Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 164 of 770
Found at i:48453029 original size:25 final size:21
Alignment explanation
Indices: 48452976--48453018 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
48452966 GCTTGATATC
48452976 GATGGATGTATGATATGGTAT
1 GATGGATGTATGATATGGTAT
48452997 GATGGATGTATGATATGGTAT
1 GATGGATGTATGATATGGTAT
48453018 G
1 G
48453019 TATATTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.37
Consensus pattern (21 bp):
GATGGATGTATGATATGGTAT
Found at i:48453034 original size:25 final size:26
Alignment explanation
Indices: 48452976--48453034 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 26
48452966 GCTTGATATC
48452976 GATGGATG-TATGATATGGTATGATG
1 GATGGATGATATGATATGGTATGATG
* * *
48453001 GATGTATGATATGGTAT-GTAT-ATTT
1 GATGGATGATATGATATGGTATGA-TG
48453026 GATGGATGA
1 GATGGATGA
48453035 ACTTTGATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 1 0.04
25 20 0.71
26 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (26 bp):
GATGGATGATATGATATGGTATGATG
Found at i:48454401 original size:25 final size:28
Alignment explanation
Indices: 48454373--48454426 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
48454363 AAAAATTTTT
*
48454373 TAAA-AAAATATT-TATATT-TTTAAGA
1 TAAATAAAATATTATATATTGATTAAGA
48454398 TAAATAAAATATTATATATTGATTAAGA
1 TAAATAAAATATTATATATTGATTAAGA
48454426 T
1 T
48454427 CTATGCAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 4 0.16
26 8 0.32
27 6 0.24
28 7 0.28
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.43
Consensus pattern (28 bp):
TAAATAAAATATTATATATTGATTAAGA
Found at i:48456306 original size:2 final size:2
Alignment explanation
Indices: 48456299--48456323 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
48456289 TTCACCACAA
48456299 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
48456324 AGGTTTGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:48470143 original size:49 final size:50
Alignment explanation
Indices: 48470063--48470294 Score: 290
Period size: 49 Copynumber: 4.7 Consensus size: 50
48470053 ATCTATTGTG
*
48470063 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
48470113 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
48470163 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
48470213 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
48470263 -GGTCGCATGTGTAGTACTAAGTGCA-GCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
48470295 TGCGTACCAG
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
48 7 0.05
49 64 0.41
50 46 0.30
51 38 0.25
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:48470260 original size:101 final size:98
Alignment explanation
Indices: 48470066--48470307 Score: 324
Period size: 100 Copynumber: 2.4 Consensus size: 98
48470056 TATTGTGAGG
* *
48470066 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
48470131 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAA-TT-GA
* ** *
48470166 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * * *
48470231 TAAGTGTAGGCTACTATGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTATGCGTACCCGATAATTGA
* * * *
48470265 TCGCATGTGTAGTACTAAGTGCA-GCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
48470308 GCTTTGGCTA
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
98 16 0.13
99 22 0.18
100 45 0.36
101 42 0.34
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGATAATTGA
Found at i:48470325 original size:101 final size:101
Alignment explanation
Indices: 48470066--48470325 Score: 305
Period size: 101 Copynumber: 2.6 Consensus size: 101
48470056 TATTGTGAGG
* * * *
48470066 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATA-ATTGGTCGCA-TGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTTGGTC-AAGTGTGTAGTA
48470129 CTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
65 CTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* * * * *
48470166 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTTGGTCAAGTGTGTAGTAC
* * * *
48470231 TAAGTGTAGGCTACTATGTGTACCGGATAA-TT-GG
66 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* * *
48470265 TCGCATGTGTAGTACTAAGTGCA-GCTACTATGCGTACCAGATAGCTTTGGCTACAAGTGTG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TTTGG-T-CAAGTGTG
48470326 AAAATATGTG
Statistics
Matches: 136, Mismatches: 19, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
98 17 0.12
99 26 0.19
100 44 0.32
101 49 0.36
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTTGGTCAAGTGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:48473062 original size:22 final size:22
Alignment explanation
Indices: 48473037--48473086 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
48473027 AGTGAAATTA
*
48473037 GGCCATTTAAAGTGTGATGGCC
1 GGCCATTGAAAGTGTGATGGCC
48473059 GGCCATTGAAAGTGTGATGGCC
1 GGCCATTGAAAGTGTGATGGCC
48473081 GGCCAT
1 GGCCAT
48473087 GGGAGACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (22 bp):
GGCCATTGAAAGTGTGATGGCC
Found at i:48473511 original size:20 final size:18
Alignment explanation
Indices: 48473486--48473522 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
48473476 ATTGCTAAGT
48473486 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
48473506 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
48473523 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:48476833 original size:46 final size:45
Alignment explanation
Indices: 48476780--48476946 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 45
48476770 GACCAGGGCT
*
48476780 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGATCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAG-ATGTGA-CC
* * *
48476826 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTGA-CC
* * * ** * *
48476872 AATGTCAGACATGTCTGGGACATGCGTTGGCTACGAGATGTG-CT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTGACC
*
48476916 AGTGTAAGACATGTCTGGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
48476947 ACGGTTACAT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
44 28 0.27
46 73 0.71
47 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTGACC
Found at i:48479720 original size:20 final size:18
Alignment explanation
Indices: 48479695--48479731 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
48479685 ATAGCTAAGT
48479695 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
48479715 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
48479732 TATGAATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:48483557 original size:53 final size:52
Alignment explanation
Indices: 48483500--48483627 Score: 154
Period size: 53 Copynumber: 2.4 Consensus size: 52
48483490 ATTATATACA
48483500 TAATAATATATATTATTATATGTCT-TTATAAATTTTATTATATGTTATAT-TTT
1 TAAT-ATATATATTATTATAT-TCTATT-TAAATTTTATTATATGTTATATATTT
* *
48483553 TAATATATACTATTTATTCTATTCTATTTATATTTTATTATATGTTATATATTTT
1 TAATATATA-TA-TTATTATATTCTATTTAAATTTTATTATATGTTATATA-TTT
*
48483608 TATTATATATATTATT-TATT
1 TAATATATATATTATTATATT
48483628 TTACCATATT
Statistics
Matches: 67, Mismatches: 3, Indels: 11
0.83 0.04 0.14
Matches are distributed among these distances:
52 9 0.13
53 35 0.52
54 12 0.18
55 11 0.16
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (52 bp):
TAATATATATATTATTATATTCTATTTAAATTTTATTATATGTTATATATTT
Found at i:48483618 original size:15 final size:16
Alignment explanation
Indices: 48483572--48483627 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
48483562 CTATTTATTC
*
48483572 TATTCTATT-TATATTT
1 TATT-TATTATATATAT
48483588 TATTATATGT-TATATAT
1 TATT-TAT-TATATATAT
48483605 T-TTTATTATATATAT
1 TATTTATTATATATAT
48483620 TATTTATT
1 TATTTATT
48483628 TTACCATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 1 0.03
15 11 0.31
16 15 0.43
17 8 0.23
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
TATTTATTATATATAT
Found at i:48491162 original size:13 final size:13
Alignment explanation
Indices: 48491144--48491171 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
48491134 ATGGTTCTCA
48491144 CATAAAGACATAT
1 CATAAAGACATAT
48491157 CATAAAGACATAT
1 CATAAAGACATAT
48491170 CA
1 CA
48491172 AAATATGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.18, G:0.07, T:0.21
Consensus pattern (13 bp):
CATAAAGACATAT
Found at i:48496774 original size:44 final size:44
Alignment explanation
Indices: 48496674--48497036 Score: 505
Period size: 44 Copynumber: 8.3 Consensus size: 44
48496664 GATCTAAGAT
* * * * *
48496674 GATTTGGCATCTCTGTATTGTCAGAGAACAAATC-AAAAAAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
48496717 GATTTGGCGTCTCTGTATTGTCAGAGAGCATATCGAAGGTAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
48496761 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
48496805 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGGTAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
48496849 GATTTGGCGTCTCCGTATTGTCAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * * *
48496893 GATTTGGCATCTCTGTATTGTCAGTGAACAAATCGAAGAT-GCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
48496936 GATTTGGTGTTTCTGTATTGTCAGAGAGCAGATCGAAGGTAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
48496980 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
48497024 GATTTGGCGTCTC
1 GATTTGGCGTCTC
48497037 AGTCAAGATA
Statistics
Matches: 280, Mismatches: 38, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
43 67 0.24
44 213 0.76
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:48497063 original size:70 final size:70
Alignment explanation
Indices: 48496975--48497106 Score: 219
Period size: 70 Copynumber: 1.9 Consensus size: 70
48496965 AGATCGAAGG
*
48496975 TAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCAGT
1 TAGCAGATTTGGCATCTCTGTATTGCCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCAGT
48497040 CAAGA
66 CAAGA
* * * *
48497045 TAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGGTAGCAGATTTGGCGTCTC
1 TAGCAGATTTGGCATCTCTGTATTGCCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTC
48497107 TATATTGTCA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 57 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (70 bp):
TAGCAGATTTGGCATCTCTGTATTGCCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCAGT
CAAGA
Found at i:48497078 original size:114 final size:113
Alignment explanation
Indices: 48496928--48497150 Score: 365
Period size: 114 Copynumber: 2.0 Consensus size: 113
48496918 GAACAAATCG
* * *
48496928 AAGATGCAGATTTGGTGTTTCTGTATTGTCAGAGAGCAGATCGAAGGTAGCAGATTTGGCATCTC
1 AAGATGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGGTAGCAGATTTGGCATCTC
* *
48496993 TGTATTGTCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCAGTC
66 TATATTGTCAGAGAGCAGATCAAAGATAACAGATTAGGCGTCTCAGTC
*
48497041 AAGATAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGGTAGCAGATTTGGCGTCT
1 AAGAT-GCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGGTAGCAGATTTGGCATCT
* *
48497106 CTATATTGTCAGAGAGCAGATCAAAGATAGCAGATTAGGTGTCTC
65 CTATATTGTCAGAGAGCAGATCAAAGATAACAGATTAGGCGTCTC
48497151 TGTATTGTTA
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
113 5 0.05
114 96 0.95
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (113 bp):
AAGATGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGGTAGCAGATTTGGCATCTC
TATATTGTCAGAGAGCAGATCAAAGATAACAGATTAGGCGTCTCAGTC
Found at i:48497113 original size:44 final size:44
Alignment explanation
Indices: 48497041--48497310 Score: 387
Period size: 44 Copynumber: 6.1 Consensus size: 44
48497031 CGTCTCAGTC
* *
48497041 AAGATAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * * *
48497085 AAGGTAGCAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCA
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* ** *
48497129 AAGATAGCAGATTAGGTGTCTCTGTATTGTTAGAGAGCAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * *
48497173 AAGACAGCAGATTTGGTATCTCTGTATTGTCAGAGAGCAAATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * *
48497217 AAGACAGCAGATTTGGTATCTCTGTATTGTCAGAGAGCAAATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
*
48497261 AAGATAGCAGATTTGGCATCTTTGTATTGTCAGAGAGCAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
48497305 AAGATA
1 AAGATA
48497311 TCAACATGGT
Statistics
Matches: 207, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 207 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (44 bp):
AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
Found at i:48497171 original size:158 final size:157
Alignment explanation
Indices: 48496884--48497188 Score: 439
Period size: 158 Copynumber: 1.9 Consensus size: 157
48496874 GAGCAGATCA
* * * *
48496884 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGTGAACAAATCGAAGATGCAGATTTGGTGTTTC
1 AAGATAGCAGATTTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGATGCAGATTTGGCGTCTC
* * * *
48496949 TGTATTGTCAGAGAGCAGATCGAAGGTAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
66 TATATTGTCAGAGAGCAGATCAAAGATAGCAGATTAGGCATCTCTGTATTGTCAGAGAGCAGATC
*
48497014 AAAGATAACAGATTTGGCGTCTCAGTC
131 AAAGACAACAGATTTGGCGTCTCAGTC
* * * *
48497041 AAGATAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGGTAGCAGATTTGGCGTCT
1 AAGATAGCAGATTTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAT-GCAGATTTGGCGTCT
** *
48497106 CTATATTGTCAGAGAGCAGATCAAAGATAGCAGATTAGGTGTCTCTGTATTGTTAGAGAGCAGAT
65 CTATATTGTCAGAGAGCAGATCAAAGATAGCAGATTAGGCATCTCTGTATTGTCAGAGAGCAGAT
* *
48497171 CGAAGACAGCAGATTTGG
130 CAAAGACAACAGATTTGG
48497189 TATCTCTGTA
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
157 43 0.33
158 86 0.67
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (157 bp):
AAGATAGCAGATTTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGATGCAGATTTGGCGTCTC
TATATTGTCAGAGAGCAGATCAAAGATAGCAGATTAGGCATCTCTGTATTGTCAGAGAGCAGATC
AAAGACAACAGATTTGGCGTCTCAGTC
Found at i:48498822 original size:21 final size:21
Alignment explanation
Indices: 48498798--48498862 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
48498788 TTTTAAGTAT
*
48498798 TATATATATTATTTTTTTATA
1 TATATATATTATTTATTTATA
* * *
48498819 TATAAATAGTAATTATTTATA
1 TATATATATTATTTATTTATA
48498840 TA-ATAATATATATATTA-TTATA
1 TATAT-ATAT-TAT-TTATTTATA
48498862 T
1 T
48498863 GTCTTTATAA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
20 1 0.03
21 22 0.65
22 8 0.24
23 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TATATATATTATTTATTTATA
Found at i:48498928 original size:20 final size:18
Alignment explanation
Indices: 48498874--48498969 Score: 71
Period size: 16 Copynumber: 5.4 Consensus size: 18
48498864 TCTTTATAAA
48498874 TTTTATTATATGTTATA-T
1 TTTTATTATAT-TTATATT
*
48498892 TTTTA--ATATATACTATT
1 TTTTATTATATTTA-TATT
48498909 TATTCTATTATATTTATA--
1 T-TT-TATTATATTTATATT
48498927 TTTTATTATATGTTATATAT
1 TTTTATTATAT-TTATAT-T
48498947 TTTTATTATA--TATATT
1 TTTTATTATATTTATATT
*
48498963 ATTTATT
1 TTTTATT
48498970 TTACCATATT
Statistics
Matches: 65, Mismatches: 3, Indels: 22
0.72 0.03 0.24
Matches are distributed among these distances:
15 2 0.03
16 21 0.32
17 14 0.22
18 8 0.12
19 2 0.03
20 12 0.18
21 6 0.09
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTATTATATTTATATT
Found at i:48498945 original size:25 final size:25
Alignment explanation
Indices: 48498873--48498961 Score: 76
Period size: 25 Copynumber: 3.5 Consensus size: 25
48498863 GTCTTTATAA
*
48498873 ATTTTATTATATGTTATATTTTTAAT
1 ATTTTATTATATGTTATATATTT-AT
*
48498899 ATATACTATT-TAT-TCTATTATATTTAT
1 AT-T-TTATTATATGT-TA-TATATTTAT
*
48498926 ATTTTATTATATGTTATATATTTTT
1 ATTTTATTATATGTTATATATTTAT
*
48498951 ATTATA-TATAT
1 ATTTTATTATAT
48498962 TATTTATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
24 5 0.10
25 17 0.33
26 9 0.17
27 11 0.21
28 10 0.19
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
ATTTTATTATATGTTATATATTTAT
Found at i:48498960 original size:15 final size:16
Alignment explanation
Indices: 48498795--48498969 Score: 61
Period size: 16 Copynumber: 11.2 Consensus size: 16
48498785 TAATTTTAAG
48498795 TATTATATATATTATTT
1 TATTATATATATTA-TT
* * *
48498812 TTTTATATATAAATAGT
1 TATTATATAT-ATTATT
* * *
48498829 AATTATTTATA-TA-A
1 TATTATATATATTATT
*
48498843 TAATATATATATTATT
1 TATTATATATATTATT
* * *
48498859 ATATGTCTTTATA-AATTT
1 -TAT-TATATATATTA-TT
*
48498877 TATTATATGT-TATATT
1 TATTATATATAT-TATT
*
48498893 T-TTAATATATACTATT
1 TATT-ATATATATTATT
*
48498909 TATTCTAT-TA-TATT
1 TATTATATATATTATT
*
48498923 TA-TAT-TTTATTA--
1 TATTATATATATTATT
48498935 TATGT-TATATATT-TT
1 TAT-TATATATATTATT
48498950 TATTATATATATTATT
1 TATTATATATATTATT
48498966 TATT
1 TATT
48498970 TTACCATATT
Statistics
Matches: 114, Mismatches: 24, Indels: 41
0.64 0.13 0.23
Matches are distributed among these distances:
12 3 0.03
13 5 0.04
14 23 0.20
15 19 0.17
16 27 0.24
17 26 0.23
18 11 0.10
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTATATATATTATT
Found at i:48498966 original size:73 final size:79
Alignment explanation
Indices: 48498795--48498966 Score: 180
Period size: 73 Copynumber: 2.2 Consensus size: 79
48498785 TAATTTTAAG
*
48498795 TATTATATATATTATTTTTTTATATATAAATAGTAATTATTTATATAATAATATATATATTATTA
1 TATTATATATATTA--TTTTTATATAT-AATACTAATTATTTATATAATAATATATATATTATTA
*
48498860 TATGTCTTTATAAATTT
63 TATGTCTATATAAATTT
* * * *
48498877 TATTATATGT-TATATTTTTA-ATAT-ATACTATTTATTCTAT-T-AT-ATTTATATTTTATTAT
1 TATTATATATAT-TATTTTTATATATAATACTAATTATT-TATATAATAATATATATATTATTAT
*
48498936 ATGT-TATAT-ATTTT
64 ATGTCTATATAAATTT
48498950 TATTATATATATTATTT
1 TATTATATATATTATTT
48498967 ATTTTACCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
73 18 0.23
74 5 0.06
75 18 0.23
76 2 0.03
77 11 0.14
78 3 0.04
79 4 0.05
80 6 0.08
81 1 0.01
82 11 0.14
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (79 bp):
TATTATATATATTATTTTTATATATAATACTAATTATTTATATAATAATATATATATTATTATAT
GTCTATATAAATTT
Found at i:48498984 original size:41 final size:42
Alignment explanation
Indices: 48498898--48498985 Score: 99
Period size: 41 Copynumber: 2.1 Consensus size: 42
48498888 ATATTTTTAA
* **
48498898 TATATACTATTTATTCTATTATATTTATATTTTATTATATGT
1 TATATACTATTTATTATATTATATTTATATTTTACCATATGT
* * *
48498940 TATATA-TTTTTATTATA-TATATTATTTATTTTACCATATTT
1 TATATACTATTTATTATATTATATT-TATATTTTACCATATGT
48498981 TATAT
1 TATAT
48498986 GTAAAATTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
40 6 0.15
41 27 0.69
42 6 0.15
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (42 bp):
TATATACTATTTATTATATTATATTTATATTTTACCATATGT
Found at i:48502690 original size:21 final size:25
Alignment explanation
Indices: 48502664--48502710 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
48502654 CCCCTTTTAT
48502664 TCTTC-TTA-CTCATTC-CC-CTTG
1 TCTTCTTTAGCTCATTCTCCACTTG
48502685 TCTTCTTTAGCTCATTCTCCACTTG
1 TCTTCTTTAGCTCATTCTCCACTTG
48502710 T
1 T
48502711 ATAATTAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 5 0.23
22 3 0.14
23 7 0.32
24 2 0.09
25 5 0.23
ACGTcount: A:0.11, C:0.34, G:0.06, T:0.49
Consensus pattern (25 bp):
TCTTCTTTAGCTCATTCTCCACTTG
Found at i:48504997 original size:40 final size:39
Alignment explanation
Indices: 48504952--48505159 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
48504942 CGGAATACAA
*
48504952 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48504992 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48505032 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
48505072 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
48505112 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
48505152 CCGGATAT
1 CCGGATAT
48505160 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48505099 original size:80 final size:81
Alignment explanation
Indices: 48504952--48505157 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
48504942 CGGAATACAA
* * * *
48504952 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
48505016 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
48505032 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
48505095 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
48505112 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
48505158 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:48512978 original size:40 final size:39
Alignment explanation
Indices: 48512933--48513140 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
48512923 CGGAATACAA
*
48512933 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48512973 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
48513013 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
48513053 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
48513093 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
48513133 CCGGATAT
1 CCGGATAT
48513141 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48513080 original size:80 final size:81
Alignment explanation
Indices: 48512933--48513138 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
48512923 CGGAATACAA
* * * *
48512933 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
48512997 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
48513013 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
48513076 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
48513093 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
48513139 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:48516981 original size:10 final size:10
Alignment explanation
Indices: 48516962--48517028 Score: 66
Period size: 10 Copynumber: 6.6 Consensus size: 10
48516952 CATGAAACAT
48516962 TGATAT-ACA
1 TGATATGACA
48516971 TGATATGACA
1 TGATATGACA
*
48516981 TGATATGTGCA
1 TGATATG-ACA
**
48516992 TGATATGTTA
1 TGATATGACA
48517002 TGATATGAACA
1 TGATATG-ACA
48517013 TGATATG-CTA
1 TGATATGAC-A
48517023 TGATAT
1 TGATAT
48517029 ATTCACTATA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.51
11 17 0.35
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:48516995 original size:21 final size:20
Alignment explanation
Indices: 48516968--48517028 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
48516958 ACATTGATAT
*
48516968 ACATGATATGACATGATATGT
1 ACATGATATG-CATGATATGA
* *
48516989 GCATGATATGTTATGATATGA
1 ACATGATATG-CATGATATGA
48517010 ACATGATATGCTATGATAT
1 ACATGATATGC-ATGATAT
48517029 ATTCACTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (20 bp):
ACATGATATGCATGATATGA
Found at i:48517019 original size:16 final size:15
Alignment explanation
Indices: 48516970--48517025 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
48516960 ATTGATATAC
48516970 ATGATATGACATGAT
1 ATGATATGACATGAT
* *
48516985 ATG-TGCATGATATGTT
1 ATGAT--ATGACATGAT
48517001 ATGATATGAACATGAT
1 ATGATATG-ACATGAT
*
48517017 ATGCTATGA
1 ATGATATGA
48517026 TATATTCACT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
14 1 0.03
15 7 0.22
16 23 0.72
17 1 0.03
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (15 bp):
ATGATATGACATGAT
Found at i:48517134 original size:24 final size:24
Alignment explanation
Indices: 48517078--48517148 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
48517068 GAAGTGTGGA
48517078 AAAG-GGCTTTGCCCCAGTTTATCG
1 AAAGAGGCTTTGCCCCAG-TTATCG
**
48517102 AAA-AGGGCTTTGCCCCAGTTATTT
1 AAAGA-GGCTTTGCCCCAGTTATCG
**
48517126 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAGAGGCTTTGCC-CCAGTTAT
48517149 ATGATAAAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 17 0.44
25 22 0.56
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGAGGCTTTGCCCCAGTTATCG
Found at i:48524821 original size:11 final size:11
Alignment explanation
Indices: 48524796--48524847 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
48524786 ACATTGATAT
48524796 ACATGATAT-G
1 ACATGATATGG
48524806 ACATGATATGG
1 ACATGATATGG
48524817 ACATGATAT-G
1 ACATGATATGG
** *
48524827 TTATGATATGC
1 ACATGATATGG
48524838 ACATGATATG
1 ACATGATATG
48524848 CTATGATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
10 17 0.49
11 18 0.51
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.33
Consensus pattern (11 bp):
ACATGATATGG
Found at i:48524822 original size:21 final size:20
Alignment explanation
Indices: 48524796--48524856 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 20
48524786 ACATTGATAT
*
48524796 ACATGATATGACATGATATGG
1 ACATGATATG-CATGATATGC
*
48524817 ACATGATATGTTATGATATGC
1 ACATGATATG-CATGATATGC
48524838 ACATGATATGCTATGATAT
1 ACATGATATGC-ATGATAT
48524857 ATTCACTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:48524836 original size:5 final size:5
Alignment explanation
Indices: 48524798--48524856 Score: 55
Period size: 5 Copynumber: 11.4 Consensus size: 5
48524788 ATTGATATAC
* * * * *
48524798 ATGAT ATGAC ATGAT ATGGAC ATGAT ATGTT ATGAT ATGCAC ATGAT ATGCT
1 ATGAT ATGAT ATGAT AT-GAT ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT
48524850 ATGAT AT
1 ATGAT AT
48524857 ATTCACTATA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 34 0.81
6 8 0.19
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (5 bp):
ATGAT
Found at i:48524848 original size:11 final size:10
Alignment explanation
Indices: 48524790--48524856 Score: 75
Period size: 10 Copynumber: 6.6 Consensus size: 10
48524780 CATGAAACAT
48524790 TGATAT-ACA
1 TGATATGACA
48524799 TGATATGACA
1 TGATATGACA
48524809 TGATATGGACA
1 TGATAT-GACA
**
48524820 TGATATGTTA
1 TGATATGACA
48524830 TGATATGCACA
1 TGATATG-ACA
48524841 TGATATG-CTA
1 TGATATGAC-A
48524851 TGATAT
1 TGATAT
48524857 ATTCACTATA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.50
11 18 0.36
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:48526673 original size:208 final size:209
Alignment explanation
Indices: 48526314--48526733 Score: 779
Period size: 208 Copynumber: 2.0 Consensus size: 209
48526304 TTTTCACTTT
*
48526314 CTTGGGCCTCAAATTCAGACTGTATTTTACTAAAAAAAAACTGATTAGTGCTTGGGCCAAATTTG
1 CTTGGGCCTCAAATTCAGACTGTATCTTACTAAAAAAAAACTGATTAGTGCTTGGGCCAAATTTG
*
48526379 ACCCCCTTTATTGACATAAAAATTTAAAATTTAAACAAAACAAATGAAACTTAAAAGAATTTTAA
66 ACCCCCTTTATTAACATAAAAATTTAAAATTTAAACAAAACAAATGAAACTTAAAAGAATTTTAA
48526444 ATCTTAATTACAAAATTTCTTCTCAATAAATTACATTAAATTAATCTCAGGAAAGGTTAGAGGGG
131 ATCTTAATTACAAAATTTCTTCTCAATAAATTACATTAAATTAATCTCAGGAAAGGTTAGAGGGG
48526509 TCACAGTGGTCCCG
196 TCACAGTGGTCCCG
48526523 CTTGGGCCTCAAATTCAGACTGTATCTTACT-AAAAAAAACTGATTAGTGCTTGGGCCAAATTTG
1 CTTGGGCCTCAAATTCAGACTGTATCTTACTAAAAAAAAACTGATTAGTGCTTGGGCCAAATTTG
*
48526587 ACCCCCTTTATTAACATAAAAATTTAAAATTTAAACTAAACAAATGAAACTTAAAAGAATTTTAA
66 ACCCCCTTTATTAACATAAAAATTTAAAATTTAAACAAAACAAATGAAACTTAAAAGAATTTTAA
* *
48526652 ATCTTAATTACAAAATTTCTTCTCAATAAATTACATTAAATTAATCTTAGGAAAGGTTGGAGGGG
131 ATCTTAATTACAAAATTTCTTCTCAATAAATTACATTAAATTAATCTCAGGAAAGGTTAGAGGGG
*
48526717 TCATAGTGGTCCCG
196 TCACAGTGGTCCCG
48526731 CTT
1 CTT
48526734 AAGTTCCAAC
Statistics
Matches: 205, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
208 175 0.85
209 30 0.15
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (209 bp):
CTTGGGCCTCAAATTCAGACTGTATCTTACTAAAAAAAAACTGATTAGTGCTTGGGCCAAATTTG
ACCCCCTTTATTAACATAAAAATTTAAAATTTAAACAAAACAAATGAAACTTAAAAGAATTTTAA
ATCTTAATTACAAAATTTCTTCTCAATAAATTACATTAAATTAATCTCAGGAAAGGTTAGAGGGG
TCACAGTGGTCCCG
Found at i:48530024 original size:39 final size:39
Alignment explanation
Indices: 48529981--48530059 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
48529971 TAGGGTTATG
48529981 AGGCATTACCTAACCAATACACAACTTAAGAGAGAGATA
1 AGGCATTACCTAACCAATACACAACTTAAGAGAGAGATA
48530020 AGGCATTACCTAACCAATACACAACTTAAGAGAGAGATA
1 AGGCATTACCTAACCAATACACAACTTAAGAGAGAGATA
48530059 A
1 A
48530060 TCATTACTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.18
Consensus pattern (39 bp):
AGGCATTACCTAACCAATACACAACTTAAGAGAGAGATA
Found at i:48537686 original size:43 final size:42
Alignment explanation
Indices: 48537546--48537691 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 42
48537536 AACGCTAACA
* *
48537546 TCCCAGACGTGGTCTTACATGCAATCACATATCAATGCC-ACTA
1 TCCCAGACGTGGTCTTACATGCAATCACAT-TCGATGCCAAC-G
* * * * *
48537589 TTCCAGATAG-GGTCTTACAT-CAATCAAATACGATGCCAATG
1 TCCCAGA-CGTGGTCTTACATGCAATCACATTCGATGCCAACG
* * *
48537630 TCCCAGACATGGTCTTACATGTAATCACATGTCGATACCAACG
1 TCCCAGACGTGGTCTTACATGCAATCACAT-TCGATGCCAACG
48537673 TCCCAGACGTGGTCTTACA
1 TCCCAGACGTGGTCTTACA
48537692 CGAGAACATA
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
41 22 0.27
42 16 0.20
43 43 0.52
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATGCAATCACATTCGATGCCAACG
Found at i:48540796 original size:52 final size:50
Alignment explanation
Indices: 48540714--48540847 Score: 196
Period size: 52 Copynumber: 2.6 Consensus size: 50
48540704 ATTGTGAGGA
* * *
48540714 CACATGTGTAGTACTATGTGCAGGTTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAAATGG--TTAGGT
* * *
48540766 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAAATGGTTAGGT
48540816 CACATGTGTAGTACTAAGTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
48540848 CGTACCCGAT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
50 37 0.49
52 38 0.51
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.34
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAAATGGTTAGGT
Found at i:48540833 original size:50 final size:50
Alignment explanation
Indices: 48540714--48540889 Score: 208
Period size: 50 Copynumber: 3.5 Consensus size: 50
48540704 ATTGTGAGGA
* * * * *
48540714 CACATGTGTAGTACTATGTGCAGGTTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGG--TTAGGT
*
48540766 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGT
* * * * * *
48540816 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GGTTAGGT
*
48540867 CACATGTGTGGTACTAAGTGCAG
1 CACATGTGTAGTACTAAGTGCAG
48540890 AACATTATAT
Statistics
Matches: 109, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
50 44 0.40
51 27 0.25
52 38 0.35
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGT
Found at i:48542597 original size:29 final size:29
Alignment explanation
Indices: 48542555--48542651 Score: 158
Period size: 29 Copynumber: 3.3 Consensus size: 29
48542545 GAAAGCATGA
48542555 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
48542584 ATATGAATGTGATTTGGGTCTAATGGTCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
48542613 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
48542642 ATATGCATGT
1 ATATGAATGT
48542652 ATGTAGACTT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:48561131 original size:46 final size:46
Alignment explanation
Indices: 48561081--48561256 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
48561071 TGGTTGAGCA
48561081 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48561127 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
48561172 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48561220 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48561257 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48561237 original size:93 final size:93
Alignment explanation
Indices: 48561078--48561249 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
48561068 GGATGGTTGA
* *
48561078 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48561143 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
48561171 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48561236 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
48561250 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48568783 original size:45 final size:46
Alignment explanation
Indices: 48568620--48568794 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
48568610 TGGTTGAGCA
*
48568620 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
48568666 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
48568711 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
48568759 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48568795 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:48576120 original size:13 final size:13
Alignment explanation
Indices: 48576102--48576130 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
48576092 TTTAGTTTAA
48576102 TTAGTTAATTAGT
1 TTAGTTAATTAGT
48576115 TTAGTTAATTAGT
1 TTAGTTAATTAGT
48576128 TTA
1 TTA
48576131 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:48582664 original size:54 final size:54
Alignment explanation
Indices: 48582572--48582680 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
48582562 TTTTTTTACA
*
48582572 ATTGATAATGATTTTTCCAAGTCAGAACAGGGGATCACGTAGTCATTCTGAACC
1 ATTGATAATGATTTTTCCAAGTAAGAACAGGGGATCACGTAGTCATTCTGAACC
* *
48582626 ATTGTTAATTATTTTTCCAAGTAAGAACAGGGGATCACGTAGTCATTCTGAACC
1 ATTGATAATGATTTTTCCAAGTAAGAACAGGGGATCACGTAGTCATTCTGAACC
48582680 A
1 A
48582681 GTCTCTCAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (54 bp):
ATTGATAATGATTTTTCCAAGTAAGAACAGGGGATCACGTAGTCATTCTGAACC
Found at i:48583345 original size:22 final size:22
Alignment explanation
Indices: 48583320--48583365 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
48583310 TACACATAGT
*
48583320 ATCACCCATGCGACCTAGCTAC
1 ATCACACATGCGACCTAGCTAC
* *
48583342 ATCATACATGTGACCTAGCTAC
1 ATCACACATGCGACCTAGCTAC
48583364 AT
1 AT
48583366 ACCATCTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (22 bp):
ATCACACATGCGACCTAGCTAC
Found at i:48587822 original size:40 final size:40
Alignment explanation
Indices: 48587767--48587950 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
48587757 CTCGCACAAG
* * *
48587767 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* **
48587807 GCCTTCGGGACTTAGCCCGGATATAATTGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
48587847 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGGACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * * *
48587887 GCCTT-TGGATCTCAGTCCAGATATAGTCACTAGCATAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAAT
48587927 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
48587951 CATTCGAATA
Statistics
Matches: 115, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 109 0.95
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:48590646 original size:17 final size:17
Alignment explanation
Indices: 48590616--48590654 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
48590606 TTGGAAAAAG
48590616 AAAACAAATAAATCTTA
1 AAAACAAATAAATCTTA
* *
48590633 AAAACGAATGAATCTTA
1 AAAACAAATAAATCTTA
48590650 AAAAC
1 AAAAC
48590655 TTAATAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.62, C:0.13, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAACAAATAAATCTTA
Found at i:48598566 original size:68 final size:63
Alignment explanation
Indices: 48598457--48598641 Score: 178
Period size: 68 Copynumber: 2.8 Consensus size: 63
48598447 TACAGATGGT
** * * *
48598457 ATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACGAGACATT
1 ATGTAGCTAGGTCACATGGGTGGTACT-AGTGTACACCATGTGTACAAGAGAGCTACG-G-CA-T
*
48598522 ATG
62 A-A
* *
48598525 ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGATAA
1 ATGTAGCTAGGTCACATGGGTGGTACTA-GTGTACACCATGT-GTACAAGAGAGCTACGGCATAA
* *
48598589 ACTG--GCTAGGTCACATAGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 A-TGTAGCTAGGTCACATGGGTGGTACT-AGTGTACACCATGTGTACAAGAGAGC
48598642 CAAAATTATG
Statistics
Matches: 101, Mismatches: 11, Indels: 15
0.80 0.09 0.12
Matches are distributed among these distances:
62 1 0.01
63 42 0.42
64 2 0.02
65 4 0.04
66 1 0.01
67 2 0.02
68 48 0.48
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (63 bp):
ATGTAGCTAGGTCACATGGGTGGTACTAGTGTACACCATGTGTACAAGAGAGCTACGGCATAA
Found at i:48602575 original size:40 final size:40
Alignment explanation
Indices: 48602520--48602733 Score: 322
Period size: 40 Copynumber: 5.4 Consensus size: 40
48602510 TGATAACCGA
*
48602520 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
*
48602560 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCTGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
48602600 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
* **
48602640 GCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
* * * *
48602680 GCTAAGTCCCGAAGGCATTTGAGCAAGTAACTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
**
48602719 GCTAAACCCCGAAGG
1 GCTAAGTCCCGAAGG
48602734 TACTTGGTTG
Statistics
Matches: 161, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 14 0.09
40 147 0.91
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
Found at i:48605573 original size:23 final size:23
Alignment explanation
Indices: 48605545--48605590 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
48605535 CTAATGTGAT
48605545 TGCTTTGATTGACCCTGGTTCTA
1 TGCTTTGATTGACCCTGGTTCTA
48605568 TGCTTTGATTGACCCTGGTTCTA
1 TGCTTTGATTGACCCTGGTTCTA
48605591 CTCATTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.43
Consensus pattern (23 bp):
TGCTTTGATTGACCCTGGTTCTA
Found at i:48609382 original size:11 final size:11
Alignment explanation
Indices: 48609366--48609390 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
48609356 CCGTACCTAG
48609366 AAGAAAAAAAA
1 AAGAAAAAAAA
48609377 AAGAAAAAAAA
1 AAGAAAAAAAA
48609388 AAG
1 AAG
48609391 CTCTCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:48610836 original size:40 final size:40
Alignment explanation
Indices: 48610781--48610994 Score: 322
Period size: 40 Copynumber: 5.4 Consensus size: 40
48610771 TGATAACCGA
*
48610781 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
*
48610821 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCTGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
48610861 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
* **
48610901 GCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
* * * *
48610941 GCTAAGTCCCGAAGGCATTTGAGCAAGTAACTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
**
48610980 GCTAAACCCCGAAGG
1 GCTAAGTCCCGAAGG
48610995 TACTTGGTTG
Statistics
Matches: 161, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 14 0.09
40 147 0.91
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGG
Found at i:48613832 original size:23 final size:23
Alignment explanation
Indices: 48613804--48613849 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
48613794 CTAATGTGAT
48613804 TGCTTTGATTGACCCTGGTTCTA
1 TGCTTTGATTGACCCTGGTTCTA
48613827 TGCTTTGATTGACCCTGGTTCTA
1 TGCTTTGATTGACCCTGGTTCTA
48613850 CTCATTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.43
Consensus pattern (23 bp):
TGCTTTGATTGACCCTGGTTCTA
Found at i:48619075 original size:40 final size:40
Alignment explanation
Indices: 48619019--48619195 Score: 241
Period size: 40 Copynumber: 4.5 Consensus size: 40
48619009 CGGATGAAAA
48619019 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
48619059 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* ** **
48619099 CCGGGATAAGTCCCGAAGGCAAGTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * * *
48619139 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
48619179 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48619196 TACTTGGTTG
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
38 7 0.06
39 6 0.05
40 108 0.89
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:48620034 original size:22 final size:22
Alignment explanation
Indices: 48620006--48620057 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
48619996 TGAATCTACT
48620006 TTCATATGGAAGAAACAAAAAG
1 TTCATATGGAAGAAACAAAAAG
48620028 TTCATATGGAAGAAACAAAAAG
1 TTCATATGGAAGAAACAAAAAG
48620050 TTCATATG
1 TTCATATG
48620058 AGTCATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (22 bp):
TTCATATGGAAGAAACAAAAAG
Found at i:48620872 original size:13 final size:13
Alignment explanation
Indices: 48620854--48620893 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
48620844 GCTTGGCAGG
*
48620854 GACACGCCCGTGT
1 GACACGCCCATGT
48620867 GACACGCCCATGT
1 GACACGCCCATGT
48620880 GACACGCCCATGT
1 GACACGCCCATGT
48620893 G
1 G
48620894 CGATTACTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.20, C:0.38, G:0.28, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:48622150 original size:25 final size:27
Alignment explanation
Indices: 48622113--48622165 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
48622103 TCAAACATGC
48622113 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
48622139 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
48622165 A
1 A
48622166 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:48623681 original size:26 final size:26
Alignment explanation
Indices: 48623650--48623757 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
48623640 TGAAATGCCC
*
48623650 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
48623676 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
48623702 ATCATGTAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
48623728 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
48623754 ATCA
1 ATCA
48623758 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:48625716 original size:14 final size:14
Alignment explanation
Indices: 48625697--48625732 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
48625687 ACATAAGTTA
48625697 AGCTTAGTGATTGC
1 AGCTTAGTGATTGC
48625711 AGCTTAGTGATTGC
1 AGCTTAGTGATTGC
48625725 AGCTTAGT
1 AGCTTAGT
48625733 CTTGAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (14 bp):
AGCTTAGTGATTGC
Found at i:48628562 original size:33 final size:33
Alignment explanation
Indices: 48628520--48628585 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
48628510 CCTAAAAGTA
48628520 TATCTACTTCTAATTAAAACACCTTTTAACCCC
1 TATCTACTTCTAATTAAAACACCTTTTAACCCC
48628553 TATCTACTTCTAATTAAAACACCTTTTAACCCC
1 TATCTACTTCTAATTAAAACACCTTTTAACCCC
48628586 CCCTCTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (33 bp):
TATCTACTTCTAATTAAAACACCTTTTAACCCC
Found at i:48633671 original size:43 final size:43
Alignment explanation
Indices: 48633450--48633672 Score: 322
Period size: 43 Copynumber: 5.2 Consensus size: 43
48633440 ATATTGTACA
* * *
48633450 ATGCCAACGTCCTAGACATGGTCTTTCACATAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
48633493 ATGCC-ACTGTCCCAGACGTGATCTTACACGTAATCACATATCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACATATCG
*
48633536 ATGCCAACGTCCCAGACATGGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
48633579 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCGCATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
48633622 ATGCCAACGTCCAAAACATGGTCTTGCACGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
48633665 ATGCCAAC
1 ATGCCAAC
48633673 TCAAAAATGT
Statistics
Matches: 161, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
42 2 0.01
43 157 0.98
44 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:48636042 original size:23 final size:21
Alignment explanation
Indices: 48635995--48636042 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
48635985 ATTCATATCA
* *
48635995 TTATTGAGCTAATATAATAAT
1 TTATTGAGATAATAGAATAAT
48636016 TTATTGAGATAATAGAACTTAAT
1 TTATTGAGATAATAGAA--TAAT
48636039 TTAT
1 TTAT
48636043 ACTGAAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 15 0.65
23 8 0.35
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (21 bp):
TTATTGAGATAATAGAATAAT
Found at i:48637802 original size:40 final size:40
Alignment explanation
Indices: 48637757--48637924 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
48637747 CGGAATACAA
48637757 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
48637797 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
48637837 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
48637877 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
48637917 CCGGATAT
1 CCGGATAT
48637925 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:48645788 original size:40 final size:40
Alignment explanation
Indices: 48645743--48645910 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
48645733 CGGAATACAA
48645743 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
48645783 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
48645823 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
48645863 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
48645903 CCGGATAT
1 CCGGATAT
48645911 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:48653888 original size:30 final size:31
Alignment explanation
Indices: 48653829--48653888 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
48653819 AGGACATGGG
* * *
48653829 CATGTCCCAAGCCACACGGATGTGTGTGACCA
1 CATGACCCAACCCACACGGA-GCGTGTGACCA
48653861 CATGACCCAACCCACACGGA-CGTGTGAC
1 CATGACCCAACCCACACGGAGCGTGTGAC
48653889 TCTCCAAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 7 0.28
32 18 0.72
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (31 bp):
CATGACCCAACCCACACGGAGCGTGTGACCA
Found at i:48658604 original size:24 final size:24
Alignment explanation
Indices: 48658577--48658663 Score: 131
Period size: 24 Copynumber: 3.6 Consensus size: 24
48658567 CTTATTATGT
*
48658577 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
48658601 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
48658625 TCGCACACATAGTG-CATTAATAAA
1 TCGCACACATAGTGCCA-TAGTAAA
*
48658649 TTGCACACATAGTGC
1 TCGCACACATAGTGC
48658664 ATTTGAGATA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
23 2 0.03
24 56 0.97
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:48658664 original size:24 final size:24
Alignment explanation
Indices: 48658555--48658666 Score: 122
Period size: 24 Copynumber: 4.7 Consensus size: 24
48658545 ACCGAATGTG
* **
48658555 GCACACATAGTGC-TTATTATGTTC
1 GCACACATAGTGCATTAGTA-AATC
*
48658579 GCACACATAGTGCCA-TAGCAAATC
1 GCACACATAGTG-CATTAGTAAATC
48658603 GCACACATAGTGCCA-TAGTAAATC
1 GCACACATAGTG-CATTAGTAAATC
* *
48658627 GCACACATAGTGCATTAATAAATT
1 GCACACATAGTGCATTAGTAAATC
48658651 GCACACATAGTGCATT
1 GCACACATAGTGCATT
48658667 TGAGATAGCC
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
23 2 0.03
24 72 0.92
25 4 0.05
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCATTAGTAAATC
Found at i:48664450 original size:24 final size:24
Alignment explanation
Indices: 48664423--48664509 Score: 131
Period size: 24 Copynumber: 3.6 Consensus size: 24
48664413 CTTATTATGT
*
48664423 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
48664447 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
48664471 TCGCACACATAGTG-CATTAATAAA
1 TCGCACACATAGTGCCA-TAGTAAA
*
48664495 TTGCACACATAGTGC
1 TCGCACACATAGTGC
48664510 ATTTGAGATA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
23 2 0.03
24 56 0.97
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:48664510 original size:24 final size:24
Alignment explanation
Indices: 48664401--48664512 Score: 122
Period size: 24 Copynumber: 4.7 Consensus size: 24
48664391 ACCGAATGTG
* **
48664401 GCACACATAGTGC-TTATTATGTTC
1 GCACACATAGTGCATTAGTA-AATC
*
48664425 GCACACATAGTGCCA-TAGCAAATC
1 GCACACATAGTG-CATTAGTAAATC
48664449 GCACACATAGTGCCA-TAGTAAATC
1 GCACACATAGTG-CATTAGTAAATC
* *
48664473 GCACACATAGTGCATTAATAAATT
1 GCACACATAGTGCATTAGTAAATC
48664497 GCACACATAGTGCATT
1 GCACACATAGTGCATT
48664513 TGAGATAGCC
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
23 2 0.03
24 72 0.92
25 4 0.05
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCATTAGTAAATC
Found at i:48674883 original size:15 final size:15
Alignment explanation
Indices: 48674851--48674879 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
48674841 ATTTTTTATG
48674851 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
48674866 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
48674880 ATTTTTGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:48676931 original size:40 final size:40
Alignment explanation
Indices: 48676843--48677058 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
48676833 AAACCAAGTA
* *
48676843 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
48676881 CCTTCAGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48676921 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48676961 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
48677000 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
48677040 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48677059 TTATCATCCG
Statistics
Matches: 163, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 13 0.08
39 56 0.34
40 94 0.58
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48676973 original size:79 final size:79
Alignment explanation
Indices: 48676843--48677058 Score: 314
Period size: 79 Copynumber: 2.7 Consensus size: 79
48676833 AAACCAAGTA
* * *
48676843 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTC-AATGCCTTCAGGACTTAGCCTGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAG
48676906 TAACTCGCACAAATG
65 TAACTCGCACAAATG
48676921 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAG
48676985 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* * *
48677000 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCAGGACTTAGCCCGG
48677059 TTATCATCCG
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
78 15 0.12
79 90 0.71
80 22 0.17
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCAGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:48684833 original size:40 final size:40
Alignment explanation
Indices: 48684806--48684984 Score: 238
Period size: 40 Copynumber: 4.5 Consensus size: 40
48684796 TACTCACTCG
* *
48684806 AATGCCTTCGTGACTTAGCCTAGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACA
*
48684846 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACA
* *
48684886 AATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACA
* * *
48684926 AATGCC-TCGGGGCTTAGCCC-GA-ATTAGTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCAGATA-TAGTAACTCGCACA
* *
48684964 AATGCCTTCAGCACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
48684985 GGTTATCATC
Statistics
Matches: 126, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
37 1 0.01
38 20 0.16
39 23 0.18
40 82 0.65
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACA
Found at i:48684918 original size:80 final size:79
Alignment explanation
Indices: 48684771--48684986 Score: 260
Period size: 80 Copynumber: 2.7 Consensus size: 79
48684761 AAACCAAGTA
* * * * **
48684771 CCTTCGGGA-TTCAG-CCGGATATAGCTACTCACTCGAATGCCTTCGTGACTTAGCCTAGATATA
1 CCTTCGGGACTT-AGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
48684834 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
*
48684850 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
48684915 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* * * * *
48684930 CC-TCGGGGCTTAGCCCGAAT-TAGTCACTAGCACAAATGCCTTCAGCACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
48684987 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 32 0.27
79 28 0.23
80 60 0.50
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:48687192 original size:45 final size:45
Alignment explanation
Indices: 48687140--48687380 Score: 195
Period size: 45 Copynumber: 5.6 Consensus size: 45
48687130 TATCTATTTT
48687140 CGTGTAAGACCACGTCTGGGACATTGACATCGATATATGTGGTTA
1 CGTGTAAGACCACGTCTGGGACATTGACATCGATATATGTGGTTA
* * * *
48687185 TGTGTAAGACCATGTCTGAGACATTGGA-ATCG-TAT-T-TGATT-
1 CGTGTAAGACCACGTCTGGGACATT-GACATCGATATATGTGGTTA
* * *
48687226 CGTGTAAGACCACGTTTGGGACGTTGGCATCGATATATGTGGTTA
1 CGTGTAAGACCACGTCTGGGACATTGACATCGATATATGTGGTTA
* * * * *
48687271 CGTGTAAGACCATGTTTGGGACATCGATATCG-TAT-T-TGATT-
1 CGTGTAAGACCACGTCTGGGACATTGACATCGATATATGTGGTTA
* * * *
48687312 CGTGTAAGACC-CTGTCTGGGACAGTGGCATTGATATGA-GATAG-TA
1 CGTGTAAGACCAC-GTCTGGGACATTGACATCGATAT-ATG-TGGTTA
*
48687357 --TGTAAGACCAGGTCTGGGACATTG
1 CGTGTAAGACCACGTCTGGGACATTG
48687381 GCATTGTTCG
Statistics
Matches: 154, Mismatches: 28, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
40 1 0.01
41 48 0.31
42 14 0.09
43 24 0.16
44 11 0.07
45 54 0.35
46 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (45 bp):
CGTGTAAGACCACGTCTGGGACATTGACATCGATATATGTGGTTA
Found at i:48687283 original size:86 final size:86
Alignment explanation
Indices: 48687138--48687347 Score: 300
Period size: 86 Copynumber: 2.4 Consensus size: 86
48687128 GATATCTATT
* * *
48687138 TTCGTGTAAGACCACGTCTGGGACATTGACATCGATATATGTGGTTATGTGTAAGACCATGTCTG
1 TTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTG
*
48687203 AGACATTGGA-ATCGTATTTGA
66 AGACA-TCGATATCGTATTTGA
* *
48687224 TTCGTGTAAGACCACGTTTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTTTG
1 TTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTG
*
48687289 GGACATCGATATCGTATTTGA
66 AGACATCGATATCGTATTTGA
*
48687310 TTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATTGATAT
1 TTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATAT
48687348 GAGATAGTAT
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
85 4 0.04
86 107 0.96
87 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (86 bp):
TTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCTG
AGACATCGATATCGTATTTGA
Found at i:48689335 original size:32 final size:32
Alignment explanation
Indices: 48689299--48689364 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
48689289 GTACAAAACT
48689299 TAGATGTTTGTGGTCAAAAGTGGTAAGTCAAC
1 TAGATGTTTGTGGTCAAAAGTGGTAAGTCAAC
48689331 TAGATGTTTGTGGTCAAAAGTGGTAAGTCAAC
1 TAGATGTTTGTGGTCAAAAGTGGTAAGTCAAC
48689363 TA
1 TA
48689365 CTCATCATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (32 bp):
TAGATGTTTGTGGTCAAAAGTGGTAAGTCAAC
Found at i:48700293 original size:2 final size:2
Alignment explanation
Indices: 48700288--48700319 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
48700278 CAATTTTATC
48700288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48700320 GAAGGTGACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48708720 original size:41 final size:41
Alignment explanation
Indices: 48708663--48708745 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
48708653 AATATAAAAG
*
48708663 ACCAATCTCAACCATTAACAAAAGGTGTTAAGGCATACCAA
1 ACCAAGCTCAACCATTAACAAAAGGTGTTAAGGCATACCAA
48708704 ACCAAGCTCAACCATTAACAAAAGGTGTTAAGGCATACCAA
1 ACCAAGCTCAACCATTAACAAAAGGTGTTAAGGCATACCAA
48708745 A
1 A
48708746 AATTGGAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.45, C:0.24, G:0.13, T:0.18
Consensus pattern (41 bp):
ACCAAGCTCAACCATTAACAAAAGGTGTTAAGGCATACCAA
Found at i:48728607 original size:25 final size:25
Alignment explanation
Indices: 48728546--48728607 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
48728536 ATACATCCAC
48728546 ATTTCATAT-TTTATACAATAAGAT
1 ATTTCATATATTTATACAATAAGAT
* ***
48728570 ATTTGAGGCATTTATACAATAAGAT
1 ATTTCATATATTTATACAATAAGAT
48728595 ATTTCATATATTT
1 ATTTCATATATTT
48728608 TCAGCTCGCA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (25 bp):
ATTTCATATATTTATACAATAAGAT
Found at i:48728647 original size:29 final size:29
Alignment explanation
Indices: 48728600--48728686 Score: 156
Period size: 29 Copynumber: 3.0 Consensus size: 29
48728590 AAGATATTTC
*
48728600 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATTTTCAGTTCGCACACTTAGTGCT
*
48728629 ATATATTTTCAGTTTGCACACTTAGTGCT
1 ATATATTTTCAGTTCGCACACTTAGTGCT
48728658 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATTTTCAGTTCGCACACTTAGTGCT
48728687 GTACAATTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (29 bp):
ATATATTTTCAGTTCGCACACTTAGTGCT
Found at i:48736220 original size:29 final size:29
Alignment explanation
Indices: 48736178--48736308 Score: 235
Period size: 29 Copynumber: 4.5 Consensus size: 29
48736168 TTAGTGAATC
48736178 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
48736207 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
48736236 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
48736265 TGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
48736294 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48736309 GTACAATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:48743228 original size:61 final size:61
Alignment explanation
Indices: 48743113--48743228 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
48743103 ATGTGAAATA
* *
48743113 AACATGGCCTAGACTTCCGTACACGGGAAAACCACACGCCCCTGTAGTTCTAGCAGGTTCT
1 AACATGGCCTAGACTTCCGTACACGGGAAAACCACACGCCCATGTACTTCTAGCAGGTTCT
* * * * * *
48743174 AACATGGCTTGGACTTCC-TCACACGGGTAGACCACACGCCCATGTCCTTTTAGCA
1 AACATGGCCTAGACTTCCGT-ACACGGGAAAACCACACGCCCATGTACTTCTAGCA
48743229 AAATCGAGCA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
60 1 0.02
61 45 0.98
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (61 bp):
AACATGGCCTAGACTTCCGTACACGGGAAAACCACACGCCCATGTACTTCTAGCAGGTTCT
Found at i:48753143 original size:40 final size:40
Alignment explanation
Indices: 48753076--48753151 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
48753066 TAGTGCCTCA
*
48753076 TATAGCCGAAGCTATTCCAATTCGCACACTAAGTGCTATT
1 TATAGCCGAAGCTATTCCAAATCGCACACTAAGTGCTATT
**
48753116 TATAGCCGAAGCTATTTTGAAAT-GCACACTAAGTGC
1 TATAGCCGAAGCTA-TTCCAAATCGCACACTAAGTGC
48753152 CAAACATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 27 0.84
41 5 0.16
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (40 bp):
TATAGCCGAAGCTATTCCAAATCGCACACTAAGTGCTATT
Found at i:48755172 original size:49 final size:49
Alignment explanation
Indices: 48755100--48755331 Score: 239
Period size: 49 Copynumber: 4.7 Consensus size: 49
48755090 CTGGTATGCA
* * *
48755100 TAGTAGCCTCCACTTAGTACTACACATGCGACCAATTATCCGGCACACG
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * ** * *
48755149 TAGTAGCCTACACTTAATACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * ** * *
48755199 TAGTAGCCTACACTTAGTACTACACACGTGAACGAATTTATTGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGCG-ACCAA-TTATCCGGTACACG
* * *
48755250 TACTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTGCACG
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACG
** * *
48755299 TAGTAGTTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTACACTTAGTACTACACACGCGACC
48755332 TCACAATAGA
Statistics
Matches: 147, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 65 0.44
50 46 0.31
51 36 0.24
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:48755588 original size:27 final size:27
Alignment explanation
Indices: 48755558--48755611 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
48755548 ATGTACAACC
* *
48755558 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
48755585 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
48755612 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:48766461 original size:29 final size:29
Alignment explanation
Indices: 48766427--48766558 Score: 158
Period size: 29 Copynumber: 4.6 Consensus size: 29
48766417 TACTCGATTT
** *
48766427 CGCACACTTAGTGCCATGCGATTT-AAGCA
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
48766456 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
48766485 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48766514 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48766543 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48766559 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48773865 original size:29 final size:29
Alignment explanation
Indices: 48773831--48773962 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
48773821 TACTCGATTT
** * *
48773831 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
48773860 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
48773889 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48773918 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48773947 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48773963 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48783589 original size:78 final size:80
Alignment explanation
Indices: 48783451--48783633 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 80
48783441 TCGAATGATG
* *
48783451 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTAAACCCGGACTAGATCCGAAGGCATTC
*
48783515 GTGCGAGTTAATA-AA
65 GTGCGAGTCAATATAA
* **
48783530 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AGTTACTAAACCCGGGTTA-AGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAACCCGGACTAGA-T-CCGAAGGCATT
*
48783592 CGTGCGAGTCACTATAA
64 CGTGCGAGTCAATATAA
**
48783609 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48783634 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
76 1 0.01
77 15 0.17
78 40 0.44
79 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAACCCGGACTAGATCCGAAGGCATTCG
TGCGAGTCAATATAA
Found at i:48783624 original size:40 final size:40
Alignment explanation
Indices: 48783452--48783641 Score: 151
Period size: 39 Copynumber: 4.8 Consensus size: 40
48783442 CGAATGATGT
* * * * * *
48783452 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTTAGTCCCGAAGGCATTCGTGC-GAGTCACTAAAC
* * * *
48783492 CCGGAC-TAGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGCTTAG-TCCCGAAGGCATTCGTGCGAGTCACTAAAC
* * *
48783531 CCGGGCTAAG-CCCGAAGGCATTTGTGC-AGTTACTAAAC
1 CCGGGCTTAGTCCCGAAGGCATTCGTGCGAGTCACTAAAC
48783569 CCGGG-TTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTT-AGTCCCGAAGGCATTCGTGCGAGTCACTA-AAC
* * *
48783609 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTTAGTCCCGAAGGCATTCGTGCGAGTC
48783642 GTTATATCCG
Statistics
Matches: 123, Mismatches: 18, Indels: 18
0.77 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 16 0.13
39 54 0.44
40 48 0.39
41 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTTAGTCCCGAAGGCATTCGTGCGAGTCACTAAAC
Found at i:48791544 original size:39 final size:40
Alignment explanation
Indices: 48791422--48791603 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
48791412 TTGAATGATG
* *
48791422 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * *
48791462 TCCGGACTAAGAT-CCGAAGG--TTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
48791500 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * *
48791539 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
48791580 -CCGGGCTTTGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48791604 AGCGAGTCGT
Statistics
Matches: 118, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
37 7 0.06
38 17 0.14
39 42 0.36
40 49 0.42
41 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:48791584 original size:79 final size:78
Alignment explanation
Indices: 48791422--48791603 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 78
48791412 TTGAATGATG
* *
48791422 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTTCG
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGTTCG
48791486 TGCGAGTTAATAAA
65 TGCGAGTTAATAAA
* **
48791500 TCCGGGCTAAGCCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGG--TT
*
48791563 CGTGCGAGTTACTATAA
63 CGTGCGAGTTAATA-AA
** *
48791580 -CCGGGCTTTGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
48791604 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 33 0.37
78 18 0.20
79 36 0.40
80 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGTTCGT
GCGAGTTAATAAA
Found at i:48791609 original size:39 final size:40
Alignment explanation
Indices: 48791423--48791610 Score: 149
Period size: 39 Copynumber: 4.8 Consensus size: 40
48791413 TGAATGATGT
* * * * *
48791423 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAC
** * * *
48791463 CCGGACTAAGAT-CCGAAGG--TTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAC
* *
48791501 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
*
48791540 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
* *
48791580 CCGGGCTT-TGT-CCGAAGGCATTTGAGCGAGT
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGT
48791611 CGTTATATCC
Statistics
Matches: 124, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
37 7 0.06
38 17 0.14
39 48 0.39
40 47 0.38
41 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:48792949 original size:5 final size:5
Alignment explanation
Indices: 48792939--48792968 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
48792929 CAAAATTAGT
48792939 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
48792969 GTATAACTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:48795296 original size:43 final size:41
Alignment explanation
Indices: 48795241--48795375 Score: 164
Period size: 43 Copynumber: 3.1 Consensus size: 41
48795231 ATACCGTACA
*
48795241 ATGCCAAC-GTCCTTGACGTGGTCTTACATGTAATCACATATCG
1 ATGCC-ACTGTCCTAGACG-GGTCTTAC-TGTAATCACATATCG
* *
48795284 ATGCCACTGTCCTAGACAAGGTCTTACTTGTAGTCACATATCG
1 ATGCCACTGTCCTAGAC-GGGTCTTAC-TGTAATCACATATCG
*
48795327 ATGCCACTGTCCCAGACAGGGTCTTACTCGTAATCACATATCG
1 ATGCCACTGTCCTAGAC-GGGTCTTACT-GTAATCACATATCG
48795370 ATGCCA
1 ATGCCA
48795376 ATGTATTAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
42 3 0.04
43 79 0.96
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (41 bp):
ATGCCACTGTCCTAGACGGGTCTTACTGTAATCACATATCG
Found at i:48795444 original size:56 final size:54
Alignment explanation
Indices: 48795358--48795464 Score: 151
Period size: 56 Copynumber: 1.9 Consensus size: 54
48795348 TCTTACTCGT
* *
48795358 AATCACATATCGATGCCAATGTATTAAACATGGTCCTACCATCACACACATATCAA
1 AATCACATATCGATGCCAATATAGTAAACATGGTCCTA-C-TCACACACATATCAA
* * *
48795414 AATCACATATCGATGCCACTATAGTAAACATGGTCTTACTCGCACACATAT
1 AATCACATATCGATGCCAATATAGTAAACATGGTCCTACTCACACACATAT
48795465 ATCGAAGCCA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 11 0.24
55 1 0.02
56 34 0.74
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.26
Consensus pattern (54 bp):
AATCACATATCGATGCCAATATAGTAAACATGGTCCTACTCACACACATATCAA
Found at i:48795477 original size:31 final size:32
Alignment explanation
Indices: 48795442--48795502 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
48795432 CTATAGTAAA
*
48795442 CATGGTCTTACTCGCACA-CATATATCGAAGC
1 CATGGTCTTACTCGCACATCACATATCGAAGC
*
48795473 CATGGTCTTACTTGCACATCACATATCGAA
1 CATGGTCTTACTCGCACATCACATATCGAA
48795503 ATCCTATGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (32 bp):
CATGGTCTTACTCGCACATCACATATCGAAGC
Found at i:48796091 original size:15 final size:15
Alignment explanation
Indices: 48796068--48796098 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48796058 TCAAAAATTC
48796068 CAATACAAAACATAT
1 CAATACAAAACATAT
*
48796083 CAATCCAAAACATAT
1 CAATACAAAACATAT
48796098 C
1 C
48796099 TTTCATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:48796585 original size:14 final size:14
Alignment explanation
Indices: 48796568--48796594 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48796558 AAATAACGAA
48796568 AATTTCACACATAT
1 AATTTCACACATAT
48796582 AATTTCACACATA
1 AATTTCACACATA
48796595 ATAAAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTTCACACATAT
Found at i:48802829 original size:31 final size:30
Alignment explanation
Indices: 48802761--48802838 Score: 97
Period size: 29 Copynumber: 2.6 Consensus size: 30
48802751 TCTTGACATA
* *
48802761 TACTGGGCCGAAGCC-TTTCGTTTAACAGT
1 TACTGGGCCGAAGCCTTTTCGATAAACAGT
*
48802790 TACTGGGCCGAAGCCTTTTC-ATAAATCATT
1 TACTGGGCCGAAGCCTTTTCGATAAA-CAGT
48802820 TCACTGGGCCGAAGCCTTT
1 T-ACTGGGCCGAAGCCTTT
48802839 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 18 0.42
30 8 0.19
31 17 0.40
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (30 bp):
TACTGGGCCGAAGCCTTTTCGATAAACAGT
Found at i:48802934 original size:42 final size:42
Alignment explanation
Indices: 48802862--48802953 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
48802852 TAGCCCATAG
* ** *
48802862 GCCCATTTCAATATACCATGCAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATACCATGAAATACCAATGAATGTATGCAA
*
48802904 GCCCATTTCAATAT-CATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATAC-CATGAAATACCAATGAATGTATGCAA
48802946 GCCCATTT
1 GCCCATTT
48802954 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 1 0.02
42 43 0.98
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATACCATGAAATACCAATGAATGTATGCAA
Found at i:48803159 original size:26 final size:26
Alignment explanation
Indices: 48803097--48803338 Score: 330
Period size: 26 Copynumber: 9.5 Consensus size: 26
48803087 GCCTCTTTCA
**
48803097 ATAA-CCCTTTTCGGTAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
*
48803122 A-AAGCCCTTTTCAATAAATTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
* *
48803147 ATAAGCCCCTTTCGATAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
** *
48803173 ATAAGCCCTTTTCGGTAAACTAGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
48803199 A-AAGCCCTTTTCAATAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
* **
48803224 ATAAGCCTTTTTCGGTAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
48803250 A-AAGCCCTTTTCAATAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
**
48803275 ATAAGCCCTTTTCGGTAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
*
48803301 ATAAGCCATTTTCAATAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGC
48803327 ATAAGCCCTTTT
1 ATAAGCCCTTTT
48803339 GCACTTCCTC
Statistics
Matches: 189, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
24 2 0.01
25 64 0.34
26 123 0.65
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
ATAAGCCCTTTTCAATAAACTGGGGC
Found at i:48803204 original size:51 final size:52
Alignment explanation
Indices: 48803097--48803338 Score: 366
Period size: 51 Copynumber: 4.7 Consensus size: 52
48803087 GCCTCTTTCA
** ** *
48803097 ATAA-CCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAATTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGC
* * *
48803147 ATAAGCCCCTTTCGATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGC
*
48803199 A-AAGCCCTTTTCAATAAACTGGGGCATAAGCCTTTTTCGGTAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGC
48803250 A-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGC
1 ATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGC
*
48803301 ATAAGCCATTTTCAATAAACTGGGGCATAAGCCCTTTT
1 ATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
48803339 GCACTTCCTC
Statistics
Matches: 177, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
50 4 0.02
51 117 0.66
52 56 0.32
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (52 bp):
ATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGC
Found at i:48803228 original size:77 final size:77
Alignment explanation
Indices: 48803097--48803338 Score: 362
Period size: 77 Copynumber: 3.2 Consensus size: 77
48803087 GCCTCTTTCA
* **
48803097 ATAA-CCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAATTGGGGCATAAGCCCCTTTCG
1 ATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCATTTTCG
48803161 ATAAACTGGGGC
66 ATAAACTGGGGC
* *
48803173 ATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCTTTTTCG
1 ATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCATTTTCG
*
48803238 GTAAACTGGGGC
66 ATAAACTGGGGC
** **
48803250 A-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCATTTTC
1 ATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCATTTTC
*
48803314 AATAAACTGGGGC
65 GATAAACTGGGGC
48803327 ATAAGCCCTTTT
1 ATAAGCCCTTTT
48803339 GCACTTCCTC
Statistics
Matches: 150, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
76 26 0.17
77 114 0.76
78 10 0.07
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (77 bp):
ATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCATTTTCG
ATAAACTGGGGC
Found at i:48803413 original size:20 final size:20
Alignment explanation
Indices: 48803388--48803474 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
48803378 TTATGAATAC
48803388 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
48803408 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
* *
48803428 ATCGTGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
48803448 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
48803468 ATCATGT
1 ATCATGT
48803475 ATATCATATC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:48804243 original size:27 final size:27
Alignment explanation
Indices: 48804182--48804245 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
48804172 GGTGTATTCA
48804182 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* *
48804209 TCACTTTACCCTACAAGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
48804236 TCTTTTTACC
1 TCATTTTACC
48804246 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:48804306 original size:27 final size:27
Alignment explanation
Indices: 48804276--48804428 Score: 132
Period size: 27 Copynumber: 5.7 Consensus size: 27
48804266 TTTCATCCTA
* * *
48804276 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
**
48804303 CAAGGGTATTTT-GTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
48804329 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * * *
48804356 TGAGGGTGTTTCGGTAATTTCATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
48804382 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* *
48804409 CTAGCGGTGTTTTGGTAATT
1 CAAG-GGTATTTTGGTAATT
48804429 CTACCCTATA
Statistics
Matches: 100, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 23 0.23
27 77 0.77
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:48804397 original size:54 final size:52
Alignment explanation
Indices: 48804279--48804428 Score: 156
Period size: 54 Copynumber: 2.8 Consensus size: 52
48804269 CATCCTACAA
* * * * * * ** *
48804279 GGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTTGTAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAAT-TAGGGTGTTTGGTAATTTCATAAACCAG
48804332 GGGTATTTTGGTAATTTTACAAATTGAGGGTGTTTCGGTAATTTCATAAACCAG
1 GGGTATTTTGGTAATTTTACAAATT-AGGGTGTTT-GGTAATTTCATAAACCAG
* *
48804386 TGGTATTTTGGTAATTTTACAAACTAGCGGTGTTTTGGTAATT
1 GGGTATTTTGGTAATTTTACAAATTAG-GGTG-TTTGGTAATT
48804429 CTACCCTATA
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
53 31 0.38
54 48 0.59
55 3 0.04
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.41
Consensus pattern (52 bp):
GGGTATTTTGGTAATTTTACAAATTAGGGTGTTTGGTAATTTCATAAACCAG
Found at i:48804447 original size:54 final size:54
Alignment explanation
Indices: 48804315--48804428 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
48804305 AGGGTATTTT
** * *
48804315 GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTGTTTCG
1 GTAATTTCATAAACCAGGGGTATTTTGGTAATTTTACAAACTGAGGGTGTTTCG
* *
48804369 GTAATTTCATAAACCAGTGGTATTTTGGTAATTTTACAAACT-AGCGGTGTTTTG
1 GTAATTTCATAAACCAGGGGTATTTTGGTAATTTTACAAACTGAG-GGTGTTTCG
48804423 GTAATT
1 GTAATT
48804429 CTACCCTATA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.04
54 51 0.96
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (54 bp):
GTAATTTCATAAACCAGGGGTATTTTGGTAATTTTACAAACTGAGGGTGTTTCG
Found at i:48804490 original size:27 final size:26
Alignment explanation
Indices: 48804460--48804551 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 26
48804450 GTAATTTCAC
*
48804460 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTT-TA
*
48804487 AATCGAGAGTAAAACAGTAATTCTTTA
1 AATCGAGGGTAAAACAGTAATT-TTTA
* *
48804514 AATCGAGGGTAGAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATT-TTTA
*
48804541 AATCGGGGGTA
1 AATCGAGGGTA
48804552 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (26 bp):
AATCGAGGGTAAAACAGTAATTTTTA
Found at i:48806948 original size:42 final size:42
Alignment explanation
Indices: 48806901--48806992 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
48806891 TGGCCCATAG
* ** *
48806901 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
* *
48806943 GCCCATTTCAATATCATATGAAATACCGATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
48806985 GCCCATTT
1 GCCCATTT
48806993 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:48807238 original size:51 final size:51
Alignment explanation
Indices: 48807138--48807276 Score: 219
Period size: 51 Copynumber: 2.7 Consensus size: 51
48807128 CTCTTTTAAT
* *
48807138 AACTGGGGCA-AAGCCCTTTTCGGTAAATTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTACAATA
48807188 AACTGGGGCATAAG-CCTTTTCGGTAAACTGGGGCATAAGCCCTTTACAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTACAATA
**
48807239 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAAA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAA
48807277 AGCTCTTTTG
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
50 30 0.37
51 33 0.40
52 19 0.23
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTACAATA
Found at i:48807240 original size:26 final size:26
Alignment explanation
Indices: 48807125--48807285 Score: 206
Period size: 26 Copynumber: 6.3 Consensus size: 26
48807115 CTAGAGGCCT
48807125 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
48807149 AGCCCTTTTCGGTAAATTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
48807174 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
48807200 AG-CCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
48807225 AGCCCTTTACAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
48807251 AGCCCTTTTCAATAAACTGGGGCAAA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
48807277 AGCTCTTTT
1 AGCCCTTTT
48807286 GCACTTCCTC
Statistics
Matches: 119, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 54 0.45
26 55 0.46
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:48807360 original size:20 final size:20
Alignment explanation
Indices: 48807335--48807401 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
48807325 TTATGAATAC
48807335 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
48807355 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
48807375 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
48807395 ATCATGT
1 ATCATGT
48807402 ATATCATGGT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:48807407 original size:9 final size:10
Alignment explanation
Indices: 48807352--48807414 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 10
48807342 GCATTTCATA
48807352 CATATCATGT
1 CATATCATGT
* *
48807362 GCATTTCAT-A
1 -CATATCATGT
48807372 CATATCATGT
1 CATATCATGT
*
48807382 GCATATCATAT
1 -CATATCATGT
48807393 CA-ATCATGT
1 CATATCATGT
48807402 -ATATCATGGT
1 CATATCAT-GT
48807412 CAT
1 CAT
48807415 TTTTACCTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
8 1 0.02
9 18 0.44
10 4 0.10
11 18 0.44
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Done.