Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 161 of 770
Found at i:47555247 original size:20 final size:23
Alignment explanation
Indices: 47555200--47555250 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 23
47555190 TACACTTTTT
*
47555200 TTTCTTTTGTTTTCATCATATTCT
1 TTTCTTTTGTTTTCA-CATATTCA
47555224 TTTCTTTT-TTTTCA-AT-TTCA
1 TTTCTTTTGTTTTCACATATTCA
47555244 TTTCTTT
1 TTTCTTT
47555251 ATTCTTTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 10 0.38
21 2 0.08
23 6 0.23
24 8 0.31
ACGTcount: A:0.12, C:0.16, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTCTTTTGTTTTCACATATTCA
Found at i:47566288 original size:13 final size:13
Alignment explanation
Indices: 47566270--47566298 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
47566260 CACACGGCTG
47566270 TTTAAATAGCCAA
1 TTTAAATAGCCAA
47566283 TTTAAATAGCCAA
1 TTTAAATAGCCAA
47566296 TTT
1 TTT
47566299 GCCACCCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (13 bp):
TTTAAATAGCCAA
Found at i:47568644 original size:27 final size:27
Alignment explanation
Indices: 47568614--47568675 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
47568604 ATTTAAACCC
47568614 TAGGGGTATATCGGTAATTTTACTCTT
1 TAGGGGTATATCGGTAATTTTACTCTT
* *
47568641 TA-GGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGT-ATATCGGTAATTTTACTCTT
47568668 TAGGGGTA
1 TAGGGGTA
47568676 ATTTCGTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 4 0.13
27 23 0.74
28 4 0.13
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.44
Consensus pattern (27 bp):
TAGGGGTATATCGGTAATTTTACTCTT
Found at i:47570504 original size:19 final size:18
Alignment explanation
Indices: 47570467--47570510 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
47570457 ATACATACAG
47570467 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
47570484 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
47570503 TACTAATT
1 TAATAATT
47570511 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:47579662 original size:22 final size:22
Alignment explanation
Indices: 47579634--47579678 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
47579624 TTGTCTCTCC
*
47579634 ATTTCTCTTACAAATTCTTGCT
1 ATTTCTCTTACAAATTCATGCT
*
47579656 ATTTCTCTTACAACTTCATGCT
1 ATTTCTCTTACAAATTCATGCT
47579678 A
1 A
47579679 CCTGAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.47
Consensus pattern (22 bp):
ATTTCTCTTACAAATTCATGCT
Found at i:47581828 original size:16 final size:15
Alignment explanation
Indices: 47581804--47581833 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
47581794 AACTATTTTA
47581804 TTACAAATTTCACTC
1 TTACAAATTTCACTC
47581819 TTACATAATTTCACT
1 TTACA-AATTTCACT
47581834 TGCTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:47583423 original size:23 final size:21
Alignment explanation
Indices: 47583349--47583410 Score: 115
Period size: 21 Copynumber: 3.0 Consensus size: 21
47583339 CCTGATCAGT
*
47583349 ATACAACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
47583370 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
47583391 ATACGACACACGAGGTGCCT
1 ATACGACACACGAGGTGCCT
47583411 AAAATATGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.31, C:0.29, G:0.26, T:0.15
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:47583436 original size:44 final size:42
Alignment explanation
Indices: 47583349--47583436 Score: 104
Period size: 42 Copynumber: 2.0 Consensus size: 42
47583339 CCTGATCAGT
* * *
47583349 ATACAACACACGAGGTGCCTGATACGACACACGAGGTGCCTG
1 ATACAACACACGAGGTGCCTAATACGACACACAAAGTGCCTG
* * *
47583391 ATACGACACACGAGGTGCCTAAAATATGACACATAAAGTGCCTG
1 ATACAACACACGAGGTGCCT--AATACGACACACAAAGTGCCTG
47583435 AT
1 AT
47583437 CGATAAAGCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 19 0.50
44 19 0.50
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (42 bp):
ATACAACACACGAGGTGCCTAATACGACACACAAAGTGCCTG
Found at i:47583833 original size:15 final size:14
Alignment explanation
Indices: 47583809--47583848 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
47583799 TATATATTAT
47583809 ATAATTCAATCAAA
1 ATAATTCAATCAAA
*
47583823 ATAATTTCAATCAAT
1 ATAA-TTCAATCAAA
47583838 ATAAATTCAAT
1 AT-AATTCAAT
47583849 AAATTCATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 17 0.74
16 2 0.09
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATTCAATCAAA
Found at i:47584148 original size:15 final size:15
Alignment explanation
Indices: 47584130--47584158 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47584120 TCTATTTCGT
47584130 TTCATTCTGTTTCTA
1 TTCATTCTGTTTCTA
47584145 TTCATTCTGTTTCT
1 TTCATTCTGTTTCT
47584159 TTCCTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.21, G:0.07, T:0.62
Consensus pattern (15 bp):
TTCATTCTGTTTCTA
Found at i:47584393 original size:21 final size:22
Alignment explanation
Indices: 47584318--47584396 Score: 65
Period size: 21 Copynumber: 3.6 Consensus size: 22
47584308 TATTCATTTT
* *
47584318 ATAAT-ATAATATCAATTTATATA
1 ATAATAATAATAACAA-TAATA-A
*
47584341 ATAATAACAATAACAATAATAA
1 ATAATAATAATAACAATAATAA
* *
47584363 TTAA-ATATAA-AACTATAATAA
1 ATAATA-ATAATAACAATAATAA
47584384 ATAATAATAATAA
1 ATAATAATAATAA
47584397 TTTAATATAT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
21 18 0.40
22 10 0.22
23 9 0.20
24 8 0.18
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
ATAATAATAATAACAATAATAA
Found at i:47589736 original size:21 final size:23
Alignment explanation
Indices: 47589708--47589771 Score: 78
Period size: 21 Copynumber: 2.9 Consensus size: 23
47589698 CCTGATCAGT
47589708 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTAAA
** *
47589730 A-ACGACACACGAGGTGCCTAAA
1 ATACGACACATAAAGTGCCTAAA
*
47589752 ATATGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
47589772 GATCGATAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
21 15 0.45
22 4 0.12
23 14 0.42
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTAAA
Found at i:47590171 original size:15 final size:14
Alignment explanation
Indices: 47590147--47590186 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
47590137 TATATATTAT
47590147 ATAATTCAATCAAA
1 ATAATTCAATCAAA
*
47590161 ATAATTTCAATCAAT
1 ATAA-TTCAATCAAA
47590176 ATAAATTCAAT
1 AT-AATTCAAT
47590187 AAATTCATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 17 0.74
16 2 0.09
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATTCAATCAAA
Found at i:47590478 original size:15 final size:14
Alignment explanation
Indices: 47590458--47590499 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
47590448 TCCCCTGCTC
47590458 TCTGTTTCGTTTCAT
1 TCTGTTTC-TTTCAT
47590473 TCTGTTTCTATTCAT
1 TCTGTTTCT-TTCAT
*
47590488 TTTGTTTCTTTC
1 TCTGTTTCTTTC
47590500 CTTTATTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.07, C:0.19, G:0.10, T:0.64
Consensus pattern (14 bp):
TCTGTTTCTTTCAT
Found at i:47600485 original size:29 final size:30
Alignment explanation
Indices: 47600428--47600546 Score: 115
Period size: 29 Copynumber: 4.2 Consensus size: 30
47600418 TACATACATG
* * *
47600428 CATATGGTCCA-CTAGGCCCAA-TCTTATT
1 CATATGGCCCATCTACGCCCAATTCATATT
* *
47600456 CAAATGGCCCATCTA-GCCCAGTTCATATT
1 CATATGGCCCATCTACGCCCAATTCATATT
* * *
47600485 CTTATGGCCCA-CTAGGCCCAATTCACATT
1 CATATGGCCCATCTACGCCCAATTCATATT
*
47600514 CATATGGCCCAT-TACGCCCAAATCATATT
1 CATATGGCCCATCTACGCCCAATTCATATT
47600543 -ATAT
1 CATAT
47600547 TCGTGCTCAC
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
28 21 0.28
29 54 0.72
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTACGCCCAATTCATATT
Found at i:47600499 original size:57 final size:58
Alignment explanation
Indices: 47600430--47600542 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 58
47600420 CATACATGCA
* ** **
47600430 TATGGTCCACTAGGCCCAA-TCTTATTCAAATGGCCCATCTA-GCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCAT-TACGCCCAAATCATATTCT
*
47600487 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCATTACGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCATTACGCCCAAATCATATT
47600543 ATATTCGTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 20 0.42
58 28 0.58
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCATTACGCCCAAATCATATTCT
Found at i:47604261 original size:40 final size:40
Alignment explanation
Indices: 47604180--47604372 Score: 158
Period size: 40 Copynumber: 4.6 Consensus size: 40
47604170 AAACCAAGTA
* * * *
47604180 CCTTCGGGATTTAG-CCAGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
47604219 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
47604259 CCTTTGGGACTTAGCCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 -C-------CTT---CGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
47604310 CCTTC-AGATCTTAGTCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCACAAATG
*
47604350 CCTTCGGGACTTACCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
47604373 CATTCGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 29
0.76 0.07 0.17
Matches are distributed among these distances:
39 16 0.13
40 65 0.51
41 3 0.02
43 3 0.02
48 3 0.02
50 1 0.01
51 36 0.28
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:47604323 original size:51 final size:52
Alignment explanation
Indices: 47604223--47604328 Score: 171
Period size: 51 Copynumber: 2.1 Consensus size: 52
47604213 CAACTGCCTT
**
47604223 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAG-C
1 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTCAGACTTAGTC
47604274 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC-TTCAGATCTTAGTC
1 CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTCAGA-CTTAGTC
47604326 CGG
1 CGG
47604329 ATATAGTCAC
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
50 4 0.08
51 43 0.84
52 4 0.08
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (52 bp):
CGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTCAGACTTAGTC
Found at i:47604345 original size:91 final size:90
Alignment explanation
Indices: 47604184--47604362 Score: 227
Period size: 91 Copynumber: 2.0 Consensus size: 90
47604174 CAAGTACCTT
* * * *
47604184 CGGGATTTAGCCAGATATAGCTACTCGCTCAACTGCCTTCGGGACTTAGCCCGGATATAGTAACT
1 CGGGACTTAGCCAGATATAGCTACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACT
* * *
47604249 CGCACAAATGCCTTTGGGACTTAGC
66 AGCACAAAAGCCTTCGGGACTTAGC
* * *
47604274 CGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-AGATCTTAGTCCGGATATAGTC
1 CGGGACTTAG-CCAGATATAGCT-ACTCGCACAAATGCCTTCGAGA-CTTAGCCCGGATATAGTA
47604337 ACTAGCACAAAAGCCTTCGGGACTTA
63 ACTAGCACAAAAGCCTTCGGGACTTA
47604363 CCCCGGATAT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
90 12 0.16
91 64 0.84
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (90 bp):
CGGGACTTAGCCAGATATAGCTACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACT
AGCACAAAAGCCTTCGGGACTTAGC
Found at i:47612468 original size:40 final size:40
Alignment explanation
Indices: 47612352--47612527 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
47612342 ACCCAAGTAT
*
47612352 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
47612391 CTTCGGGTC-TAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
47612430 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
47612470 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
47612510 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
47612528 TTATCATCCG
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 4 0.03
39 43 0.36
40 69 0.58
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:47612502 original size:80 final size:78
Alignment explanation
Indices: 47612352--47612527 Score: 248
Period size: 80 Copynumber: 2.2 Consensus size: 78
47612342 ACCCAAGTAT
* *
47612352 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTAGCCCGGATATAGCA
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACTAGCCCGGATATAGCA
47612416 ACTCGCACAAATGC
65 ACTCGCACAAATGC
*
47612430 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGAC-TAGCCCGGATATAG
*
47612494 CAACTCGCACGAATGC
63 CAACTCGCACAAATGC
*
47612510 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
47612528 TTATCATCCG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
77 1 0.01
78 11 0.12
79 30 0.34
80 46 0.52
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (78 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACTAGCCCGGATATAGCAA
CTCGCACAAATGC
Found at i:47620351 original size:40 final size:40
Alignment explanation
Indices: 47620274--47620410 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 40
47620264 ACCCAAGTAT
*
47620274 CTTCGGGAT-TTAG-CCGGATATAACAACTTGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTAGCACAAATGC
* *
47620313 CTTCGGGTCTTAGCCCGAATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTAGCACAAATGC
* * * * *
47620353 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
* *
47620393 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
47620411 TTATCATCCG
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.15
40 66 0.82
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
Found at i:47623660 original size:25 final size:26
Alignment explanation
Indices: 47623632--47623682 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
47623622 AATATTGTAT
* * *
47623632 ATAATTTTTAT-TAATAATTTTAATA
1 ATAATTTATATATAAAAATTTGAATA
47623657 ATAATTTATATATAAAAATTTGAATA
1 ATAATTTATATATAAAAATTTGAATA
47623683 TAAAAGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
ATAATTTATATATAAAAATTTGAATA
Found at i:47623685 original size:25 final size:24
Alignment explanation
Indices: 47623630--47623685 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
47623620 GTAATATTGT
* * *
47623630 ATATAATTTTTATTAATAATTTTA
1 ATATAATTTATATTAAAAATTTGA
47623654 ATAATAATTTATATATAAAAATTTGA
1 AT-ATAATTTATAT-TAAAAATTTGA
47623680 ATATAA
1 ATATAA
47623686 AAGTTATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.07
25 14 0.52
26 11 0.41
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATAATTTATATTAAAAATTTGA
Found at i:47623779 original size:69 final size:72
Alignment explanation
Indices: 47623663--47623800 Score: 160
Period size: 69 Copynumber: 2.0 Consensus size: 72
47623653 AATAATAATT
* * * *
47623663 TATATATAAAAATTTGAATATAAAAGTTATTAATTCAAATTTTTTAAT-TTG-A-ACTTTTTAAA
1 TATATATAAAAATTTGAATATAAAAGTTATAAATACAAAATTATTAATATTGTATACTTTTTAAA
47623725 ATTTGAA
66 ATTTGAA
* *
47623732 TATATATAAAAATTATTAATA-AAAATTTA-AAATACTAAAATTATTAATATTGTATACTTTTTA
1 TATATATAAAAATT-TGAATATAAAAGTTATAAATAC-AAAATTATTAATATTGTATACTTTTTA
*
47623795 GAATTT
64 AAATTT
47623801 TTAAATAATG
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
68 4 0.07
69 31 0.54
70 8 0.14
71 1 0.02
72 13 0.23
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (72 bp):
TATATATAAAAATTTGAATATAAAAGTTATAAATACAAAATTATTAATATTGTATACTTTTTAAA
ATTTGAA
Found at i:47623994 original size:17 final size:19
Alignment explanation
Indices: 47623957--47623997 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
47623947 TTTTTATATT
*
47623957 TTTTAAAGAATATTGATTA
1 TTTTAAAGAATATTGAATA
47623976 TTTTAAA-AA-ATTGAATA
1 TTTTAAAGAATATTGAATA
47623993 TTTTA
1 TTTTA
47623998 TGCTGATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
18 2 0.10
19 7 0.33
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (19 bp):
TTTTAAAGAATATTGAATA
Found at i:47625314 original size:37 final size:37
Alignment explanation
Indices: 47625264--47625335 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
47625254 CATACTTGCA
47625264 CACAAACTTAAATTAAAACTCAATAAACAAATCATAT
1 CACAAACTTAAATTAAAACTCAATAAACAAATCATAT
47625301 CACAAACTTAAATTAAAACTCAATAAACAAATCAT
1 CACAAACTTAAATTAAAACTCAATAAACAAATCAT
47625336 TCTTTCGATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24
Consensus pattern (37 bp):
CACAAACTTAAATTAAAACTCAATAAACAAATCATAT
Found at i:47627149 original size:21 final size:23
Alignment explanation
Indices: 47627119--47627160 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
47627109 ATAAAATATA
47627119 TATTAGATTAAATTAA-ATTTTG
1 TATTAGATTAAATTAAGATTTTG
*
47627141 TATTA-ATTAATTTAAGATTT
1 TATTAGATTAAATTAAGATTT
47627161 CAGTAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (23 bp):
TATTAGATTAAATTAAGATTTTG
Found at i:47634298 original size:40 final size:40
Alignment explanation
Indices: 47634212--47634437 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
47634202 TAGAATGATG
* * * *
47634212 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
47634252 TTCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
47634292 TCCGGACTAAGATCCGAAGGCATTTGTGCCAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
47634332 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* **
47634372 TCTGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
47634413 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
47634438 AATGAGTAGC
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 154 0.94
41 9 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47640739 original size:27 final size:28
Alignment explanation
Indices: 47640709--47640778 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
47640699 ATAATAAGTC
*
47640709 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
47640736 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
47640764 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47640779 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:47648653 original size:27 final size:28
Alignment explanation
Indices: 47648623--47648692 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
47648613 ATAATAAGTC
*
47648623 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
47648650 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
47648678 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47648693 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:47651231 original size:20 final size:20
Alignment explanation
Indices: 47651206--47651276 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
47651196 TTTTGATAAA
*
47651206 ACATGATATGTATGACATGC
1 ACATGATATGTATGATATGC
*
47651226 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
47651246 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
47651266 ACATGAGATGT
1 ACATGATATGT
47651277 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:47651390 original size:46 final size:47
Alignment explanation
Indices: 47651323--47651419 Score: 151
Period size: 48 Copynumber: 2.1 Consensus size: 47
47651313 AGGAAGTGCA
* *
47651323 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
*
47651369 AAAGGGCTTATGCCCCAGTTATCAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAAGGGCTTATGCCCCAGTTATT
47651417 AAA
1 AAA
47651420 AGAGGCTAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 22 0.48
48 24 0.52
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
Found at i:47651426 original size:25 final size:24
Alignment explanation
Indices: 47651322--47651439 Score: 152
Period size: 23 Copynumber: 4.9 Consensus size: 24
47651312 GAGGAAGTGC
47651322 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47651346 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47651369 -AAAGGGCTTATGCCCCAGTTATCA
1 AAAAGGGCTTATGCCCCAGTTAT-T
*
47651393 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47651417 AAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAG-GGCTTATGCC-CCAGTTA
47651440 CATGATAAAG
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 43 0.52
24 9 0.11
25 31 0.37
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:47654743 original size:31 final size:30
Alignment explanation
Indices: 47654708--47654770 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
47654698 CCTTTTCATG
47654708 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCAT-TTCCATAACACTGGGCCGAAGCCT
* **
47654739 TTTCATTTTCATATTACTGGGCCGAAGCCT
1 TTTCATTTCCATAACACTGGGCCGAAGCCT
47654769 TT
1 TT
47654771 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 23 0.79
31 6 0.21
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCATTTCCATAACACTGGGCCGAAGCCT
Found at i:47655013 original size:24 final size:24
Alignment explanation
Indices: 47654962--47655104 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
47654952 GCTTTATCAT
*
47654962 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
47654987 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
47655011 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
47655034 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
47655058 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
47655082 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47655105 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47655041 original size:47 final size:48
Alignment explanation
Indices: 47654962--47655103 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
47654952 GCTTTATCAT
* *
47654962 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
47655011 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
47655058 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
47655104 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:47655062 original size:71 final size:72
Alignment explanation
Indices: 47654961--47655104 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
47654951 TGCTTTATCA
*
47654961 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
47655026 GCCCTTT
66 GCCCTTT
* * **
47655033 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
47655096 AGCCCTTT
65 AGCCCTTT
47655104 T
1 T
47655105 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:47655179 original size:20 final size:20
Alignment explanation
Indices: 47655154--47655214 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
47655144 TTATGATTAC
47655154 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
47655174 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
47655194 GTAATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
47655214 A
1 A
47655215 CCATATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47655289 original size:25 final size:25
Alignment explanation
Indices: 47655257--47655304 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47655247 ATACATAAAC
* * *
47655257 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
47655282 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
47655305 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:47657526 original size:15 final size:15
Alignment explanation
Indices: 47657503--47657562 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
47657493 GCATTGTATC
*
47657503 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
47657518 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * *
47657533 CTAGG-TTTCTCTATC
1 -TTGGATTTCTTTATT
*
47657548 TTGGATTTATTTATT
1 TTGGATTTCTTTATT
47657563 CGGTTTTCTT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
14 3 0.09
15 29 0.83
16 3 0.09
ACGTcount: A:0.13, C:0.10, G:0.15, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:47657542 original size:30 final size:30
Alignment explanation
Indices: 47657506--47657563 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
47657496 TTGTATCTTG
* * *
47657506 GGTTTCTTTATTTTGGATTTCTTTATTCTA
1 GGTTTCTCTATCTTGGATTTATTTATTCTA
47657536 GGTTTCTCTATCTTGGATTTATTTATTC
1 GGTTTCTCTATCTTGGATTTATTTATTC
47657564 GGTTTTCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.14, C:0.12, G:0.14, T:0.60
Consensus pattern (30 bp):
GGTTTCTCTATCTTGGATTTATTTATTCTA
Found at i:47659619 original size:47 final size:47
Alignment explanation
Indices: 47659540--47659659 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 47
47659530 GAATTATGGG
* *
47659540 GCATCCGAACTCATTGAGTTGTGTTCCAAGTTCACCTATGGATGC-AA
1 GCATCCGAACTCGTTGAGTTGTGTTCCAAGTTCA-CTATAGATGCGAA
** *
47659587 GCATCCGAACTCGTTGAGTTGTGTTCTGAGTTCATTATAGATGCGAA
1 GCATCCGAACTCGTTGAGTTGTGTTCCAAGTTCACTATAGATGCGAA
* *
47659634 -CA-CCTGAGCTCGTTGAGTTGCGTTCC
1 GCATCC-GAACTCGTTGAGTTGTGTTCC
47659660 GGGTTCATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
45 2 0.03
46 28 0.44
47 33 0.52
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.32
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGTGTTCCAAGTTCACTATAGATGCGAA
Found at i:47659649 original size:46 final size:46
Alignment explanation
Indices: 47659540--47659670 Score: 149
Period size: 46 Copynumber: 2.8 Consensus size: 46
47659530 GAATTATGGG
* * * *
47659540 GCATCCGAACTCATTGAGTTGTGTTCCAAGTTCACCTATGGATGCAA
1 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCA-TTATAGATGCAA
*
47659587 GCATCCGAACTCGTTGAGTTGTGTTCTGAGTTCATTATAGATGCGAA
1 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATAGATGC-AA
* * *
47659634 -CA-CCTGAGCTCGTTGAGTTGCGTTCCGGGTTCATTAT
1 GCATCC-GAACTCGTTGAGTTGTGTTCCGAGTTCATTAT
47659671 GGGTGAGATT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
45 2 0.03
46 38 0.52
47 33 0.45
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATAGATGCAA
Found at i:47663322 original size:43 final size:42
Alignment explanation
Indices: 47663232--47663345 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 42
47663222 TTACATACTG
* * * * *
47663232 ATGCCACTATCCCAGACAGGGTCTTACACGAAATAGATTAATG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAATAGA-TAATA
*
47663275 ATGCCGAA-GTCCCAAACATGGTCTTACACGAAATTG-TAATACA
1 ATGCC-AATGTCCCAAACATGGTCTTACACGAAATAGATAAT--A
*
47663318 ATGCCAATGTCCCAAACATGTTCTTACA
1 ATGCCAATGTCCCAAACATGGTCTTACA
47663346 TGTAATCACA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
41 4 0.07
42 2 0.03
43 53 0.88
44 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGAAATAGATAATA
Found at i:47673033 original size:7 final size:7
Alignment explanation
Indices: 47673023--47673077 Score: 110
Period size: 7 Copynumber: 7.9 Consensus size: 7
47673013 ATAAATATTA
47673023 AATAAAG
1 AATAAAG
47673030 AATAAAG
1 AATAAAG
47673037 AATAAAG
1 AATAAAG
47673044 AATAAAG
1 AATAAAG
47673051 AATAAAG
1 AATAAAG
47673058 AATAAAG
1 AATAAAG
47673065 AATAAAG
1 AATAAAG
47673072 AATAAA
1 AATAAA
47673078 TTAGTAATGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.15
Consensus pattern (7 bp):
AATAAAG
Found at i:47678417 original size:67 final size:67
Alignment explanation
Indices: 47678323--47678498 Score: 282
Period size: 67 Copynumber: 2.6 Consensus size: 67
47678313 GAACAGATAT
* * *
47678323 ATATATGTGGCGAA-GCCACTAGATTGCAGCGAGGCTTCCAGATATTGTGACGAAGTCACCAGAA
1 ATATATGTGGC-AAGGCCACCAGATTGCAGCGAGGCTGCCAGATACTGTGACGAAGTCACCAGAA
47678387 CAG
65 CAG
47678390 ATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCTGCCAGATACTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCTGCCAGATACTGTGACGAAGTCACCAGAAC
47678455 AG
66 AG
** *
47678457 ATATATGTGGTGAGGCCACCAGATTGCAGTGAGGCTGCCAGA
1 ATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCTGCCAGA
47678499 ACGCTTCCTC
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
66 2 0.02
67 100 0.98
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
ATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCTGCCAGATACTGTGACGAAGTCACCAGAAC
AG
Found at i:47679150 original size:27 final size:27
Alignment explanation
Indices: 47679120--47679178 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
47679110 TACTCTCTAG
*
47679120 GGGTAAATCGGT-AGTCTTACCTTACAA
1 GGGTAAATCGGTAATTC-TACCTTACAA
**
47679147 GGGTATTTCGGTAATTCTACCTTACAA
1 GGGTAAATCGGTAATTCTACCTTACAA
47679174 GGGTA
1 GGGTA
47679179 TTTCTGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (27 bp):
GGGTAAATCGGTAATTCTACCTTACAA
Found at i:47679179 original size:27 final size:27
Alignment explanation
Indices: 47679137--47679189 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
47679127 TCGGTAGTCT
47679137 TACCTTACAAGGGTATTTCGGTAATTC
1 TACCTTACAAGGGTATTTCGGTAATTC
*
47679164 TACCTTACAAGGGTATTTCTGTAATT
1 TACCTTACAAGGGTATTTCGGTAATT
47679190 TTGTAAATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (27 bp):
TACCTTACAAGGGTATTTCGGTAATTC
Found at i:47679203 original size:27 final size:27
Alignment explanation
Indices: 47679173--47679273 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 27
47679163 CTACCTTACA
*
47679173 AGGGTATTTCTGTAATTTTGTAAATCG
1 AGGGTATTTCTGTAATTTTATAAATCG
*** * *
47679200 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTATTTCTGTAATTTTATAAATCG
* *
47679227 AGGGTATTT-TGGTAATTTTACAAA-CC
1 AGGGTATTTCT-GTAATTTTATAAATCG
47679253 AGGGGTATTT-TGGTAATTTTA
1 A-GGGTATTTCT-GTAATTTTA
47679274 CAAACTAGGG
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 2 0.03
27 57 0.97
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCTGTAATTTTATAAATCG
Found at i:47679269 original size:54 final size:54
Alignment explanation
Indices: 47679211--47679330 Score: 152
Period size: 54 Copynumber: 2.2 Consensus size: 54
47679201 GGGTAAAACA
* * *
47679211 GTAATTCTATAAATCGA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTCTACAAA-CGAGGGGTATTTTGGTAATTTTACAAAACAAGGGTATTTTG
* * * *
47679265 GTAATTTTACAAACTAGGGGTATTTTGGTAGTTTTACAAAATAAGGGTATTTTG
1 GTAATTCTACAAACGAGGGGTATTTTGGTAATTTTACAAAACAAGGGTATTTTG
*
47679319 GTAATTTTACAA
1 GTAATTCTACAA
47679331 CTTATCCACT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.03
54 56 0.97
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GTAATTCTACAAACGAGGGGTATTTTGGTAATTTTACAAAACAAGGGTATTTTG
Found at i:47679274 original size:27 final size:27
Alignment explanation
Indices: 47679228--47679330 Score: 170
Period size: 27 Copynumber: 3.8 Consensus size: 27
47679218 TATAAATCGA
*
47679228 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
47679255 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
47679282 GGGTATTTTGGTAGTTTTACAAAATAA
1 GGGTATTTTGGTAATTTTACAAACTAG
47679309 GGGTATTTTGGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
47679331 CTTATCCACT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:47681597 original size:49 final size:49
Alignment explanation
Indices: 47681523--47681666 Score: 182
Period size: 49 Copynumber: 2.9 Consensus size: 49
47681513 GCCGAAGCTA
* *
47681523 TCTGGTACGCATAGTAGCCTACACTTAGAACTACACATGCGACCAACAG-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * * * *
47681572 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
*
47681621 TTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TCT-G-GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
47681667 TCACAATAGA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
48 4 0.05
49 39 0.49
50 1 0.01
51 35 0.44
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:47685642 original size:167 final size:167
Alignment explanation
Indices: 47685363--47685685 Score: 488
Period size: 167 Copynumber: 1.9 Consensus size: 167
47685353 CAAAATCATG
* * * *
47685363 CTGACTCTGTCTCACAAAAATCCAATTGTCATATAATATGAAATTCTTTTTCCTTCGATGTTTCT
1 CTGACTCTGTCTCACAAAAATCCAATTATCACAGAATATGAAATTCTTTTGCCTTCGATGTTTCT
* * * * *
47685428 TTTATGAGAACATAAAGTCATTAAGATTTAATTTCATATATTGTTCAACCTCAAATTCAATTTCT
66 TTGATGAGAAAATAAACTAATTAAGATTTAATTTAATATATTGTTCAACCTCAAATTCAATTTCT
47685493 ACCATTTTTGATGATTTTTCAAAGTCACACAACCATT
131 ACCATTTTTGATGATTTTTCAAAGTCACACAACCATT
47685530 CTGACTCTGTCTCACAAAAATCCAATTATCACAGAATATGAAATTCTTTTGCCTTC-ATCGTTTC
1 CTGACTCTGTCTCACAAAAATCCAATTATCACAGAATATGAAATTCTTTTGCCTTCGAT-GTTTC
* * * *
47685594 TTTGATGATAAAATAGACTAATTAAGCTTTAATTTAATATCA-TGTTCAACCTCTAATTCAATTT
65 TTTGATGAGAAAATAAACTAATTAAGATTTAATTTAATAT-ATTGTTCAACCTCAAATTCAATTT
*
47685658 CTACCATTTTTGGTGATTTTTCAAAGTC
129 CTACCATTTTTGATGATTTTTCAAAGTC
47685686 CAAAATTGCT
Statistics
Matches: 140, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
166 2 0.01
167 137 0.98
168 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.41
Consensus pattern (167 bp):
CTGACTCTGTCTCACAAAAATCCAATTATCACAGAATATGAAATTCTTTTGCCTTCGATGTTTCT
TTGATGAGAAAATAAACTAATTAAGATTTAATTTAATATATTGTTCAACCTCAAATTCAATTTCT
ACCATTTTTGATGATTTTTCAAAGTCACACAACCATT
Found at i:47686032 original size:50 final size:50
Alignment explanation
Indices: 47685946--47686290 Score: 302
Period size: 50 Copynumber: 6.9 Consensus size: 50
47685936 ACTGAAGCTC
** * *
47685946 TCTGGTATGCATAGTAGACTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * * * *
47685996 TCTAGTACACGTAGTAGCTTGTACTTAGTACTACACACATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* ** *
47686046 TCTGATACA-AGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA
1 TCTGGTACACA-TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* ** ***
47686098 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
47686147 TTTGGTACACAAAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--A-TCAA
* * * *
47686199 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
47686248 TATGGTACACGTAGTAGCCTGCACTCAGTACTTCACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
47686291 TCATAATGAA
Statistics
Matches: 226, Mismatches: 59, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
49 7 0.03
50 143 0.63
51 70 0.31
52 6 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:47686123 original size:51 final size:51
Alignment explanation
Indices: 47686057--47686234 Score: 216
Period size: 51 Copynumber: 3.5 Consensus size: 51
47686047 CTGATACAAG
*
47686057 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTACGCA
*** ** * ** *
47686108 TAGTAGCCTGCACTTAGTACTACACATACGA-CCTA-TCAATTTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTACGCA
* **
47686158 AAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTTAACGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTACGCA
47686209 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
47686235 TGCGACCTAT
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
49 3 0.03
50 35 0.34
51 61 0.60
52 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTACGCA
Found at i:47686163 original size:101 final size:101
Alignment explanation
Indices: 47686058--47686289 Score: 383
Period size: 101 Copynumber: 2.3 Consensus size: 101
47686048 TGATACAAGT
*
47686058 AGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTATGCATAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTACGCATAGTAGCCTGCACTT
*
47686123 AGTACTACACATACGACCTATCAATTTGGTACACAA
66 AGTACTACACATACGACCTATCAATATGGTACACAA
**
47686159 AGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTTAACGGGTACGCATAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTACGCATAGTAGCCTGCACTT
* **
47686224 AGTACTACACATGCGACCTATCAATATGGTACACGT
66 AGTACTACACATACGACCTATCAATATGGTACACAA
* *
47686260 AGTAGCCTGCACTCAGTACTTCACACGTGA
1 AGTAGCCTGCACTTAGTACTACACACGTGA
47686290 CTCATAATGA
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 122 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (101 bp):
AGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTACGCATAGTAGCCTGCACTT
AGTACTACACATACGACCTATCAATATGGTACACAA
Found at i:47686263 original size:151 final size:151
Alignment explanation
Indices: 47685955--47686284 Score: 344
Period size: 151 Copynumber: 2.2 Consensus size: 151
47685945 CTCTGGTATG
* ** ** * *
47685955 CATAGTAGACTGCACTTAGTACTACACATGTGACCTATCAATCTAGTACACGTAGTAGCTTGTAC
1 CATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTAGTACACAAAGTAGCCTGCAC
* *
47686020 TTAGTACTACACACATGACTTAACCATCTGATACAAGTAGTAGCCTGCACTTAGTACTACACACG
66 TTAGTACTACACACATGACTTAACCAACGGATACAAGTAGTAGCCTGCACTTAGTACTACACACG
* * * **
47686085 TGATCAAAGTTAACGGGTATG
131 CGATCAAAGTCAAAGGGTACA
* *
47686106 CATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATTTGGTACACAAAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTAGTACACAAAGTAGCCTGCAC
* ** * *
47686171 TTAGTACTACACACGTGA-TTGAAGTTAACGGGTACGCA-TAGTAGCCTGCACTTAGTACTACAC
66 TTAGTACTACACACATGACTT-AA-CCAACGGATAC-AAGTAGTAGCCTGCACTTAGTACTACAC
* ** *
47686234 ATGCGA-CCTA-TCAATATGGTACA
128 ACGCGATCAAAGTCAA-AGGGTACA
* * *
47686257 CGTAGTAGCCTGCACTCAGTACTTCACA
1 CATAGTAGCCTGCACTTAGTACTACACA
47686285 CGTGACTCAT
Statistics
Matches: 147, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
150 5 0.03
151 106 0.72
152 35 0.24
153 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (151 bp):
CATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTAGTACACAAAGTAGCCTGCAC
TTAGTACTACACACATGACTTAACCAACGGATACAAGTAGTAGCCTGCACTTAGTACTACACACG
CGATCAAAGTCAAAGGGTACA
Found at i:47689273 original size:16 final size:16
Alignment explanation
Indices: 47689254--47689285 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
47689244 AATTGTTTTA
47689254 TTACAGAATTTCACTT
1 TTACAGAATTTCACTT
*
47689270 TTACATAATTTCACTT
1 TTACAGAATTTCACTT
47689286 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (16 bp):
TTACAGAATTTCACTT
Found at i:47690690 original size:42 final size:41
Alignment explanation
Indices: 47690640--47690746 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 41
47690630 GATCCCTCTA
* *
47690640 TCCCAGACAGGGTCTTACACGAAA-TCAGATATGATG-CTGATG
1 TCCCAGACACGGTCTTACACGAAACTCA-AT-TGAGGCCTG-TG
* *
47690682 TCCCAGACATGGTCTTATACGTAAATCTCAATTGAGGCCTGTG
1 TCCCAGACACGGTCTTACACG-AAA-CTCAATTGAGGCCTGTG
*
47690725 TCCCAAACACGGTCTTACACGA
1 TCCCAGACACGGTCTTACACGA
47690747 TGTCTCAGAC
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
42 20 0.36
43 27 0.49
44 5 0.09
45 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (41 bp):
TCCCAGACACGGTCTTACACGAAACTCAATTGAGGCCTGTG
Found at i:47692024 original size:43 final size:43
Alignment explanation
Indices: 47691970--47692051 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
47691960 TTCGTCCCCG
* *
47691970 AAAATTTTACTGTTAAATAGATTCGGATATTGTTGTCTCCTCA
1 AAAAATTTACTGTTAAATAGATTCAGATATTGTTGTCTCCTCA
*
47692013 AAAAATTTACTGTTAAATAGATTCAGATGTTGTTGTCTC
1 AAAAATTTACTGTTAAATAGATTCAGATATTGTTGTCTC
47692052 ATTGAATCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (43 bp):
AAAAATTTACTGTTAAATAGATTCAGATATTGTTGTCTCCTCA
Found at i:47695670 original size:13 final size:13
Alignment explanation
Indices: 47695652--47695676 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47695642 GTGGCCAGAC
47695652 ATTAAAATTTTCG
1 ATTAAAATTTTCG
47695665 ATTAAAATTTTC
1 ATTAAAATTTTC
47695677 ACAAAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTAAAATTTTCG
Found at i:47697203 original size:22 final size:22
Alignment explanation
Indices: 47697173--47697254 Score: 92
Period size: 22 Copynumber: 3.7 Consensus size: 22
47697163 AAGTCAACAA
* *
47697173 GACGGCTCAATACCGTAGACAG
1 GACGACTCAATGCCGTAGACAG
* *
47697195 GACGACTCAACGCCGTAGATAG
1 GACGACTCAATGCCGTAGACAG
* *
47697217 GATGACTCAATGTCGTAGACAG
1 GACGACTCAATGCCGTAGACAG
* *
47697239 GACGACTAAAGGCCGT
1 GACGACTCAATGCCGT
47697255 CAATATCGCA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.32, C:0.24, G:0.28, T:0.16
Consensus pattern (22 bp):
GACGACTCAATGCCGTAGACAG
Found at i:47700549 original size:39 final size:39
Alignment explanation
Indices: 47700480--47700649 Score: 196
Period size: 39 Copynumber: 4.3 Consensus size: 39
47700470 GTATGAGATT
* * * * *
47700480 GAAAATATATCCAGATATGAGGTCCACAGGCTATATGCTG
1 GAAAA-ATATCCGGACATGAGATCCGCAGGCTATATGCTA
*
47700520 GAAAAATATCCGGACACGAGATCCGCAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
* * *
47700559 GAAATATATTCGGACATGAGATCCACAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
* * * ** *
47700598 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTG
1 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
47700637 GAAAAATATCCGG
1 GAAAAATATCCGG
47700650 GTTAAAGACC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 107 0.96
40 5 0.04
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (39 bp):
GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
Found at i:47700663 original size:78 final size:78
Alignment explanation
Indices: 47700503--47700675 Score: 197
Period size: 78 Copynumber: 2.2 Consensus size: 78
47700493 GATATGAGGT
* * *
47700503 CCACAGGCTATATGCTGGAAAAATATCCGGACACGAGATCCGCAGGCTATATGCTAGAAATATAT
1 CCACAGGCTATATGCTAGAAAAATATCCGGACACGAGATCCGCAGGCTACATGCTAGAAAAATAT
* * *
47700568 TCGGACATGAGAT
66 CCGGACATAAGAC
* ** * * *
47700581 CCACAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATAT
1 CCACAGGCTATATGCTAGAAAAATATCCGGACACGAGATCCGCAGGCTACATGCTAGAAAAATAT
**
47700646 CCGG-GTTAAAGAC
66 CCGGACAT-AAGAC
47700659 CCACAGGCT-TATGCTAG
1 CCACAGGCTATATGCTAG
47700676 TAATGTATTC
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
77 9 0.11
78 71 0.89
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (78 bp):
CCACAGGCTATATGCTAGAAAAATATCCGGACACGAGATCCGCAGGCTACATGCTAGAAAAATAT
CCGGACATAAGAC
Found at i:47709896 original size:40 final size:40
Alignment explanation
Indices: 47709830--47709996 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
47709820 AAATTGAATG
* * *
47709830 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
47709869 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
47709909 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
47709949 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
47709989 ATATCCGG
1 ATATCCGG
47709997 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:47717911 original size:40 final size:40
Alignment explanation
Indices: 47717852--47717993 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
47717842 AAATTGAATG
* * *
47717852 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
47717892 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
47717932 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
47717972 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
47717994 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:47717994 original size:40 final size:39
Alignment explanation
Indices: 47717891--47718019 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
47717881 TGCTGGAAAT
* * *
47717891 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
47717931 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
47717971 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
47718011 TATATCCGG
1 TATATCCGG
47718020 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:47719743 original size:39 final size:39
Alignment explanation
Indices: 47719698--47719854 Score: 215
Period size: 39 Copynumber: 4.0 Consensus size: 39
47719688 AATATGTCCA
* * *
47719698 GACATGAGGTACGCAGGCTATATGCTGGAAAAATATCCG
1 GACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCG
*
47719737 GACATGAGATCCGCAGGCTATATGCTAGAAATATATCCG
1 GACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCG
* *
47719776 GACATGAGATTCGCAGGCTATATGCTAGAAATATATCCG
1 GACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCG
* * ** *
47719815 GACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCG
1 GACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCG
47719854 G
1 G
47719855 GTTAAAGACC
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (39 bp):
GACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCG
Found at i:47719871 original size:78 final size:78
Alignment explanation
Indices: 47719711--47719880 Score: 191
Period size: 78 Copynumber: 2.2 Consensus size: 78
47719701 ATGAGGTACG
* * *
47719711 CAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAATATATCCG
1 CAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAGGCTACATGCTAGAAAAATATCCG
* ** *
47719776 GACATGAGATTCG
66 GACATAAGACCCA
* * * * *
47719789 CAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCG
1 CAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAGGCTACATGCTAGAAAAATATCCG
**
47719854 G-GTTAAAGACCCA
66 GACAT-AAGACCCA
47719867 CAGGCT-TATGCTAG
1 CAGGCTATATGCTAG
47719881 TAATGTATTC
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
77 9 0.12
78 68 0.88
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (78 bp):
CAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAGGCTACATGCTAGAAAAATATCCG
GACATAAGACCCA
Found at i:47723038 original size:40 final size:40
Alignment explanation
Indices: 47722950--47723167 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
47722940 CCAAGTATCA
* ** * *
47722950 TCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCT
1 TCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCT
* * * *
47722988 TCAGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCT
1 TCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCT
* *
47723028 TCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCT
* *
47723068 TCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCT
* * * *
47723108 TC-GGATCTTAGTCCGGATATAGTCACCAGCATAAAAGCCT
1 TCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGCCT
47723148 TCGGGACTTAGCCCGGATAT
1 TCGGGACTTAGCCCGGATAT
47723168 CATTCGAATA
Statistics
Matches: 148, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
38 8 0.05
39 18 0.12
40 118 0.80
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCT
Found at i:47726356 original size:27 final size:28
Alignment explanation
Indices: 47726300--47726369 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
47726290 AAATTTGTAC
47726300 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
47726328 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
47726355 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
47726370 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:47726380 original size:27 final size:27
Alignment explanation
Indices: 47726300--47726381 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
47726290 AAATTTGTAC
* *
47726300 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
47726328 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
47726355 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
47726382 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:47729278 original size:40 final size:40
Alignment explanation
Indices: 47729199--47729375 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
47729189 CGGATGATAA
* * * * *
47729199 CCGGACTAAGATCCGAAGGCATTCGTGCAAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
47729239 CCGGGCTATGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
47729279 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
47729319 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
47729359 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
47729376 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 100 0.85
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:47729643 original size:22 final size:22
Alignment explanation
Indices: 47729603--47729644 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
47729593 GAATGTGCAT
*
47729603 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
47729625 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
47729645 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:47731085 original size:39 final size:39
Alignment explanation
Indices: 47731040--47731157 Score: 200
Period size: 39 Copynumber: 3.0 Consensus size: 39
47731030 AAGCAAGACA
*
47731040 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
47731079 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
47731118 CTGGAAATGTATCCGGGCTAAAGTCCCGGAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
47731157 C
1 C
47731158 GGTAACATAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:47737790 original size:39 final size:39
Alignment explanation
Indices: 47737745--47737864 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
47737735 AAGCAAGACA
*
47737745 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
47737784 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
47737823 CT-GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
47737861 CTGG
1 CTGG
47737865 TAACATAATT
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
38 37 0.47
39 41 0.53
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:47737838 original size:38 final size:38
Alignment explanation
Indices: 47737748--47737863 Score: 205
Period size: 38 Copynumber: 3.0 Consensus size: 38
47737738 CAAGACACTG
*
47737748 GAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCT
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
47737786 GGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
1 -GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
*
47737825 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCT
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
47737863 G
1 G
47737864 GTAACATAAT
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 38 0.51
39 37 0.49
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (38 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
Found at i:47740034 original size:12 final size:12
Alignment explanation
Indices: 47740017--47740045 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
47740007 GTTCATTGTA
47740017 TGTTTGACTGTT
1 TGTTTGACTGTT
47740029 TGTTTGACTGTT
1 TGTTTGACTGTT
47740041 TGTTT
1 TGTTT
47740046 ATTAAGGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.07, G:0.24, T:0.62
Consensus pattern (12 bp):
TGTTTGACTGTT
Found at i:47742577 original size:40 final size:40
Alignment explanation
Indices: 47742532--47742698 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
47742522 CGGAATGTAA
*
47742532 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
47742572 CCGGATAGAGTAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
47742612 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
47742652 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47742691 CCGGATAT
1 CCGGATAT
47742699 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47749458 original size:19 final size:19
Alignment explanation
Indices: 47749434--47749471 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
47749424 TTACACCGTT
47749434 TCTTCTATGTGAAACTAGA
1 TCTTCTATGTGAAACTAGA
47749453 TCTTCTATGTGAAACTAGA
1 TCTTCTATGTGAAACTAGA
47749472 CTCATTAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (19 bp):
TCTTCTATGTGAAACTAGA
Found at i:47750911 original size:20 final size:18
Alignment explanation
Indices: 47750874--47750924 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
47750864 ACTATAAAAC
47750874 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
47750891 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
47750911 TTACAACTTTACAA
1 TCACAA-TTTACAA
47750925 AAAACCCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:47752217 original size:22 final size:22
Alignment explanation
Indices: 47752198--47752240 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
47752188 ACTTGTGTAG
47752198 GAGGGGCAACACGCCCGTGTGC
1 GAGGGGCAACACGCCCGTGTGC
* *
47752220 GAGGGGCAACATGCCCATGTG
1 GAGGGGCAACACGCCCGTGTG
47752241 GCCATTCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.28, G:0.40, T:0.12
Consensus pattern (22 bp):
GAGGGGCAACACGCCCGTGTGC
Found at i:47760150 original size:51 final size:50
Alignment explanation
Indices: 47760090--47760191 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 50
47760080 ATCTCCTCAA
47760090 GATTCAGGTTTTTCTCCTGCTGGTACTGTGGTTGCTGAAAGCCTGAGAGGG
1 GATTCAGGTTTTTCTCCTGCTGGTACTGTGGTTGCTGAAAGCCTG-GAGGG
47760141 GATTCAGGTTTTTCTCCTGCTGGTACTGTGGTTGCTGAAAGCCTGGAGGG
1 GATTCAGGTTTTTCTCCTGCTGGTACTGTGGTTGCTGAAAGCCTGGAGGG
47760191 G
1 G
47760192 GTGGTGGTCT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 6 0.12
51 45 0.88
ACGTcount: A:0.15, C:0.18, G:0.34, T:0.33
Consensus pattern (50 bp):
GATTCAGGTTTTTCTCCTGCTGGTACTGTGGTTGCTGAAAGCCTGGAGGG
Found at i:47766878 original size:15 final size:15
Alignment explanation
Indices: 47766858--47766910 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
47766848 GTATCTTGGG
47766858 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
47766873 TTTCTTTATTTTGGG
1 TTTCTTTATTCTGGA
*
47766888 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
47766903 TTTCTTTA
1 TTTCTTTA
47766911 CTCAGTTTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
14 1 0.03
15 30 0.97
ACGTcount: A:0.11, C:0.13, G:0.13, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:47766887 original size:30 final size:30
Alignment explanation
Indices: 47766853--47766910 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
47766843 GTATCGTATC
*
47766853 TTGGGTTTCTTTAT-TCTGGATTTCTTTATT
1 TTGGGTTTCTCTATCT-TGGATTTCTTTATT
47766883 TTGGGTTTCTCTATCTTGGATTTCTTTA
1 TTGGGTTTCTCTATCTTGGATTTCTTTA
47766911 CTCAGTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.60
Consensus pattern (30 bp):
TTGGGTTTCTCTATCTTGGATTTCTTTATT
Found at i:47771006 original size:38 final size:40
Alignment explanation
Indices: 47770963--47771174 Score: 229
Period size: 40 Copynumber: 5.3 Consensus size: 40
47770953 AAACCAAGTA
* *
47770963 CCTTCGATA-TTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGAGACTTAGACCGGATATAG-TAACTCGCACAAATG
* *
47771001 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGAGACTTAGACCGGATATAGTAACTCGCACAAATG
* *
47771041 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGAGACTTAGACCGGATA-TAGTAACTCGCACAAATG
* *
47771081 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGAGACTTAGACCGGATA-TAGTAACTCGCACAAATG
* * * *
47771121 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGAGACTTAGACCGGATA-TAGTAACTCGCACAAATG
*
47771161 CCTTCGGGACTTAG
1 CCTTCGAGACTTAG
47771175 CCCGTTATCA
Statistics
Matches: 164, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
38 7 0.04
39 5 0.03
40 152 0.93
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGAGACTTAGACCGGATATAGTAACTCGCACAAATG
Found at i:47771021 original size:40 final size:40
Alignment explanation
Indices: 47770988--47771178 Score: 339
Period size: 40 Copynumber: 4.8 Consensus size: 40
47770978 GGATATAGCT
*
47770988 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
47771028 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
47771068 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
47771108 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
47771148 ACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
47771179 TTATCATCCG
Statistics
Matches: 147, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
40 145 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:47779033 original size:40 final size:40
Alignment explanation
Indices: 47778987--47779186 Score: 300
Period size: 40 Copynumber: 5.0 Consensus size: 40
47778977 TCGGATTTAA
*
47778987 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
**
47779027 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
47779067 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47779107 CCGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAG-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47779145 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
47779185 CC
1 CC
47779187 CGTTATCATC
Statistics
Matches: 147, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
38 4 0.03
39 63 0.43
40 80 0.54
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47780969 original size:56 final size:54
Alignment explanation
Indices: 47780870--47781026 Score: 156
Period size: 56 Copynumber: 2.8 Consensus size: 54
47780860 TTTGATGACA
** * * * *
47780870 TGATACATGCTACATCCGAGAGCTTGTGTAG-CCTCGTTGAGAGGCATGCAATTATCT
1 TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCT-ATTGAGAGGCATG--ATTAT-G
* *
47780927 TG-TACATGCTAGGTCCGGGAGCTTATGTAGCCCTATTAAGAGGCATGGTTATG
1 TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTATTGAGAGGCATGATTATG
* *
47780980 TGATGCATGCTAGGTCCGGGTGCTCTTATGTAGCCCTATTGAGAGGC
1 TGATACATGCTAGGTCCGGGAG--CTTATGTAGCCCTATTGAGAGGC
47781027 GTGCTATGTT
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.02
54 21 0.25
56 57 0.67
57 5 0.06
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (54 bp):
TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTATTGAGAGGCATGATTATG
Found at i:47782895 original size:19 final size:19
Alignment explanation
Indices: 47782867--47782916 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
47782857 CGGCCTGAGG
*
47782867 ACACGAGCGTGTCAAAGGC
1 ACACGGGCGTGTCAAAGGC
47782886 ACACGGGCGTGTCAAAGGC
1 ACACGGGCGTGTCAAAGGC
47782905 ACACGGGCGTGT
1 ACACGGGCGTGT
47782917 GACTCTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.12
Consensus pattern (19 bp):
ACACGGGCGTGTCAAAGGC
Found at i:47784051 original size:46 final size:46
Alignment explanation
Indices: 47783968--47784084 Score: 148
Period size: 46 Copynumber: 2.5 Consensus size: 46
47783958 AAGTCGAAGC
*
47783968 CATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTA-GCCGACG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGGCCGACG
* * * *
47784015 CATGTCCCAGACATGTCTTACATTGGCT-TCCGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAGGCCGACG
47784061 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
47784085 AGCACTCGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 2 0.03
46 47 0.76
47 13 0.21
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGGCCGACG
Found at i:47784095 original size:46 final size:45
Alignment explanation
Indices: 47783913--47784129 Score: 147
Period size: 47 Copynumber: 4.6 Consensus size: 45
47783903 GGGGTAAGGT
* * * * *
47783913 GCCGATGCCATGTCCCAGACACGGTCTTACACTGGC-TTACATATCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACT-GCACT-CGTCTCGA
* * * *
47783960 GTCGAAGCCATGTCCTAGACATGGTCTTACACTG-ACTATCATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGCAC--TCGTCTCG-A
* * *
47784008 GCCGACGCATGTCCCAGACAT-GTCTTACATTGGC-TTCCGTCTCGA
1 GCCGATGCATGTCCCAGACATGGTCTTACACT-GCACT-CGTCTCGA
*
47784053 GGCCGATGCATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAA
1 -GCCGATGCATGTCCCAGACATGGTCTTACACT-GCACTCGTCTCGA
**
47784099 TTTCGATGCCATGTCCCAGACATGGTCTTAC
1 -GCCGATG-CATGTCCCAGACATGGTCTTAC
47784130 GTTAGCTCTC
Statistics
Matches: 138, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
45 2 0.01
46 59 0.43
47 63 0.46
48 14 0.10
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGCACTCGTCTCGA
Found at i:47786833 original size:29 final size:29
Alignment explanation
Indices: 47786748--47786835 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
47786738 GTGAGCATGA
*
47786748 ATAT-AATGTGATTGTA-GCCTAATGGGCC
1 ATATAAATGTGATT-TAGGCCTAATAGGCC
* * *
47786776 ACATAAATGTGATTTTGGCGTAA-AGGGCC
1 ATATAAATGTGATTTAGGCCTAATA-GGCC
47786805 ATATAAATGTGATTTAGGCCTAATAGGCC
1 ATATAAATGTGATTTAGGCCTAATAGGCC
47786834 AT
1 AT
47786836 GTGAATATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
28 4 0.08
29 44 0.90
30 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (29 bp):
ATATAAATGTGATTTAGGCCTAATAGGCC
Found at i:47791374 original size:29 final size:29
Alignment explanation
Indices: 47791290--47791374 Score: 143
Period size: 29 Copynumber: 2.9 Consensus size: 29
47791280 AGCATGAATA
*
47791290 TAATGTGATTTGGGCCTAATGGGCCACAT
1 TAATGTGATTTGGGCCTAATGGGCCATAT
* *
47791319 AAATGTGATTTGGGCCTAAAGGGCCATAT
1 TAATGTGATTTGGGCCTAATGGGCCATAT
47791348 TAATGTGATTTGGGCCTAATGGGCCAT
1 TAATGTGATTTGGGCCTAATGGGCCAT
47791375 GTGAATATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (29 bp):
TAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:47801505 original size:6 final size:6
Alignment explanation
Indices: 47801482--47801603 Score: 97
Period size: 6 Copynumber: 19.8 Consensus size: 6
47801472 TATCAGTACT
* * * *
47801482 AGAATC AAAATG AGAATC AGAATC AGGATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
47801531 AGAATC AGAATC AGAATC AG-GTGAC AGAATT AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
*
47801580 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
47801604 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.04
6 76 0.83
7 9 0.10
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:47801530 original size:31 final size:31
Alignment explanation
Indices: 47801494--47801603 Score: 130
Period size: 31 Copynumber: 3.4 Consensus size: 31
47801484 AATCAAAATG
47801494 AGAATCAGAATCAGGATCAGGTGACAGAATC
1 AGAATCAGAATCAGGATCAGGTGACAGAATC
*
47801525 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATT
1 AGAATCAGAATCAG-----G-ATCAGGTGACAGAATC
* *
47801562 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGATCAGGTGACAGAATC
*
47801593 AAAATCAGAAT
1 AGAATCAGAAT
47801604 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
31 38 0.56
36 1 0.01
37 29 0.43
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGGATCAGGTGACAGAATC
Found at i:47801603 original size:37 final size:37
Alignment explanation
Indices: 47801457--47801603 Score: 166
Period size: 37 Copynumber: 4.2 Consensus size: 37
47801447 TAGCCCATTA
* *
47801457 CAGAATAAGAATCATTATCA-GT-ACTAGAATCAAAAT
1 CAGAATCAGAATCAGTATCAGGTGAC-AGAATCAAAAT
* * *
47801493 GAGAATCAGAATCAGGATCAGGTGACAGAATCAGAAT
1 CAGAATCAGAATCAGTATCAGGTGACAGAATCAAAAT
*
47801530 CAGAATCAGAATCAGAATCAGGTGACAGAAT-----T
1 CAGAATCAGAATCAGTATCAGGTGACAGAATCAAAAT
*
47801562 -AGAATCAGAATCAGTATCAGGTAACAGAATCAAAAT
1 CAGAATCAGAATCAGTATCAGGTGACAGAATCAAAAT
47801598 CAGAAT
1 CAGAAT
47801604 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 9, Indels: 15
0.80 0.08 0.13
Matches are distributed among these distances:
31 28 0.30
32 1 0.01
36 17 0.18
37 46 0.49
38 2 0.02
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (37 bp):
CAGAATCAGAATCAGTATCAGGTGACAGAATCAAAAT
Found at i:47801769 original size:27 final size:26
Alignment explanation
Indices: 47801721--47801780 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
47801711 GCGAGGCTGC
*
47801721 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
47801748 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
47801774 CAAATAT
1 CAGATAT
47801781 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:47801784 original size:2 final size:2
Alignment explanation
Indices: 47801777--47801814 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
47801767 ACCAGAACAA
47801777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47801815 GTGGCGAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47802163 original size:27 final size:27
Alignment explanation
Indices: 47802133--47802542 Score: 466
Period size: 27 Copynumber: 15.2 Consensus size: 27
47802123 TAACACCCTG
* *
47802133 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * * *
47802160 GGGTAAAACAATAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
47802187 GGGTAAAACAGTAATTTTGTAAAACGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
** *
47802214 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
47802241 GGATAAAATAGTAAATT-TGTAAATTGA
1 GGGTAAAATAGT-AATTCTGTAAATCGA
* *
47802268 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
47802295 GGTTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* ** * *
47802322 GTGTAAAACGGTAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
47802349 GGGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
47802376 GGGTAAAATGGTAATTCTATAAATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
47802403 GGGTAAAAT-GATAATTTTGTAAATCGA
1 GGGTAAAATAG-TAATTCTGTAAATCGA
*
47802430 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
47802457 GGGTAAAATAGTAATT-TGGTAAATCGA
1 GGGTAAAATAGTAATTCT-GTAAATCGA
* *
47802484 GGGTAAAATAGTAATTGTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
**
47802511 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
47802538 GGGTA
1 GGGTA
47802543 CTTTGGTAAT
Statistics
Matches: 326, Mismatches: 51, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 6 0.02
27 314 0.96
28 6 0.02
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTGTAAATCGA
Found at i:47802268 original size:81 final size:81
Alignment explanation
Indices: 47802133--47802542 Score: 536
Period size: 81 Copynumber: 5.1 Consensus size: 81
47802123 TAACACCCTG
* * * *
47802133 GGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAATAATTTTGTAAATTGAGGGTAAAACAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAG
* *
47802198 TAATTTTGTAAAACGA
66 TAATTCTGTAAATCGA
* * * * *
47802214 GGGTAAAACGGTAATTTTGTAAATCGAGGATAAAATAGTAAATTTGTAAATTGAGGGTAAAACAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAG
*
47802279 TAATTCTATAAATCGA
66 TAATTCTGTAAATCGA
* * * * ** * *
47802295 GGTTAAAATAGTAATTCTGTAAATTGAGTGTAAAACGGTAATTTTGTAAATCAAGGGTAAAATAG
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAG
* *
47802360 TAATTCTATAAATTGA
66 TAATTCTGTAAATCGA
* *
47802376 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAT-GATAATTTTGTAAATCGAGGGTAAAACA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTTTGTAAATCGAGGGTAAAACA
47802440 GTAATTCTGTAAATCGA
65 GTAATTCTGTAAATCGA
* * * *
47802457 GGGTAAAATAGTAATT-TGGTAAATCGAGGGTAAAATAGTAATTGTATAAATCGAGGGTAAAACG
1 GGGTAAAATGGTAATTCT-GTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACA
47802521 GTAATTCTGTAAATCGA
65 GTAATTCTGTAAATCGA
47802538 GGGTA
1 GGGTA
47802543 CTTTGGTAAT
Statistics
Matches: 285, Mismatches: 41, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.01
81 282 0.99
82 1 0.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAG
TAATTCTGTAAATCGA
Found at i:47802564 original size:27 final size:26
Alignment explanation
Indices: 47802532--47802715 Score: 174
Period size: 27 Copynumber: 6.8 Consensus size: 26
47802522 TAATTCTGTA
*
47802532 AATCGAGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
47802558 AAGTCGAGGGTA-TTTGAGTAATTTTAC
1 AA-TCGAGGGTATTTTG-GTAATTTTAC
* ** *
47802585 AGGTCGAGGGTATTTCAGTAATTTCAC
1 A-ATCGAGGGTATTTTGGTAATTTTAC
47802612 AAATC-AGAGGTATTTTGGTAATTTTAC
1 -AATCGAG-GGTATTTTGGTAATTTTAC
* *
47802639 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATCGA-GGGTATTTTGGTAATTTTAC
* * *
47802666 AAACCAGGGGTATTTTGGTAATTTTAT
1 AATCGA-GGGTATTTTGGTAATTTTAC
* *
47802693 AAACTAAGGGTATTTTGGTAATT
1 AATC-GAGGGTATTTTGGTAATT
47802716 CTACCCTACA
Statistics
Matches: 137, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.08
27 121 0.88
28 5 0.04
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (26 bp):
AATCGAGGGTATTTTGGTAATTTTAC
Found at i:47802734 original size:27 final size:27
Alignment explanation
Indices: 47802704--47802780 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
47802694 AACTAAGGGT
*
47802704 ATTTTGGTAATTCTACCCTACAGGGGC
1 ATTTTAGTAATTCTACCCTACAGGGGC
* *
47802731 ATTTTAGTAATTCTACCCTACAAGGGT
1 ATTTTAGTAATTCTACCCTACAGGGGC
* * *
47802758 ATTTCAGTAATGCTAGCCTACAG
1 ATTTTAGTAATTCTACCCTACAG
47802781 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
ATTTTAGTAATTCTACCCTACAGGGGC
Found at i:47802735 original size:54 final size:54
Alignment explanation
Indices: 47802591--47802742 Score: 164
Period size: 54 Copynumber: 2.8 Consensus size: 54
47802581 TTACAGGTCG
** * * *
47802591 AGGGTATTTCAGTAATT-TCACAAATCAGAGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTCT-ACAAACCAGGGGCATTTTGGTAATTTTACAAACTA
* * * *
47802645 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACTA
1 AGGGTATTTTGGTAATTCTACAAACCAGGGGCATTTTGGTAATTTTACAAACTA
** *
47802699 AGGGTATTTTGGTAATTCTACCCTA-CAGGGGCATTTTAGTAATT
1 AGGGTATTTTGGTAATTCTA-CAAACCAGGGGCATTTTGGTAATT
47802743 CTACCCTACA
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 81 0.96
55 3 0.04
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTCTACAAACCAGGGGCATTTTGGTAATTTTACAAACTA
Found at i:47802768 original size:81 final size:81
Alignment explanation
Indices: 47802591--47802768 Score: 182
Period size: 81 Copynumber: 2.2 Consensus size: 81
47802581 TTACAGGTCG
* * * *
47802591 AGGGTATTTCAGTAATTTCACAAATCAGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 AGGGTATTTCAGTAATTTCACAAATAAGAGGTATTTTGGTAATTCTACAAACTAGGGGCATTTTA
*
47802656 GTAATTTTACAAACCA
66 GTAATTCTACAAACCA
* ** * * **
47802672 GGGGTATTTTGGTAATTTTATAAACTAAG-GGTATTTTGGTAATTCTACCCTAC-AGGGGCATTT
1 AGGGTATTTCAGTAATTTCACAAA-TAAGAGGTATTTTGGTAATTCTA-CAAACTAGGGGCATTT
**
47802735 TAGTAATTCTACCCTA-CA
64 TAGTAATTCTA-CAAACCA
47802753 AGGGTATTTCAGTAAT
1 AGGGTATTTCAGTAAT
47802769 GCTAGCCTAC
Statistics
Matches: 77, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
81 69 0.90
82 8 0.10
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTCACAAATAAGAGGTATTTTGGTAATTCTACAAACTAGGGGCATTTTA
GTAATTCTACAAACCA
Found at i:47804642 original size:6 final size:6
Alignment explanation
Indices: 47804612--47804741 Score: 63
Period size: 6 Copynumber: 21.3 Consensus size: 6
47804602 AAGAAACATT
* * * *
47804612 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGG ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
47804661 ATCAGA ATCAGG ATTAGA ATCA-A ATTAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* *
47804709 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
47804742 GTGAATGCAT
Statistics
Matches: 91, Mismatches: 21, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
5 9 0.10
6 70 0.77
7 9 0.10
8 3 0.03
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:47805009 original size:27 final size:26
Alignment explanation
Indices: 47804962--47805012 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
47804952 CGAAGCTACT
*
47804962 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
47804988 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
47805013 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:47805278 original size:27 final size:27
Alignment explanation
Indices: 47805248--47805656 Score: 478
Period size: 27 Copynumber: 15.2 Consensus size: 27
47805238 AACACCCTAG
* * *
47805248 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
47805275 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
47805302 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
47805329 GGGTAAAATGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** ** * *
47805356 GAATAAAATAGTAATTTTGTAACTCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
47805383 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
47805410 GGGTAAAATAGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
47805437 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
47805464 GGGTAAAACAGTAATTCTATAAACCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
47805491 AGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
47805518 CGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
47805545 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
47805572 GGGTAAAACGGCAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
47805599 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
47805626 -GGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
47805652 GGGTA
1 GGGTA
47805657 CTTTGGTAAT
Statistics
Matches: 326, Mismatches: 55, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.07
27 303 0.93
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:47805363 original size:81 final size:81
Alignment explanation
Indices: 47805248--47805656 Score: 536
Period size: 81 Copynumber: 5.1 Consensus size: 81
47805238 AACACCCTAG
* * *
47805248 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAG
1 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAG
*
47805313 TAATTTTGTAAATCGA
66 TAATTCTGTAAATCGA
** * * *
47805329 GGGTAAAATGATAATTCTATAAATCGAGAATAAAATAGTAATTTTGTAACTCGAGGGTAAAACGG
1 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAG
*
47805394 TAATTCTATAAATCGA
66 TAATTCTGTAAATCGA
* * *
47805410 GGGTAAAAT-AGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
1 GGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACA
* *
47805474 GTAATTCTATAAACCGA
65 GTAATTCTGTAAATCGA
* * *
47805491 AGGTAAAACGATAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACA
1 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAACA
47805555 GTAATTCTGTAAATCGA
65 GTAATTCTGTAAATCGA
* ** * * * * *
47805572 GGGTAAAACGGCAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGA-GGTAAAACGG
1 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAG
*
47805636 TAATTCTGTAAATCAA
66 TAATTCTGTAAATCGA
47805652 GGGTA
1 GGGTA
47805657 CTTTGGTAAT
Statistics
Matches: 290, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
80 31 0.11
81 257 0.89
82 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (81 bp):
GGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAG
TAATTCTGTAAATCGA
Found at i:47805681 original size:27 final size:26
Alignment explanation
Indices: 47805651--47805781 Score: 95
Period size: 27 Copynumber: 4.8 Consensus size: 26
47805641 CTGTAAATCA
47805651 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTA-TTTGGTAATTTTACAAGTCG
* * *
47805678 AGGGTATTTCAGTAAATTTACAGGTCG
1 AGGGTATTT-GGTAATTTTACAAGTCG
* * * * *
47805705 AGGGTATTTCAGTAATTTCAAAAAT-T
1 AGGGTATTT-GGTAATTTTACAAGTCG
* *
47805731 AGGGGTATTTTGGTAATTTTACAA-ACT
1 A-GGGTA-TTTGGTAATTTTACAAGTCG
47805758 AGGGGTATTTTGGTAATTTTACAA
1 A-GGGTA-TTTGGTAATTTTACAA
47805782 ACCAAAGGGT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.05
27 80 0.92
28 3 0.03
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (26 bp):
AGGGTATTTGGTAATTTTACAAGTCG
Found at i:47805782 original size:27 final size:27
Alignment explanation
Indices: 47805706--47805803 Score: 124
Period size: 27 Copynumber: 3.6 Consensus size: 27
47805696 TACAGGTCGA
** * * *
47805706 GGGTATTTCAGTAATTTCAAAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
47805733 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
47805760 GGGTATTTTGGTAATTTTACAAACCAAA
1 GGGTATTTTGGTAATTTTACAAA-CTAG
47805788 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
47805804 CTACCCTACA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 45 0.71
28 18 0.29
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:47805830 original size:27 final size:27
Alignment explanation
Indices: 47805798--47805868 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
47805788 GGGTATTTTG
47805798 GTAATTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
47805825 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGCATTTCA
* *
47805852 GTAATGCTAGCCTACAG
1 GTAATTCTACCCTACAG
47805869 ATATGAGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGCATTTCA
Found at i:47816811 original size:41 final size:41
Alignment explanation
Indices: 47816766--47816883 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
47816756 TGAAAGATAA
47816766 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
47816807 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
47816837 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
47816878 ATGTAG
1 ATGTAG
47816884 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:47816822 original size:71 final size:71
Alignment explanation
Indices: 47816734--47816897 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
47816724 GAGATGTATC
47816734 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
47816799 AGGACA
66 AGGACA
47816805 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
47816870 AGGACA
66 AGGACA
47816876 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
47816898 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:47825922 original size:64 final size:64
Alignment explanation
Indices: 47825842--47826025 Score: 196
Period size: 67 Copynumber: 2.8 Consensus size: 64
47825832 AGACATTATG
* * *
47825842 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
47825906 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
47825971 AA
63 AA
* *
47825973 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGCT-CACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTG-TACACCATGTAG-ACAAGAGAGC
47826026 CGAACTATAT
Statistics
Matches: 99, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:47832469 original size:43 final size:43
Alignment explanation
Indices: 47832424--47832932 Score: 575
Period size: 43 Copynumber: 11.8 Consensus size: 43
47832414 TGTGTTCTCA
** *
47832424 TGTAAGACCACGTCAAGGACGTTGGCATCGATATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* * * *
47832467 TGTAAGACCATGTCTGCGACGTCGGCTTCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* *
47832510 TGTAAGACCACGTCTGAGACGTTGGCATCGATAAGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* *
47832553 TATAAGACC-CTGTCTTGGACAG-TGGCATCGATATGTGATTACG
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACG
* * ** *
47832596 TGTAAGACC-CTATCTGGAACAATGGCATCGATATGTGATTATG
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATGTGATTACG
* * *
47832639 TGTAACACCACGTTTGGGACGTTTGCATC-ATTATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATGTGATTACG
* *
47832682 TGTAAGACGACGTCTGGGACATTGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* **
47832725 TATAAGACCTTGTCTGGGACAG-TGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATATGTGATTACG
* *
47832768 TGTAATACCACGTTTGGGACGTTGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* * *
47832811 TGTAAGACC-CAATCTAGGACAG-TGGCATCGATATGTG-TTCTCG
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATT-ACG
*
47832854 TGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
* *** *
47832897 TGTAAGACCACGTTTAATACGTTGGCATTGATATGT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGT
47832933 TATTCCGATA
Statistics
Matches: 392, Mismatches: 60, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
42 7 0.02
43 378 0.96
44 7 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
Found at i:47836768 original size:27 final size:27
Alignment explanation
Indices: 47836724--47836840 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 27
47836714 TATTGAAATG
* * ***
47836724 CCCTCGACTTGTAAAATTACTAAAGTA
1 CCCTCGATTTATAAAATTACTATTTTA
*
47836751 CCCTCGATTTATAGAATTA-TCATTTTA
1 CCCTCGATTTATAAAATTACT-ATTTTA
* *
47836778 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACTATTTTA
* **
47836805 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACTATTTTA
47836832 CCCTCGATT
1 CCCTCGATT
47836841 GTGAAATTAC
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 77 0.99
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACTATTTTA
Found at i:47836782 original size:54 final size:52
Alignment explanation
Indices: 47836724--47836860 Score: 141
Period size: 54 Copynumber: 2.5 Consensus size: 52
47836714 TATTGAAATG
* * *
47836724 CCCTCGACTTGTAAAATTACTAAAGTACCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGA-TTGTAAAATTACTAAA-TACCCTCGATTTACAAAATTACCATTTTA
* ** *
47836778 CCCTCGATT-TATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTGTA-A-AATTACTA-AATACCCTCGATTTACAAAATTACCATTTTA
*
47836832 CCCTCGATTGTGAAATTACTGAAATACCC
1 CCCTCGATTGTAAAATTACT-AAATACCC
47836861 CCTGTAGGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
52 2 0.03
53 14 0.21
54 50 0.75
55 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.36
Consensus pattern (52 bp):
CCCTCGATTGTAAAATTACTAAATACCCTCGATTTACAAAATTACCATTTTA
Found at i:47836906 original size:27 final size:27
Alignment explanation
Indices: 47836873--47836941 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
47836863 TGTAGGATAG
*
47836873 AATTACCAAAATACCTCTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAA
* *
47836900 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCACTAGTTTGTAA
47836927 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
47836942 CTTGACTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCACTAGTTTGTAA
Done.