTAGCATGCACTTAGTACTACACACGTGATCACAGTTTCCGGGTACGCATAGTAG
* *
47272620 CCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCCTGCACTTAGTACTA
66 CCTACACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCTGCACTTAGTACTA
* * *
47272685 CACACGTGATCACAGTTTTCGGGTATGCATAGTAGCCTGCACTTATTACTACACATGCGAC
131 CACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGAC
* ** *
47272746 GGTACACGTAGTAGCATGCACTTAGTACTACACATGTGATCACAGTTTTTGGGTATGCATAGTAG
1 GGTACACGTAGTAGCATGCACTTAGTACTACACACGTGATCACAGTTTCCGGGTACGCATAGTAG
* * *
47272811 CCTACACTTAGTATTGCACATGCGACCAATAATCCGGTACACGTAGTAGCCTGCACTTAGTACTA
66 CCTACACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCTGCACTTAGTACTA
*
47272876 CACACGTGATCACAGTTTTCGGGTACGCGTAGTAGCCTACACTTAGTACTACACATGCGAC
131 CACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGAC
47272937 CAATTATCCG
Statistics
Matches: 176, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
191 176 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (191 bp):
GGTACACGTAGTAGCATGCACTTAGTACTACACACGTGATCACAGTTTCCGGGTACGCATAGTAG
CCTACACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCTGCACTTAGTACTA
CACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGAC
Found at i:47273773 original size:30 final size:28
Alignment explanation
Indices: 47273726--47273792 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 28
47273716 AGATAACAAG
47273726 AAAA-CCAAATAAAGAAATCCAAG-ATAGA
1 AAAACCCAAATAAAGAAAT-CAAGAATA-A
*
47273754 AAAACCCAGAATAATGAAATCAAGAATAA
1 AAAACCCA-AATAAAGAAATCAAGAATAA
47273783 AGAAACCCAA
1 A-AAACCCAA
47273793 GATACGATAC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 4 0.12
29 10 0.29
30 20 0.59
ACGTcount: A:0.63, C:0.16, G:0.10, T:0.10
Consensus pattern (28 bp):
AAAACCCAAATAAAGAAATCAAGAATAA
Found at i:47276853 original size:49 final size:49
Alignment explanation
Indices: 47276779--47277066 Score: 342
Period size: 49 Copynumber: 5.8 Consensus size: 49
47276769 TAGCTGAAGC
* *
47276779 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
47276828 AATCTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGATCATAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCA-A-T
* * * *
47276879 TTTCGGGTACGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
47276928 AATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * *
47276979 TTTCAGGTACGCATTGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
47277028 TATCCGGTACACTTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
47277067 CATGACCTCA
Statistics
Matches: 196, Mismatches: 39, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
49 114 0.58
50 4 0.02
51 78 0.40
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:47276901 original size:100 final size:100
Alignment explanation
Indices: 47276784--47277067 Score: 478
Period size: 100 Copynumber: 2.8 Consensus size: 100
47276774 GAAGCTATCT
* * *
47276784 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
* *
47276849 TGCACTTAGTACTACACACGTGATCATAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
*
47276884 GGTACGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
47276949 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
* * * *
47276984 GGTACGCATTGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACTTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
47277049 TGCACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
47277068 ATGACCTCAC
Statistics
Matches: 173, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 173 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACATAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:47281483 original size:48 final size:48
Alignment explanation
Indices: 47281387--47281659 Score: 199
Period size: 49 Copynumber: 5.7 Consensus size: 48
47281377 ATGGATGTGT
* **
47281387 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCA-CATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCAAGATGAGA
* * *
47281433 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTAAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGATGAGA
** * * *
47281481 GCTAGTGTAAGA-CATGTCTAAGACAT-GCATCAGCCTCGAGAT-ATGCAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGATGA-G--A
* * *
47281529 GCTAGTGTAAGACC-TATCTGGGACATGGCATTGACATCGATAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-A-AGATGAGA
* * * * *
47281578 GCCAGTGTAAAACC-TGCCTGGGACATGGCATCGGTC-TCGATATATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATC-A-AGATGAGA
*
47281627 G-TCAGTGTAAGACC-TGTCTGGTACATGGCATCG
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
47281660 ACTTAAATGT
Statistics
Matches: 180, Mismatches: 34, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 23 0.13
47 26 0.14
48 47 0.26
49 76 0.42
50 1 0.01
51 5 0.03
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGATGAGA
Found at i:47281634 original size:98 final size:95
Alignment explanation
Indices: 47281390--47281661 Score: 262
Period size: 98 Copynumber: 2.8 Consensus size: 95
47281380 GATGTGTGCT
* * * * * * *
47281390 AGTGTAAGACATGTCTAGGACATGCATCGGCCAC-A-TTATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAAACATGCCTAAGACATGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGACC-TGTCT
** * *
47281453 GGGACATGGCATCGGTATTAAGACGAGAGCT
65 GGGACATGGCATCGACATGAAGACGAGAGCC
* * * *
47281484 AGTGTAAGACATGTCTAAGACATGCATCAGCCTCGAGATATGCAAGCTAGTGTAAGACCTATCTG
1 AGTGTAAAACATGCCTAAGACATGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTG
* *
47281549 GGACATGGCATTGACATCGATAGATGAGAGCC
66 GGACATGGCATCGACAT-GA-AGACGAGAGCC
* ** * * *
47281581 AGTGTAAAACCTGCCTGGGACATGGCATCGGTCTCGATATATGAAAG-TCAGTGTAAGACCTGTC
1 AGTGTAAAACATGCCTAAGACAT-GCATCAGCCTCGAGATATGAAAGCT-AGTGTAAGACCTGTC
*
47281645 TGGTACATGGCATCGAC
64 TGGGACATGGCATCGAC
47281662 TTAAATGTGT
Statistics
Matches: 147, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
94 31 0.21
95 20 0.14
96 20 0.14
97 28 0.19
98 48 0.33
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (95 bp):
AGTGTAAAACATGCCTAAGACATGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTG
GGACATGGCATCGACATGAAGACGAGAGCC
Found at i:47287930 original size:55 final size:55
Alignment explanation
Indices: 47287830--47287935 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
47287820 TGACTTTTAA
* * *
47287830 ACATGGCCATGGCACACACCCATGTGGACTGCCCGTGTTCAATACTGACTTTGGG
1 ACATGGCCATGGCACACACCCATGTGGACTACCCGTGTCCAATACTAACTTTGGG
* * * * * *
47287885 ACATGGCTATGGGACACGCCCGTGTGGCCTACCCGTGTCCTATACTAACTT
1 ACATGGCCATGGCACACACCCATGTGGACTACCCGTGTCCAATACTAACTT
47287936 ATAAATTAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.25
Consensus pattern (55 bp):
ACATGGCCATGGCACACACCCATGTGGACTACCCGTGTCCAATACTAACTTTGGG
Found at i:47291491 original size:16 final size:16
Alignment explanation
Indices: 47291448--47291493 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
47291438 AGTGGGTGTT
47291448 TTATAAGTTAAAATAG
1 TTATAAGTTAAAATAG
*
47291464 TTAATAAATTAATAATA-
1 TT-ATAAGTTAA-AATAG
47291481 TTATAAGTTAAAA
1 TTATAAGTTAAAA
47291494 ACACAGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 2 0.08
16 10 0.38
17 10 0.38
18 4 0.15
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (16 bp):
TTATAAGTTAAAATAG
Found at i:47292556 original size:28 final size:28
Alignment explanation
Indices: 47292497--47292561 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 28
47292487 TATACAGTAT
* * *
47292497 CAGT-ACAGTTTGGGCCTTAGCCCTATA
1 CAGTAACAGTGTGGGCCTAAGCCCAATA
*
47292524 CAGTAACAGTGTGGGCCTAAGCTCAATA
1 CAGTAACAGTGTGGGCCTAAGCCCAATA
* *
47292552 TAGTATCAGT
1 CAGTAACAGT
47292562 ACAGTGTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTAAGCCCAATA
Found at i:47292749 original size:27 final size:27
Alignment explanation
Indices: 47292719--47292771 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
47292709 CTGCCAAAAA
47292719 CAGTAAATGTGGCAAAGCCACCAGTAT
1 CAGTAAATGTGGCAAAGCCACCAGTAT
* *
47292746 CAGTAATTGTGGCATAGCCACCAGTA
1 CAGTAAATGTGGCAAAGCCACCAGTA
47292772 CAATACTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGTAAATGTGGCAAAGCCACCAGTAT
Found at i:47292816 original size:30 final size:30
Alignment explanation
Indices: 47292780--47292839 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
47292770 TACAATACTT
*
47292780 CCTCCATATCAAAATTCCAACCCCATGCAG
1 CCTCCATATCAAAATCCCAACCCCATGCAG
47292810 CCTCCATATCAAAATCCCAACCCCATGCAG
1 CCTCCATATCAAAATCCCAACCCCATGCAG
47292840 TATGTCACGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.42, G:0.07, T:0.18
Consensus pattern (30 bp):
CCTCCATATCAAAATCCCAACCCCATGCAG
Found at i:47295770 original size:2 final size:2
Alignment explanation
Indices: 47295763--47295796 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
47295753 TTAATTTACC
47295763 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47295797 CAAGATGGGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47314560 original size:13 final size:13
Alignment explanation
Indices: 47314542--47314567 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47314532 TTTTATAATG
47314542 TATTTTGAATTTA
1 TATTTTGAATTTA
47314555 TATTTTGAATTTA
1 TATTTTGAATTTA
47314568 ACTATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTGAATTTA
Found at i:47314989 original size:45 final size:43
Alignment explanation
Indices: 47314932--47315051 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 43
47314922 AGTACATTTG
*
47314932 TGCTCCCGTTAGCACTATGGTGCTCATGATAGCATAGCACATTCA
1 TGCTCCTGTTAGCACTA-GGTGCTC-TGATAGCATAGCACATTCA
* * **
47314977 TGCTCCTGTTAGCACTACAGTGCTC--CT-G-ATAGCACATTTT
1 TGCTCCTGTTAGCACTA-GGTGCTCTGATAGCATAGCACATTCA
*
47315017 TGCTCTTGTTAGCACTAGGTGCTCTTGATAGCATA
1 TGCTCCTGTTAGCACTAGGTGCTC-TGATAGCATA
47315052 TTTATGCTCC
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
39 6 0.10
40 26 0.43
41 1 0.02
42 2 0.03
43 1 0.02
44 3 0.05
45 22 0.36
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (43 bp):
TGCTCCTGTTAGCACTAGGTGCTCTGATAGCATAGCACATTCA
Found at i:47314991 original size:20 final size:20
Alignment explanation
Indices: 47314966--47315031 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
47314956 CATGATAGCA
47314966 TAGCACATTCATGCTCCTGT
1 TAGCACATTCATGCTCCTGT
* *
47314986 TAGCAC-TACAGTGCTCCTGA
1 TAGCACATTCA-TGCTCCTGT
** *
47315006 TAGCACATTTTTGCTCTTGT
1 TAGCACATTCATGCTCCTGT
47315026 TAGCAC
1 TAGCAC
47315032 TAGGTGCTCT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 3 0.08
20 33 0.89
21 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (20 bp):
TAGCACATTCATGCTCCTGT
Found at i:47316403 original size:18 final size:18
Alignment explanation
Indices: 47316367--47316405 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
47316357 TTTGTATGTG
**
47316367 TTTTTAAAATTTTTTATT
1 TTTTTAAAATTTTAAATT
47316385 TTTTTAAAATTTTAAATT
1 TTTTTAAAATTTTAAATT
47316403 TTT
1 TTT
47316406 GTTTTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTAAAATTTTAAATT
Found at i:47321719 original size:34 final size:34
Alignment explanation
Indices: 47321626--47321699 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
47321616 AGTGCCACGA
* * *
47321626 TTCACAACTCAGTATGGAAACACCATACCTACGT
1 TTCACAGCTCGGTATGGAAATACCATACCTACGT
47321660 TTCACAGCTCGGTATGGAAATACCATACCTACGT
1 TTCACAGCTCGGTATGGAAATACCATACCTACGT
47321694 TTCACA
1 TTCACA
47321700 CTTTTTCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (34 bp):
TTCACAGCTCGGTATGGAAATACCATACCTACGT
Found at i:47321785 original size:27 final size:27
Alignment explanation
Indices: 47321755--47321817 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
47321745 ATCACTGAAC
* * *
47321755 CTTTGCTATGTTTGGCACACTATATCA
1 CTTTGCCATGATTGACACACTATATCA
*
47321782 CTTTGCCATGATTGACACACTTTATCA
1 CTTTGCCATGATTGACACACTATATCA
47321809 CTTTGCCAT
1 CTTTGCCAT
47321818 AGTTCAACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (27 bp):
CTTTGCCATGATTGACACACTATATCA
Found at i:47321950 original size:31 final size:31
Alignment explanation
Indices: 47321907--47322083 Score: 248
Period size: 31 Copynumber: 5.7 Consensus size: 31
47321897 TTTGTCACTT
* *
47321907 GTAGCCGAAGCTACCACTATTCACTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
*
47321938 GTAGCTGGAGCTACCACTTTTCACTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
*
47321969 GTAGCTGAAGCTACTACTTTTCACTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
** * *
47322000 GTAGCCAAAGCTA-AACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
* *
47322030 ATAGCTGAAGCTACCACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
*
47322061 GTAGCCGAAGCTACCACTTTTCA
1 GTAGCTGAAGCTACCACTTTTCA
47322084 TATTGTACAC
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
30 25 0.19
31 105 0.81
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTAATCAG
Found at i:47322035 original size:92 final size:93
Alignment explanation
Indices: 47321907--47322083 Score: 266
Period size: 92 Copynumber: 1.9 Consensus size: 93
47321897 TTTGTCACTT
* * * *
47321907 GTAGCCGAAGCTACCACTATTCACTAATCAGGTAGCTGGAGCTACCACTTTTCACTAATCAGGTA
1 GTAGCCAAAGCTACAACTATTCACTAATCAGATAGCTGAAGCTACCACTTTTCACTAATCAGGTA
* *
47321972 GCTGAAGCTACTACTTTTCACTAATCAG
66 GCCGAAGCTACCACTTTTCACTAATCAG
* * *
47322000 GTAGCCAAAGCTA-AACTTTTCACTGATCAGATAGCTGAAGCTACCACTTTTCACTGATCAGGTA
1 GTAGCCAAAGCTACAACTATTCACTAATCAGATAGCTGAAGCTACCACTTTTCACTAATCAGGTA
47322064 GCCGAAGCTACCACTTTTCA
66 GCCGAAGCTACCACTTTTCA
47322084 TATTGTACAC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
92 63 0.84
93 12 0.16
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (93 bp):
GTAGCCAAAGCTACAACTATTCACTAATCAGATAGCTGAAGCTACCACTTTTCACTAATCAGGTA
GCCGAAGCTACCACTTTTCACTAATCAG
Found at i:47322049 original size:61 final size:62
Alignment explanation
Indices: 47321908--47322083 Score: 255
Period size: 61 Copynumber: 2.9 Consensus size: 62
47321898 TTGTCACTTG
* * * * *
47321908 TAGCCGAAGCTACCACTATTCACTAATCAGGTAGCTGGAGCTACCACTTTTCACTAATCAGG
1 TAGCTGAAGCTACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAGA
* * * *
47321970 TAGCTGAAGCTACTACTTTTCACTAATCAGGTAGCCAAAGCTA-AACTTTTCACTGATCAGA
1 TAGCTGAAGCTACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAGA
*
47322031 TAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCA
1 TAGCTGAAGCTACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCA
47322084 TATTGTACAC
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 55 0.55
62 45 0.45
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (62 bp):
TAGCTGAAGCTACCACTTTTCACTAATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAGA
Found at i:47322161 original size:33 final size:33
Alignment explanation
Indices: 47322077--47322189 Score: 124
Period size: 33 Copynumber: 3.5 Consensus size: 33
47322067 GAAGCTACCA
* ** *
47322077 CTTTTCATA-TTGTACACACAAGGCATACATTTT
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
47322110 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
47322142 CTATTT-AAGTTGTACACACACAGTGTACATTTC
1 CT-TTTCAAGTTGTACACACAAAGTGTACATTTC
*
47322175 CTTTTCCAGTTGTAC
1 CTTTTCAAGTTGTAC
47322190 CTTTTAGGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
32 27 0.40
33 41 0.60
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:47323889 original size:11 final size:11
Alignment explanation
Indices: 47323873--47323925 Score: 61
Period size: 11 Copynumber: 4.7 Consensus size: 11
47323863 TATACTAAAT
47323873 AAATAATAATA
1 AAATAATAATA
47323884 AAATAATAATA
1 AAATAATAATA
** *
47323895 AATATCTTATTA
1 AA-ATAATAATA
*
47323907 AAATATTAATA
1 AAATAATAATA
47323918 AAATAATA
1 AAATAATA
47323926 TTTATCTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
11 27 0.77
12 8 0.23
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATAATAATA
Found at i:47323932 original size:31 final size:33
Alignment explanation
Indices: 47323873--47323938 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
47323863 TATACTAAAT
*
47323873 AAATAATAATAAAATAATAATAAATATCTTATTA
1 AAATAATAATAAAATAATAAT-AATATCTAATTA
* *
47323907 AAATATTAATAAAATAAT-AT-TTATCTAATTA
1 AAATAATAATAAAATAATAATAATATCTAATTA
47323938 A
1 A
47323939 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 10 0.34
33 2 0.07
34 17 0.59
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (33 bp):
AAATAATAATAAAATAATAATAATATCTAATTA
Found at i:47328160 original size:26 final size:24
Alignment explanation
Indices: 47328121--47328179 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 24
47328111 TTATTTTATT
* * *
47328121 AATAAAAAAATTTAAAAATATAATA
1 AATAAATATATTTAAAAACATAA-A
47328146 AATCAAATATATTTAAAAACATAAA
1 AAT-AAATATATTTAAAAACATAAA
47328171 AATAAATAT
1 AATAAATAT
47328180 TAAAACAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.20
25 7 0.23
26 17 0.57
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (24 bp):
AATAAATATATTTAAAAACATAAA
Found at i:47328191 original size:22 final size:22
Alignment explanation
Indices: 47328150--47328208 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
47328140 ATAATAAATC
* *
47328150 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
47328170 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
47328192 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
47328209 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:47332486 original size:29 final size:27
Alignment explanation
Indices: 47332388--47332500 Score: 91
Period size: 29 Copynumber: 4.0 Consensus size: 27
47332378 GTGAGCATGA
* *
47332388 ATATGAATATGACTGGGCCTAACGGGC
1 ATATGAATATGATTGGGCCTAATGGGC
* *
47332415 TATATAAATGTGATTTGGGCCTAATGGGCC
1 -ATATGAATATGA-TTGGGCCTAATGGG-C
** **
47332445 ATATTTAGGTGATTTGGGCCTAATGGGTC
1 ATATGAATATGA-TTGGGCCTAATGGG-C
* *
47332474 ATATGAATATGATTGGGCTTAGTGGGC
1 ATATGAATATGATTGGGCCTAATGGGC
47332501 CAGATACAGG
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
27 1 0.01
28 22 0.32
29 45 0.65
30 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (27 bp):
ATATGAATATGATTGGGCCTAATGGGC
Found at i:47338643 original size:21 final size:20
Alignment explanation
Indices: 47338600--47338645 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
47338590 AGAACAAGAG
**
47338600 AAGAAAAATAAAAAAAATGA
1 AAGAAAAATAAAAAAAACAA
*
47338620 AAGAAAAATAAAAAACGACAA
1 AAGAAAAATAAAAAA-AACAA
47338641 AAGAA
1 AAGAA
47338646 GGAGAATAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.78, C:0.04, G:0.11, T:0.07
Consensus pattern (20 bp):
AAGAAAAATAAAAAAAACAA
Found at i:47344423 original size:18 final size:18
Alignment explanation
Indices: 47344400--47344442 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
47344390 TCTTGTCACT
*
47344400 ATATATTTTGAAAT-TAAA
1 ATATATATT-AAATGTAAA
47344418 ATATATATTAAATGTAAA
1 ATATATATTAAATGTAAA
*
47344436 AAATATA
1 ATATATA
47344443 ATTTTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (18 bp):
ATATATATTAAATGTAAA
Found at i:47345887 original size:88 final size:88
Alignment explanation
Indices: 47345731--47345908 Score: 284
Period size: 88 Copynumber: 2.0 Consensus size: 88
47345721 TAAAAAGGAT
* * *
47345731 CTAGTAGCTTAGTTAAATAGTTAGCATACGATTGGAATGTCAATAGGGAACTTCTGTTACTAGCA
1 CTAGTAGCTTAGTTAAAGAGTTAACATACGATTGGAATGCCAATAGGGAACTTCTGTTACTAGCA
*
47345796 CTATAGTACTTCTATTATTGGTA
66 CTATAGTACTTCTATTATTAGTA
* * * *
47345819 CTAGTAGCTTAGTTAAAGAGTTAACATACGATTGGCATGCCAATAGGGGACTTCTGTTATTAGTA
1 CTAGTAGCTTAGTTAAAGAGTTAACATACGATTGGAATGCCAATAGGGAACTTCTGTTACTAGCA
47345884 CTATAGTACTTCTATTATTAGTA
66 CTATAGTACTTCTATTATTAGTA
47345907 CT
1 CT
47345909 TTGGTACATT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (88 bp):
CTAGTAGCTTAGTTAAAGAGTTAACATACGATTGGAATGCCAATAGGGAACTTCTGTTACTAGCA
CTATAGTACTTCTATTATTAGTA
Found at i:47348029 original size:14 final size:14
Alignment explanation
Indices: 47348010--47348038 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47348000 AGGAGTCTGG
47348010 GGAGTATACTGTTC
1 GGAGTATACTGTTC
47348024 GGAGTATACTGTTC
1 GGAGTATACTGTTC
47348038 G
1 G
47348039 TAGTGGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (14 bp):
GGAGTATACTGTTC
Found at i:47351605 original size:44 final size:44
Alignment explanation
Indices: 47351557--47351697 Score: 137
Period size: 44 Copynumber: 3.2 Consensus size: 44
47351547 GCCTGTTTCC
47351557 CTACTGCTTAGGGGGATAAGGCTCACCATCTTCGATCCGCTCCA
1 CTACTGCTTAGGGGGATAAGGCTCACCATCTTCGATCCGCTCCA
* * * ** * *
47351601 CTACTGCTTAGGGAGATGA-GATCTATAATCTTC-AGCCTGTTTCC-
1 CTACTGCTTAGGGGGATAAGGCTC-ACCATCTTCGATCC-G-CTCCA
* * *
47351645 CTACTGCTTA-GGGGTTAAGGCTCACCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGGATAAGGCTCACCATCTTCGATCCGCTCCA
47351688 CTACTGCTTA
1 CTACTGCTTA
47351698 AGGAGTTGAG
Statistics
Matches: 74, Mismatches: 17, Indels: 13
0.71 0.16 0.12
Matches are distributed among these distances:
42 3 0.04
43 28 0.38
44 40 0.54
45 3 0.04
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.30
Consensus pattern (44 bp):
CTACTGCTTAGGGGGATAAGGCTCACCATCTTCGATCCGCTCCA
Found at i:47351633 original size:88 final size:87
Alignment explanation
Indices: 47351522--47352455 Score: 1203
Period size: 88 Copynumber: 10.7 Consensus size: 87
47351512 CTGCAACTTG
* *
47351522 AGGGAGATAAGA-CTTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCAT
1 AGGGAGATAAGATC-TGTAAT-TTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGT
*
47351586 CTTCGATCCGCTCCACTACTGCTT
64 CTTCGATCTGCTCCACTACTGCTT
* *
47351610 AGGGAGATGAGATCTATAATCTTCAGCCTGTTTCCCTACTGCTTA-GGGGTTAAGGCTCACCGTC
1 AGGGAGATAAGATCTGTAAT-TTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
47351674 TTCGATCTGCTCCACTACTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* * * * * *
47351697 AAGGAGTTGAGATCTGTAATTTCCAGCCTGTTTCCTTACTGCTTAGGGGGTTAAGGCTCACTGTA
1 AGGGAGATAAGATCTGTAATTT-CAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
*
47351762 TTCGATTTGCTCCACTACTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* * * * *
47351785 AGGGATATAAGATCTGTAATTTCTAACCAGTTTCCCTA-TGCTTAGGAGGTTAAGGCTCACCATC
1 AGGGAGATAAGATCTGTAATTTC-AGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
*** *
47351849 TTCGATCAATTCCAC-ATTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* * * * *
47351871 AGGGAGATAAGATCTGAAATTTTCGGCCTGTTTCTCTACTGCTTAAGGGGTTAAGGCTCACCGTA
1 AGGGAGATAAGATCTGTAA-TTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
* *
47351936 TTTGATCTGCTCCAGTACTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* * *
47351959 AGGGAGATAAGATTTGTAATTTCCAGCTTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACTGTC
1 AGGGAGATAAGATCTGTAATTT-CAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
* *
47352024 CTCGATCCGCTCCACTACTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* *
47352047 AGGGAGATAAGATCTGTAATTTTCAGCTTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
1 AGGGAGATAAGATCTGTAA-TTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
* *
47352112 TTCAATCTGCTCCACCACTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* * * *
47352135 AGGGAGATAAGATCTGTAATTTCCAACCTCTTTCCCTACTGCTTAGGGGATTAAGGCTCACCATC
1 AGGGAGATAAGATCTGTAATTT-CAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
*
47352200 TTCGATCTGTTCCAC-ACTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* * * * * *
47352222 AGGGGGATAAGATCTGTAATTTCTAGCCTGTTTTCCTCCCGCTTAGGGGGTTAAAGCTCACCATC
1 AGGGAGATAAGATCTGTAATTTC-AGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
*
47352287 TTCGATCTGCCCCACTACTGCTT
65 TTCGATCTGCTCCACTACTGCTT
* * * * * *
47352310 AGGGAGATAATATATGTAATTCCAGCCTATTTTCCTACTGCTTAAGGGGTTAAGGCTCACCGTCT
1 AGGGAGATAAGATCTGTAATTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCT
47352375 TCGATCTGCTCCACTACTGCTT
66 TCGATCTGCTCCACTACTGCTT
* * * *
47352397 AGGGAAATAAAATCTGTAATTTTCAGCCTGTTTCCCTACTTCTTAGAGGGTTAAGGCTC
1 AGGGAGATAAGATCTGTAA-TTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTC
47352456 GTGAATTCAC
Statistics
Matches: 732, Mismatches: 101, Indels: 26
0.85 0.12 0.03
Matches are distributed among these distances:
86 36 0.05
87 301 0.41
88 391 0.53
89 4 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (87 bp):
AGGGAGATAAGATCTGTAATTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCT
TCGATCTGCTCCACTACTGCTT
Found at i:47351754 original size:175 final size:173
Alignment explanation
Indices: 47351522--47352455 Score: 1203
Period size: 175 Copynumber: 5.3 Consensus size: 173
47351512 CTGCAACTTG
* * *
47351522 AGGGAGATAAGA-CTTGTAATCTTCAGCCTGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCAT
1 AGGGAGATAAGATC-TGTAATTTTCAGCCTGTTT-CCTACTGCTTAGGGGGTTAAGGCTCACCGT
* * *
47351586 CTTCGATCCGCTCCACTACTGCTTAGGGAGATGAGATCTATAATCTTCAGCCTGTTTCCCTACTG
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAGCCTGTTTCCCTACTG
47351651 CTTAGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
128 CTTAGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
* * * * * *
47351697 AAGGAGTTGAGATCTGTAATTTCCAGCCTGTTTCCTTACTGCTTAGGGGGTTAAGGCTCACTGTA
1 AGGGAGATAAGATCTGTAATTTTCAGCCTGTTTCC-TACTGCTTAGGGGGTTAAGGCTCACCGTC
* * * *
47351762 TTCGATTTGCTCCACTACTGCTTAGGGATATAAGATCTGTAATTTCTAACCAGTTTCCCTA-TGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTC-AGCCTGTTTCCCTACTGC
* *** *
47351826 TTAGGAGGTTAAGGCTCACCATCTTCGATCAATTCCAC-ATTGCTT
129 TTAGG-GGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
* * * *
47351871 AGGGAGATAAGATCTGAAATTTTCGGCCTGTTTCTCTACTGCTTAAGGGGTTAAGGCTCACCGTA
1 AGGGAGATAAGATCTGTAATTTTCAGCCTGTTTC-CTACTGCTTAGGGGGTTAAGGCTCACCGTC
* * * *
47351936 TTTGATCTGCTCCAGTACTGCTTAGGGAGATAAGATTTGTAATTTCCAGCTTGTTTCCCTACTGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTTCCCTACTGC
* * *
47352001 TTAGGGGGTTAAGGCTCACTGTCCTCGATCCGCTCCACTACTGCTT
129 TTA-GGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
*
47352047 AGGGAGATAAGATCTGTAATTTTCAGCTTGTTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
1 AGGGAGATAAGATCTGTAATTTTCAGCCTG-TTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTC
* * * *
47352112 TTCAATCTGCTCCACCACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTCTTTCCCTACTGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAGCCTGTTTCCCTACTGC
* *
47352177 TTAGGGGATTAAGGCTCACCATCTTCGATCTGTTCCAC-ACTGCTT
129 TTAGGGG-TTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
* * * * *
47352222 AGGGGGATAAGATCTGTAA-TTTCTAGCCTGTTTTCCTCCCGCTTAGGGGGTTAAAGCTCACCAT
1 AGGGAGATAAGATCTGTAATTTTC-AGCCTG-TTTCCTACTGCTTAGGGGGTTAAGGCTCACCGT
* * * * * *
47352286 CTTCGATCTGCCCCACTACTGCTTAGGGAGATAATATATGTAATTCCAGCCTATTTTCCTACTGC
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAGCCTGTTTCCCTACTGC
47352351 TTAAGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
129 TT-AGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
* * * *
47352397 AGGGAAATAAAATCTGTAATTTTCAGCCTGTTTCCCTACTTCTTAGAGGGTTAAGGCTC
1 AGGGAGATAAGATCTGTAATTTTCAGCCTGTTT-CCTACTGCTTAGGGGGTTAAGGCTC
47352456 GTGAATTCAC
Statistics
Matches: 656, Mismatches: 87, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
174 178 0.27
175 321 0.49
176 153 0.23
177 4 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (173 bp):
AGGGAGATAAGATCTGTAATTTTCAGCCTGTTTCCTACTGCTTAGGGGGTTAAGGCTCACCGTCT
TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAGCCTGTTTCCCTACTGCTT
AGGGGTTAAGGCTCACCGTCTTCGATCTGCTCCACTACTGCTT
Found at i:47351999 original size:44 final size:44
Alignment explanation
Indices: 47351951--47352182 Score: 127
Period size: 44 Copynumber: 5.3 Consensus size: 44
47351941 TCTGCTCCAG
*
47351951 TACTGCTTAGGGAGATAAGATTTGTAATTTCCAGCTTGTTTCCC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCTTGTTTCCC
* * * * * * * * * *
47351995 TACTGCTTAGGGGGTTAAG-GCT-CACTGTCCTCGATCCG-CTCCAC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCC-AGCT-TGTTTCC-C
* *
47352039 TACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCTTGTTTTCC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCTTGTTTCCC
* * * * * * * *
47352083 TACTGCTTAGGGGGTTAAGGCTCACCGT--CTTCAATC-TG-CTCCAC
1 TACTGCTTAGGGAGATAA-GAT--CTGTAATTTCCAGCTTGTTTCC-C
* * * *
47352127 CACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTCTTTCCC
1 TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCTTGTTTCCC
47352171 TACTGCTTAGGG
1 TACTGCTTAGGG
47352183 GATTAAGGCT
Statistics
Matches: 130, Mismatches: 44, Indels: 28
0.64 0.22 0.14
Matches are distributed among these distances:
41 3 0.02
42 5 0.04
43 15 0.12
44 85 0.65
45 15 0.12
46 4 0.03
47 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.34
Consensus pattern (44 bp):
TACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCTTGTTTCCC
Found at i:47352625 original size:64 final size:64
Alignment explanation
Indices: 47352523--47352650 Score: 184
Period size: 64 Copynumber: 2.0 Consensus size: 64
47352513 TCATGTATCT
* *
47352523 ATGCTTATACCAAATAATTAGGATACTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATACCAAATAATTAGGATACTATGATCAAAATGAAACAAATGCTCCTAACTAGATGTG
** * * * *
47352587 ATGCTTATGTCAAATAGTTAGGATGCTATGATCAAAATGAAACCAGTGCTCCTAACTAGATGTG
1 ATGCTTATACCAAATAATTAGGATACTATGATCAAAATGAAACAAATGCTCCTAACTAGATGTG
47352651 TTATGAATGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (64 bp):
ATGCTTATACCAAATAATTAGGATACTATGATCAAAATGAAACAAATGCTCCTAACTAGATGTG
Found at i:47373121 original size:9 final size:9
Alignment explanation
Indices: 47373097--47373133 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
47373087 TGAGTTTTCG
47373097 AATTCGAAT
1 AATTCGAAT
* *
47373106 AACTCGAAC
1 AATTCGAAT
47373115 AATTCGAAT
1 AATTCGAAT
47373124 AATTCGAAT
1 AATTCGAAT
47373133 A
1 A
47373134 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (9 bp):
AATTCGAAT
Found at i:47373511 original size:15 final size:16
Alignment explanation
Indices: 47373491--47373520 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47373481 CCATTTACTT
47373491 TTCCTC-AAACTTTTA
1 TTCCTCAAAACTTTTA
47373506 TTCCTCAAAACTTTT
1 TTCCTCAAAACTTTT
47373521 TATTTTCCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (16 bp):
TTCCTCAAAACTTTTA
Found at i:47376450 original size:53 final size:53
Alignment explanation
Indices: 47376243--47376450 Score: 168
Period size: 53 Copynumber: 3.9 Consensus size: 53
47376233 CTTTCCTATT
* * * *
47376243 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTA
* * * * * * * *
47376296 TGAACTCACTATTGCCATACCTTGGCATGGTCTTACATAGG-ATCTTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTAC-TTGGTATCCTTGCCTTA
* * * * * * * *
47376349 TCGTAATTTATCAATGCCATGTCTCGACATGGTCTTACATGATTTCCTTGCCTTGA
1 T--AAACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTT-A
* *
47376405 -AAACTTACCAATGCCATGCCTTGGCATGATCTTACTTGGTATCCTT
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTT
47376451 AAACCCTAAT
Statistics
Matches: 115, Mismatches: 35, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
53 77 0.67
54 3 0.03
55 34 0.30
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTA
Found at i:47382022 original size:26 final size:26
Alignment explanation
Indices: 47381986--47382121 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
47381976 TGATACAAAT
47381986 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
47382012 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
47382038 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
47382064 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
47382090 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
47382116 TGATAA
1 TGATAA
47382122 GAATTTCATG
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:47383763 original size:27 final size:27
Alignment explanation
Indices: 47383722--47383847 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
47383712 GAGGAAGCGT
*
47383722 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
47383749 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
47383776 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
47383803 TCTGGTGGC-CTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* *
47383830 TCTGGTGACTCTGTCACA
1 TCTGGTGGCTCTGCCACA
47383848 TTATCTGTTC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 13 0.15
27 68 0.78
28 6 0.07
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:47387501 original size:49 final size:49
Alignment explanation
Indices: 47387441--47387678 Score: 426
Period size: 49 Copynumber: 4.9 Consensus size: 49
47387431 GTATGAGATA
*
47387441 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
47387490 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
47387539 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
47387588 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
47387635 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
47387679 TATATGTGTG
Statistics
Matches: 182, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 45 0.25
49 137 0.75
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:47387819 original size:37 final size:37
Alignment explanation
Indices: 47387772--47387855 Score: 159
Period size: 37 Copynumber: 2.3 Consensus size: 37
47387762 AAATATGTTT
*
47387772 CGGGTGAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
47387809 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
47387846 CGGGTAAGAC
1 CGGGTAAGAC
47387856 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.23
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:47390658 original size:7 final size:7
Alignment explanation
Indices: 47390646--47390674 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
47390636 ATTAAATTTA
47390646 ATTTCAC
1 ATTTCAC
47390653 ATTTCAC
1 ATTTCAC
47390660 ATTTCAC
1 ATTTCAC
47390667 ATTTCAC
1 ATTTCAC
47390674 A
1 A
47390675 ATTATGTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTTCAC
Found at i:47391295 original size:3 final size:3
Alignment explanation
Indices: 47391287--47391352 Score: 78
Period size: 3 Copynumber: 21.7 Consensus size: 3
47391277 AAGTGCCCAA
* * * *
47391287 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ACT ACT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
47391335 ATT ATT AAAT ATT ATT AT
1 ATT ATT -ATT ATT ATT AT
47391353 CTTTTTTTAC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
3 54 0.96
4 2 0.04
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:47391870 original size:152 final size:150
Alignment explanation
Indices: 47391684--47392006 Score: 465
Period size: 152 Copynumber: 2.1 Consensus size: 150
47391674 AGGAAAGTTT
* * * *
47391684 TGATTTTTTTTTTAAAAAGAGAAAGTTTATA-TTTTAAAAATAAAAATATGTTTTTTTAGTCATT
1 TGATTTTTTATTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAATATG-TTTTTTAGTCATT
* *
47391748 TTAAAGGA-AAGTTTAAAATTTTAAAACAAAGGTTTGATTTTTTTTCAACTATTTCGAAATCAAA
65 TTAAAGGAGAAGTTTAAAATTTTAAAACAAAGGTTTGA-TATTTTTCAACTATTTCAAAAT-AAA
* *
47391812 GTTTTGTTCTTTTAGAAAAGTAG
128 GTTTTGATCTTTAAGAAAAGTAG
* *
47391835 TGATTTTTTAATTAAAAAAAAGAAAGTTTAGATTTTTAAGAATAAAAATCTGTTTTTTAGTCATT
1 TGATTTTTT-ATTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTAGTCATT
* *
47391900 TTAAAGGAGAAGTTTAAAATTTTAAAACAAAGTTTTGATATTTTTCAATTATTTCAAAATAAAGT
65 TTAAAGGAGAAGTTTAAAATTTTAAAACAAAGGTTTGATATTTTTCAACTATTTCAAAATAAAGT
47391965 TTTGATCTTTAAGAAAAGTAG
130 TTTGATCTTTAAGAAAAGTAG
47391986 TGA-TTTTT-TTAAAAATAAAGA
1 TGATTTTTTATTAAAAA-AAAGA
47392007 TTTGATTTTG
Statistics
Matches: 156, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
148 7 0.04
149 5 0.03
150 5 0.03
151 36 0.23
152 58 0.37
153 45 0.29
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (150 bp):
TGATTTTTTATTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTAGTCATTT
TAAAGGAGAAGTTTAAAATTTTAAAACAAAGGTTTGATATTTTTCAACTATTTCAAAATAAAGTT
TTGATCTTTAAGAAAAGTAG
Found at i:47393308 original size:3 final size:3
Alignment explanation
Indices: 47393300--47393333 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
47393290 CTTTTAAAAT
47393300 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
47393334 AAGATCGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:47398090 original size:27 final size:27
Alignment explanation
Indices: 47397996--47398089 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
47397986 ACATGCTAGA
*
47397996 AAAATGGAGCCTTGATAGCAATCTATG
1 AAAATGAAGCCTTGATAGCAATCTATG
* * *
47398023 AAAAGGGAGCCTTGATAGTAATCTATG
1 AAAATGAAGCCTTGATAGCAATCTATG
* *
47398050 AAAATGAAGCCTTTATGGCAATCTATG
1 AAAATGAAGCCTTGATAGCAATCTATG
47398077 AAAATGAAGCCTT
1 AAAATGAAGCCTT
47398090 TGTGGTGCAC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (27 bp):
AAAATGAAGCCTTGATAGCAATCTATG
Found at i:47400667 original size:42 final size:42
Alignment explanation
Indices: 47400617--47400721 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 42
47400607 AAGCCTAACC
** *
47400617 ATGGTCTTACATGAAGTCTCATATCGATACCATATCCCAGAT
1 ATGGTCTTACACAAAGTCTCATATAGATACCATATCCCAGAT
**
47400659 ATGGTCTTACACAAAGTCTCATATAGATGTCATATCCCAGAT
1 ATGGTCTTACACAAAGTCTCATATAGATACCATATCCCAGAT
* * *
47400701 ATGGTTTTATACATAGTCTCA
1 ATGGTCTTACACAAAGTCTCA
47400722 GTAACCCTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
ATGGTCTTACACAAAGTCTCATATAGATACCATATCCCAGAT
Found at i:47405518 original size:8 final size:8
Alignment explanation
Indices: 47405496--47405525 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
47405486 AAAAAGTACA
47405496 AATAATTT
1 AATAATTT
47405504 AAATAATTT
1 -AATAATTT
47405513 AATAATTT
1 AATAATTT
47405521 AATAA
1 AATAA
47405526 ATAAAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
AATAATTT
Found at i:47406847 original size:11 final size:11
Alignment explanation
Indices: 47406831--47406890 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
47406821 GTAACATTAA
47406831 AAAATATATAT
1 AAAATATATAT
47406842 AAAATATATATT
1 AAAATATATA-T
*
47406854 AAAAGACTTATAT
1 AAAATA--TATAT
* *
47406867 ATAACATATAT
1 AAAATATATAT
47406878 GAAAA-ATATAT
1 -AAAATATATAT
47406889 AA
1 AA
47406891 TATTAAACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (11 bp):
AAAATATATAT
Found at i:47406893 original size:25 final size:24
Alignment explanation
Indices: 47406830--47406889 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
47406820 AGTAACATTA
* * *
47406830 AAAAATATATATAAAATATATATT
1 AAAAATATATATATAACATATATG
47406854 AAAAGACT-TATATATAACATATATG
1 AAAA-A-TATATATATAACATATATG
47406879 AAAAATATATA
1 AAAAATATATA
47406890 ATATTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.03
24 9 0.30
25 19 0.63
26 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (24 bp):
AAAAATATATATATAACATATATG
Found at i:47407619 original size:12 final size:14
Alignment explanation
Indices: 47407583--47407610 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47407573 AAAAGAGAGA
47407583 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
47407597 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
47407611 GAGAGAGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (14 bp):
AAAGGAGAGGGGAG
Found at i:47408953 original size:67 final size:66
Alignment explanation
Indices: 47408813--47409010 Score: 281
Period size: 67 Copynumber: 2.9 Consensus size: 66
47408803 TGAGACGTAG
* * *
47408813 AAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTAATAATTTGAAAAGTAGATTTCGAAAA
1 AAATT-AAAGGCTCAACTCACCTCTCGCAATATGAGTT-AT-CTTTGAAAAGTAGATTTTGAAAA
47408878 ACGA
63 ACGA
*
47408882 AAATTAAAGGCTCAACTCACCTCTCGCAATGTGAGTTGATCTTTGAAAAGTAGATTTTGAAAAAC
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTT-ATCTTTGAAAAGTAGATTTTGAAAAAC
47408947 GA
65 GA
* * *
47408949 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGAAAA-TAGAATTTGAAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTATC-TTTGAAAAGTAGATTTTGAAAA
47409011 TACCTTAGCG
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
66 14 0.12
67 68 0.57
68 32 0.27
69 5 0.04
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (66 bp):
AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTATCTTTGAAAAGTAGATTTTGAAAAACG
A
Found at i:47409122 original size:71 final size:72
Alignment explanation
Indices: 47408888--47409134 Score: 222
Period size: 71 Copynumber: 3.5 Consensus size: 72
47408878 ACGAAAATTA
* * * *
47408888 AAGGCTCAACTCACCTCTCGCAATGTGAGTTGATCTTTGAAAAGTAGATTTTGAAAA-A-C-GAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-TAGAATTTGAAAATACCTTAA
** **
47408950 AAT---TA
65 CGTGCCGC
* * * *
47408955 AAGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGAAAATAGAATTTGAAAATACCTTAGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTTGAAAATACCTTAAC
47409020 GTGCCGC
66 GTGCCGC
* * * *
47409027 AAGGTTCAACTCACTTCTCACAATATGAGTTGATTTTTGAAACATA-AA-TTGAAATTACCTTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTTGAAAATACCTTAA
* **
47409090 CGTGTCTT
65 CGTGCCGC
* * *
47409098 GAGGCTAAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
47409135 CTTGGAAAAC
Statistics
Matches: 144, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
66 12 0.08
67 39 0.27
68 1 0.01
69 2 0.01
71 49 0.34
72 38 0.26
73 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTTGAAAATACCTTAAC
GTGCCGC
Found at i:47409271 original size:160 final size:160
Alignment explanation
Indices: 47409004--47410346 Score: 2499
Period size: 160 Copynumber: 8.4 Consensus size: 160
47408994 AAAATAGAAT
* * * *
47409004 TTGAAAATACCTTAGCGTGCCGC-AAGGTTCAACTCACTTCTCACAATATGAGTTGATTTTTGAA
1 TTGAAAATACCTCAGCGTGCC-CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAA
* *
47409068 ACATAAATTGAAATTACCTTAACGTGTCTTGAGGCTAAACTCACCTCTCGCAATATGAGCTGATT
65 ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
47409133 TTCTTGGAAAACATGAATTAAAAAGCAAAAA
130 TTCTTGGAAAACATGAATTAAAAAGCAAAAA
*
47409164 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
*
47409229 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
47409294 TCTTGGAAAACATGAATTAAAAAGCAAAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
*
47409324 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
*
47409389 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
*
47409454 TCTTGGAAAACATGAATTAAAAAGGCAGAAA
131 TCTTGGAAAACATGAATTAAAAA-GCAAAAA
47409485 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
47409550 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
47409615 TCTTGGAAAACATGAATTAAAAAGCAAAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
47409645 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
47409710 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
47409775 TCTTGGAAAACATGAATTAAAAAGCAAAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
*
47409805 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
47409870 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
47409935 TCTTGGAAAACATGAATTAAAAAGCAAAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
* *
47409965 TTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
*
47410030 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
47410095 TCTTGGAAAACATGAATTAAAAAGCAAAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
47410125 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
47410190 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
66 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
* *
47410255 TCTTGGAAAACATGAATTAAAAAGTAGAAA
131 TCTTGGAAAACATGAATTAAAAAGCAAAAA
*
47410285 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTG
1 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
47410347 GAAAAAACAA
Statistics
Matches: 1160, Mismatches: 21, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
159 1 0.00
160 1002 0.86
161 157 0.14
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (160 bp):
TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAA
CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TCTTGGAAAACATGAATTAAAAAGCAAAAA
Found at i:47409277 original size:71 final size:70
Alignment explanation
Indices: 47409161--47409294 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 70
47409151 TAAAAAGCAA
* * * *
47409161 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-TTTTTG
47409226 AAACAT
65 AAACAT
* * *
47409232 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
47409295 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
70 5 0.09
71 51 0.91
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTTGA
AACAT
Found at i:47409437 original size:71 final size:70
Alignment explanation
Indices: 47409321--47409454 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 70
47409311 TAAAAAGCAA
* * * *
47409321 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-TTTTTG
47409386 AAACAT
65 AAACAT
* * *
47409392 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
47409455 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
70 5 0.09
71 51 0.91
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTTGA
AACAT
Found at i:47409598 original size:71 final size:71
Alignment explanation
Indices: 47409482--47409615 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
47409472 AAAAAGGCAG
* * *
47409482 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
47409547 AAACAT
66 AAACAT
* * *
47409553 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
47409616 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:47409758 original size:71 final size:71
Alignment explanation
Indices: 47409642--47409775 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
47409632 TAAAAAGCAA
* * *
47409642 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
47409707 AAACAT
66 AAACAT
* * *
47409713 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
47409776 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:47409906 original size:481 final size:480
Alignment explanation
Indices: 47408999--47410346 Score: 2509
Period size: 481 Copynumber: 2.8 Consensus size: 480
47408989 TTTTGAAAAT
* * * * *
47408999 AGAATTTGAAAATACCTTAGCGTGCCGC-AAGGTTCAACTCACTTCTCACAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGTGCC-CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
* *
47409063 TTGAAACATAAATTGAAATTACCTTAACGTGTCTTGAGGCTAAACTCACCTCTCGCAATATGAGC
65 TTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
47409128 TGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCT
130 TGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCT
*
47409193 CAACTTACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
195 CAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
*
47409258 GAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTTCTTGGAAAACATGAATTAAAAAGCAAAA
260 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAAAA
47409323 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAA
325 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAA
*
47409388 ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTT
390 ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
47409453 TTCTTGGAAAACATGAATTAAAAAGGC
455 TTCTTGGAAAACATGAATTAAAAA-GC
47409480 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
47409545 TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
66 TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
47409610 GATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
131 GATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
47409675 AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
196 AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
47409740 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAA
261 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAA
47409805 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
326 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
47409870 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
391 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
47409935 TCTTGGAAAACATGAATTAAAAAGC
456 TCTTGGAAAACATGAATTAAAAAGC
* * *
47409960 AAAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTTACTTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
47410025 TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
66 TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
*
47410090 GTTTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
131 GATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
47410155 AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
196 AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
* *
47410220 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGTAGAAA
261 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAA
* *
47410285 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTG
326 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
47410347 GAAAAAACAA
Statistics
Matches: 848, Mismatches: 18, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
480 382 0.45
481 466 0.55
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (480 bp):
AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
GATTTTCTTGGAAAACATGAATTAAAAAGCAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
AACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGCAAAAA
TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAA
CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TCTTGGAAAACATGAATTAAAAAGC
Found at i:47409918 original size:71 final size:71
Alignment explanation
Indices: 47409802--47409935 Score: 205
Period size: 71 Copynumber: 1.9 Consensus size: 71
47409792 TAAAAAGCAA
* * * *
47409802 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
47409867 AAACAT
66 AAACAT
* * *
47409873 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
47409936 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:47410078 original size:71 final size:70
Alignment explanation
Indices: 47409962--47410095 Score: 187
Period size: 71 Copynumber: 1.9 Consensus size: 70
47409952 TAAAAAGCAA
* * * *
47409962 AAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGCTG-TTTTTG
47410027 AAACAT
65 AAACAT
* * * *
47410033 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
47410096 CTTGGAAAAC
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
70 5 0.09
71 50 0.91
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGAGCTGTTTTTGA
AACAT
Found at i:47410238 original size:71 final size:71
Alignment explanation
Indices: 47410122--47410255 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
47410112 TAAAAAGCAA
* * *
47410122 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
47410187 AAACAT
66 AAACAT
* * *
47410193 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
47410256 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:47416998 original size:30 final size:29
Alignment explanation
Indices: 47416906--47417005 Score: 114
Period size: 28 Copynumber: 3.4 Consensus size: 29
47416896 NNNNNNNNNN
* * *
47416906 GCACACTTAGTGCTATATATTTTCAGCTC
1 GCACACTTAGTGCTATAAATTTTAAACTC
*
47416935 GCACACTTAGTGCTATAGAA--TCAAACTC
1 GCACACTTAGTGCTATA-AATTTTAAACTC
* *
47416963 GCACACTTAGTGCTGTACAATTTTAAACCC
1 GCACACTTAGTGCTATA-AATTTTAAACTC
47416993 GCACACTTAGTGC
1 GCACACTTAGTGC
47417006 CAATCTTGTC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 17 0.28
30 20 0.33
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCTATAAATTTTAAACTC
Found at i:47424875 original size:30 final size:29
Alignment explanation
Indices: 47424781--47424882 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
47424771 TATAGTGAAT
* * *
47424781 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
47424810 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
47424838 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
47424868 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
47424883 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:47429404 original size:29 final size:29
Alignment explanation
Indices: 47429348--47429449 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
47429338 TACCTAAATT
* * *
47429348 TGGCCCATTAAGCCC-AATCATATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
* ** *
47429376 TGGCTCATTAGGCCTGAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
47429405 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
47429434 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
47429450 GTCACATTCA
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
28 12 0.20
29 49 0.80
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATGTATA
Found at i:47430467 original size:40 final size:40
Alignment explanation
Indices: 47430415--47430570 Score: 240
Period size: 40 Copynumber: 3.9 Consensus size: 40
47430405 AGCCCAGATG
* *
47430415 TAACAACCAGCACAAATGCCTTCGGGACTTAACCCGTAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGAAAA
* * **
47430455 TAGCAACTAGCACGAATGCCTTCGGGACTTAACCCGGGAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGAAAA
*
47430495 TAACAACCAGCACGAATGCCTTCGGGACTTAACCTGAAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGAAAA
*
47430535 TAACAACCAGCATGAATGCCTTCGGGACTTAACCCG
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCG
47430571 GATATAATCC
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (40 bp):
TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGAAAA
Found at i:47432900 original size:16 final size:16
Alignment explanation
Indices: 47432881--47432921 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
47432871 AAACTTTCGG
47432881 CTTTTCAGCATTTCAA
1 CTTTTCAGCATTTCAA
* *
47432897 CTTTTCGGCATTTCGA
1 CTTTTCAGCATTTCAA
*
47432913 CATTTCAGC
1 CTTTTCAGC
47432922 TTTTGCCGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (16 bp):
CTTTTCAGCATTTCAA
Found at i:47432904 original size:24 final size:24
Alignment explanation
Indices: 47432875--47432925 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
47432865 GTACCCAAAC
*
47432875 TTTCGGCTTTTC-AGCATTTCAACT
1 TTTCGGCATTTCGA-CATTTCAACT
*
47432899 TTTCGGCATTTCGACATTTCAGCT
1 TTTCGGCATTTCGACATTTCAACT
47432923 TTT
1 TTT
47432926 GCCGATTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.16, C:0.24, G:0.14, T:0.47
Consensus pattern (24 bp):
TTTCGGCATTTCGACATTTCAACT
Found at i:47438018 original size:42 final size:43
Alignment explanation
Indices: 47437915--47438078 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
47437905 CAATGCCAAC
* * *
47437915 GTCCCAGACCTGGTCTTATATGTAATCAAATATCGATACCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATACCACT
* * *
47437958 GTACCAGACAAGGTCTTACATGAAATCAAATA-CGATGCCGA-T
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATACC-ACT
* *
47438000 GTCCCAGATATGGTCTTACATGTAAATCATAA-ATCGATGCCAAC-
1 GTCCCAGACATGGTCTTACATG-AAATCA-AATATCGATACC-ACT
* * * * * *
47438044 ATCCCAGACGTGATCTTACACGAAAACACATATCG
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCG
47438079 GATCCTATGT
Statistics
Matches: 98, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
42 27 0.28
43 44 0.45
44 27 0.28
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATCGATACCACT
Found at i:47455887 original size:27 final size:28
Alignment explanation
Indices: 47455830--47455899 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
47455820 AAATTTGTAC
**
47455830 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
47455858 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
47455885 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
47455900 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:47456336 original size:18 final size:18
Alignment explanation
Indices: 47456313--47456348 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
47456303 TGGATGATTG
47456313 TCGAATGCTTAGGACTTA
1 TCGAATGCTTAGGACTTA
47456331 TCGAATGCTTAGGACTTA
1 TCGAATGCTTAGGACTTA
47456349 CTGAGTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (18 bp):
TCGAATGCTTAGGACTTA
Found at i:47471052 original size:21 final size:21
Alignment explanation
Indices: 47471028--47471070 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
47471018 TTTCCATCCT
47471028 TTGTAGCCCCGCCAAGCTAGC
1 TTGTAGCCCCGCCAAGCTAGC
***
47471049 TTGTAGTTTCGCCAAGCTAGC
1 TTGTAGCCCCGCCAAGCTAGC
47471070 T
1 T
47471071 CGGGGATCGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.28
Consensus pattern (21 bp):
TTGTAGCCCCGCCAAGCTAGC
Found at i:47473951 original size:16 final size:16
Alignment explanation
Indices: 47473930--47473962 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
47473920 CTTTCACGTA
47473930 GCTCTCTTGTCTACAT
1 GCTCTCTTGTCTACAT
47473946 GCTCTCTTGTCTACAT
1 GCTCTCTTGTCTACAT
47473962 G
1 G
47473963 GTGTCCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.30, G:0.15, T:0.42
Consensus pattern (16 bp):
GCTCTCTTGTCTACAT
Found at i:47473995 original size:87 final size:87
Alignment explanation
Indices: 47473859--47474033 Score: 350
Period size: 87 Copynumber: 2.0 Consensus size: 87
47473849 TTGTCTCGTA
47473859 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTT
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTT
47473924 CACGTAGCTCTCTTGTCTACAT
66 CACGTAGCTCTCTTGTCTACAT
47473946 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTT
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTT
47474011 CACGTAGCTCTCTTGTCTACAT
66 CACGTAGCTCTCTTGTCTACAT
47474033 G
1 G
47474034 GGATACATCT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.37
Consensus pattern (87 bp):
GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTT
CACGTAGCTCTCTTGTCTACAT
Found at i:47483551 original size:27 final size:27
Alignment explanation
Indices: 47483513--47483577 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
47483503 GTGACAGAGT
* *
47483513 CACCAGATACAGATATGTTGTGGC-GTGC
1 CACCAGA-ACAGATAT-ATGTGGCAGGGC
47483541 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATATGTGGCAGGGC
*
47483568 CACTAGAACA
1 CACCAGAACA
47483578 AATAATTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.18
27 20 0.61
28 7 0.21
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGGGC
Found at i:47489487 original size:27 final size:26
Alignment explanation
Indices: 47489443--47489494 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
47489433 CTCGCTGCAA
*
47489443 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
47489470 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
47489495 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:47489532 original size:67 final size:68
Alignment explanation
Indices: 47489424--47489579 Score: 251
Period size: 69 Copynumber: 2.3 Consensus size: 68
47489414 GAGGAAGCGT
* *
47489424 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC-ATATATCTGTTCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGACCTCGCCACAATATATATGTTCTGGTGACTTCGTCACA
47489488 ATA
66 ATA
*
47489491 TCTGGCAGCCTCGCTGCAATCTGGTGACTTCGCCACATATATATATGTTCTGGTGACTTCGTCAC
1 TCTGGCAGCCTCGCTGCAATCTGGTGACCTCGCCACA-ATATATATGTTCTGGTGACTTCGTCAC
*
47489556 AATG
65 AATA
*
47489560 TCTAGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
47489580 TTCTGTGGTG
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
67 34 0.41
69 48 0.59
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (68 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGACCTCGCCACAATATATATGTTCTGGTGACTTCGTCACA
ATA
Found at i:47496236 original size:33 final size:32
Alignment explanation
Indices: 47496187--47496250 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
47496177 CTCGCTACAA
* *
47496187 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
*
47496220 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
47496251 GTGACTTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:47501953 original size:50 final size:51
Alignment explanation
Indices: 47501878--47502004 Score: 211
Period size: 50 Copynumber: 2.5 Consensus size: 51
47501868 CCATGGCAAC
*
47501878 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGA-
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGAG
*
47501928 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAATGAG
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGAG
* *
47501979 AAGTGAAAAGTGATAGCTTCAGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
47502005 CTGATTAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
50 48 0.67
51 24 0.33
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (51 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGAG
Found at i:47502015 original size:31 final size:31
Alignment explanation
Indices: 47501980--47502051 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
47501970 AAAAATGAGA
*
47501980 AGTGAAAAGTGATAGCTTCAGCTACCTGATT
1 AGTGAAAAGTGATAGCTTCAGCTACCTGATC
* * *
47502011 AGTGAAAAGTGGTAGCTTCTGCTACTTGATC
1 AGTGAAAAGTGATAGCTTCAGCTACCTGATC
47502042 AGTGAAAAGT
1 AGTGAAAAGT
47502052 AGTAGTTCCG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (31 bp):
AGTGAAAAGTGATAGCTTCAGCTACCTGATC
Found at i:47502066 original size:31 final size:31
Alignment explanation
Indices: 47501980--47502068 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 31
47501970 AAAAATGAGA
* *
47501980 AGTGAAAAGT-GATAGCTTCAGCTACCTGATT
1 AGTGAAAAGTAG-TAGCTTCGGCTACCTGATC
* * *
47502011 AGTGAAAAGTGGTAGCTTCTGCTACTTGATC
1 AGTGAAAAGTAGTAGCTTCGGCTACCTGATC
47502042 AGTGAAAAGTAGTAG-TTCCGGCTACCT
1 AGTGAAAAGTAGTAGCTT-CGGCTACCT
47502069 TGTAACAGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 2 0.04
31 47 0.94
32 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AGTGAAAAGTAGTAGCTTCGGCTACCTGATC
Found at i:47506055 original size:48 final size:48
Alignment explanation
Indices: 47505941--47506041 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
47505931 GCCACAATAT
* *
47505941 ATATACACATCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
1 ATATACATAGCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
* *
47505989 ATATGCATGGCTCATACATATTTCACATTAGCC-TTTCGGCTTTACCAC
1 ATATACATAGCTCATACATATTTCACATTAGCCATTT-GGCTTTACCAC
47506037 ATATA
1 ATATA
47506042 TATATCTTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 3 0.06
48 44 0.94
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.36
Consensus pattern (48 bp):
ATATACATAGCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
Found at i:47507359 original size:26 final size:26
Alignment explanation
Indices: 47507314--47507365 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
47507304 TTAAATTCTG
* *
47507314 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTT-AAAATTCA
47507341 GCATACATTCGAACA-TTAAAATTCA
1 GCATACATTCGAACACTTAAAATTCA
47507366 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 8 0.35
26 2 0.09
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (26 bp):
GCATACATTCGAACACTTAAAATTCA
Found at i:47508631 original size:31 final size:31
Alignment explanation
Indices: 47508596--47508683 Score: 131
Period size: 31 Copynumber: 2.8 Consensus size: 31
47508586 CATACCTGAC
*
47508596 CAGTGAAAAGTGGTAGCTCCGGCTACCTAAT
1 CAGTGAAAAGTGGTAGCTTCGGCTACCTAAT
* * *
47508627 CAGTGAAAAATGGTAGCTTCGGCTACTTGAT
1 CAGTGAAAAGTGGTAGCTTCGGCTACCTAAT
*
47508658 CAGTGAATAGTGGTAGCTTCGGCTAC
1 CAGTGAAAAGTGGTAGCTTCGGCTAC
47508684 AAGTGACAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
CAGTGAAAAGTGGTAGCTTCGGCTACCTAAT
Found at i:47508826 original size:46 final size:47
Alignment explanation
Indices: 47508709--47508831 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 47
47508699 AGTGATTTCC
* * * *
47508709 GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGGTACT
1 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACT
* *
47508756 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTC-
1 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACT
* * *
47508802 GTGTAAGACCATAGCTGGGCTATGGCATCA
1 GTATAAGACCATATCTGGGATATGGCATCA
47508832 TTATGTGAAG
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 27 0.40
47 40 0.60
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (47 bp):
GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACT
Found at i:47508869 original size:42 final size:42
Alignment explanation
Indices: 47508802--47508914 Score: 163
Period size: 42 Copynumber: 2.7 Consensus size: 42
47508792 TATGTGATTC
* **
47508802 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
1 GTGTAAGACCATAGTTGAACTATGGCATCATTATGTGAAGAT
* *
47508844 GTGTAAGACCATAGTTGAACAATGGCATTATTATGTGAAGAT
1 GTGTAAGACCATAGTTGAACTATGGCATCATTATGTGAAGAT
* *
47508886 GTGTAAGACCATACTTGAAGTATGGCATC
1 GTGTAAGACCATAGTTGAACTATGGCATC
47508915 GAGAAAACAA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGAACTATGGCATCATTATGTGAAGAT
Found at i:47513334 original size:31 final size:31
Alignment explanation
Indices: 47513296--47513475 Score: 236
Period size: 31 Copynumber: 5.8 Consensus size: 31
47513286 ACAAATGAGA
*
47513296 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
47513327 AGTGAAAAGTGGTAGCTTCTGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
47513358 AGTGAAAAGTAGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
** * *
47513389 AGTGAAAAGTTATAGCTGCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
47513420 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
47513451 AATGAAGAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
47513476 AAGTGACAAG
Statistics
Matches: 129, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
30 2 0.02
31 126 0.98
32 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:47514987 original size:28 final size:28
Alignment explanation
Indices: 47514922--47515022 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
47514912 ATAGTGAATC
*
47514922 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
47514951 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
47514979 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
47515009 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47515023 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:47516739 original size:46 final size:43
Alignment explanation
Indices: 47516687--47516826 Score: 133
Period size: 42 Copynumber: 3.2 Consensus size: 43
47516677 TGCTACTGTA
* * *
47516687 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGAT-TCGTG
1 TAAGACCATAACTGGGCTATGGCATCA--GAGATATG-AATAT-GTG
* *
47516733 TAAGACCATAACTGAGCTATGGCATC-GATATATGAATATGTG
1 TAAGACCATAACTGGGCTATGGCATCAGAGATATGAATATGTG
* ** * *
47516775 TAAGACCATAGCTGGGCTATGGCATCA-TTATGTGAAGATGTG
1 TAAGACCATAACTGGGCTATGGCATCAGAGATATGAATATGTG
47516817 TAAGACCATA
1 TAAGACCATA
47516827 GTTGAACAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
42 51 0.62
43 8 0.10
46 23 0.28
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (43 bp):
TAAGACCATAACTGGGCTATGGCATCAGAGATATGAATATGTG
Found at i:47516794 original size:42 final size:42
Alignment explanation
Indices: 47516730--47516842 Score: 147
Period size: 42 Copynumber: 2.7 Consensus size: 42
47516720 TATGTGATTC
* *
47516730 GTGTAAGACCATAACTGAGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGAGCTATGGCATC-ATTATATGAAGAT
* *
47516772 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGAGCTATGGCATCATTATATGAAGAT
* * *
47516814 GTGTAAGACCATAGTTGAACAATGGCATC
1 GTGTAAGACCATAGCTGAGCTATGGCATC
47516843 GAGAAAACGA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 1 0.02
42 61 0.98
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGAGCTATGGCATCATTATATGAAGAT
Found at i:47520508 original size:18 final size:18
Alignment explanation
Indices: 47520482--47520516 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47520472 TTGATCATGC
*
47520482 TCACATATCATTTTCATT
1 TCACATATCACTTTCATT
*
47520500 TCACCTATCACTTTCAT
1 TCACATATCACTTTCAT
47520517 GTAATTCACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.46
Consensus pattern (18 bp):
TCACATATCACTTTCATT
Found at i:47528081 original size:49 final size:49
Alignment explanation
Indices: 47528024--47528135 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 49
47528014 GCCGTGGCCT
* ** * *
47528024 AGATAGGTCTTACAATGAATTTTGTATATCGAG-GTCGATGTCATGTCCC
1 AGATAGGTCTTACAATGAATCTCATATATCG-GTGTCGATGCCATATCCC
* ** *
47528073 AGATAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATATCCC
1 AGATAGGTCTTACAATGAATCTCATATATCGGTGTCGATGCCATATCCC
47528122 AGATAGGTCTTACA
1 AGATAGGTCTTACA
47528136 CTGACACACA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.02
49 52 0.98
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (49 bp):
AGATAGGTCTTACAATGAATCTCATATATCGGTGTCGATGCCATATCCC
Found at i:47528266 original size:46 final size:45
Alignment explanation
Indices: 47528206--47528321 Score: 164
Period size: 46 Copynumber: 2.5 Consensus size: 45
47528196 GATGGTGATT
*
47528206 CATGTCCAAGACATGTCTTACACTAGCTCTCATCTCAA-T-GCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTCTCA--T-AAGTGGCCGATG
*
47528252 CATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTCTCATAA-GTGGCCGATG
47528298 CATGTCCTAGACATGTCTTACACT
1 CATGTCCTAGACATGTCTTACACT
47528322 GTCTCACATA
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
45 1 0.02
46 61 0.94
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (45 bp):
CATGTCCTAGACATGTCTTACACTAGCTCTCATAAGTGGCCGATG
Found at i:47533821 original size:29 final size:27
Alignment explanation
Indices: 47533787--47533889 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
47533777 TACTCGATCA
*
47533787 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
47533816 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
47533845 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
47533874 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
47533890 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:47539537 original size:19 final size:21
Alignment explanation
Indices: 47539495--47539542 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
47539485 ATTCAAATGC
47539495 ATATAAAT-T-TATATTGTAT
1 ATATAAATATATATATTGTAT
*
47539514 ATATACATATATATATT-TAT
1 ATATAAATATATATATTGTAT
47539534 -TATAAATAT
1 ATATAAATAT
47539543 CACCTAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 15 0.60
20 4 0.16
21 6 0.24
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
ATATAAATATATATATTGTAT
Found at i:47540050 original size:43 final size:43
Alignment explanation
Indices: 47539966--47540051 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
47539956 AAATCGTACA
** * *
47539966 ATGCCATCGTCCCAGACGTGGTCTTACATGTAACCATATATCG
1 ATGCCATCGTCCCAGACAAGGTCTTACATGTAAACACATATCG
* *
47540009 ATGCCATTGTCCTAGACAAGGTCTTAC-TCGTAAACACATATCG
1 ATGCCATCGTCCCAGACAAGGTCTTACAT-GTAAACACATATCG
47540052 GAATCACATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGCCATCGTCCCAGACAAGGTCTTACATGTAAACACATATCG
Found at i:47542749 original size:230 final size:230
Alignment explanation
Indices: 47542338--47542791 Score: 766
Period size: 230 Copynumber: 2.0 Consensus size: 230
47542328 CAATCTATTG
47542338 ACAACAACCCAGATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAAATACAAAATCCATCGT
1 ACAACAACCCAGATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAAATACAAAATCCATCGT
*
47542403 AACTCTATCCCATTTCCACTCAGGTATCATGACAGGCTAAAGTAATCTTGAAGGCACATGATGTT
66 AACTCTATCCCATTTCCACTCAGGTATCATGACAGGCTAAAGTAATCCTGAAGGCACATGATGTT
* * *
47542468 CAGCTTTTACTTGTTGACAGACTAAACATTTTGTAACAAAGTCAGAAATGTCTCTCTTCATACCA
131 CAGCTTTTACTTGTTGACAGACTAAACATTTTGTAACAAAGTAAAAAATGTCTCGCTTCATACCA
47542533 TGCC-ACTAGTAAAGTTGTTTCAAATCATTCTATCA
196 TGCCAAC-AGTAAAGTTGTTTCAAATCATTCTATCA
* * * * *
47542568 ACAACAATCCATATTGCATCTTTCTTGCCCGGTGTCAATGGTAAACCAGATACAAAATCCATCGT
1 ACAACAACCCAGATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAAATACAAAATCCATCGT
* * *
47542633 AACTCTATCCCATTTCCACTCAGGTATCATGATAGGCTGAAGTAATCCTGAAGGCACCTGATGTT
66 AACTCTATCCCATTTCCACTCAGGTATCATGACAGGCTAAAGTAATCCTGAAGGCACATGATGTT
*
47542698 TAGCTTTTACTTGTTGACAGACTAAACATTTTGTAACAAAGTAAAAAATGTCTCGCTTCATACCA
131 CAGCTTTTACTTGTTGACAGACTAAACATTTTGTAACAAAGTAAAAAATGTCTCGCTTCATACCA
*
47542763 TGCCAACAGTAAAGTTGTTTCAGATCATT
196 TGCCAACAGTAAAGTTGTTTCAAATCATT
47542792 ATACATCTTT
Statistics
Matches: 209, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
230 207 0.99
231 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (230 bp):
ACAACAACCCAGATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAAATACAAAATCCATCGT
AACTCTATCCCATTTCCACTCAGGTATCATGACAGGCTAAAGTAATCCTGAAGGCACATGATGTT
CAGCTTTTACTTGTTGACAGACTAAACATTTTGTAACAAAGTAAAAAATGTCTCGCTTCATACCA
TGCCAACAGTAAAGTTGTTTCAAATCATTCTATCA
Found at i:47545708 original size:29 final size:29
Alignment explanation
Indices: 47545673--47545804 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
47545663 ATAAATGATC
*** *
47545673 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
47545702 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
47545731 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
47545760 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
47545789 TCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
47545805 CTACCTTCCA
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 95 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:47545825 original size:58 final size:58
Alignment explanation
Indices: 47545673--47545834 Score: 173
Period size: 58 Copynumber: 2.8 Consensus size: 58
47545663 ATAAATGATC
*** * * * *
47545673 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTCAAGCCCACACACTTAGTGCCATATAATTTAAGT
* * ** *
47545731 TTGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTCAAGCCCACACACTTAGTGCCATATAATTTAAGT
* **
47545789 TCGCACACTTAGTGCCCTA-CCTTCCAAGCCCACACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATAATT-CAAGCCCACACACTTAGTGCCA
47545835 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 2 0.02
58 87 0.98
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATAATTCAAGCCCACACACTTAGTGCCATATAATTTAAGT
Found at i:47553786 original size:29 final size:29
Alignment explanation
Indices: 47553751--47553911 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
47553741 ATAAACGATC
*** *
47553751 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
47553780 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
47553809 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
47553838 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
47553867 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
47553896 TCGCACACTTTGTGCC
1 TCGCACACTTAGTGCC
47553912 TTACCTTCCA
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:47553933 original size:58 final size:58
Alignment explanation
Indices: 47553752--47553941 Score: 213
Period size: 58 Copynumber: 3.3 Consensus size: 58
47553742 TAAACGATCT
*** * * * **
47553752 CGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCC
* * **
47553810 TGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCC
* *
47553868 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTTGTGCC-T-TACCTTCCAAGCC
1 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATA-ATT-CAAGCC
*
47553926 CGTACACTTAGTGCCA
1 CGCACACTTAGTGCCA
47553942 ATGTTGTTAC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
56 2 0.02
57 3 0.03
58 112 0.96
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTCAAGCC
Found at i:47553933 original size:87 final size:87
Alignment explanation
Indices: 47553752--47553941 Score: 240
Period size: 87 Copynumber: 2.2 Consensus size: 87
47553742 TAAACGATCT
* * *
47553752 CGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACAC
1 CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
* **
47553817 TTAGTGCCATATAATTTAAGTT
66 TTAGTGCCATATAATTCAAGCC
* * *
47553839 CGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTCGCACAC
1 CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
* *
47553904 TTTGTGCC-T-TACCTTCCAAGCC
66 TTAGTGCCATATA-ATT-CAAGCC
*
47553926 CGTACACTTAGTGCCA
1 CGCACACTTAGTGCCA
47553942 ATGTTGTTAC
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
85 2 0.02
86 3 0.03
87 84 0.94
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (87 bp):
CGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACAC
TTAGTGCCATATAATTCAAGCC
Done.