Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 166 of 770
Found at i:49161438 original size:40 final size:40
Alignment explanation
Indices: 49161389--49161596 Score: 111
Period size: 40 Copynumber: 5.2 Consensus size: 40
49161379 CAGAATTTAA
* * *
49161389 CCGGATATAGCTA-CTAGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TATCTAGCACAAATGCCTTCAGGACATAAC
* * *
49161429 CCGGTTATAGTATCTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATATAGTATCTAGCACAAATGCCTTCAGGACATAAC
* * * * * * * * *
49161469 CCGGATTTATTAACTCGCACCAATGCCTT-TGGGCTTAGC
1 CCGGATATAGTATCTAGCACAAATGCCTTCAGGACATAAC
* * * * **
49161508 CC-GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTATCTAGCACAAATGCCTTCAGGA-CATAAC
* * * *
49161548 CCGGATATAGTCA-CTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGT-ATC-TAGCACAAATGCCTTCAGGACATAAC
49161589 CCGGATAT
1 CCGGATAT
49161597 CATTCGAATA
Statistics
Matches: 136, Mismatches: 24, Indels: 15
0.78 0.14 0.09
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 67 0.49
41 31 0.23
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTATCTAGCACAAATGCCTTCAGGACATAAC
Found at i:49161533 original size:39 final size:40
Alignment explanation
Indices: 49161436--49161545 Score: 125
Period size: 39 Copynumber: 2.8 Consensus size: 40
49161426 AGCCCGGTTA
* * *
49161436 TAGTATCTCGCACAAATGCCTTCAGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGAAAT
* * * * *
49161476 TATTAACTCGCACCAATGCCTT-TGGGCTTAGCCCGAAAT
1 TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGAAAT
49161515 TAGTAACTCGCACAAATGCCTTC-GGATCTTA
1 TAGTAACTCGCACAAATGCCTTCAGGA-CTTA
49161546 GTCCGGATAT
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
39 34 0.60
40 23 0.40
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGAAAT
Found at i:49162311 original size:2 final size:2
Alignment explanation
Indices: 49162304--49162335 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
49162294 ATGTGCAAAC
49162304 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49162336 GTGCAAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49164568 original size:25 final size:25
Alignment explanation
Indices: 49164540--49164609 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
49164530 CTCTTTTAAT
*
49164540 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
49164565 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
49164590 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
49164610 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:49166573 original size:40 final size:39
Alignment explanation
Indices: 49166483--49166707 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 39
49166473 TCGAATGATG
* * * *
49166483 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
49166523 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
49166563 TTCGGGCTAAG-CTCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
* *
49166602 TCCGGGTTAAGTCCTGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTAAA
* *
49166642 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49166683 -CCGAGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
49166708 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.21
40 111 0.71
41 12 0.08
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49173732 original size:40 final size:40
Alignment explanation
Indices: 49173645--49173830 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
49173635 ATAACCACAA
* *
49173645 GCAC-AATGCCTTCGGGTCTTAACCCGG-TATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
49173683 GCACAAATGCCTTCAGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
49173723 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
49173763 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
49173803 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
49173831 GTATCATTCA
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 4 0.03
39 21 0.16
40 108 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:49173774 original size:80 final size:79
Alignment explanation
Indices: 49173625--49173830 Score: 301
Period size: 80 Copynumber: 2.6 Consensus size: 79
49173615 TTCTTGGAAT
* * *
49173625 TTAG-CCGGACATAACCACAAGCAC-AATGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
49173688 AATGCCTTCAGGTC
66 AATGCCTTCAGGTC
*
49173702 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCA
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGG-TATAGCAACTCGCA
*
49173766 CAAATGCCTTCGGGTC
64 CAAATGCCTTCAGGTC
* * *
49173782 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGG
49173831 GTATCATTCA
Statistics
Matches: 116, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
77 5 0.04
78 15 0.13
79 23 0.20
80 72 0.62
81 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (79 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
AATGCCTTCAGGTC
Found at i:49177041 original size:40 final size:40
Alignment explanation
Indices: 49176938--49177090 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
49176928 TTCGAATGGT
* * * *
49176938 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
49176979 ATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTA-TCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* * *
49177019 AACCGGATTAAGTCCCGAAGGCATTTGTTCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
49177059 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
49177091 ATCACTATAA
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 65 0.70
41 27 0.29
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:49177104 original size:80 final size:81
Alignment explanation
Indices: 49176946--49177094 Score: 212
Period size: 80 Copynumber: 1.9 Consensus size: 81
49176936 GTATCCGGGC
* *
49176946 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGA
* *
49177011 GTTATCAAAACCGGAT
66 ATCATCAAAACCGGAT
* * *
49177027 TAAGTCCCGAAGGCATTTGTTC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCG
49177090 AATCA
65 AATCA
49177095 CTATAACCGG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.02
80 39 0.65
81 20 0.33
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (81 bp):
TAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGA
ATCATCAAAACCGGAT
Found at i:49177105 original size:40 final size:40
Alignment explanation
Indices: 49176938--49177118 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
49176928 TTCGAATGGT
* * * *
49176938 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAA-TTACTAA
*
49176979 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTA-TCAA
1 ATCCGGGCT-AATTCCCGAAGGCATTTGTGCGAATTACT-AA
* ** * * *
49177019 AACCGGATTAAGTCCCGAAGGCATTTGTTCGAGTTACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAATTACTAA
* *
49177059 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAATTACTA-A
49177100 A-CCGGGC-AATGTCCCGAAG
1 ATCCGGGCTAAT-TCCCGAAG
49177119 ACAATCGAGT
Statistics
Matches: 117, Mismatches: 17, Indels: 13
0.80 0.12 0.09
Matches are distributed among these distances:
39 4 0.03
40 82 0.70
41 31 0.26
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAATTACTAA
Found at i:49177114 original size:80 final size:80
Alignment explanation
Indices: 49176940--49177118 Score: 202
Period size: 80 Copynumber: 2.2 Consensus size: 80
49176930 CGAATGGTAT
* *
49176940 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGC-AAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
49177005 GTGCGAGTTATCAAAA
65 GTGCGAATCATCAAAA
** * * *
49177021 CCGGATTAAGTCCCGAAGGCATTTGTTC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGG-GCAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
*
49177084 TGTGCGAATCA-CTATAA
64 TGTGCGAATCATC-AAAA
49177101 CCGGGCAATGTCCCGAAG
1 CCGGGCAA-GTCCCGAAG
49177119 ACAATCGAGT
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
79 4 0.05
80 55 0.67
81 23 0.28
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
CCGGGCAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATCATCAAAA
Found at i:49181329 original size:40 final size:40
Alignment explanation
Indices: 49181245--49181469 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
49181235 TCGAATGATG
* * * *
49181245 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
49181285 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49181325 TCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
49181364 TCCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
49181404 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49181445 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49181470 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.71
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49181487 original size:80 final size:79
Alignment explanation
Indices: 49181301--49181502 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 79
49181291 CTAAGATCCG
** * *
49181301 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTGGTGCGAGTTACTAAATC
*
49181366 CAGGCTAAGTCCCG
66 CAGGCTAAGTCCCA
* * *
49181380 AAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTGGTGCGAGTTACTA-AA
* *
49181445 -CCGGGCTATGTCCCA
64 TCCAGGCTAAGTCCCA
* *
49181460 AAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 AAGGCATTTGAACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
49181503 TACGTGATTC
Statistics
Matches: 108, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
79 46 0.43
80 60 0.56
81 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTGGTGCGAGTTACTAAATC
CAGGCTAAGTCCCA
Found at i:49183034 original size:27 final size:27
Alignment explanation
Indices: 49182992--49183269 Score: 362
Period size: 27 Copynumber: 10.3 Consensus size: 27
49182982 TGCTACAGCA
* * *
49182992 GTATTTCAGTATTTCTACCCTATAAGG
1 GTATTTCGGTAATTCTACCCTACAAGG
*
49183019 GTATTTCGGTAATTCTATCCTACAAGG
1 GTATTTCGGTAATTCTACCCTACAAGG
* *
49183046 GTATTTCAGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAAGG
49183073 GTATTTCGGTAATTCTACCCTAC-AGG
1 GTATTTCGGTAATTCTACCCTACAAGG
* *
49183099 GTTATTTCAGTAATTCTACCCTACAGGG
1 G-TATTTCGGTAATTCTACCCTACAAGG
*
49183127 GTATTTCGGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAAGG
* *
49183154 GTATTTCGATAATTTTACCCTAC-AGG
1 GTATTTCGGTAATTCTACCCTACAAGG
** * *
49183180 GTTATTTTAGTAATTCTATCCTACAGGG
1 G-TATTTCGGTAATTCTACCCTACAAGG
*
49183208 GTATTTCGGTATTTCTACCCTACAAGG
1 GTATTTCGGTAATTCTACCCTACAAGG
* *
49183235 GTATTTTGGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAAGG
49183262 GTATTTCG
1 GTATTTCG
49183270 ATATTTTACA
Statistics
Matches: 217, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 6 0.03
27 205 0.94
28 6 0.03
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GTATTTCGGTAATTCTACCCTACAAGG
Found at i:49183105 original size:81 final size:81
Alignment explanation
Indices: 49182963--49183268 Score: 416
Period size: 81 Copynumber: 3.8 Consensus size: 81
49182953 ATTTACCCTA
* * ** ** * * * *
49182963 GGGTATCTCGGTAATTCCATGCTACAGCAGTATTTCAGTATTTCTACCCTATAAGGG-TATTTCG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTA-CAGGGTTATTTCA
*
49183027 GTAATTCTATCCTACAA
65 GTAATTCTATCCTACAG
*
49183044 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTCAG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTCAG
*
49183109 TAATTCTACCCTACAG
66 TAATTCTATCCTACAG
* * *
49183125 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTACAGGGTTATTTTAG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTCAG
49183190 TAATTCTATCCTACAG
66 TAATTCTATCCTACAG
* * * *
49183206 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTC
49183269 GATATTTTAC
Statistics
Matches: 199, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
80 4 0.02
81 195 0.98
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTCAG
TAATTCTATCCTACAG
Found at i:49183303 original size:81 final size:78
Alignment explanation
Indices: 49182992--49183328 Score: 297
Period size: 81 Copynumber: 4.2 Consensus size: 78
49182982 TGCTACAGCA
* * * * *
49182992 GTATTTCAGTATTTCTACCCTATAAGGG-TATTTCGGTAATTCTATCCTACAAGGGTATTTC-AG
1 GTATTTCGGTAATTCTACCCTA-CAGGGTTATTTCAGTAATTCTA--C-ATAAGGGTATTTCGA-
49183055 TAATTCTACCCTACAGGG
61 TAATTCTACCCTACAGGG
* *
49183073 GTATTTCGGTAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTA
1 GTATTTCGGTAATTCTACCCTACAGGGTTATTTCAGTAATTCTA-CATA-A-GGGTATTTCGATA
49183138 ATTCTACCCTACAGGG
63 ATTCTACCCTACAGGG
* * * * *
49183154 GTATTTCGATAATTTTACCCTACAGGGTTATTTTAGTAATTCTATCCTACAGGGGTATTTCGGTA
1 GTATTTCGGTAATTCTACCCTACAGGGTTATTTCAGTAATTCTA-CATA-A-GGGTATTTCGATA
* *
49183219 TTTCTACCCTACAAGG
63 ATTCTACCCTACAGGG
* * * *
49183235 GTATTTTGGTAATTCTACCCTACAGGGGTATTTC-G-ATATTTTACAAATTAAGAGTATTTCGAT
1 GTATTTCGGTAATTCTACCCTACAGGGTTATTTCAGTA-ATTCTAC--A-TAAGGGTATTTCGAT
***
49183298 AATTTCTAAAAT-CAGGG
62 AA-TTCTACCCTACAGGG
*
49183315 GTATTTTGGTAATT
1 GTATTTCGGTAATT
49183329 TTGGAAACCA
Statistics
Matches: 220, Mismatches: 27, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
79 3 0.01
80 42 0.19
81 173 0.79
82 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (78 bp):
GTATTTCGGTAATTCTACCCTACAGGGTTATTTCAGTAATTCTACATAAGGGTATTTCGATAATT
CTACCCTACAGGG
Found at i:49183305 original size:54 final size:51
Alignment explanation
Indices: 49182992--49183301 Score: 232
Period size: 54 Copynumber: 5.7 Consensus size: 51
49182982 TGCTACAGCA
* * *
49182992 GTATTTC-AGTATTTCTACCCTATAAGGGTATTTCGGTAATTCTATCCTACAAGG
1 GTATTTCGA-TATTT-TA-CCT-TAAGGGTATTTCGATAATTCTACCCTACAGGG
* * *
49183046 GTATTTC-AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGG
1 GTATTTCGA-T-ATTTTACCTTA-A-GGGTATTTCGATAATTCTACCCTACAGGG
* * * *
49183100 TTATTTC-AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGG
1 GTATTTCGA-T-ATTTTACCTTA-A-GGGTATTTCGATAATTCTACCCTACAGGG
* * *
49183154 GTATTTCGATAATTTTACCCTACAGGGTTATTT-TAGTAATTCTATCCTACAGGG
1 GTATTTCGAT-ATTTTACCTTA-AGGG-TATTTCGA-TAATTCTACCCTACAGGG
* * * *
49183208 GTATTTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGG
1 GTATTTCGATATTT-TA-CCT-TAAGGGTATTTCGATAATTCTACCCTACAGGG
* *
49183262 GTATTTCGATATTTTACAAATTAAGAGTATTTCGATAATT
1 GTATTTCGATATTTTAC--CTTAAGGGTATTTCGATAATT
49183302 TCTAAAATCA
Statistics
Matches: 222, Mismatches: 22, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
52 3 0.01
53 27 0.12
54 181 0.82
55 10 0.05
56 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (51 bp):
GTATTTCGATATTTTACCTTAAGGGTATTTCGATAATTCTACCCTACAGGG
Found at i:49183318 original size:27 final size:27
Alignment explanation
Indices: 49183257--49183357 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
49183247 TTCTACCCTA
49183257 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGGGTATTTCGATAATTTTACAAAT
* * *
49183283 TAAGAGTATTTCGATAATTTCTA-AAAT
1 CAGGGGTATTTCGATAATTT-TACAAAT
* * ** *
49183310 CAGGGGTATTTTGGTAATTTTGGAAAC
1 CAGGGGTATTTCGATAATTTTACAAAT
*
49183337 CAAGGGTATTTC-AGTAATTTT
1 CAGGGGTATTTCGA-TAATTTT
49183358 GTAAATCGAG
Statistics
Matches: 58, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
26 13 0.22
27 43 0.74
28 2 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTCGATAATTTTACAAAT
Found at i:49183598 original size:27 final size:27
Alignment explanation
Indices: 49183350--49183587 Score: 323
Period size: 27 Copynumber: 8.8 Consensus size: 27
49183340 GGGTATTTCA
* *
49183350 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * **
49183377 ATAATTCTGTAAATTGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
49183404 GTAATTCTGTAAATCGATGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
49183431 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
49183458 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
49183485 GTAATTTTATAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49183512 GTAATTCTATAAATCGAGGCTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* **
49183539 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
49183566 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
49183588 CTTTGGTAAT
Statistics
Matches: 187, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 187 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:49183625 original size:81 final size:80
Alignment explanation
Indices: 49183350--49183614 Score: 298
Period size: 81 Copynumber: 3.3 Consensus size: 80
49183340 GGGTATTTCA
* * * * * *
49183350 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTATAAATCGAGGG-CAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
49183415 AATCGATGGTAAAATG
65 AATCGAGGGTAAAATG
* * ** * *
49183431 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTATA
1 GTAATTCTATAAATCGAGGG-CAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
49183496 AATCGAGAGTAAAATG
65 AATCGAGGGTAAAATG
*
49183512 GTAATTCTATAAATCGA-GGCTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTCTATAAATCGAGGGC--AAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
***
49183576 AAATCGAGGGTACTTTG
64 AAATCGAGGGTAAAATG
* * *
49183593 GTAATTTTACAAATTGAGGGCA
1 GTAATTCTATAAATCGAGGGCA
49183615 TTTCAGTAAT
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.02
81 149 0.96
82 3 0.02
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (80 bp):
GTAATTCTATAAATCGAGGGCAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAATG
Found at i:49188902 original size:57 final size:57
Alignment explanation
Indices: 49188839--49188952 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
49188829 ACAATATGAC
*
49188839 CCAAAAAACCA-ACCTCTTGTAACCAGAATTCACATTTACTGAACTTTGCATACAATT
1 CCAAAAAA-CAGACCTCTCGTAACCAGAATTCACATTTACTGAACTTTGCATACAATT
49188896 CCAAAAAACAGACCTCTCGTAACCAGAATTCACATTTACTGAACTTTGCATACAATT
1 CCAAAAAACAGACCTCTCGTAACCAGAATTCACATTTACTGAACTTTGCATACAATT
49188953 GCTTATCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
56 2 0.04
57 53 0.96
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.27
Consensus pattern (57 bp):
CCAAAAAACAGACCTCTCGTAACCAGAATTCACATTTACTGAACTTTGCATACAATT
Found at i:49191857 original size:37 final size:37
Alignment explanation
Indices: 49191807--49191921 Score: 221
Period size: 37 Copynumber: 3.1 Consensus size: 37
49191797 TTATTACGAA
49191807 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
49191844 GTCTTACTCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
49191881 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
49191918 GTCT
1 GTCT
49191922 CACCTGGAAC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 76 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:49192032 original size:48 final size:48
Alignment explanation
Indices: 49191974--49192077 Score: 172
Period size: 48 Copynumber: 2.2 Consensus size: 48
49191964 TGTTACAACA
*
49191974 TTCACATTAGCCATTCGGCTTTACTACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
* * *
49192022 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
49192070 TTCACATT
1 TTCACATT
49192078 CATCACATCG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:49192123 original size:49 final size:49
Alignment explanation
Indices: 49192070--49192306 Score: 372
Period size: 49 Copynumber: 4.9 Consensus size: 49
49192060 ACACATATGT
*
49192070 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACC
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACC
* * * *
49192119 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTATATACTCT
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACC
*
49192166 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACA-C
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACC
*
49192214 TTCCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACT
1 TT-CACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACC
*
49192264 TTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
49192307 CATCTCATAC
Statistics
Matches: 175, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
47 43 0.25
48 2 0.01
49 128 0.73
50 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (49 bp):
TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACC
Found at i:49192169 original size:96 final size:97
Alignment explanation
Indices: 49192069--49192306 Score: 390
Period size: 96 Copynumber: 2.5 Consensus size: 97
49192059 CACACATATG
*
49192069 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTT-CACATTCATCAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACA-CTTCCACATTCATCAC
* *
49192133 ATCGGCCATTAGGCCTTATCAC-GTATATACTC
65 ATCGGCCATTAGGCCTTATCACAATATATACAC
*
49192165 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTCCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACA
*
49192230 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TCGGCCATTAGGCCTTATCACA-ATATATACAC
*
49192263 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
49192307 CATCTCATAC
Statistics
Matches: 132, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
95 3 0.02
96 79 0.60
98 50 0.38
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (97 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATATACAC
Found at i:49210851 original size:44 final size:44
Alignment explanation
Indices: 49210796--49210904 Score: 209
Period size: 44 Copynumber: 2.5 Consensus size: 44
49210786 GCTATAATAG
49210796 TATCGCACACTTAGTGCCATTACAATAAACCAAATTAATATCGC
1 TATCGCACACTTAGTGCCATTACAATAAACCAAATTAATATCGC
49210840 TATCGCACACTTAGTGCCATTACAATAAACCAAATTAATATCGC
1 TATCGCACACTTAGTGCCATTACAATAAACCAAATTAATATCGC
*
49210884 TATCGCACACATAGTGCCATT
1 TATCGCACACTTAGTGCCATT
49210905 TATTCAGCTA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.28
Consensus pattern (44 bp):
TATCGCACACTTAGTGCCATTACAATAAACCAAATTAATATCGC
Found at i:49220198 original size:42 final size:42
Alignment explanation
Indices: 49220134--49220277 Score: 198
Period size: 42 Copynumber: 3.4 Consensus size: 42
49220124 TAAGATTTAT
* * * *
49220134 GTGTGAGACCATATTTGAGATATGGCATCGATATGAAACTTC
1 GTGTAAGACCATATCTGGGATATGGAATCGATATGAAACTTC
* *
49220176 GTGTCAGACCATATCTGGGATATAGAATCGATATGAAACTTC
1 GTGTAAGACCATATCTGGGATATGGAATCGATATGAAACTTC
* *
49220218 GTGTAAGACCATATCTGGGTTATGGAATCGGTATGAAACTTC
1 GTGTAAGACCATATCTGGGATATGGAATCGATATGAAACTTC
* *
49220260 GTGTAAGACTATAGCTGG
1 GTGTAAGACCATATCTGG
49220278 CCTATTCAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGAATCGATATGAAACTTC
Found at i:49224900 original size:29 final size:29
Alignment explanation
Indices: 49224868--49225026 Score: 223
Period size: 29 Copynumber: 5.5 Consensus size: 29
49224858 ATAGTGAATC
49224868 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
49224897 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
49224927 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
49224956 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * *
49224984 CGCACACTTAGTGCTGTACATTTTAAACC
1 CGCACACTTAGTGCTATATATTTTCAGCT
49225013 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49225027 CAATCTTGTC
Statistics
Matches: 119, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
27 2 0.02
28 21 0.18
29 66 0.55
30 30 0.25
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:49224994 original size:57 final size:57
Alignment explanation
Indices: 49224868--49225026 Score: 230
Period size: 59 Copynumber: 2.8 Consensus size: 57
49224858 ATAGTGAATC
*
49224868 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA--TTCAACT
49224927 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTC-AACT
* * * * *
49224984 CGCACACTTAGTGCTGTACATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGC
49225027 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
56 2 0.02
57 41 0.44
59 50 0.54
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTCAACT
Found at i:49228024 original size:40 final size:40
Alignment explanation
Indices: 49227979--49228145 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
49227969 CGGAATATAA
49227979 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49228019 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49228059 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49228099 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49228138 CCGGATAT
1 CCGGATAT
49228146 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49236031 original size:40 final size:40
Alignment explanation
Indices: 49235986--49236152 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
49235976 CGGAATATAA
49235986 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49236026 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49236066 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49236106 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49236145 CCGGATAT
1 CCGGATAT
49236153 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49244447 original size:81 final size:81
Alignment explanation
Indices: 49244308--49244522 Score: 304
Period size: 81 Copynumber: 2.7 Consensus size: 81
49244298 CCCTAAAATA
* * * * *
49244308 GGTAAAATGAACGTAATGCCCTTGTAGGGTAAAATAACCGTAATGCCCCTATAGGGTAAAATGAT
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGAT
* *
49244373 TGTAATACCCCTGTAC
66 CGTAATACCCCTATAC
49244389 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGAT
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGAT
*
49244454 CGTAATACCCCTATAG
66 CGTAATACCCCTATAC
* * * * * *
49244470 GGTAAAATAACCGTAATGCCCCTATAGGATAAAATGACTGTAATATCCCTGTA
1 GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAATACCCCTGTA
49244523 TTTTAAAATG
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 120 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (81 bp):
GGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAATACCCCTGTAAGGTAAAATGAT
CGTAATACCCCTATAC
Found at i:49244512 original size:27 final size:27
Alignment explanation
Indices: 49244308--49244513 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
49244298 CCCTAAAATA
* * *
49244308 GGTAAAATGAACGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
49244335 GGTAAAATAACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
** * * *
49244362 GGTAAAATGATTGTAATACCCCTGTAC
1 GGTAAAATGACCGTAATGCCCCTATAG
*
49244389 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* * * *
49244416 GGTAAAATAACCGTAATACCCCTGTAA
1 GGTAAAATGACCGTAATGCCCCTATAG
* *
49244443 GGTAAAATGATCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
*
49244470 GGTAAAATAACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTATAG
* *
49244497 GATAAAATGACTGTAAT
1 GGTAAAATGACCGTAAT
49244514 ATCCCTGTAT
Statistics
Matches: 152, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTATAG
Found at i:49244918 original size:27 final size:27
Alignment explanation
Indices: 49244880--49244931 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
49244870 ATTACACTGT
* *
49244880 ACTAATACTGTATTGGGCTTAGGCCAC
1 ACTAATACTGTATAGGGCTAAGGCCAC
*
49244907 ACTATTACTGTATAGGGCTAAGGCC
1 ACTAATACTGTATAGGGCTAAGGCC
49244932 CAGACTGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (27 bp):
ACTAATACTGTATAGGGCTAAGGCCAC
Found at i:49245226 original size:2 final size:2
Alignment explanation
Indices: 49245219--49245243 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49245209 TGGGCTTTGG
49245219 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
49245244 TCTTAAACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49247612 original size:50 final size:47
Alignment explanation
Indices: 49247452--49247628 Score: 180
Period size: 48 Copynumber: 3.7 Consensus size: 47
49247442 TTTGTGTGCC
*
49247452 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATT-TGAGAGCT
* * * ***
49247498 AATGTGAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGATTTGAGAGCT
* *
49247546 AGTGTAAGACTATGTCTGGAACATGGCATCGGCACGGATTTGTAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GATTTG--AGAGCT
* *
49247596 AGTGTAAGACCATGTCTAGGACATGACATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
49247629 TTCGATTTTG
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
46 7 0.07
47 16 0.15
48 46 0.44
49 1 0.01
50 35 0.33
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATTTGAGAGCT
Found at i:49247618 original size:98 final size:94
Alignment explanation
Indices: 49247452--49247628 Score: 232
Period size: 98 Copynumber: 1.8 Consensus size: 94
49247442 TTTGTGTGCC
* * *
49247452 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAATGTGAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTCTAG
*
49247517 GACATGGCATCGGCATTGAGACGAGAGCT
66 GACATGACATCGGCATTGAGACGAGAGCT
* *
49247546 AGTGTAAGACTATGTCTGGAACATGGCATCGG-CACGGATT-TGTAAGAGCTAGTGTAAGACCAT
1 AGTGTAAGAC-ATGTCTGGAACAT-GCATCGGCCAC--ATTATG--AGAGCCAATGTAAGACCAT
49247609 GTCTAGGACATGACATCGGC
60 GTCTAGGACATGACATCGGC
49247629 TTCGATTTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
94 10 0.14
95 15 0.21
96 9 0.13
97 3 0.04
98 34 0.48
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTCTAG
GACATGACATCGGCATTGAGACGAGAGCT
Found at i:49249053 original size:40 final size:40
Alignment explanation
Indices: 49249008--49249175 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
49248998 CGGAATATAA
49249008 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
49249048 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
49249088 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49249128 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
49249168 CCGGATAT
1 CCGGATAT
49249176 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49249158 original size:80 final size:80
Alignment explanation
Indices: 49249024--49249173 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
49249014 ATAATCACGT
*
49249024 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
49249088 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
49249104 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
49249167 CCCGGAT
64 CCCGGAT
49249174 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:49257055 original size:40 final size:40
Alignment explanation
Indices: 49257010--49257177 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
49257000 CGGAATATAA
49257010 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
49257050 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
49257090 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49257130 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
49257170 CCGGATAT
1 CCGGATAT
49257178 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49257160 original size:80 final size:80
Alignment explanation
Indices: 49257026--49257175 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
49257016 ATAATCACGT
*
49257026 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
49257090 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
49257106 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
49257169 CCCGGAT
64 CCCGGAT
49257176 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:49261180 original size:20 final size:20
Alignment explanation
Indices: 49261141--49261258 Score: 103
Period size: 22 Copynumber: 5.7 Consensus size: 20
49261131 TACTCTAATA
*
49261141 TAGCCTTTATGGCACATTCTGT
1 TAGCCTTTGTGG--CATTCTGT
* *
49261163 TAGTCTTTGTGGCATTCTAAT
1 TAGCCTTTGTGGCATTCT-GT
* *
49261184 ATAGCCTTTGTGCCATTCAGT
1 -TAGCCTTTGTGGCATTCTGT
49261205 TAGCCTTTGTGGCATTCTGAT
1 TAGCCTTTGTGGCATTCTG-T
* * *
49261226 ATGGCCTTTCTGGCTTTCTGT
1 -TAGCCTTTGTGGCATTCTGT
49261247 TAG-CTTTGTGGC
1 TAGCCTTTGTGGC
49261259 GTACTATGTA
Statistics
Matches: 78, Mismatches: 14, Indels: 11
0.76 0.14 0.11
Matches are distributed among these distances:
19 8 0.10
20 25 0.32
21 4 0.05
22 41 0.53
ACGTcount: A:0.14, C:0.20, G:0.22, T:0.43
Consensus pattern (20 bp):
TAGCCTTTGTGGCATTCTGT
Found at i:49261213 original size:42 final size:41
Alignment explanation
Indices: 49261134--49261258 Score: 151
Period size: 42 Copynumber: 3.0 Consensus size: 41
49261124 CATGGCTTAC
49261134 TCTAATATAGCCTTTATGGCACATTCTGTTAGTCTTTGTGGCAT
1 TCTAATATAGCCTTTAT-GC-CATTCTGTTAG-CTTTGTGGCAT
* *
49261178 TCTAATATAGCCTTTGTGCCATTCAGTTAGCCTTTGTGGCAT
1 TCTAATATAGCCTTTATGCCATTCTGTTAG-CTTTGTGGCAT
* * * * *
49261220 TCTGATATGGCCTTTCTGGCTTTCTGTTAGCTTTGTGGC
1 TCTAATATAGCCTTTATGCCATTCTGTTAGCTTTGTGGC
49261259 GTACTATGTA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
41 9 0.12
42 45 0.62
43 2 0.03
44 16 0.22
ACGTcount: A:0.16, C:0.20, G:0.21, T:0.43
Consensus pattern (41 bp):
TCTAATATAGCCTTTATGCCATTCTGTTAGCTTTGTGGCAT
Found at i:49261278 original size:25 final size:27
Alignment explanation
Indices: 49261250--49261313 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 27
49261240 TTTCTGTTAG
*
49261250 CTTTGTGGCGTACTATGTATA-ATT-C
1 CTTTGTGGCGTACTATCTATATATTGC
* * *
49261275 CTTTATGGTGTA--ATCTATATGTTGC
1 CTTTGTGGCGTACTATCTATATATTGC
49261300 CTTTGTGGCGTACT
1 CTTTGTGGCGTACT
49261314 CTTTCTGGCC
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
23 6 0.21
24 2 0.07
25 21 0.72
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.45
Consensus pattern (27 bp):
CTTTGTGGCGTACTATCTATATATTGC
Found at i:49262353 original size:16 final size:17
Alignment explanation
Indices: 49262327--49262358 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
49262317 ATGCCCATCT
49262327 ATAGTTTTATTTTCATG
1 ATAGTTTTATTTTCATG
49262344 ATAG-TTTATTTTCAT
1 ATAGTTTTATTTTCAT
49262359 ATTGTTGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.25, C:0.06, G:0.09, T:0.59
Consensus pattern (17 bp):
ATAGTTTTATTTTCATG
Found at i:49265435 original size:22 final size:22
Alignment explanation
Indices: 49265410--49265452 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
49265400 TCTCCCTATT
49265410 TTGCTACCATTTTACTATTATG
1 TTGCTACCATTTTACTATTATG
* *
49265432 TTGCTACTATTTTATTATTAT
1 TTGCTACCATTTTACTATTAT
49265453 TTGGATATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.56
Consensus pattern (22 bp):
TTGCTACCATTTTACTATTATG
Found at i:49265515 original size:30 final size:30
Alignment explanation
Indices: 49265479--49265541 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
49265469 ACTTATTTTA
49265479 TTGTTAATTTTATTATTATTTTAAAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
* * *
49265509 TTGTTAATTTTGTTATTATTTTAGAGGTAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
49265539 TTG
1 TTG
49265542 CTTGTTACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGGCAT
Found at i:49265660 original size:2 final size:2
Alignment explanation
Indices: 49265653--49265685 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
49265643 TTTGATGTAT
*
49265653 TA TA TA TA TA TA TA TA TA TA TA TA AA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
49265686 AAAAATTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:49273776 original size:30 final size:29
Alignment explanation
Indices: 49273682--49273783 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
49273672 TATAGTGAAT
* * *
49273682 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
49273711 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
49273739 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
49273769 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
49273784 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:49281642 original size:30 final size:29
Alignment explanation
Indices: 49281548--49281649 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
49281538 TATAGTGAAT
* * *
49281548 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
49281577 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
49281605 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
49281635 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
49281650 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:49283343 original size:6 final size:7
Alignment explanation
Indices: 49283319--49283352 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
49283309 CACTAACAAA
*
49283319 TTTTGAT
1 TTTTTAT
49283326 TTCTTTAT
1 TT-TTTAT
49283334 TTTTTAT
1 TTTTTAT
49283341 TTTTTAT
1 TTTTTAT
49283348 TTTTT
1 TTTTT
49283353 CTTTCTAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:49283346 original size:14 final size:15
Alignment explanation
Indices: 49283319--49283358 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
49283309 CACTAACAAA
*
49283319 TTTTGATTTCTTTAT
1 TTTTTATTTCTTTAT
49283334 TTTTTATTT-TTTAT
1 TTTTTATTTCTTTAT
*
49283348 TTTTTCTTTCT
1 TTTTTATTTCT
49283359 AACACTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTTTATTTCTTTAT
Found at i:49285468 original size:6 final size:6
Alignment explanation
Indices: 49285457--49285489 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
49285447 TCCTCTTATC
*
49285457 TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
49285490 AAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:49285495 original size:18 final size:18
Alignment explanation
Indices: 49285457--49285496 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
49285447 TCCTCTTATC
* **
49285457 TTTTTATTTTTATTTTTA
1 TTTTTATTTTCATTTAAA
49285475 TTTTTATTTTCATTTAAA
1 TTTTTATTTTCATTTAAA
49285493 TTTT
1 TTTT
49285497 ATTATTTCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTCATTTAAA
Found at i:49288432 original size:17 final size:17
Alignment explanation
Indices: 49288410--49288450 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 17
49288400 TTCTCTTTGC
49288410 ATTAGTTTAATTAGTTA
1 ATTAGTTTAATTAGTTA
49288427 ATTAG--T--TTAGTTA
1 ATTAGTTTAATTAGTTA
49288440 ATTAGTTTAAT
1 ATTAGTTTAAT
49288451 AAAAAACTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 8
0.71 0.00 0.29
Matches are distributed among these distances:
13 12 0.60
15 2 0.10
17 6 0.30
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (17 bp):
ATTAGTTTAATTAGTTA
Found at i:49288438 original size:13 final size:13
Alignment explanation
Indices: 49288420--49288448 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
49288410 ATTAGTTTAA
49288420 TTAGTTAATTAGT
1 TTAGTTAATTAGT
49288433 TTAGTTAATTAGT
1 TTAGTTAATTAGT
49288446 TTA
1 TTA
49288449 ATAAAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:49292380 original size:42 final size:41
Alignment explanation
Indices: 49292214--49292380 Score: 136
Period size: 42 Copynumber: 4.0 Consensus size: 41
49292204 TTGGCATCAG
* * * * * *
49292214 TATGAGTTATCATGTAAGATCATATCTTGGATATGGCGTTTA
1 TATGAGAT-TCATGTAAGACCATATCTGGGACATGGCATTGA
* ** * *
49292256 TATGAGATTTCGTGTAAGACCATGCCTGGGACATGGCGTCGA
1 TATGAGA-TTCATGTAAGACCATATCTGGGACATGGCATTGA
* * * * *
49292298 AATGAGAATTCGTATAAGACCATATCTGGGATATGACATTGA
1 TATGAG-ATTCATGTAAGACCATATCTGGGACATGGCATTGA
* *
49292340 TGTGAGATTCCATGTAAGACCATGTCTGGGACATGGCATTG
1 TATGAGATT-CATGTAAGACCATATCTGGGACATGGCATTG
49292381 GCATCTTATT
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
41 3 0.03
42 93 0.95
43 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (41 bp):
TATGAGATTCATGTAAGACCATATCTGGGACATGGCATTGA
Found at i:49300817 original size:40 final size:39
Alignment explanation
Indices: 49300706--49300819 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
49300696 GAATGTTCGA
49300706 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* * *
49300745 ATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* *
49300784 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
49300820 GGTTACCATA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 50 0.75
40 17 0.25
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:49300835 original size:40 final size:39
Alignment explanation
Indices: 49300707--49300849 Score: 169
Period size: 39 Copynumber: 3.6 Consensus size: 39
49300697 AATGTTCGAG
* *
49300707 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
49300746 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
49300785 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
49300825 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
49300850 TGTTTTGAAC
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 50 0.56
40 40 0.44
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:49302352 original size:42 final size:42
Alignment explanation
Indices: 49302250--49302457 Score: 155
Period size: 42 Copynumber: 4.8 Consensus size: 42
49302240 TTACAGATGG
* * * *
49302250 GATTCCGTATAAGACCATATCTAGGATATGGCATCGGTATAAGTA
1 GATTCCGTGTAAGACCATATCTGGGATATGACATC-G-ATATG-A
* * * * *
49302295 TGAGTTATCATGTAAGACCATATTTGGGATATGGCATTGATATGA
1 -GA-TT-CCGTGTAAGACCATATCTGGGATATGACATCGATATGA
* ** * * *
49302340 GATTTCGTGTAAGACCATGCCTGGGAAATGACGTCGAAATGA
1 GATTCCGTGTAAGACCATATCTGGGATATGACATCGATATGA
* * * * *
49302382 GAATCCGTATAAGACCATATCTAGGATATGGCATCGATGTGA
1 GATTCCGTGTAAGACCATATCTGGGATATGACATCGATATGA
* * *
49302424 GATTCCATGTAAGACCATGTCTGGGACATGACAT
1 GATTCCGTGTAAGACCATATCTGGGATATGACAT
49302458 TGGCATCTTA
Statistics
Matches: 126, Mismatches: 34, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
42 87 0.69
43 2 0.02
44 2 0.02
45 1 0.01
46 6 0.05
47 3 0.02
48 25 0.20
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (42 bp):
GATTCCGTGTAAGACCATATCTGGGATATGACATCGATATGA
Found at i:49303132 original size:38 final size:38
Alignment explanation
Indices: 49303090--49303168 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
49303080 TGTATATTCC
49303090 AATTCCATTATGATATGGCCTATGGTTATTGATGATTG
1 AATTCCATTATGATATGGCCTATGGTTATTGATGATTG
49303128 AATTCCATTATGATATGGCCTATGGTTATTGATGATTG
1 AATTCCATTATGATATGGCCTATGGTTATTGATGATTG
49303166 AAT
1 AAT
49303169 GTTGATGAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (38 bp):
AATTCCATTATGATATGGCCTATGGTTATTGATGATTG
Found at i:49308094 original size:39 final size:40
Alignment explanation
Indices: 49307913--49308119 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
49307903 CAATTGAATG
* * ** * **
49307913 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * *
49307953 ATATCCGGGTTAAGACCAGAAGGCCATT-GTGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* *
49307993 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
49308033 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
49308073 CTATCC-GGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
49308112 ATATCCGG
1 ATATCCGG
49308120 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 38 0.27
40 96 0.69
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:49309527 original size:27 final size:27
Alignment explanation
Indices: 49309480--49309601 Score: 88
Period size: 27 Copynumber: 4.4 Consensus size: 27
49309470 GTTCGGGGTG
* *
49309480 TTACAGAAATA-CCCTCAATTTGTAAAA
1 TTACAGAAATACCCCT-GATTTATAAAA
*
49309507 TTACCA-AAATACCCCTGATTTACAAAA
1 TTA-CAGAAATACCCCTGATTTATAAAA
* *
49309534 TTACAGAAATACCCTTGACTTTCTAAAAA
1 TTACAGAAATACCCCTGA-TTTAT-AAAA
* ** * *
49309563 TTATAGAAATACCATTGGTTTACAAAA
1 TTACAGAAATACCCCTGATTTATAAAA
49309590 TTACTA-AAATAC
1 TTAC-AGAAATAC
49309602 TCTTGGTTTG
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
26 2 0.03
27 43 0.56
28 13 0.17
29 19 0.25
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (27 bp):
TTACAGAAATACCCCTGATTTATAAAA
Found at i:49309607 original size:27 final size:28
Alignment explanation
Indices: 49309559--49309610 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
49309549 TGACTTTCTA
*
49309559 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACTAGAAATACCCTTGGTTTAC
*
49309586 AAAATTACTA-AAATACTCTTGGTTT
1 AAAATTACTAGAAATACCCTTGGTTT
49309611 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.37
Consensus pattern (28 bp):
AAAATTACTAGAAATACCCTTGGTTTAC
Found at i:49309728 original size:27 final size:27
Alignment explanation
Indices: 49309664--49309728 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
49309654 ACCCCTAATA
*
49309664 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * * *
49309691 GGCAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
49309718 GGTAAAATGAC
1 GGTAAAATGAC
49309729 GAATATACCC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:49310580 original size:2 final size:2
Alignment explanation
Indices: 49310573--49310608 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
49310563 GCTTCGCCAC
49310573 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49310609 CTGTTCTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49310798 original size:6 final size:6
Alignment explanation
Indices: 49310789--49310975 Score: 134
Period size: 6 Copynumber: 30.3 Consensus size: 6
49310779 TCACATTCAC
* *
49310789 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATTACCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * *
49310839 ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * *
49310888 -TTACCTA ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG -TCACCTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
49310938 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
49310976 AATGTTTCTT
Statistics
Matches: 143, Mismatches: 21, Indels: 34
0.72 0.11 0.17
Matches are distributed among these distances:
5 11 0.08
6 111 0.78
7 13 0.09
8 8 0.06
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:49310816 original size:19 final size:19
Alignment explanation
Indices: 49310792--49310881 Score: 67
Period size: 19 Copynumber: 4.5 Consensus size: 19
49310782 CATTCACATT
49310792 CTGATTCTGTTACCTGATA
1 CTGATTCTGTTACCTGATA
* *
49310811 CTGATTCTGATTCTATTACCTAATT
1 CTGATTCTG------TTACCTGATA
*
49310836 CTGATTCTGGTT--CTGATT
1 CTGATTCT-GTTACCTGATA
49310854 CTGATTCTGTTACCTGATA
1 CTGATTCTGTTACCTGATA
*
49310873 CTAATTCTG
1 CTGATTCTG
49310882 ATTCTGTTAC
Statistics
Matches: 57, Mismatches: 5, Indels: 18
0.71 0.06 0.22
Matches are distributed among these distances:
17 3 0.05
18 13 0.23
19 22 0.39
20 2 0.04
25 16 0.28
26 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (19 bp):
CTGATTCTGTTACCTGATA
Found at i:49310823 original size:25 final size:25
Alignment explanation
Indices: 49310789--49310850 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
49310779 TCACATTCAC
*
49310789 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTTACCTAATACTG
* *
49310814 ATTCTGATTCTATTACCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTG
*
49310839 ATTCTGGTTCTG
1 ATTCTGATTCTG
49310851 ATTCTGATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAATACTG
Found at i:49310853 original size:37 final size:37
Alignment explanation
Indices: 49310805--49310887 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
49310795 ATTCTGTTAC
* * *
49310805 CTGATACTGATTCTGATTCTATTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTAATT
* * *
49310842 CTGGTTCTGATTCTGATTCTGTTACCTGATACTAATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTAATT
49310879 CTGATTCTG
1 CTGATTCTG
49310888 TTACCTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATTACCTAATACTAATT
Found at i:49310881 original size:25 final size:25
Alignment explanation
Indices: 49310851--49310912 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
49310841 TCTGGTTCTG
*
49310851 ATTCTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGTTACCTAATACTA
* *
49310876 ATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTA
49310901 ATTCTGATTCTG
1 ATTCTGATTCTG
49310913 ATTTTGATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAATACTA
Found at i:49310886 original size:62 final size:62
Alignment explanation
Indices: 49310789--49310975 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
49310779 TCACATTCAC
49310789 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGGTTCTG
* * *
49310851 ATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGGTTCTG
* * * * * * *
49310913 ATTTTGATTCTGTCACCTAATTCTGATTCTGATTCTGATT--CTCATTTTGATTCTAGTTCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCT-ATTACCTAATTCTGATTCTGGTTCTG
49310974 AT
1 AT
49310976 AATGTTTCTT
Statistics
Matches: 111, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
61 19 0.17
62 90 0.81
63 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGGTTCTG
Found at i:49310908 original size:37 final size:37
Alignment explanation
Indices: 49310867--49310954 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
49310857 ATTCTGTTAC
* * *
49310867 CTGATACTAATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
*
49310904 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
49310941 CTGATTCTGATTCT
1 CTGATTCTGATTCT
49310955 CATTTTGATT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:49314058 original size:43 final size:43
Alignment explanation
Indices: 49313910--49314059 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
49313900 TACCCCGAAT
* * * *
49313910 ATGGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACATGTAATCACAATA-CAATGCCAATGTCCCAGAC
* * * * *
49313953 AGGGTCTT-CTACGAAATCA-TATA-ATGATGTCAATGTCCCAGAC
1 ATGGTCTTAC-ATGTAATCACAATACA--ATGCCAATGTCCCAGAC
49313996 ATGGTCTTACATGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAATACAATGCCAATGTCCCAGAC
49314039 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACATGTAATCACA
49314060 TCTCGGCAAT
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
42 1 0.01
43 81 0.93
44 4 0.05
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACAATACAATGCCAATGTCCCAGAC
Found at i:49318203 original size:18 final size:18
Alignment explanation
Indices: 49318177--49318222 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
49318167 GTATGAGGAG
*
49318177 CCGTATGGTCGCCCACGC
1 CCGTGTGGTCGCCCACGC
*
49318195 CCGTGTGGTCGTCCACGC
1 CCGTGTGGTCGCCCACGC
49318213 CCGTGTGGTC
1 CCGTGTGGTC
49318223 TAGGGAACGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.07, C:0.39, G:0.33, T:0.22
Consensus pattern (18 bp):
CCGTGTGGTCGCCCACGC
Found at i:49323486 original size:12 final size:12
Alignment explanation
Indices: 49323469--49323493 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49323459 AAGACCATGA
49323469 CCTTTAGCGGCG
1 CCTTTAGCGGCG
49323481 CCTTTAGCGGCG
1 CCTTTAGCGGCG
49323493 C
1 C
49323494 TTTTTTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.36, G:0.32, T:0.24
Consensus pattern (12 bp):
CCTTTAGCGGCG
Found at i:49323601 original size:43 final size:43
Alignment explanation
Indices: 49323481--49323608 Score: 132
Period size: 43 Copynumber: 3.0 Consensus size: 43
49323471 TTTAGCGGCG
* * * * * *
49323481 CCTTTAGCGGCGCTTTTTTTGCAAATGCCACTAAAGACTAGGA
1 CCTTTAGCGGCGCTTTTTTAGCAAACGCCGCTAAAAACAATGA
* * ** *
49323524 CTTTTAGCGGCGC-TTTTAAAAAAACGCCGCTAAAAACCATGA
1 CCTTTAGCGGCGCTTTTTTAGCAAACGCCGCTAAAAACAATGA
* *
49323566 CCTTTAGTGGCGCTTTTTTCGCAAACGCCGCTAAAAACAATGA
1 CCTTTAGCGGCGCTTTTTTAGCAAACGCCGCTAAAAACAATGA
49323609 TCTTAAAAAA
Statistics
Matches: 67, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
CCTTTAGCGGCGCTTTTTTAGCAAACGCCGCTAAAAACAATGA
Found at i:49323950 original size:17 final size:18
Alignment explanation
Indices: 49323923--49323956 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
49323913 ATGCCAAAAT
49323923 GTTGAACTCCATATTCCA
1 GTTGAACTCCATATTCCA
49323941 GTTG-ACTCCATATTCC
1 GTTGAACTCCATATTCC
49323957 CCCACATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (18 bp):
GTTGAACTCCATATTCCA
Found at i:49327918 original size:21 final size:21
Alignment explanation
Indices: 49327872--49327931 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
49327862 CATAAACACT
*
49327872 AACCCTTGA-ACCTTTAACCTCA
1 AACCCTT-ACACC-TTAAACTCA
*
49327894 AACCCTTACACCTTAAACTCC
1 AACCCTTACACCTTAAACTCA
*
49327915 AACCCTAAC-CCTTAAAC
1 AACCCTTACACCTTAAAC
49327932 CCATAATTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.24
21 16 0.47
22 10 0.29
ACGTcount: A:0.35, C:0.40, G:0.02, T:0.23
Consensus pattern (21 bp):
AACCCTTACACCTTAAACTCA
Found at i:49328000 original size:21 final size:22
Alignment explanation
Indices: 49327976--49328056 Score: 94
Period size: 21 Copynumber: 3.6 Consensus size: 22
49327966 ACTCCTAAAC
49327976 CTTAAACCCTAAACT-ATATAT
1 CTTAAACCCTAAACTCATATAT
* * *
49327997 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCCTA---AACTCATATAT
49328022 CTTAAACCCTAAA-TCATATAT
1 CTTAAACCCTAAACTCATATAT
49328043 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
49328057 CTTAAACTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
21 29 0.59
22 2 0.04
24 4 0.08
25 14 0.29
ACGTcount: A:0.43, C:0.26, G:0.01, T:0.30
Consensus pattern (22 bp):
CTTAAACCCTAAACTCATATAT
Found at i:49328012 original size:46 final size:46
Alignment explanation
Indices: 49327960--49328050 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
49327950 CTTCAAATAC
*
49327960 TAGTTAACTCCTAAACCTTAAACCCTAAA-CTATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAATC-ATATATCTTAAACCA
49328006 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
1 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
49328051 CTAAACCTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACCA
Found at i:49328110 original size:25 final size:25
Alignment explanation
Indices: 49328073--49328122 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
49328063 CTATAATGAT
49328073 AATTAATTCGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
*
49328098 AATTAATTTGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
49328123 TACTATCTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (25 bp):
AATTAATTCGATATTTTAAATTCAA
Found at i:49328441 original size:40 final size:42
Alignment explanation
Indices: 49328251--49328459 Score: 268
Period size: 41 Copynumber: 5.1 Consensus size: 42
49328241 GTTATATGAC
* * * *
49328251 TTTTAGTGGCG-TTTTGTCGAAAGCGCCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
*
49328292 TTTTAGCAGCGTTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
49328333 TTTTAGCGGCG-TTTTGCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
* * *
49328374 TTTTAGCGGC-ATTTTGCCAAAAGCGCCGCTATTGCT-TTGT
1 TTTTAGCGGCGTTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
** *
49328414 TTTTAGCGGCGTTTTTGGTAAAA-CGCCGCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTTGCCAAAAGCGCCGCTAATGCTCTG-GT
49328456 TTTT
1 TTTT
49328460 CAATTTTTGC
Statistics
Matches: 150, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
40 30 0.20
41 110 0.73
42 10 0.07
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (42 bp):
TTTTAGCGGCGTTTTTGCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:49328498 original size:12 final size:12
Alignment explanation
Indices: 49328483--49328509 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
49328473 GTTTTTTGAT
49328483 AAAACGCCGCTA
1 AAAACGCCGCTA
49328495 AAAACGCCGCTA
1 AAAACGCCGCTA
49328507 AAA
1 AAA
49328510 CCCTATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:49336590 original size:23 final size:23
Alignment explanation
Indices: 49336564--49336617 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
49336554 TCCATTTTAA
49336564 CCTAACCCTTCTCTTTTAAAAAC
1 CCTAACCCTTCTCTTTTAAAAAC
49336587 CCTAACCCTTCTCTTTTAAAAAC
1 CCTAACCCTTCTCTTTTAAAAAC
*
49336610 CCCAACCC
1 CCTAACCC
49336618 CTCTTCCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.30, C:0.41, G:0.00, T:0.30
Consensus pattern (23 bp):
CCTAACCCTTCTCTTTTAAAAAC
Found at i:49339840 original size:32 final size:34
Alignment explanation
Indices: 49339804--49339871 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
49339794 TTAAAAAATT
* *
49339804 AATTTAATTAT-ATATATA-AAAAAATTTATATA
1 AATTTAATTATAAAATATATAAAAAATTAATATA
*
49339836 AATTTAATTATAAAATATATAAAATATTAATATA
1 AATTTAATTATAAAATATATAAAAAATTAATATA
49339870 AA
1 AA
49339872 ATAATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 11 0.35
33 6 0.19
34 14 0.45
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (34 bp):
AATTTAATTATAAAATATATAAAAAATTAATATA
Found at i:49339869 original size:22 final size:23
Alignment explanation
Indices: 49339824--49339874 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
49339814 TATATATAAA
*
49339824 AAAATTTATATAAATTTAATTAT
1 AAAATATATATAAATTTAATTAT
49339847 AAAATATATA-AAATATTAA-TAT
1 AAAATATATATAAAT-TTAATTAT
49339869 AAAATA
1 AAAATA
49339875 ATTTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
AAAATATATATAAATTTAATTAT
Found at i:49340878 original size:7 final size:7
Alignment explanation
Indices: 49340866--49340909 Score: 79
Period size: 7 Copynumber: 6.1 Consensus size: 7
49340856 TTTAATATAT
49340866 AAATTTA
1 AAATTTA
49340873 AAATTTA
1 AAATTTA
49340880 AAATTTA
1 AAATTTA
49340887 AAATTTA
1 AAATTTA
49340894 AAATTTA
1 AAATTTA
49340901 AAATATTA
1 AAAT-TTA
49340909 A
1 A
49340910 TATAAATTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 32 0.89
8 4 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATTTA
Found at i:49341182 original size:28 final size:28
Alignment explanation
Indices: 49341151--49341218 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
49341141 AATAAAACCT
49341151 TTTTTTATAAAATTACAAAAATAGGCCA
1 TTTTTTATAAAATTACAAAAATAGGCCA
** *
49341179 TTTTTTGA-AAAATTATGAGAATAGGCCA
1 TTTTTT-ATAAAATTACAAAAATAGGCCA
* *
49341207 ATTTTGATAAAA
1 TTTTTTATAAAA
49341219 CGCTTCTAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
27 1 0.03
28 31 0.94
29 1 0.03
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (28 bp):
TTTTTTATAAAATTACAAAAATAGGCCA
Found at i:49341661 original size:20 final size:20
Alignment explanation
Indices: 49341620--49341661 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
49341610 TTAGAAAATT
*
49341620 TTTATATGTTGATAGTTGTG
1 TTTATATGTTGATAATTGTG
*
49341640 TTTATATTTTGCATAATT-TG
1 TTTATATGTTG-ATAATTGTG
49341660 TT
1 TT
49341662 ATTATGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.21, C:0.02, G:0.17, T:0.60
Consensus pattern (20 bp):
TTTATATGTTGATAATTGTG
Found at i:49341781 original size:26 final size:26
Alignment explanation
Indices: 49341752--49341810 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
49341742 TAATATTATT
*
49341752 TTTTTATTTATTTAGAGTATTATAAA
1 TTTTTATTTATTCAGAGTATTATAAA
49341778 TTTTTATTTATTCAGAGTATTATAAA
1 TTTTTATTTATTCAGAGTATTATAAA
49341804 TTTTTAT
1 TTTTTAT
49341811 ATAAACTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (26 bp):
TTTTTATTTATTCAGAGTATTATAAA
Found at i:49359783 original size:21 final size:20
Alignment explanation
Indices: 49359744--49359783 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
49359734 GTTTATACAC
*
49359744 ATTAAATTTTTTAGATTTAT
1 ATTAAATTTTTAAGATTTAT
*
49359764 ATTAAATGTTTTAAGGTTTA
1 ATTAAAT-TTTTAAGATTTA
49359784 AAATAGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (20 bp):
ATTAAATTTTTAAGATTTAT
Found at i:49362031 original size:40 final size:40
Alignment explanation
Indices: 49361987--49362111 Score: 137
Period size: 40 Copynumber: 3.1 Consensus size: 40
49361977 GCGTTTGGAT
* *
49361987 AAAAACGCTGCTATAGATCAAGCATTAGCGGTGCTTATTG
1 AAAAACGCTGCTATAGATCGAGCATTAGCGGTGCTTTTTG
* * * *
49362027 AAAAATGCCGCTATAGATCGAGCATTGATAC--TGCTTTTTA
1 AAAAACGCTGCTATAGATCGAGCATT-A-GCGGTGCTTTTTG
* * *
49362067 AAAAACGCTGCTATAGATCGAGTATTTGCGGCGCTTTTTG
1 AAAAACGCTGCTATAGATCGAGCATTAGCGGTGCTTTTTG
49362107 AAAAA
1 AAAAA
49362112 TGCCGCAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 65 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (40 bp):
AAAAACGCTGCTATAGATCGAGCATTAGCGGTGCTTTTTG
Found at i:49362259 original size:15 final size:14
Alignment explanation
Indices: 49362230--49362271 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
49362220 CCATTTTATT
49362230 TTCCCCAAATCCCC
1 TTCCCCAAATCCCC
*
49362244 TTCCCCGAAATTCCC
1 TTCCCC-AAATCCCC
*
49362259 TTCCCCATATCCC
1 TTCCCCAAATCCC
49362272 TAAAGCAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.19, C:0.52, G:0.02, T:0.26
Consensus pattern (14 bp):
TTCCCCAAATCCCC
Found at i:49362387 original size:15 final size:15
Alignment explanation
Indices: 49362364--49362399 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
49362354 CAGATGAAAT
* *
49362364 TTTAAATTTTTATAG
1 TTTATATTTTTATAA
49362379 TTTATATTTTTATAA
1 TTTATATTTTTATAA
49362394 TTTATA
1 TTTATA
49362400 AAGGATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (15 bp):
TTTATATTTTTATAA
Found at i:49365147 original size:35 final size:35
Alignment explanation
Indices: 49365079--49365144 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
49365069 TAATTGTGTT
49365079 ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
* *
49365114 ATTAATTT-TTATATTT-AGTTTTAAATTTAAA
1 ATTAATTTATTAT-TTTAAATTCTAAATTTAAA
49365145 ATTTTAATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
Found at i:49365386 original size:85 final size:85
Alignment explanation
Indices: 49365234--49365555 Score: 353
Period size: 85 Copynumber: 3.8 Consensus size: 85
49365224 ATATATTTTT
* * ** * * *
49365234 TAAAGGTCATGTTCTTTAGCGGTGTTTGTGAGAAAAAG-TGCTGTTAAAGGTC-TATTCTATAGT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTG-GAAAAAGCAAC-GCTAAAGGTCATGTTCTATAGC
*
49365297 GGCGTTTGTGGCAAAAGCGCCTC
64 GGCGTTTGTGG-AAAAGCGCCAC
* * * ** *
49365320 GAAAGGT-TTGTTCTATAGCGGCGTTTGTGGGAAAAGCATTGCTAAAGGTCATGTTCTTTAGCGG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCAACGCTAAAGGTCATGTTCTATAGCGG
* * *
49365384 CGTTTGTGGTAAAGTGCCGC
66 CGTTTGTGGAAAAGCGCCAC
* * * * *
49365404 TAAAGGTCATGTTCTAAAGCGGCTTTTGTGGAAAAAGTAACGCTAAAGGTTATGTTCTTTAGCGG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCAACGCTAAAGGTCATGTTCTATAGCGG
49365469 CGTTTGTGGAAAAAGCGCCAC
66 CGTTTGTGG-AAAAGCGCCAC
* * **
49365490 TAAAGGTCATGTTTTATAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGTTCTATAGCGG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCAACGCTAAAGGTCATGTTCTATAGCGG
49365555 C
66 C
49365556 CTTTTTTTAC
Statistics
Matches: 196, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
84 29 0.15
85 96 0.49
86 71 0.36
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (85 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCAACGCTAAAGGTCATGTTCTATAGCGG
CGTTTGTGGAAAAGCGCCAC
Found at i:49365389 original size:43 final size:43
Alignment explanation
Indices: 49365234--49365555 Score: 362
Period size: 43 Copynumber: 7.5 Consensus size: 43
49365224 ATATATTTTT
* * * * *
49365234 TAAAGGTCATGTTCTTTAGCGGTGTTTGTGAGAAAAAGTGCTGT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTG-GAAAAAGCGCCGC
* * * *
49365278 TAAAGGTC-TATTCTATAGTGGCGTTTGTGGCAAAAGCGCCTC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* * * ***
49365320 GAAAGGT-TTGTTCTATAGCGGCGTTTGTGGGAAAAGCATTGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* * *
49365362 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGG-TAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* * ***
49365404 TAAAGGTCATGTTCTAAAGCGGCTTTTGTGGAAAAAGTAACGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* * *
49365447 TAAAGGTTATGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
* *
49365490 TAAAGGTCATGTTTTATAGCGGCGTTTGTGAAAAAAGCGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
49365533 TAAAGGTCATGTTCTATAGCGGC
1 TAAAGGTCATGTTCTATAGCGGC
49365556 CTTTTTTTAC
Statistics
Matches: 230, Mismatches: 45, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
42 81 0.35
43 141 0.61
44 8 0.03
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGCGCCGC
Found at i:49365467 original size:128 final size:128
Alignment explanation
Indices: 49365234--49365560 Score: 399
Period size: 128 Copynumber: 2.5 Consensus size: 128
49365224 ATATATTTTT
* * * * *
49365234 TAAAGGTCATGTTCTTTAGCGGTGTTTGTGAGAAAAAGTGCTGTTAAAGGTC-TATTCTATAGTG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAG-AAAAGTGCCGCTAAAGGTCATGTTCTATAGCG
* * ** * * ***
49365298 GCGTTTGTGGCAAAAGCGCCTCGAAAGGTTTGTTCTATAGCGGCGTTTGTGGGAAAAGCATTGC
65 GCTTTTGTGGAAAAAGCAACGCGAAAGGTTTGTTCTATAGCGGCGTTTGTGGAAAAAGCACCAC
* *
49365362 TAAAGGTCATGTTCTTTAGCGGCGTTTGTG-GTAAAGTGCCGCTAAAGGTCATGTTCTAAAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGG
* * * *
49365426 CTTTTGTGGAAAAAGTAACGCTAAAGGTTATGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCAC
66 CTTTTGTGGAAAAAGCAACGCGAAAGGTT-TGTTCTATAGCGGCGTTTGTGGAAAAAGCACCAC
* *
49365490 TAAAGGTCATGTT-TTATAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGTTCTATAGCG
1 TAAAGGTCATGTTCTT-TAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGTTCTATAGCG
49365554 GCCTTTT
65 G-CTTTT
49365561 TTTACATAAA
Statistics
Matches: 170, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
126 16 0.09
127 35 0.21
128 84 0.49
129 30 0.18
130 5 0.03
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (128 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATGTTCTATAGCGG
CTTTTGTGGAAAAAGCAACGCGAAAGGTTTGTTCTATAGCGGCGTTTGTGGAAAAAGCACCAC
Found at i:49389000 original size:49 final size:49
Alignment explanation
Indices: 49388928--49389027 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
49388918 ACAATGCCGG
*
49388928 AAAGACTGAGTTAAATGTTTCACGCTCAGCTGTTTCAGTTAAAAATTTA
1 AAAGACTAAGTTAAATGTTTCACGCTCAGCTGTTTCAGTTAAAAATTTA
49388977 AAAGACTAAGTTAAATGTTTCACGCTCAGCTGTTTCAGTTAAAAATTTA
1 AAAGACTAAGTTAAATGTTTCACGCTCAGCTGTTTCAGTTAAAAATTTA
49389026 AA
1 AA
49389028 CTTGTACCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (49 bp):
AAAGACTAAGTTAAATGTTTCACGCTCAGCTGTTTCAGTTAAAAATTTA
Found at i:49390794 original size:43 final size:43
Alignment explanation
Indices: 49390733--49390888 Score: 183
Period size: 43 Copynumber: 3.6 Consensus size: 43
49390723 TACCGTGATG
* * *
49390733 TGATTGCATGTAAGACCATGTTTGGGATATTGGCATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
49390776 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCAT-TA-TA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTATTA
* * *
49390819 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-ATATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TA
* * *
49390862 TGATAACATGTAAGACAATATCTGGGA
1 TGATTACATGTAAGACCATGTCTGGGA
49390889 TATAGCATTG
Statistics
Matches: 97, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
43 93 0.96
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
Found at i:49395792 original size:21 final size:21
Alignment explanation
Indices: 49395768--49395808 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49395758 TGGAAATAGG
*
49395768 AATGATCTCAATGAAAATCCA
1 AATGATCACAATGAAAATCCA
*
49395789 AATGATCACAATGAGAATCC
1 AATGATCACAATGAAAATCC
49395809 TTACATGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.20, G:0.12, T:0.22
Consensus pattern (21 bp):
AATGATCACAATGAAAATCCA
Found at i:49396505 original size:11 final size:11
Alignment explanation
Indices: 49396479--49396516 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
49396469 GAACATGTTG
49396479 AATTTTA-ATT
1 AATTTTATATT
*
49396489 AATTTTATATC
1 AATTTTATATT
*
49396500 AATTTTTTATT
1 AATTTTATATT
49396511 AATTTT
1 AATTTT
49396517 GATTATTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
AATTTTATATT
Found at i:49400422 original size:43 final size:43
Alignment explanation
Indices: 49400375--49400491 Score: 137
Period size: 42 Copynumber: 2.7 Consensus size: 43
49400365 TCCTAGATGT
* *
49400375 GGTCTTACATGTAATCAAATATCGATGCCACTATCCTAGACAG
1 GGTCTTACACGTAATCAAATATCGATGCCAATATCCTAGACAG
* * * **
49400418 GGTCTTACACGAAATCATATA-CGATGCCAATGTCCTAGACCT
1 GGTCTTACACGTAATCAAATATCGATGCCAATATCCTAGACAG
* *
49400460 GGTCTTACACGTAAAACAAAAATCGATGCCAA
1 GGTCTTACACGT-AATCAAATATCGATGCCAA
49400492 CGTCCCAAAC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.46
43 24 0.39
44 9 0.15
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATATCGATGCCAATATCCTAGACAG
Found at i:49400456 original size:42 final size:43
Alignment explanation
Indices: 49400356--49400513 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
49400346 AGCTCATGCA
* * * *
49400356 ATGCCAACGTCCTAGA-TGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCTAGACAG-GGTCTTACACGAAATCAAATATCG
* * *
49400399 ATGCCACTATCCTAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCTAGACAGGGTCTTACACGAAATCAAATATCG
** * *
49400441 ATGCCAATGTCCTAGACCTGGTCTTACACGTAAAACAAAAATCG
1 ATGCCAATGTCCTAGACAGGGTCTTACACG-AAATCAAATATCG
* * *
49400485 ATGCCAACGTCCCAAAC-GTGGTCTTACAC
1 ATGCCAATGTCCTAGACAG-GGTCTTACAC
49400514 AATAACACAT
Statistics
Matches: 93, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.30
43 38 0.41
44 27 0.29
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:49405154 original size:29 final size:29
Alignment explanation
Indices: 49405120--49405222 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
49405110 TAATCAGCCG
** *
49405120 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
49405149 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
49405178 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
49405207 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
49405223 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:49413232 original size:29 final size:29
Alignment explanation
Indices: 49413198--49413300 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
49413188 TAATCAGCCG
** *
49413198 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
49413227 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
49413256 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
49413285 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
49413301 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:49415956 original size:60 final size:60
Alignment explanation
Indices: 49415863--49416031 Score: 259
Period size: 60 Copynumber: 2.8 Consensus size: 60
49415853 GTGGACCTAC
**
49415863 TGATGGCTTTGTGCAGCTATTGATGGCTTTGTGCCGCTATTGATGGCTTTATGCGGCTAT
1 TGATGGCTTTGTGCAGCTATTGATGGCTTTGTGCCGCTATTGATGGCTTTATGCCACTAT
* * *
49415923 TGATGGCTTTGTGCTGCTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCAGCTATTGATGGCTTTGTGCCGCTATTGATGGCTTTATGCCACTAT
* *
49415983 TGACGGCTTTGTGCCA-CTATTGATGGCTTTGTACCGCTATTGATGGCTT
1 TGATGGCTTTGTG-CAGCTATTGATGGCTTTGTGCCGCTATTGATGGCTT
49416032 CGTGCCTCTA
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
60 98 0.99
61 1 0.01
ACGTcount: A:0.13, C:0.19, G:0.28, T:0.40
Consensus pattern (60 bp):
TGATGGCTTTGTGCAGCTATTGATGGCTTTGTGCCGCTATTGATGGCTTTATGCCACTAT
Found at i:49416048 original size:20 final size:20
Alignment explanation
Indices: 49415863--49416058 Score: 232
Period size: 20 Copynumber: 9.8 Consensus size: 20
49415853 GTGGACCTAC
49415863 TGATGGCTTTGTG-CAGCTAT
1 TGATGGCTTTGTGCCA-CTAT
*
49415883 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
* **
49415903 TGATGGCTTTATGCGGCTAT
1 TGATGGCTTTGTGCCACTAT
** *
49415923 TGATGGCTTTGTGCTGCTAC
1 TGATGGCTTTGTGCCACTAT
*
49415943 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
49415963 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
*
49415983 TGACGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* *
49416003 TGATGGCTTTGTACCGCTAT
1 TGATGGCTTTGTGCCACTAT
* * *
49416023 TGATGGCTTCGTGCCTCTAC
1 TGATGGCTTTGTGCCACTAT
* *
49416043 TCATGGGTTTGTGCCA
1 TGATGGCTTTGTGCCA
49416059 TATACTGATA
Statistics
Matches: 154, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
20 153 0.99
21 1 0.01
ACGTcount: A:0.13, C:0.20, G:0.28, T:0.39
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:49416054 original size:60 final size:60
Alignment explanation
Indices: 49415859--49416058 Score: 258
Period size: 60 Copynumber: 3.3 Consensus size: 60
49415849 GATTGTGGAC
* **
49415859 CTACTGATGGCTTTGTG-CAGCTATTGATGGCTTTGTGCCGCTATTGATGGCTTTATGCGG
1 CTACTGATGGCTTTGTGCCA-CTATTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
* ** *
49415919 CTATTGATGGCTTTGTGCTGCTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
1 CTACTGATGGCTTTGTGCCACTATTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
* * * * *
49415979 CTATTGACGGCTTTGTGCCACTATTGATGGCTTTGTACCGCTATTGATGGCTTCGTGCCT
1 CTACTGATGGCTTTGTGCCACTATTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
* *
49416039 CTACTCATGGGTTTGTGCCA
1 CTACTGATGGCTTTGTGCCA
49416059 TATACTGATA
Statistics
Matches: 121, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
60 121 1.00
ACGTcount: A:0.13, C:0.21, G:0.28, T:0.39
Consensus pattern (60 bp):
CTACTGATGGCTTTGTGCCACTATTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
Found at i:49416122 original size:26 final size:26
Alignment explanation
Indices: 49416060--49416141 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 26
49416050 TTTGTGCCAT
* *
49416060 ATACTGATACTGGCAACTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* *
49416086 TTACTGTTACTGGCAGCTTTGCTACG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* *
49416112 ATATTAG-TACTGGCAGCTATGCTGCG
1 ATACT-GTTACTGGCAGCTTTGCTGCG
49416138 ATAC
1 ATAC
49416142 CGGTGTGTTG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:49418651 original size:24 final size:24
Alignment explanation
Indices: 49418619--49418666 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
49418609 ATTGTCATAC
49418619 GATAAGAATTCTTTCTGAAACTAA
1 GATAAGAATTCTTTCTGAAACTAA
49418643 GATAAGAATTCTTTCTGAAACTAA
1 GATAAGAATTCTTTCTGAAACTAA
49418667 ATGGTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (24 bp):
GATAAGAATTCTTTCTGAAACTAA
Found at i:49424616 original size:43 final size:43
Alignment explanation
Indices: 49424550--49424695 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
49424540 AGCTCGTACA
* * *
49424550 ATGCCAACATCGCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATATCCCAGACAG-GGTCTTACACGTAATCAAATATTG
* * * *
49424593 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATATCCCAGACAGGGTCTTACACGTAATCAAATATTG
* **
49424635 ATGCCAATGTCCCAGACTTGGTCTTACACGTCAATCACAA-ATTG
1 ATGCCAATATCCCAGACAGGGTCTTACACGT-AATCA-AATATTG
**
49424679 ATGCCAACGTCCCAGAC
1 ATGCCAATATCCCAGAC
49424696 TACAATAATA
Statistics
Matches: 84, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
42 27 0.32
43 38 0.45
44 19 0.23
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATATCCCAGACAGGGTCTTACACGTAATCAAATATTG
Found at i:49431254 original size:49 final size:50
Alignment explanation
Indices: 49431176--49431416 Score: 297
Period size: 49 Copynumber: 4.8 Consensus size: 50
49431166 GTAGCTGAAG
* * *
49431176 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGAGCCAA
* * * *
49431225 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAGCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGAGCCAA
* * * * *
49431275 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGAGCCAA
* * * * *
49431325 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGAGCCAA
*
49431375 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
49431417 TGACCTCACA
Statistics
Matches: 162, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 75 0.46
50 50 0.31
51 37 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGAGCCAA
Found at i:49431413 original size:100 final size:99
Alignment explanation
Indices: 49431178--49431421 Score: 346
Period size: 100 Copynumber: 2.5 Consensus size: 99
49431168 AGCTGAAGCT
* * * * * *
49431178 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
* * *
49431243 AGCCTGCACTTAGTACTACACACGTGAGCTAACC
66 AGCCTGCACTTAGTACTACACACGCGAGCCAACA
* * *
49431277 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATA
*
49431342 GTAGCCTGCACTTAGTACTACACATGCGA-CCAACA
64 GTAGCCTGCACTTAGTACTACACACGCGAGCCAACA
49431377 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
49431422 TCACAATAGC
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 39 0.30
100 49 0.38
101 40 0.31
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGT
AGCCTGCACTTAGTACTACACACGCGAGCCAACA
Found at i:49433518 original size:38 final size:39
Alignment explanation
Indices: 49433439--49433580 Score: 225
Period size: 38 Copynumber: 3.7 Consensus size: 39
49433429 GTGCGAATTG
49433439 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
49433478 TGATATCTGGGCTAAGCCCGAAGGCAA-TGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
49433516 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
49433554 TGATATCCGGGTTAAGTCCCGAAGGCA
1 TGATATCCGGGCTAAG-CCCGAAGGCA
49433581 TTTGAGCGGG
Statistics
Matches: 95, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
37 10 0.11
38 50 0.53
39 26 0.27
40 9 0.09
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:49435189 original size:225 final size:225
Alignment explanation
Indices: 49434798--49435247 Score: 846
Period size: 225 Copynumber: 2.0 Consensus size: 225
49434788 AAATTCTAGA
* *
49434798 AATAAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCTGAG
1 AATAAATCCATGAATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
*
49434863 TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
66 TTGTGAAACTCGAGATATGCTTTTTAAGGAGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
* *
49434928 TCAAATTGGTCTGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTAACGG
131 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGATAACGG
49434993 TCTCGGGTTCGGGGTGTTACAATTTTATTG
196 TCTCGGGTTCGGGGTGTTACAATTTTATTG
49435023 AATAAATCCATGAATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
1 AATAAATCCATGAATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
49435088 TTGTGAAACTCGAGATATGCTTTTTAAGGAGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
66 TTGTGAAACTCGAGATATGCTTTTTAAGGAGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
49435153 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGATAACGG
131 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGATAACGG
*
49435218 TCTTGGGTTCGGGGTGTTACAATTTTATTG
196 TCTCGGGTTCGGGGTGTTACAATTTTATTG
49435248 GTATCAGAGC
Statistics
Matches: 219, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
225 219 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (225 bp):
AATAAATCCATGAATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
TTGTGAAACTCGAGATATGCTTTTTAAGGAGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGATAACGG
TCTCGGGTTCGGGGTGTTACAATTTTATTG
Found at i:49441786 original size:224 final size:224
Alignment explanation
Indices: 49441396--49442068 Score: 1283
Period size: 224 Copynumber: 3.0 Consensus size: 224
49441386 AAATTCTAGA
*
49441396 AATAAATACATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
1 AATAAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
* *
49441461 TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAACAATGCAGTTTTCCAGCTTGCCTGGGAATG
66 TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
*
49441526 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTAACGT
131 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTAACGG
49441591 TCTCGGGTTCGGGTGTTACAATTTTATTG
196 TCTCGGGTTCGGGTGTTACAATTTTATTG
*
49441620 AATAAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACAGAATCAGTTTCCGAG
1 AATAAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
49441685 TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
66 TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
49441750 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTAACGG
131 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTAACGG
49441815 TCTCGGGTTCGGGTGTTACAATTTTATTG
196 TCTCGGGTTCGGGTGTTACAATTTTATTG
49441844 AATAAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
1 AATAAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
49441909 TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
66 TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
*
49441974 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCTGACACCGGTAACGG
131 TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTAACGG
49442039 TCTCGGGTTCGGGGTGTTACAATTTTATTG
196 TCTCGGGTTC-GGGTGTTACAATTTTATTG
49442069 GTATCAGAGC
Statistics
Matches: 441, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
224 422 0.96
225 19 0.04
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (224 bp):
AATAAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAAATTTACGGAATCAGTTTCCGAG
TTGTGAAACTCGAGATATGCTTTTTAAGGCGACAGCGATGCAGTTTTCCAGCTTGCCTGGGAATG
TCAAATTGGTCGGTGCCATAAGTGGTTTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTAACGG
TCTCGGGTTCGGGTGTTACAATTTTATTG
Found at i:49449177 original size:28 final size:28
Alignment explanation
Indices: 49449116--49449213 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
49449106 TCACAAATTG
** * *
49449116 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
49449145 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
49449173 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
49449201 GCACTAAGTGTGC
1 GCACTAAGTGTGC
49449214 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:49456842 original size:28 final size:28
Alignment explanation
Indices: 49456781--49456878 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
49456771 TCACAAATTG
** * *
49456781 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
49456810 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
49456838 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
49456866 GCACTAAGTGTGC
1 GCACTAAGTGTGC
49456879 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Done.