Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Chr14

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31

Warning! 4503000 characters in sequence are not A, C, G, or T


File 171 of 770

Found at i:50930312 original size:93 final size:93

Alignment explanation

Indices: 50930153--50930325 Score: 301 Period size: 93 Copynumber: 1.9 Consensus size: 93 50930143 GGGATATTTG * * 50930153 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 50930218 TTGAGTCCGAGTTCGTGAGATGTAACTA 66 TTGAGTCCGAGTTCGTGAGATGTAACTA * * 50930246 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG * 50930311 TTGAGTTCGAGTTCG 66 TTGAGTCCGAGTTCG 50930326 CTTATGGGCA Statistics Matches: 75, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGTGAGATGTAACTA Found at i:50933409 original size:40 final size:40 Alignment explanation

Indices: 50933332--50933589 Score: 396 Period size: 40 Copynumber: 6.5 Consensus size: 40 50933322 AAACCAAGTA * * 50933332 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG 1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG * * 50933371 CCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 50933411 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 50933451 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * 50933491 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG * * * * 50933531 CCTTCGGGGCTTAGCCTGGA-ATTAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG 50933571 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 50933590 TTATCATCCG Statistics Matches: 202, Mismatches: 14, Indels: 5 0.91 0.06 0.02 Matches are distributed among these distances: 39 14 0.07 40 188 0.93 ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG Found at i:50935786 original size:17 final size:19 Alignment explanation

Indices: 50935757--50935792 Score: 58 Period size: 18 Copynumber: 2.0 Consensus size: 19 50935747 TTAGCATTCT 50935757 TACCAAGAGTTCAT-CTCA 1 TACCAAGAGTTCATACTCA 50935775 TACCAA-AGTTCATACTCA 1 TACCAAGAGTTCATACTCA 50935793 CGAGTTTTAC Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 17 7 0.41 18 10 0.59 ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28 Consensus pattern (19 bp): TACCAAGAGTTCATACTCA Found at i:50938706 original size:20 final size:20 Alignment explanation

Indices: 50938681--50938726 Score: 58 Period size: 20 Copynumber: 2.4 Consensus size: 20 50938671 TCCATGCACT * * 50938681 CATAAAATCATACTATAACA 1 CATAAAATAATACTAAAACA * 50938701 CATAAAATAATATTAAAACA 1 CATAAAATAATACTAAAACA 50938721 -ATAAAA 1 CATAAAA 50938727 AGAATTTCTC Statistics Matches: 23, Mismatches: 3, Indels: 1 0.85 0.11 0.04 Matches are distributed among these distances: 19 6 0.26 20 17 0.74 ACGTcount: A:0.63, C:0.13, G:0.00, T:0.24 Consensus pattern (20 bp): CATAAAATAATACTAAAACA Found at i:50940854 original size:65 final size:65 Alignment explanation

Indices: 50940775--50940904 Score: 260 Period size: 65 Copynumber: 2.0 Consensus size: 65 50940765 TGGATGTGTA 50940775 TGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTAAGTCCCGAAGGCGAATAT 1 TGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTAAGTCCCGAAGGCGAATAT 50940840 TGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTAAGTCCCGAAGGCGAATAT 1 TGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTAAGTCCCGAAGGCGAATAT 50940905 GCTAATGATT Statistics Matches: 65, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 65 65 1.00 ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34 Consensus pattern (65 bp): TGATTATTGATTATGTGTGTATGAGTATTTGAATTCCACCCGGGCTAAGTCCCGAAGGCGAATAT Found at i:50941101 original size:40 final size:40 Alignment explanation

Indices: 50940999--50941148 Score: 169 Period size: 40 Copynumber: 3.8 Consensus size: 40 50940989 AAATTGAATG * * * * * 50940999 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT * * 50941039 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT * * 50941079 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT * * 50941119 AAATCCGGGCTAAGACCCGAAGGCATTTGT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGT 50941149 CCAAATCGTG Statistics Matches: 94, Mismatches: 13, Indels: 6 0.83 0.12 0.05 Matches are distributed among these distances: 39 3 0.03 40 88 0.94 41 3 0.03 ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT Found at i:50941165 original size:40 final size:38 Alignment explanation

Indices: 50940995--50941182 Score: 155 Period size: 40 Copynumber: 4.8 Consensus size: 38 50940985 TGAGAAATTG * * * 50940995 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA 1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA * * * 50941035 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT 1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA * * 50941072 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA 1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA * * * 50941112 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTCCA 1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA * * * 50941152 AATCGTGATATCCGGGTTAAGTCCCGTAGGC 1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC 50941183 CTTGGTGCGG Statistics Matches: 120, Mismatches: 21, Indels: 14 0.77 0.14 0.09 Matches are distributed among these distances: 37 4 0.03 38 2 0.02 39 4 0.03 40 109 0.91 41 1 0.01 ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23 Consensus pattern (38 bp): AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA Found at i:50953153 original size:25 final size:24 Alignment explanation

Indices: 50953120--50953173 Score: 65 Period size: 25 Copynumber: 2.2 Consensus size: 24 50953110 AATAAAAATT * 50953120 ATTAATAATTCAAT-GAATTAAAAA 1 ATTAATAATTCAATAAAATT-AAAA * 50953144 ATTAATTAATTGAATAAAATTAAAA 1 ATTAA-TAATTCAATAAAATTAAAA 50953169 ATTAA 1 ATTAA 50953174 GAGAAAACTA Statistics Matches: 26, Mismatches: 2, Indels: 3 0.84 0.06 0.10 Matches are distributed among these distances: 24 5 0.19 25 17 0.65 26 4 0.15 ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35 Consensus pattern (24 bp): ATTAATAATTCAATAAAATTAAAA Found at i:50953873 original size:22 final size:21 Alignment explanation

Indices: 50953844--50953887 Score: 54 Period size: 22 Copynumber: 2.0 Consensus size: 21 50953834 TGCTAAGTTG 50953844 ATAAAGAT-TAATATATAAATT 1 ATAAAGATATAAT-TATAAATT * 50953865 ATAATAGATATAATTATAGATT 1 ATAA-AGATATAATTATAAATT 50953887 A 1 A 50953888 GAGATTATCA Statistics Matches: 20, Mismatches: 1, Indels: 3 0.83 0.04 0.12 Matches are distributed among these distances: 21 4 0.20 22 12 0.60 23 4 0.20 ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39 Consensus pattern (21 bp): ATAAAGATATAATTATAAATT Found at i:50954245 original size:41 final size:41 Alignment explanation

Indices: 50954198--50954287 Score: 171 Period size: 41 Copynumber: 2.2 Consensus size: 41 50954188 AAATCAAAGA 50954198 TTAAAATCTCTACTTAGAGAATAATTTTTAGGAAAATTATG 1 TTAAAATCTCTACTTAGAGAATAATTTTTAGGAAAATTATG * 50954239 TTAAAATCTCTATTTAGAGAATAATTTTTAGGAAAATTATG 1 TTAAAATCTCTACTTAGAGAATAATTTTTAGGAAAATTATG 50954280 TTAAAATC 1 TTAAAATC 50954288 AATTCTCAGG Statistics Matches: 48, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 41 48 1.00 ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40 Consensus pattern (41 bp): TTAAAATCTCTACTTAGAGAATAATTTTTAGGAAAATTATG Found at i:50956147 original size:40 final size:40 Alignment explanation

Indices: 50956102--50956282 Score: 265 Period size: 40 Copynumber: 4.5 Consensus size: 40 50956092 CAAGCGCAAT * * 50956102 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGTACAAA 1 TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAA * * 50956142 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA 1 TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAA 50956182 TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAA 1 TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAA * * * 50956222 TGCCTTCGGGTCTTAACCCGGATATAATC-ACTAGCATAAA 1 TGCCTTCGGGTCTTAACCCGGATAT-AGCAACTCGCACAAA * * 50956262 TGCCTTCGGGGCTTAGCCCGG 1 TGCCTTCGGGTCTTAACCCGG 50956283 GTATCATTCA Statistics Matches: 129, Mismatches: 11, Indels: 2 0.91 0.08 0.01 Matches are distributed among these distances: 40 127 0.98 41 2 0.02 ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24 Consensus pattern (40 bp): TGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAA Found at i:50956198 original size:80 final size:79 Alignment explanation

Indices: 50956075--50956286 Score: 300 Period size: 80 Copynumber: 2.7 Consensus size: 79 50956065 TCTTCGGAAT * * * * 50956075 TTAG-CCGGATATAACCACAAGCGCAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGTAC 1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC 50956139 AAATGCCTTCGGGTC 65 AAATGCCTTCGGGTC * * 50956154 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC 1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC 50956219 AAATGCCTTCGGGTC 65 AAATGCCTTCGGGTC * * * * 50956234 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT 1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT 50956287 CATTCAATTG Statistics Matches: 118, Mismatches: 12, Indels: 5 0.87 0.09 0.04 Matches are distributed among these distances: 79 5 0.04 80 112 0.95 81 1 0.01 ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24 Consensus pattern (79 bp): TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA AATGCCTTCGGGTC Found at i:50972299 original size:46 final size:45 Alignment explanation

Indices: 50972249--50972421 Score: 163 Period size: 46 Copynumber: 3.8 Consensus size: 45 50972239 TGGTTGAGCA 50972249 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG * * * * * * 50972295 TCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--AATGTAACTAGG 1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G * * * 50972340 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG 1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG * * 50972388 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA 1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTA 50972422 GGGGCGGGTT Statistics Matches: 101, Mismatches: 17, Indels: 18 0.74 0.12 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 45 3 0.03 46 57 0.56 47 27 0.27 48 3 0.03 50 3 0.03 51 2 0.02 ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29 Consensus pattern (45 bp): TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG Found at i:50972405 original size:93 final size:93 Alignment explanation

Indices: 50972246--50972416 Score: 270 Period size: 93 Copynumber: 1.8 Consensus size: 93 50972236 GGATGGTTGA * * * * 50972246 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT 50972311 TGAGCCCGAGTTCGTGAAATGTAACTAG 66 TGAGCCCGAGTTCGTGAAATGTAACTAG * * * 50972339 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT 1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT * 50972404 TGAGTCCGAGTTC 66 TGAGCCCGAGTTC 50972417 ACTTAGGGGC Statistics Matches: 70, Mismatches: 8, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 93 70 1.00 ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28 Consensus pattern (93 bp): GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT TGAGCCCGAGTTCGTGAAATGTAACTAG Found at i:50979795 original size:46 final size:45 Alignment explanation

Indices: 50979745--50979916 Score: 215 Period size: 46 Copynumber: 3.8 Consensus size: 45 50979735 TGGTTGAGCA 50979745 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G * * * * 50979791 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA- 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG 50979837 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G * * 50979883 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA 50979917 GGGGCGGGTT Statistics Matches: 108, Mismatches: 10, Indels: 16 0.81 0.07 0.12 Matches are distributed among these distances: 43 1 0.01 44 3 0.03 45 2 0.02 46 96 0.89 47 2 0.02 48 3 0.03 49 1 0.01 ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29 Consensus pattern (45 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG Found at i:50979899 original size:92 final size:92 Alignment explanation

Indices: 50979742--50979911 Score: 313 Period size: 92 Copynumber: 1.8 Consensus size: 92 50979732 GGATGGTTGA * * 50979742 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 50979807 TGAGTCCGAGTTCGTGAATGTAACTAG 66 TGAGTCCGAGTTCGTGAATGTAACTAG * 50979834 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 50979899 TGAGTCCGAGTTC 66 TGAGTCCGAGTTC 50979912 ACTTAGGGGC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 92 75 1.00 ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28 Consensus pattern (92 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAATGTAACTAG Found at i:50987597 original size:40 final size:40 Alignment explanation

Indices: 50987552--50987718 Score: 158 Period size: 40 Copynumber: 4.2 Consensus size: 40 50987542 CGGAATATAA 50987552 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC * *** * * 50987592 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC * * * * 50987632 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC *** * * * * 50987672 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC 1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC 50987711 CCGGATAT 1 CCGGATAT 50987719 CATTCAATTT Statistics Matches: 102, Mismatches: 24, Indels: 3 0.79 0.19 0.02 Matches are distributed among these distances: 39 14 0.14 40 88 0.86 ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26 Consensus pattern (40 bp): CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:50987702 original size:80 final size:79 Alignment explanation

Indices: 50987568--50987716 Score: 203 Period size: 80 Copynumber: 1.9 Consensus size: 79 50987558 ATAACCACGT * 50987568 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC 50987633 CGGATGTAGCCACTA 65 CGGATGTAGCCACTA * * * * * 50987648 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC 50987711 CCGGAT 64 CCGGAT 50987717 ATCATTCAAT Statistics Matches: 61, Mismatches: 6, Indels: 5 0.85 0.08 0.07 Matches are distributed among these distances: 79 15 0.25 80 46 0.75 ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27 Consensus pattern (79 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC GGATGTAGCCACTA Found at i:50995575 original size:40 final size:39 Alignment explanation

Indices: 50995530--50995656 Score: 130 Period size: 40 Copynumber: 3.2 Consensus size: 39 50995520 CGGAATATAA 50995530 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC * * * * 50995570 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC * * * * * 50995610 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC 50995650 CCGGATA 1 CCGGATA 50995657 AATTTCCAGC Statistics Matches: 70, Mismatches: 13, Indels: 8 0.77 0.14 0.09 Matches are distributed among these distances: 38 1 0.01 40 67 0.96 41 1 0.01 42 1 0.01 ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24 Consensus pattern (39 bp): CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC Found at i:50997747 original size:54 final size:53 Alignment explanation

Indices: 50997611--50997749 Score: 156 Period size: 53 Copynumber: 2.6 Consensus size: 53 50997601 ATATATCATA * 50997611 CCGATGCCATAGCCCAGCTATGGTCTTATACGGATCGCTTGTATCACTTTAAT 1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGATCACTTGTATCACTTTAAT * * * * * ** 50997664 CCAAAGCCATAGCCCAGCTGTGGTATTATACAGGAATCAC-T-TATCAGTTGTTTT 1 CCGATGCCATAGCCCAGCTATGGTCTTATAC-GG-ATCACTTGTATCACTT-TAAT * 50997718 CCGATGCCATAGCCCAACTATGGTCTTATACG 1 CCGATGCCATAGCCCAGCTATGGTCTTATACG 50997750 AATATCGCTT Statistics Matches: 70, Mismatches: 13, Indels: 6 0.79 0.15 0.07 Matches are distributed among these distances: 53 35 0.50 54 31 0.44 55 4 0.06 ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30 Consensus pattern (53 bp): CCGATGCCATAGCCCAGCTATGGTCTTATACGGATCACTTGTATCACTTTAAT Found at i:50997761 original size:54 final size:52 Alignment explanation

Indices: 50997611--50997769 Score: 167 Period size: 54 Copynumber: 3.0 Consensus size: 52 50997601 ATATATCATA * * 50997611 CCGATGCCATAGCCCAGCTATGGTCTTATACGGATCGCTTGTATCACTT-TAAT 1 CCGATGCCATAGCCCAGCTATGGTCTTATACGAATCGC-T-TATCACTTGTTAT * * * * * * * 50997664 CCAAAGCCATAGCCCAGCTGTGGTATTATACAGGAATCACTTATCAGTTGTTTT 1 CCGATGCCATAGCCCAGCTATGGTCTTATAC--GAATCGCTTATCACTTGTTAT * 50997718 CCGATGCCATAGCCCAACTATGGTCTTATACGAATATCGCTTATCACTTGTT 1 CCGATGCCATAGCCCAGCTATGGTCTTATACG-A-ATCGCTTATCACTTGTT 50997770 GCCATGGTCC Statistics Matches: 85, Mismatches: 16, Indels: 9 0.77 0.15 0.08 Matches are distributed among these distances: 52 1 0.01 53 35 0.41 54 44 0.52 55 5 0.06 ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32 Consensus pattern (52 bp): CCGATGCCATAGCCCAGCTATGGTCTTATACGAATCGCTTATCACTTGTTAT Found at i:51006660 original size:37 final size:38 Alignment explanation

Indices: 51006592--51006682 Score: 175 Period size: 37 Copynumber: 2.4 Consensus size: 38 51006582 GTTTTTGGAT 51006592 GACAAGGGTTTTTACTCTTTTTTTTTTTTTTTGATAAA 1 GACAAGGGTTTTTACTCTTTTTTTTTTTTTTTGATAAA 51006630 GACAAGGGTTTTTACTC-TTTTTTTTTTTTTTGATAAA 1 GACAAGGGTTTTTACTCTTTTTTTTTTTTTTTGATAAA 51006667 GACAAGGGTTTTTACT 1 GACAAGGGTTTTTACT 51006683 TATTACACAT Statistics Matches: 53, Mismatches: 0, Indels: 1 0.98 0.00 0.02 Matches are distributed among these distances: 37 36 0.68 38 17 0.32 ACGTcount: A:0.22, C:0.09, G:0.15, T:0.54 Consensus pattern (38 bp): GACAAGGGTTTTTACTCTTTTTTTTTTTTTTTGATAAA Found at i:51014597 original size:43 final size:43 Alignment explanation

Indices: 51014549--51014640 Score: 184 Period size: 43 Copynumber: 2.1 Consensus size: 43 51014539 TAAACAAAAT 51014549 AAACAAATAAATAAACTCTAACTCTTGATTTTTCCCATCTTCC 1 AAACAAATAAATAAACTCTAACTCTTGATTTTTCCCATCTTCC 51014592 AAACAAATAAATAAACTCTAACTCTTGATTTTTCCCATCTTCC 1 AAACAAATAAATAAACTCTAACTCTTGATTTTTCCCATCTTCC 51014635 AAACAA 1 AAACAA 51014641 TTGGTCTTGA Statistics Matches: 49, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 43 49 1.00 ACGTcount: A:0.40, C:0.25, G:0.02, T:0.33 Consensus pattern (43 bp): AAACAAATAAATAAACTCTAACTCTTGATTTTTCCCATCTTCC Found at i:51023320 original size:18 final size:18 Alignment explanation

Indices: 51023280--51023322 Score: 52 Period size: 18 Copynumber: 2.4 Consensus size: 18 51023270 GTTCAAGGTA 51023280 TAATTAATTTAAAATTTT 1 TAATTAATTTAAAATTTT * * 51023298 CAATTAA-TTAAATTTATT 1 TAATTAATTTAAAATT-TT 51023316 TAATTAA 1 TAATTAA 51023323 AAATCTATTC Statistics Matches: 21, Mismatches: 3, Indels: 2 0.81 0.12 0.08 Matches are distributed among these distances: 17 7 0.33 18 14 0.67 ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51 Consensus pattern (18 bp): TAATTAATTTAAAATTTT Found at i:51024978 original size:27 final size:27 Alignment explanation

Indices: 51024940--51025006 Score: 107 Period size: 27 Copynumber: 2.5 Consensus size: 27 51024930 TTGTCACATT * 51024940 TCACTTTGCCATATTTGGCACTCTTTA 1 TCACTTTGCCATATTTGGCACGCTTTA * 51024967 TCACTTTGCCATGTTTGGCACGCTTTA 1 TCACTTTGCCATATTTGGCACGCTTTA * 51024994 TCACTTCGCCATA 1 TCACTTTGCCATA 51025007 GTTCAACTAT Statistics Matches: 36, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 27 36 1.00 ACGTcount: A:0.18, C:0.28, G:0.13, T:0.40 Consensus pattern (27 bp): TCACTTTGCCATATTTGGCACGCTTTA Found at i:51036932 original size:40 final size:40 Alignment explanation

Indices: 51036877--51036957 Score: 162 Period size: 40 Copynumber: 2.0 Consensus size: 40 51036867 GAGGGTTGAG 51036877 CACCAGTTGCTGCAACTAGTGTTTATACTTATAAAAATAT 1 CACCAGTTGCTGCAACTAGTGTTTATACTTATAAAAATAT 51036917 CACCAGTTGCTGCAACTAGTGTTTATACTTATAAAAATAT 1 CACCAGTTGCTGCAACTAGTGTTTATACTTATAAAAATAT 51036957 C 1 C 51036958 CTTTCTTTCA Statistics Matches: 41, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 40 41 1.00 ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35 Consensus pattern (40 bp): CACCAGTTGCTGCAACTAGTGTTTATACTTATAAAAATAT Found at i:51039401 original size:12 final size:12 Alignment explanation

Indices: 51039384--51039410 Score: 54 Period size: 12 Copynumber: 2.2 Consensus size: 12 51039374 ACTAACAGCC 51039384 CATCCAAACATT 1 CATCCAAACATT 51039396 CATCCAAACATT 1 CATCCAAACATT 51039408 CAT 1 CAT 51039411 AGCAAGGGCA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.41, C:0.33, G:0.00, T:0.26 Consensus pattern (12 bp): CATCCAAACATT Found at i:51041134 original size:47 final size:47 Alignment explanation

Indices: 51041078--51041309 Score: 151 Period size: 47 Copynumber: 4.8 Consensus size: 47 51041068 GATATTTGAT * * * 51041078 TTCCATATAAGACCATAGTTGGGCTATGACATCGGTGTGATATGTTC 1 TTCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTGATATGTGC * * * * 51041125 TTTCGTATAAAACTATAGTTGGACTATGGCATCGGTATGATGTGATTATGTGC 1 TTCCGTATAAGACCATAGTTGGGCTATGGCATC-G---G-TGTGA-TATGTGC * * * * 51041178 TTCCGTATAAGATCATATTTGGGATATGGTATCGGTGTGATATGTGC 1 TTCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTGATATGTGC * * * * ** * * * * 51041225 TTCTGTGTAATACTATAACTGAGATATTGCATCAGTGTGATATGTG- 1 TTCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTGATATGTGC * * * * * * * 51041271 ATCTGTGTAAGACCATGGCTGGGTTATGGCTTCGGTGTG 1 TTCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTG 51041310 TGACATATAA Statistics Matches: 143, Mismatches: 36, Indels: 13 0.74 0.19 0.07 Matches are distributed among these distances: 46 29 0.20 47 69 0.48 48 6 0.04 49 1 0.01 51 1 0.01 52 6 0.04 53 31 0.22 ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37 Consensus pattern (47 bp): TTCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGTGATATGTGC Found at i:51041309 original size:46 final size:47 Alignment explanation

Indices: 51041200--51041309 Score: 114 Period size: 46 Copynumber: 2.4 Consensus size: 47 51041190 TCATATTTGG * * * * 51041200 GATATGGTATCGGTGTGATATGTGCTTCTGTGTAATACTATAACTGA 1 GATATGGCATCGGTGTGATATGTGCATCTGTGTAAGACCATAACTGA * * ** * 51041247 GATATTGCATCAGTGTGATATGTG-ATCTGTGTAAGACCATGGCTGG 1 GATATGGCATCGGTGTGATATGTGCATCTGTGTAAGACCATAACTGA * * 51041293 GTTATGGCTTCGGTGTG 1 GATATGGCATCGGTGTG 51041310 TGACATATAA Statistics Matches: 50, Mismatches: 13, Indels: 1 0.78 0.20 0.02 Matches are distributed among these distances: 46 29 0.58 47 21 0.42 ACGTcount: A:0.22, C:0.12, G:0.30, T:0.36 Consensus pattern (47 bp): GATATGGCATCGGTGTGATATGTGCATCTGTGTAAGACCATAACTGA Found at i:51041503 original size:22 final size:21 Alignment explanation

Indices: 51041474--51041515 Score: 57 Period size: 22 Copynumber: 2.0 Consensus size: 21 51041464 ATTGTTTTAA * * 51041474 AACGTTTTGTTTTACTAAAAC 1 AACGTTTTGGTTTACGAAAAC 51041495 AACGATTTTGGTTTACGAAAA 1 AACG-TTTTGGTTTACGAAAA 51041516 TCAAGAAAAC Statistics Matches: 18, Mismatches: 2, Indels: 1 0.86 0.10 0.05 Matches are distributed among these distances: 21 4 0.22 22 14 0.78 ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38 Consensus pattern (21 bp): AACGTTTTGGTTTACGAAAAC Found at i:51042820 original size:3 final size:3 Alignment explanation

Indices: 51042812--51042854 Score: 59 Period size: 3 Copynumber: 14.3 Consensus size: 3 51042802 GAATTAAAAT * * * 51042812 TAA TAA TAA CAA AAA TAA TAA TAA TAA CAA TAA TAA TAA TAA T 1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T 51042855 GACACAACAA Statistics Matches: 35, Mismatches: 5, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 3 35 1.00 ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28 Consensus pattern (3 bp): TAA Found at i:51042835 original size:18 final size:18 Alignment explanation

Indices: 51042812--51042854 Score: 77 Period size: 18 Copynumber: 2.4 Consensus size: 18 51042802 GAATTAAAAT 51042812 TAATAATAACAAAAATAA 1 TAATAATAACAAAAATAA * 51042830 TAATAATAACAATAATAA 1 TAATAATAACAAAAATAA 51042848 TAATAAT 1 TAATAAT 51042855 GACACAACAA Statistics Matches: 24, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 18 24 1.00 ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28 Consensus pattern (18 bp): TAATAATAACAAAAATAA Found at i:51042851 original size:15 final size:15 Alignment explanation

Indices: 51042806--51042853 Score: 69 Period size: 15 Copynumber: 3.2 Consensus size: 15 51042796 TTAAAAGAAT * 51042806 TAAAATTAATAATAA 1 TAAAAATAATAATAA * 51042821 CAAAAATAATAATAA 1 TAAAAATAATAATAA * 51042836 TAACAATAATAATAA 1 TAAAAATAATAATAA 51042851 TAA 1 TAA 51042854 TGACACAACA Statistics Matches: 29, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 15 29 1.00 ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27 Consensus pattern (15 bp): TAAAAATAATAATAA Found at i:51042961 original size:7 final size:7 Alignment explanation

Indices: 51042945--51042990 Score: 60 Period size: 7 Copynumber: 6.7 Consensus size: 7 51042935 GTCAATAACG 51042945 ATAA-TA 1 ATAATTA 51042951 ATAATTA 1 ATAATTA 51042958 ATAATTA 1 ATAATTA 51042965 ATAATTA 1 ATAATTA 51042972 ATAA-TA 1 ATAATTA * 51042978 CTAAATTA 1 AT-AATTA 51042986 ATAAT 1 ATAAT 51042991 AAAGTAATAA Statistics Matches: 35, Mismatches: 2, Indels: 5 0.83 0.05 0.12 Matches are distributed among these distances: 6 7 0.20 7 25 0.71 8 3 0.09 ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39 Consensus pattern (7 bp): ATAATTA Found at i:51042968 original size:14 final size:13 Alignment explanation

Indices: 51042945--51042992 Score: 69 Period size: 14 Copynumber: 3.5 Consensus size: 13 51042935 GTCAATAACG 51042945 ATAATAATAATTA 1 ATAATAATAATTA 51042958 ATAATTAATAATTA 1 ATAA-TAATAATTA * 51042972 ATAATACTAAATTA 1 ATAATAAT-AATTA 51042986 ATAATAA 1 ATAATAA 51042993 AGTAATAAGC Statistics Matches: 31, Mismatches: 2, Indels: 3 0.86 0.06 0.08 Matches are distributed among these distances: 13 7 0.23 14 24 0.77 ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38 Consensus pattern (13 bp): ATAATAATAATTA Found at i:51043112 original size:3 final size:3 Alignment explanation

Indices: 51043104--51043239 Score: 73 Period size: 3 Copynumber: 45.0 Consensus size: 3 51043094 AACAATACAT ** * * 51043104 TAA TAA TAA TAA T-A TGT TAA TAA CAA TAA TAA TAA TATA TAA AAA 1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA * * * * * * * 51043149 AAA GGGAA TAA TAA TAG T-A TAG TAA AAA TAA TAA T-G TAT TAA TAA 1 TAA --TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA * * * 51043194 TAA TGA TAA TAA TAA TAA -AA TGAGA TAA TAA TAT TAA TAT TAA TAA 1 TAA TAA TAA TAA TAA TAA TAA T-A-A TAA TAA TAA TAA TAA TAA TAA 51043240 GACGTAGAGG Statistics Matches: 101, Mismatches: 23, Indels: 18 0.71 0.16 0.13 Matches are distributed among these distances: 2 6 0.06 3 86 0.85 4 5 0.05 5 4 0.04 ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32 Consensus pattern (3 bp): TAA Found at i:51043195 original size:17 final size:17 Alignment explanation

Indices: 51043104--51043233 Score: 69 Period size: 17 Copynumber: 7.9 Consensus size: 17 51043094 AACAATACAT 51043104 TAATAATAATAATAT-G 1 TAATAATAATAATATAG * 51043120 TTAATAACAATAATA-A- 1 -TAATAATAATAATATAG * * 51043136 TAATATATAA-AAAAAAGG 1 TAATA-ATAATAATATA-G * * 51043154 GAATAATAATAGTATAG 1 TAATAATAATAATATAG * * * 51043171 TAAAAATAATAATGTAT 1 TAATAATAATAATATAG * 51043188 TAATAATAATGATA-A- 1 TAATAATAATAATATAG * 51043203 TAATAATAA-AAT-GAG 1 TAATAATAATAATATAG * 51043218 ATAATAATATTAATAT 1 -TAATAATAATAATAT 51043234 TAATAAGACG Statistics Matches: 84, Mismatches: 18, Indels: 21 0.68 0.15 0.17 Matches are distributed among these distances: 14 3 0.04 15 17 0.20 16 13 0.15 17 44 0.52 18 7 0.08 ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32 Consensus pattern (17 bp): TAATAATAATAATATAG Found at i:51043510 original size:40 final size:40 Alignment explanation

Indices: 51043466--51043551 Score: 118 Period size: 40 Copynumber: 2.1 Consensus size: 40 51043456 TCAAATACAT 51043466 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA 1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA * * * * * 51043506 TTAAAACAATTCTTAAAACAATACACAAATTAAAAATATA 1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA * 51043546 ATAAAA 1 TTAAAA 51043552 ATTGATTATA Statistics Matches: 40, Mismatches: 6, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 40 40 1.00 ACGTcount: A:0.66, C:0.09, G:0.01, T:0.23 Consensus pattern (40 bp): TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA Found at i:51043595 original size:23 final size:23 Alignment explanation

Indices: 51043567--51043611 Score: 63 Period size: 23 Copynumber: 2.0 Consensus size: 23 51043557 TTATATTAAA * * 51043567 ATTAAAATTAAAATATAAATATG 1 ATTAAAAATAAAAAATAAATATG * 51043590 ATTAAAAATAAAAAATATATAT 1 ATTAAAAATAAAAAATAAATAT 51043612 TTATTATATA Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 23 19 1.00 ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33 Consensus pattern (23 bp): ATTAAAAATAAAAAATAAATATG Found at i:51043903 original size:18 final size:18 Alignment explanation

Indices: 51043880--51043914 Score: 70 Period size: 18 Copynumber: 1.9 Consensus size: 18 51043870 AAAAAAATAT 51043880 AATAATAATAATAATGGA 1 AATAATAATAATAATGGA 51043898 AATAATAATAATAATGG 1 AATAATAATAATAATGG 51043915 CATTAGAATA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29 Consensus pattern (18 bp): AATAATAATAATAATGGA Found at i:51046926 original size:26 final size:27 Alignment explanation

Indices: 51046876--51046926 Score: 70 Period size: 26 Copynumber: 1.9 Consensus size: 27 51046866 AGTTAATAAA * 51046876 TTCTCTTTGAGTTTTCTTTTTAAGAAT 1 TTCTCTTTGAGTTTTCTTTTGAAGAAT 51046903 TTCTC-TTGAG-TTTCTTTTAGAAGA 1 TTCTCTTTGAGTTTTCTTTT-GAAGA 51046927 GTTGTAACAA Statistics Matches: 22, Mismatches: 1, Indels: 3 0.85 0.04 0.12 Matches are distributed among these distances: 25 8 0.36 26 9 0.41 27 5 0.23 ACGTcount: A:0.20, C:0.12, G:0.14, T:0.55 Consensus pattern (27 bp): TTCTCTTTGAGTTTTCTTTTGAAGAAT Found at i:51049144 original size:8 final size:8 Alignment explanation

Indices: 51049133--51049157 Score: 50 Period size: 8 Copynumber: 3.1 Consensus size: 8 51049123 TTTAATAAGA 51049133 TATTTTAT 1 TATTTTAT 51049141 TATTTTAT 1 TATTTTAT 51049149 TATTTTAT 1 TATTTTAT 51049157 T 1 T 51049158 TAGTCTATAT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 17 1.00 ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76 Consensus pattern (8 bp): TATTTTAT Found at i:51052149 original size:12 final size:12 Alignment explanation

Indices: 51052134--51052168 Score: 52 Period size: 12 Copynumber: 2.9 Consensus size: 12 51052124 CTATTGCTAC 51052134 TGTTACTGTTAT 1 TGTTACTGTTAT * 51052146 TGTTACTGTTGT 1 TGTTACTGTTAT * 51052158 TGTTACCGTTA 1 TGTTACTGTTA 51052169 CAGTGTATTC Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 12 20 1.00 ACGTcount: A:0.14, C:0.11, G:0.20, T:0.54 Consensus pattern (12 bp): TGTTACTGTTAT Found at i:51052162 original size:18 final size:18 Alignment explanation

Indices: 51052119--51052155 Score: 56 Period size: 18 Copynumber: 2.1 Consensus size: 18 51052109 TGTGTACCGC * 51052119 TACTGCTATTGCTACTGT 1 TACTGTTATTGCTACTGT * 51052137 TACTGTTATTGTTACTGT 1 TACTGTTATTGCTACTGT 51052155 T 1 T 51052156 GTTGTTACCG Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51 Consensus pattern (18 bp): TACTGTTATTGCTACTGT Found at i:51052767 original size:26 final size:26 Alignment explanation

Indices: 51052738--51052845 Score: 180 Period size: 26 Copynumber: 4.2 Consensus size: 26 51052728 TGGTACAAAT * 51052738 TGATAATGGGTTAGGTAAATGTTTCA 1 TGATAATGGGTTAGGTAAATGTTCCA * * 51052764 TGATAATGGATTAGGTAAATATTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA 51052790 TGATAATGGGTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA * 51052816 TGATAATGGTTTAGGTAAATGTTCCA 1 TGATAATGGGTTAGGTAAATGTTCCA 51052842 TGAT 1 TGAT 51052846 GGGCATTTCA Statistics Matches: 76, Mismatches: 6, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 26 76 1.00 ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37 Consensus pattern (26 bp): TGATAATGGGTTAGGTAAATGTTCCA Found at i:51054506 original size:27 final size:27 Alignment explanation

Indices: 51054466--51054624 Score: 182 Period size: 27 Copynumber: 5.9 Consensus size: 27 51054456 AGGAAGCGTC * 51054466 CTGGTGGCTATGCCACAATTATCTGAT 1 CTGGTGGCTCTGCCACAATTATCTGAT * 51054493 CTGGTGGCTCTGCCAC-ATATATCTGTT 1 CTGGTGGCTCTGCCACAAT-TATCTGAT * * 51054520 CTGGTGGCTATGCCACGATTATCTGAT 1 CTGGTGGCTCTGCCACAATTATCTGAT * 51054547 CTGGTGGCTCTGCCAC-ATATATCTGTT 1 CTGGTGGCTCTGCCACAAT-TATCTGAT * 51054574 CTGGTGGCTCTGCCACAA-TATTTGTAT 1 CTGGTGGCTCTGCCACAATTATCTG-AT * * * 51054601 CTGGTGACTTTGTCACAA-TATCTG 1 CTGGTGGCTCTGCCACAATTATCTG 51054625 GCAGCCTCGC Statistics Matches: 115, Mismatches: 12, Indels: 10 0.84 0.09 0.07 Matches are distributed among these distances: 26 9 0.08 27 103 0.90 28 3 0.03 ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36 Consensus pattern (27 bp): CTGGTGGCTCTGCCACAATTATCTGAT Found at i:51054548 original size:54 final size:53 Alignment explanation

Indices: 51054466--51054624 Score: 230 Period size: 54 Copynumber: 3.0 Consensus size: 53 51054456 AGGAAGCGTC 51054466 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 51054520 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT * * * * * * 51054574 CTGGTGGCTCTGCCACAATATTTGTATCTGGTGACTTTGTCACA-ATATCTG 1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTGGCTCTGCCACATATATCTG 51054625 GCAGCCTCGC Statistics Matches: 97, Mismatches: 7, Indels: 3 0.91 0.07 0.03 Matches are distributed among these distances: 53 13 0.13 54 84 0.87 ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36 Consensus pattern (53 bp): CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT Found at i:51055777 original size:26 final size:26 Alignment explanation

Indices: 51055748--51055802 Score: 74 Period size: 26 Copynumber: 2.1 Consensus size: 26 51055738 ACAAAGAAGG * * 51055748 AAAAAACAAAAAAAGAAGCAGGAAAC 1 AAAAAACAAAAAAACAAGCAAGAAAC * * 51055774 AAAAAGCAAAAAAACAAGGAAGAAAC 1 AAAAAACAAAAAAACAAGCAAGAAAC 51055800 AAA 1 AAA 51055803 CAGAAAATAG Statistics Matches: 25, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 26 25 1.00 ACGTcount: A:0.75, C:0.11, G:0.15, T:0.00 Consensus pattern (26 bp): AAAAAACAAAAAAACAAGCAAGAAAC Found at i:51056995 original size:24 final size:25 Alignment explanation

Indices: 51056959--51057056 Score: 112 Period size: 24 Copynumber: 4.0 Consensus size: 25 51056949 TTATGATTTT * * 51056959 TTTATATACATTATTTATTCTAAAC 1 TTTATATATATTATTTATTTTAAAC * 51056984 TTT-TACATATTATTTATTTTAAA- 1 TTTATATATATTATTTATTTTAAAC * * * 51057007 TTTATATACATTATGTA-GTTAAAC 1 TTTATATATATTATTTATTTTAAAC 51057031 TATTATATATATTATTTATTTTAAAC 1 T-TTATATATATTATTTATTTTAAAC 51057057 CCTCTTTATT Statistics Matches: 59, Mismatches: 10, Indels: 7 0.78 0.13 0.09 Matches are distributed among these distances: 23 8 0.14 24 28 0.47 25 17 0.29 26 6 0.10 ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54 Consensus pattern (25 bp): TTTATATATATTATTTATTTTAAAC Found at i:51057015 original size:48 final size:49 Alignment explanation

Indices: 51056959--51057055 Score: 144 Period size: 48 Copynumber: 2.0 Consensus size: 49 51056949 TTATGATTTT * * 51056959 TTTATATACATTATTTATTCTAAACT-TT-TACATATTATTTATTTTAAA 1 TTTATATACATTATGTAGT-TAAACTATTATACATATTATTTATTTTAAA * 51057007 TTTATATACATTATGTAGTTAAACTATTATATATATTATTTATTTTAAA 1 TTTATATACATTATGTAGTTAAACTATTATACATATTATTTATTTTAAA 51057056 CCCTCTTTAT Statistics Matches: 44, Mismatches: 3, Indels: 3 0.88 0.06 0.06 Matches are distributed among these distances: 47 6 0.14 48 19 0.43 49 19 0.43 ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55 Consensus pattern (49 bp): TTTATATACATTATGTAGTTAAACTATTATACATATTATTTATTTTAAA Found at i:51057144 original size:25 final size:25 Alignment explanation

Indices: 51057116--51057163 Score: 60 Period size: 25 Copynumber: 1.9 Consensus size: 25 51057106 TTTTTTACTA * 51057116 TTTTACATATTATTCACTTTAAATT 1 TTTTACATAATATTCACTTTAAATT * * * 51057141 TTTTATATAATGTTCATTTTAAA 1 TTTTACATAATATTCACTTTAAA 51057164 ATGTTTCCAA Statistics Matches: 19, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 25 19 1.00 ACGTcount: A:0.33, C:0.08, G:0.02, T:0.56 Consensus pattern (25 bp): TTTTACATAATATTCACTTTAAATT Found at i:51057372 original size:23 final size:23 Alignment explanation

Indices: 51057325--51057375 Score: 61 Period size: 23 Copynumber: 2.2 Consensus size: 23 51057315 GTATGGATCA * 51057325 TTTATTTTCAAATTTTCATATGT 1 TTTATTTTCAAATTTTCATACGT 51057348 TTTATTTT-AAACTCTTT-ATACGT 1 TTTATTTTCAAA-T-TTTCATACGT 51057371 TTTAT 1 TTTAT 51057376 ATATATATAT Statistics Matches: 25, Mismatches: 1, Indels: 4 0.83 0.03 0.13 Matches are distributed among these distances: 22 3 0.12 23 19 0.76 24 3 0.12 ACGTcount: A:0.25, C:0.10, G:0.04, T:0.61 Consensus pattern (23 bp): TTTATTTTCAAATTTTCATACGT Found at i:51057380 original size:2 final size:2 Alignment explanation

Indices: 51057373--51057399 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 51057363 TTATACGTTT 51057373 TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA T 51057400 TTATGTGAAG Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:51058564 original size:18 final size:18 Alignment explanation

Indices: 51058502--51058568 Score: 64 Period size: 18 Copynumber: 3.7 Consensus size: 18 51058492 GATACTCACA 51058502 GTTACTGAATAATTGA-C 1 GTTACTGAATAATTGATC * * * 51058519 TGATACTGAATAACTGATT 1 -GTTACTGAATAATTGATC * * * 51058538 GTCATTGAACAATTGATC 1 GTTACTGAATAATTGATC 51058556 GTTACTGAATAAT 1 GTTACTGAATAAT 51058569 ATTGATAAAG Statistics Matches: 36, Mismatches: 12, Indels: 2 0.72 0.24 0.04 Matches are distributed among these distances: 18 36 1.00 ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36 Consensus pattern (18 bp): GTTACTGAATAATTGATC Found at i:51060182 original size:46 final size:44 Alignment explanation

Indices: 51060128--51060237 Score: 139 Period size: 44 Copynumber: 2.5 Consensus size: 44 51060118 GACAGAACGA * 51060128 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG 1 AATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAGG * * * 51060174 ATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAGATAGG 1 AATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAGG * ** 51060218 AATAATTCATGTAAGTCCAT 1 AATGAGCCATGTAAGTCCAT 51060238 GTCAAAGACA Statistics Matches: 56, Mismatches: 8, Indels: 2 0.85 0.12 0.03 Matches are distributed among these distances: 44 34 0.61 46 22 0.39 ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30 Consensus pattern (44 bp): AATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAGG Found at i:51060229 original size:44 final size:45 Alignment explanation

Indices: 51060132--51060256 Score: 135 Period size: 44 Copynumber: 2.8 Consensus size: 45 51060122 GAACGAAATG * * * 51060132 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTG 1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATA * * 51060178 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGATAGGAATA 1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATA ** * * * 51060222 ATTCATGTAAGTCCATGTCAAAGACATGGCATTGG 1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG 51060257 CAGGATATTG Statistics Matches: 66, Mismatches: 11, Indels: 4 0.81 0.14 0.05 Matches are distributed among these distances: 44 35 0.53 45 1 0.02 46 30 0.45 ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29 Consensus pattern (45 bp): AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATA Found at i:51063616 original size:48 final size:48 Alignment explanation

Indices: 51063538--51063631 Score: 152 Period size: 48 Copynumber: 2.0 Consensus size: 48 51063528 AAGATACTCA * 51063538 TAGACTATTCTTTCGACCTCATCTATCAAAACAACTTCCTAAGGTCGG 1 TAGACTATTCTTTCGACCTCATCTACCAAAACAACTTCCTAAGGTCGG * * * 51063586 TAGACTATTCTTTCGACCTCCTCTACCAAAATAACTTCTTAAGGTC 1 TAGACTATTCTTTCGACCTCATCTACCAAAACAACTTCCTAAGGTC 51063632 ATCAATCATA Statistics Matches: 42, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 48 42 1.00 ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33 Consensus pattern (48 bp): TAGACTATTCTTTCGACCTCATCTACCAAAACAACTTCCTAAGGTCGG Found at i:51063904 original size:11 final size:11 Alignment explanation

Indices: 51063890--51063929 Score: 71 Period size: 11 Copynumber: 3.6 Consensus size: 11 51063880 AGTCGTCGAA 51063890 TGAAAATTGAT 1 TGAAAATTGAT 51063901 TGAAAATTGAT 1 TGAAAATTGAT * 51063912 TGAAAATCGAT 1 TGAAAATTGAT 51063923 TGAAAAT 1 TGAAAAT 51063930 CGAAACACTA Statistics Matches: 28, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 11 28 1.00 ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33 Consensus pattern (11 bp): TGAAAATTGAT Found at i:51063930 original size:11 final size:11 Alignment explanation

Indices: 51063885--51063932 Score: 69 Period size: 11 Copynumber: 4.4 Consensus size: 11 51063875 TTCACAGTCG * 51063885 TCGAATGAAAA 1 TCGATTGAAAA * 51063896 TTGATTGAAAA 1 TCGATTGAAAA * 51063907 TTGATTGAAAA 1 TCGATTGAAAA 51063918 TCGATTGAAAA 1 TCGATTGAAAA 51063929 TCGA 1 TCGA 51063933 AACACTAAAA Statistics Matches: 34, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 34 1.00 ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29 Consensus pattern (11 bp): TCGATTGAAAA Found at i:51065278 original size:31 final size:31 Alignment explanation

Indices: 51065243--51065301 Score: 73 Period size: 31 Copynumber: 1.9 Consensus size: 31 51065233 TTGTAGCCGA * * * 51065243 AGCTATCACTATTCACTGATCAGGTAGCTAG 1 AGCTACCACTATTCACTAATCAAGTAGCTAG * * 51065274 AGCTACCATTTTTCACTAATCAAGTAGC 1 AGCTACCACTATTCACTAATCAAGTAGC 51065302 CGATGATCAG Statistics Matches: 23, Mismatches: 5, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 31 23 1.00 ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31 Consensus pattern (31 bp): AGCTACCACTATTCACTAATCAAGTAGCTAG Found at i:51065326 original size:46 final size:46 Alignment explanation

Indices: 51065259--51065350 Score: 123 Period size: 46 Copynumber: 2.0 Consensus size: 46 51065249 CACTATTCAC * * 51065259 TGATCAGGTAGCTAGAGCTACCATTTTTCACTAATCAAGTAGCCGA 1 TGATCAGGTAGCGAGAGCTACCACTTTTCACTAATCAAGTAGCCGA * * * 51065305 TGATCAGGTAGCCGA-AGCTACCACTTTTCATTGATCAGGTAGCCGA 1 TGATCAGGTAG-CGAGAGCTACCACTTTTCACTAATCAAGTAGCCGA 51065351 AGCTACCACT Statistics Matches: 40, Mismatches: 5, Indels: 2 0.85 0.11 0.04 Matches are distributed among these distances: 46 38 0.95 47 2 0.05 ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27 Consensus pattern (46 bp): TGATCAGGTAGCGAGAGCTACCACTTTTCACTAATCAAGTAGCCGA Found at i:51065343 original size:31 final size:31 Alignment explanation

Indices: 51065305--51065363 Score: 118 Period size: 31 Copynumber: 1.9 Consensus size: 31 51065295 AAGTAGCCGA 51065305 TGATCAGGTAGCCGAAGCTACCACTTTTCAT 1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT 51065336 TGATCAGGTAGCCGAAGCTACCACTTTT 1 TGATCAGGTAGCCGAAGCTACCACTTTT 51065364 TACTTGTCAT Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 31 28 1.00 ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29 Consensus pattern (31 bp): TGATCAGGTAGCCGAAGCTACCACTTTTCAT Found at i:51065436 original size:50 final size:50 Alignment explanation

Indices: 51065343--51065519 Score: 291 Period size: 50 Copynumber: 3.5 Consensus size: 50 51065333 CATTGATCAG * * * 51065343 GTAGCCGAAGCTACCACTTTTTACTTGTCATTTGTCCTTGATCAGATAAGT 1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT * 51065394 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT 1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT * * 51065444 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT 1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT 51065494 GTAGCCGAAGCTATCACTTATCACTT 1 GTAGCCGAAGCTATCACTTATCACTT 51065520 GTTGCCCTGG Statistics Matches: 119, Mismatches: 7, Indels: 1 0.94 0.06 0.01 Matches are distributed among these distances: 50 97 0.82 51 22 0.18 ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36 Consensus pattern (50 bp): GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT Found at i:51069431 original size:105 final size:105 Alignment explanation

Indices: 51069249--51069445 Score: 306 Period size: 105 Copynumber: 1.9 Consensus size: 105 51069239 GTTGAGGTCC * * 51069249 GAAAATTAAACTACAACTACTAATTTTAGAAGTTGAAATACACCACACATAATATTCAATTATAT 1 GAAAATTAAACTACAACTACTAATATTAGAAGTTGAAATACACCACACATAATATTCAATTATAG * 51069314 TTTTATCAAAGGTTGTTCACTTTTAGCTTAGTTGGAGTCT 66 ATTTATCAAAGGTTGTTCACTTTTAGCTTAGTTGGAGTCT * * * * 51069354 GAAAATTGAACTACAACT-CTTAGTATTAGAAGTTGAAATACACCACACATAGTATTCATTTATA 1 GAAAATTAAACTACAACTAC-TAATATTAGAAGTTGAAATACACCACACATAATATTCAATTATA * 51069418 GATTTGTCAAAGGTTGTTCACTTTTAGC 65 GATTTATCAAAGGTTGTTCACTTTTAGC 51069446 ACTAATATGG Statistics Matches: 83, Mismatches: 8, Indels: 2 0.89 0.09 0.02 Matches are distributed among these distances: 104 1 0.01 105 82 0.99 ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36 Consensus pattern (105 bp): GAAAATTAAACTACAACTACTAATATTAGAAGTTGAAATACACCACACATAATATTCAATTATAG ATTTATCAAAGGTTGTTCACTTTTAGCTTAGTTGGAGTCT Found at i:51069583 original size:47 final size:47 Alignment explanation

Indices: 51069506--51069597 Score: 139 Period size: 47 Copynumber: 2.0 Consensus size: 47 51069496 AGATTCCACC * 51069506 TCTTATTGTTGAAGCAACACCACTTATTATGTTTATATAGATAGAAT 1 TCTTATTATTGAAGCAACACCACTTATTATGTTTATATAGATAGAAT * ** * 51069553 TCTTATTATTGAAGCGACATTACTTCTTATGTTTATATAGATAGA 1 TCTTATTATTGAAGCAACACCACTTATTATGTTTATATAGATAGA 51069598 GTTTCTTTAA Statistics Matches: 40, Mismatches: 5, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 47 40 1.00 ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42 Consensus pattern (47 bp): TCTTATTATTGAAGCAACACCACTTATTATGTTTATATAGATAGAAT Found at i:51069825 original size:76 final size:76 Alignment explanation

Indices: 51069724--51069880 Score: 260 Period size: 76 Copynumber: 2.1 Consensus size: 76 51069714 TGAGTTTTTA * * * * 51069724 TGGTGCATCATAGACACATAACGATACCTTGTTTTTACTCATTGAACTTTAAAATTAGAGGCTAC 1 TGGTTCATCATAAACACATAACGATAACTTGTTTTTACCCATTGAACTTTAAAATTAGAGGCTAC * 51069789 TAATTAAAAGT 66 TAATTAAAACT * 51069800 TGGTTCATCATAAATACATAACGATAACTTGTTTTTACCCATTGAACTTTAAAATTAGAGGCTAC 1 TGGTTCATCATAAACACATAACGATAACTTGTTTTTACCCATTGAACTTTAAAATTAGAGGCTAC 51069865 TAATTAAAACT 66 TAATTAAAACT 51069876 TGGTT 1 TGGTT 51069881 TCCATTATCA Statistics Matches: 75, Mismatches: 6, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 76 75 1.00 ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36 Consensus pattern (76 bp): TGGTTCATCATAAACACATAACGATAACTTGTTTTTACCCATTGAACTTTAAAATTAGAGGCTAC TAATTAAAACT Found at i:51107375 original size:1 final size:1 Alignment explanation

Indices: 51107371--51107403 Score: 66 Period size: 1 Copynumber: 33.0 Consensus size: 1 51107361 TTCTTTTTCC 51107371 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 51107404 AGCATTTCAG Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 32 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Found at i:51116748 original size:49 final size:49 Alignment explanation

Indices: 51116668--51116766 Score: 137 Period size: 49 Copynumber: 2.0 Consensus size: 49 51116658 AGGTAGATGG * 51116668 TAGACCTATTAGCTAAGGGGTTAGCCAATGCTTCATATCAAGAGATCAT 1 TAGACATATTAGCTAAGGGGTTAGCCAATGCTTCATATCAAGAGATCAT * * * * 51116717 TAGACATATTATG-TAAGGGGTTATCCGATGCTTCATTTCAAGTGATCAT 1 TAGACATATTA-GCTAAGGGGTTAGCCAATGCTTCATATCAAGAGATCAT 51116766 T 1 T 51116767 GGCAAGTTGG Statistics Matches: 44, Mismatches: 5, Indels: 2 0.86 0.10 0.04 Matches are distributed among these distances: 49 43 0.98 50 1 0.02 ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33 Consensus pattern (49 bp): TAGACATATTAGCTAAGGGGTTAGCCAATGCTTCATATCAAGAGATCAT Found at i:51117422 original size:22 final size:22 Alignment explanation

Indices: 51117394--51117440 Score: 67 Period size: 22 Copynumber: 2.1 Consensus size: 22 51117384 TGCAGCTACA * 51117394 TTAGAATTCATCTTAATTTCTC 1 TTAGAATTCATCATAATTTCTC * * 51117416 TTAGAATTCTTCATAATTTTTC 1 TTAGAATTCATCATAATTTCTC 51117438 TTA 1 TTA 51117441 CAGCATTTTG Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 22 22 1.00 ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53 Consensus pattern (22 bp): TTAGAATTCATCATAATTTCTC Found at i:51130435 original size:21 final size:20 Alignment explanation

Indices: 51130410--51130474 Score: 80 Period size: 21 Copynumber: 3.2 Consensus size: 20 51130400 TAGCCTTCGG 51130410 GCTTCCGTTTAGCACTTATGT 1 GCTTCCGTTTAGCACTT-TGT * * 51130431 GCTTCAG-TTAGC-CTTTGG 1 GCTTCCGTTTAGCACTTTGT 51130449 GCTTCCGTTTAGCACTTTTGT 1 GCTTCCGTTTAGCAC-TTTGT 51130470 GCTTC 1 GCTTC 51130475 AGTTAGATTT Statistics Matches: 37, Mismatches: 4, Indels: 6 0.79 0.09 0.13 Matches are distributed among these distances: 18 8 0.22 19 8 0.22 20 6 0.16 21 15 0.41 ACGTcount: A:0.11, C:0.25, G:0.22, T:0.43 Consensus pattern (20 bp): GCTTCCGTTTAGCACTTTGT Found at i:51130438 original size:39 final size:39 Alignment explanation

Indices: 51130392--51130480 Score: 160 Period size: 39 Copynumber: 2.3 Consensus size: 39 51130382 GCTCTGATGA 51130392 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT 1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT * * 51130431 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTTTGT 1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT 51130470 GCTTCAGTTAG 1 GCTTCAGTTAG 51130481 ATTTCGGGTA Statistics Matches: 48, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 39 48 1.00 ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40 Consensus pattern (39 bp): GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT Found at i:51136396 original size:35 final size:36 Alignment explanation

Indices: 51136330--51136457 Score: 145 Period size: 35 Copynumber: 3.5 Consensus size: 36 51136320 TCCTCATTGA * 51136330 AATACCATACCTACATTT-TCAACTCGGTATGGGA- 1 AATACCATACCTACATTTCTCAACTCAGTATGGGAT * * 51136364 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT 1 AATACCATACCTACATTTCTCAACTCAGTATGG----GAT * * * 51136404 AATACCATACCTATATTTCACAGCTCAGTAT-GGAT 1 AATACCATACCTACATTTCTCAACTCAGTATGGGAT 51136439 AATACCATACCTACATTTC 1 AATACCATACCTACATTTC 51136458 ACACTTTGCC Statistics Matches: 79, Mismatches: 9, Indels: 11 0.80 0.09 0.11 Matches are distributed among these distances: 34 17 0.22 35 33 0.42 39 3 0.04 40 26 0.33 ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33 Consensus pattern (36 bp): AATACCATACCTACATTTCTCAACTCAGTATGGGAT Found at i:51145110 original size:50 final size:51 Alignment explanation

Indices: 51145033--51145161 Score: 206 Period size: 50 Copynumber: 2.5 Consensus size: 51 51145023 GACCATGGTA 51145033 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG 1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG * * 51145084 A-AAGTGATAAGTGATAGCTTCGGCTACATTTATCTGATTAAGGACAAATG 1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG * * * 51145134 ACAAGTGAAAAGTGGTAGCTTCTGCTAC 1 ACAAGTGATAAGTGATAGCTTCGGCTAC 51145162 CTGATCAGTG Statistics Matches: 72, Mismatches: 5, Indels: 2 0.91 0.06 0.03 Matches are distributed among these distances: 50 48 0.67 51 24 0.33 ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27 Consensus pattern (51 bp): ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG Found at i:51145175 original size:31 final size:31 Alignment explanation

Indices: 51145137--51145254 Score: 200 Period size: 31 Copynumber: 3.8 Consensus size: 31 51145127 ACAAATGACA * * 51145137 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC 1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC 51145168 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC 1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC 51145199 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC 1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC * * 51145230 AGTGAATAGTGGTAGCTTCGGCTAC 1 AGTGAAAAGTGGTAGCTCCGGCTAC 51145255 AAGTGACAAG Statistics Matches: 83, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 31 83 1.00 ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25 Consensus pattern (31 bp): AGTGAAAAGTGGTAGCTCCGGCTACCTGATC Found at i:51145341 original size:47 final size:48 Alignment explanation

Indices: 51145276--51145543 Score: 252 Period size: 49 Copynumber: 5.7 Consensus size: 48 51145266 GATTTTCGTA * * * * * * 51145276 TAAGACCATATCTAGGATATGGCATC-A-GTGTGATATATGCTACCGTA 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGAT-CCGTG * * * * * 51145323 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATACGTGATTCGTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATCCGTG * * 51145369 TAAGACCATAGCTGGGTTATGGCATCGATATGTGATATGTGATTACGTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGA-TCCGTG * 51145418 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCACGTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATC-CGTG * * * 51145467 TAAGACTATAGCTGGGCTATGGCATCGATATATGA-A--T-AT--GTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATCCGTG * * 51145509 TAAGACCATAGTTGGGCTATGGCATC-ATTATGTGA 1 TAAGACCATAGCTGGGATATGGCATCGA-TATGTGA 51145544 AGATGTGTAA Statistics Matches: 196, Mismatches: 20, Indels: 15 0.85 0.09 0.06 Matches are distributed among these distances: 41 1 0.01 42 33 0.17 45 2 0.01 46 28 0.14 47 37 0.19 48 12 0.06 49 83 0.42 ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30 Consensus pattern (48 bp): TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATCCGTG Found at i:51145427 original size:49 final size:49 Alignment explanation

Indices: 51145276--51145508 Score: 262 Period size: 49 Copynumber: 4.8 Consensus size: 49 51145266 GATTTTCGTA * * * * * * 51145276 TAAGACCATATCTAGGATATGGCATC-A-GTGTGATATATG-CTACCGTA 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTA-CGTG * * * * 51145323 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATACGTGATT-CGTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG * 51145369 TAAGACCATAGCTGGGTTATGGCATCGATATGTGATATGTGATTACGTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG * * 51145418 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCACGTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG * * * 51145467 TAAGACTATAGCTGGGCTATGGCATCGATATATGAATATGTG 1 TAAGACCATAGCTGGGATATGGCATCGATATGTG-ATATGTG 51145509 TAAGACCATA Statistics Matches: 166, Mismatches: 15, Indels: 7 0.88 0.08 0.04 Matches are distributed among these distances: 46 27 0.16 47 36 0.22 48 13 0.08 49 83 0.50 50 7 0.04 ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30 Consensus pattern (49 bp): TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTG Found at i:51145510 original size:42 final size:43 Alignment explanation

Indices: 51145366--51145578 Score: 173 Period size: 49 Copynumber: 4.7 Consensus size: 43 51145356 TACGTGATTC * * * 51145366 GTGTAAGACCATAGCTGGGTTATGGCATCGATATGTGATATG-TGATT 1 GTGTAAGACCATAGTTGGGCTATGGCATCG--AT-T-ATATGAAGA-T * * 51145413 ACGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATG-TGAT 1 --GTGTAAGACCATAGTTGGGCTATGGCATCG--AT-T-ATATGAAGAT * * * 51145461 CACGTGTAAGACTATAGCTGGGCTATGGCATCGA-TATATGAATAT 1 ---GTGTAAGACCATAGTTGGGCTATGGCATCGATTATATGAAGAT * 51145506 GTGTAAGACCATAGTTGGGCTATGGCATC-ATTATGTGAAGAT 1 GTGTAAGACCATAGTTGGGCTATGGCATCGATTATATGAAGAT ** 51145548 GTGTAAGACCATAGTTGAACTATGGCATCGA 1 GTGTAAGACCATAGTTGGGCTATGGCATCGA 51145579 GAAAACGAAG Statistics Matches: 150, Mismatches: 10, Indels: 14 0.86 0.06 0.08 Matches are distributed among these distances: 41 1 0.01 42 63 0.42 43 1 0.01 44 5 0.03 45 3 0.02 47 1 0.01 48 1 0.01 49 75 0.50 ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30 Consensus pattern (43 bp): GTGTAAGACCATAGTTGGGCTATGGCATCGATTATATGAAGAT Found at i:51147211 original size:13 final size:13 Alignment explanation

Indices: 51147193--51147218 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 51147183 CTTTTTCCCC 51147193 CTTTCTTTCTTTT 1 CTTTCTTTCTTTT 51147206 CTTTCTTTCTTTT 1 CTTTCTTTCTTTT 51147219 TCTCCCCTGC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77 Consensus pattern (13 bp): CTTTCTTTCTTTT Found at i:51147848 original size:13 final size:13 Alignment explanation

Indices: 51147830--51147862 Score: 52 Period size: 12 Copynumber: 2.7 Consensus size: 13 51147820 TTTTACTTCG 51147830 TAAATATTTTTAA 1 TAAATATTTTTAA 51147843 TAAATA-TTTTAA 1 TAAATATTTTTAA 51147855 -AAATATTT 1 TAAATATTT 51147863 ACGAATCAAT Statistics Matches: 19, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 11 5 0.26 12 8 0.42 13 6 0.32 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (13 bp): TAAATATTTTTAA Found at i:51147860 original size:11 final size:12 Alignment explanation

Indices: 51147830--51147862 Score: 50 Period size: 11 Copynumber: 2.8 Consensus size: 12 51147820 TTTTACTTCG 51147830 TAAATATTTTTAA 1 TAAATA-TTTTAA 51147843 TAAATATTTTAA 1 TAAATATTTTAA 51147855 -AAATATTT 1 TAAATATTT 51147863 ACGAATCAAT Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 11 8 0.40 12 6 0.30 13 6 0.30 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (12 bp): TAAATATTTTAA Found at i:51147939 original size:2 final size:2 Alignment explanation

Indices: 51147932--51147972 Score: 73 Period size: 2 Copynumber: 20.5 Consensus size: 2 51147922 TCAGGTCATT * 51147932 AC AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC A 1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A 51147973 TATATATATT Statistics Matches: 37, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 2 37 1.00 ACGTcount: A:0.51, C:0.46, G:0.00, T:0.02 Consensus pattern (2 bp): AC Found at i:51149547 original size:8 final size:8 Alignment explanation

Indices: 51149536--51149570 Score: 61 Period size: 8 Copynumber: 4.4 Consensus size: 8 51149526 TTATACTAAT 51149536 ATAATATA 1 ATAATATA * 51149544 ATAATATG 1 ATAATATA 51149552 ATAATATA 1 ATAATATA 51149560 ATAATATA 1 ATAATATA 51149568 ATA 1 ATA 51149571 TATTTACTTA Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 25 1.00 ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37 Consensus pattern (8 bp): ATAATATA Found at i:51149548 original size:13 final size:13 Alignment explanation

Indices: 51149527--51149572 Score: 56 Period size: 13 Copynumber: 3.3 Consensus size: 13 51149517 ATATTTTAAT * 51149527 TATACTAATATAA 1 TATAATAATATAA 51149540 TATAATAATATGATAA 1 TATAAT-A-AT-ATAA 51149556 TATAATAATATAA 1 TATAATAATATAA 51149569 TATA 1 TATA 51149573 TTTACTTAAA Statistics Matches: 29, Mismatches: 1, Indels: 6 0.81 0.03 0.17 Matches are distributed among these distances: 13 13 0.45 14 3 0.10 15 3 0.10 16 10 0.34 ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39 Consensus pattern (13 bp): TATAATAATATAA Found at i:51151842 original size:13 final size:14 Alignment explanation

Indices: 51151805--51151844 Score: 50 Period size: 13 Copynumber: 3.1 Consensus size: 14 51151795 GAGACCTTTA * 51151805 ATTACATATTCACT 1 ATTACATATTCAAT 51151819 ATTA-A-ATTCAAT 1 ATTACATATTCAAT 51151831 A-TACATATTCAAT 1 ATTACATATTCAAT 51151844 A 1 A 51151845 ATATTAATAA Statistics Matches: 23, Mismatches: 1, Indels: 5 0.79 0.03 0.17 Matches are distributed among these distances: 11 2 0.09 12 8 0.35 13 9 0.39 14 4 0.17 ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40 Consensus pattern (14 bp): ATTACATATTCAAT Found at i:51153600 original size:21 final size:20 Alignment explanation

Indices: 51153566--51153617 Score: 61 Period size: 20 Copynumber: 2.5 Consensus size: 20 51153556 TCTTCTTTTT * * 51153566 CCTTTTCTTT-CTTTTTTGTC 1 CCTTTTTTTTCCTTTCTT-TC 51153586 CCTTTTTTTTCCTTTCTTTC 1 CCTTTTTTTTCCTTTCTTTC 51153606 CCTTTTATTTTC 1 CCTTTT-TTTTC 51153618 TTATGCCCTA Statistics Matches: 28, Mismatches: 2, Indels: 3 0.85 0.06 0.09 Matches are distributed among these distances: 20 17 0.61 21 11 0.39 ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69 Consensus pattern (20 bp): CCTTTTTTTTCCTTTCTTTC Found at i:51154658 original size:27 final size:27 Alignment explanation

Indices: 51154621--51154709 Score: 90 Period size: 27 Copynumber: 3.3 Consensus size: 27 51154611 ATGAAATGCT * 51154621 CTGAAGAGCCACTATCACCGAATTGCA 1 CTGAAGTGCCACTATCACCGAATTGCA * * * * 51154648 TTGAGGTGCCACTATCACTGAGTTGCA 1 CTGAAGTGCCACTATCACCGAATTGCA * * * 51154675 CTGAAGTGCCACAATC-GCTAATTTGCA 1 CTGAAGTGCCACTATCACCGAA-TTGCA 51154702 CTGAAGTG 1 CTGAAGTG 51154710 TCGTCGTCAC Statistics Matches: 49, Mismatches: 12, Indels: 2 0.78 0.19 0.03 Matches are distributed among these distances: 26 1 0.02 27 48 0.98 ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25 Consensus pattern (27 bp): CTGAAGTGCCACTATCACCGAATTGCA Found at i:51155403 original size:112 final size:112 Alignment explanation

Indices: 51155206--51155436 Score: 399 Period size: 112 Copynumber: 2.1 Consensus size: 112 51155196 TTCCCATATT * ** 51155206 TGTTGGAAAACTCACTGGAGGCGACGAACCGATGACGATTGGCCACCAGAGGCGGGAACAAAGAG 1 TGTTGGAAAACTCACTAGAGGCGACGAACCGATGACGAACGGCCACCAGAGGCGGGAACAAAGAG * * 51155271 GCGCTTGATTTTCTTGCTAAGGAATTTAAACATGGTTGATAAACGGG 66 ACGCATGATTTTCTTGCTAAGGAATTTAAACATGGTTGATAAACGGG 51155318 TGTTGGAAAACTCACTAGAGGCGACGAACCGATGACGAACGGCCACCAGAGGCGGGAACAAAGAG 1 TGTTGGAAAACTCACTAGAGGCGACGAACCGATGACGAACGGCCACCAGAGGCGGGAACAAAGAG * 51155383 ACGCATGATTTTCTTGCTAAGGAATTTAAACATGGTTGATAAGCGGG 66 ACGCATGATTTTCTTGCTAAGGAATTTAAACATGGTTGATAAACGGG * 51155430 CGTTGGA 1 TGTTGGA 51155437 CAAAATGGGT Statistics Matches: 112, Mismatches: 7, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 112 112 1.00 ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20 Consensus pattern (112 bp): TGTTGGAAAACTCACTAGAGGCGACGAACCGATGACGAACGGCCACCAGAGGCGGGAACAAAGAG ACGCATGATTTTCTTGCTAAGGAATTTAAACATGGTTGATAAACGGG Found at i:51156086 original size:17 final size:16 Alignment explanation

Indices: 51156060--51156098 Score: 51 Period size: 16 Copynumber: 2.4 Consensus size: 16 51156050 GTATATAATA * 51156060 TTAATTTTTTATACTTT 1 TTAATATTTTA-ACTTT * 51156077 TTAATATTTTAATTTT 1 TTAATATTTTAACTTT 51156093 TTAATA 1 TTAATA 51156099 AATATTATAT Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 16 10 0.50 17 10 0.50 ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67 Consensus pattern (16 bp): TTAATATTTTAACTTT Found at i:51158892 original size:46 final size:44 Alignment explanation

Indices: 51158788--51158895 Score: 144 Period size: 44 Copynumber: 2.4 Consensus size: 44 51158778 TGTCTTTGAC ** * * * 51158788 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT 1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT * 51158832 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT 1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT 51158878 ATGGACTTACATGGCTCA 1 ATGGACTTACATGGCTCA 51158896 TTTCGTTCTG Statistics Matches: 56, Mismatches: 6, Indels: 2 0.88 0.09 0.03 Matches are distributed among these distances: 44 33 0.59 46 23 0.41 ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33 Consensus pattern (44 bp): ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT Found at i:51161491 original size:255 final size:255 Alignment explanation

Indices: 51161040--51161501 Score: 879 Period size: 255 Copynumber: 1.8 Consensus size: 255 51161030 GCCAGAACCG * 51161040 ATGTAGAATATAAACGTCGTGTGCCATACCCCAACGCGACAAGGAAAGACCGCTCAGATGAACAA 1 ATGTAGAATATAAACCTCGTGTGCCATACCCCAACGCGACAAGGAAAGACCGCTCAGATGAACAA 51161105 TTTGGTAAATTCCTTAAACTCTTAAAAAAATTACATATTAACTTACCATTTATTGAAGCTCTGTC 66 TTTGGTAAATTCCTTAAACTCTTAAAAAAATTACATATTAACTTACCATTTATTGAAGCTCTGTC * 51161170 ACAGATGCCAAACGCAATAAAATTTTTAAAGGAGCTTTTAGCAAATAAGTGGAAGTTGGACGAGG 131 ACAGATGCCAAACGCAATAAAATTTTTAAAGGAGCTTTTAGCAAATAAGCGGAAGTTGGACGAGG * 51161235 CGTTGCATGTGGTGAGCAGAGGTCAAGGTGAGGAAGGTCATAATAAAAACAAATCGGTGA 196 CGTTGCACGTGGTGAGCAGAGGTCAAGGTGAGGAAGGTCATAATAAAAACAAATCGGTGA * 51161295 ATGTAGAATATAAACCTCGTGTGCCATACCCCAACGCGACAATGAAAGACCGCTCAGATGAACAA 1 ATGTAGAATATAAACCTCGTGTGCCATACCCCAACGCGACAAGGAAAGACCGCTCAGATGAACAA * 51161360 TTTGGTAAATTCCTTAAACTCTTAAAAAAATTACATATTAACTTACCGTTTATTGAAGCTCTGTC 66 TTTGGTAAATTCCTTAAACTCTTAAAAAAATTACATATTAACTTACCATTTATTGAAGCTCTGTC 51161425 ACAGATGCCAAACGCAATAAAATTTTTAAAGGAGCTTTTAGCAAATAAGCGGAAGTTGGACGAGG 131 ACAGATGCCAAACGCAATAAAATTTTTAAAGGAGCTTTTAGCAAATAAGCGGAAGTTGGACGAGG 51161490 CGTTGCACGTGG 196 CGTTGCACGTGG 51161502 AGCTAAACGC Statistics Matches: 202, Mismatches: 5, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 255 202 1.00 ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25 Consensus pattern (255 bp): ATGTAGAATATAAACCTCGTGTGCCATACCCCAACGCGACAAGGAAAGACCGCTCAGATGAACAA TTTGGTAAATTCCTTAAACTCTTAAAAAAATTACATATTAACTTACCATTTATTGAAGCTCTGTC ACAGATGCCAAACGCAATAAAATTTTTAAAGGAGCTTTTAGCAAATAAGCGGAAGTTGGACGAGG CGTTGCACGTGGTGAGCAGAGGTCAAGGTGAGGAAGGTCATAATAAAAACAAATCGGTGA Found at i:51162725 original size:55 final size:55 Alignment explanation

Indices: 51162657--51162760 Score: 127 Period size: 55 Copynumber: 1.9 Consensus size: 55 51162647 GTGCGACATG * * 51162657 ACCGTGGGCGAACCTGCCAAAATAACACAGGCGTTTGACACGCCCGTGTGGAAGA 1 ACCGTGGGCGAACCTGCCAAAATAACACAGGCATGTGACACGCCCGTGTGGAAGA ** ** * * * 51162712 ACCGTGGTTGAACCTGTTAAAATAGCACGGGCATGTGCCACGCCCGTGT 1 ACCGTGGGCGAACCTGCCAAAATAACACAGGCATGTGACACGCCCGTGT 51162761 TTAGCACCAT Statistics Matches: 40, Mismatches: 9, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 55 40 1.00 ACGTcount: A:0.26, C:0.27, G:0.29, T:0.18 Consensus pattern (55 bp): ACCGTGGGCGAACCTGCCAAAATAACACAGGCATGTGACACGCCCGTGTGGAAGA Found at i:51166286 original size:2 final size:2 Alignment explanation

Indices: 51166273--51166304 Score: 55 Period size: 2 Copynumber: 16.0 Consensus size: 2 51166263 GAGGAAGAAA * 51166273 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 51166305 GAATGACTTG Statistics Matches: 28, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47 Consensus pattern (2 bp): AT Found at i:51166824 original size:21 final size:21 Alignment explanation

Indices: 51166799--51166902 Score: 78 Period size: 20 Copynumber: 5.2 Consensus size: 21 51166789 TAGCCTTTGG 51166799 GCTTCCGTTTAGCACTTGTGT 1 GCTTCCGTTTAGCACTTGTGT * *** 51166820 GCTTCAG-TTAGC-CTT-CAC 1 GCTTCCGTTTAGCACTTGTGT 51166838 GCTTCCGTTTAGCACTTGTGT 1 GCTTCCGTTTAGCACTTGTGT ** 51166859 GCTTTAG-TTAGC-CTTCG-G- 1 GCTTCCGTTTAGCACTT-GTGT * * 51166877 GCTTCCATTTAGCACTTATGT 1 GCTTCCGTTTAGCACTTGTGT 51166898 GCTTC 1 GCTTC 51166903 AGCTAGACTT Statistics Matches: 61, Mismatches: 14, Indels: 16 0.67 0.15 0.18 Matches are distributed among these distances: 18 10 0.16 19 17 0.28 20 18 0.30 21 16 0.26 ACGTcount: A:0.12, C:0.26, G:0.21, T:0.40 Consensus pattern (21 bp): GCTTCCGTTTAGCACTTGTGT Found at i:51166824 original size:39 final size:39 Alignment explanation

Indices: 51166781--51166920 Score: 208 Period size: 39 Copynumber: 3.6 Consensus size: 39 51166771 GCTCTGATAA * 51166781 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTGTGT 1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT ** 51166820 GCTTCAGTTAGCCTTCACGCTTCCGTTTAGCACTTGTGT 1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT * * * 51166859 GCTTTAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT 1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT * * 51166898 GCTTCAGCTAGACTTCGGGCTTC 1 GCTTCAGTTAGCCTTCGGGCTTC 51166921 AGATTACGAT Statistics Matches: 90, Mismatches: 11, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 39 90 1.00 ACGTcount: A:0.13, C:0.26, G:0.23, T:0.39 Consensus pattern (39 bp): GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT Found at i:51171263 original size:985 final size:982 Alignment explanation

Indices: 51169333--51171294 Score: 2932 Period size: 985 Copynumber: 2.0 Consensus size: 982 51169323 TGGGGGTATT * 51169333 TGATAAACAGTAATTTATACATATTTTTACCCCATACTTAACGCATTTTATGGATGATTTTTCCT 1 TGATAAACAGTAATTTATACATATTTTTAACCCATACTTAACGCATTTTATGGATGATTTTTCCT * * 51169398 TAGAATTGGTGAATTCGATGCTCCTAATGCCTTAATTTCATGTTTTATACTTAAATGAGCATAAG 66 CAGAATTGGTGAATTCGATGCTCCTAATGCCTTAATTTCATGATTTATACTTAAATGAGCATAAG * ** ** 51169463 AGAGCGAAATGAACGAGAAACGGGCCAAAAATGGAGAAAATGGACCAACGTACGAAATCAACACG 131 AGAGCGAAAGGAACGAGAAACGGGCCAAAAACAGAGAAAATGGACCAAAATACGAAATCAACACG * * * 51169528 GCCTGGACTTCCTCACACGGGCAGACCACACGGCCGTGTCAAATTGGCAGAATCGAAGCACGACT 196 GCCTAGACTTCCTCACACAGGCAGACCACACGGCCGTGTCAAATTGGCAGAATCGAAGCACGACC * * * * * 51169593 CACACGGGTGGACCACACGCCCGTGCCATTCTAATAGGCTCGAGCACGGCCTGAAGTAATTGCAC 261 CACACGGGTAGAACACACGCCCGTGCCATTCTAACAGACTCGAACACGGCCTGAAGTAATT---- * * * 51169658 ACAGCCGTGTGACACGGCCGTGTCTCTGCCGAGCCCAAGTTGAGTCCAATTAGAAAAAGGATAAT 322 ACAGCC----GACACGGCCGTGTCCCTACCGAGCCCAAGTTGAGTCCAATTAGAAAAAGGACAAT ** * * 51169723 TTTGAGGGCTTTTAGGCATTCTAAAGCCTATAAATACACCCTGAAGGAAGAGGAAGAAACATACA 383 TTTGAGGGCTCGTAGGCATTCCAAAGCCTATAAATACACCCTGAAGGAAGAGG-AGAAACACACA * * * * * * ** 51169788 GGGAGGAATAAAGGAATTACTCGAAGAAAGCTGATTGATTCATCTTAGAAGCCGGATTCATCATC 447 GGGAGGAAGAAAGAAATTACTCGAAGAAAGCCGACTGATCCATCTCAGAAGCCAAATTCATCATC * 51169853 AAGACTGAAGATCTCCCCTCAATTTCCTTTCAAGAGTTTTGGGTTTTCTTTATGTTTTGTATTCA 512 AAGACTGAAGATCTCCCCTCAATTTCCCTTCAAGAGTTTTGGGTTTTCTTTATGTTTTGTATTCA * * 51169918 TTATTTTTCTGAGATGTTTTCCTTTTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAATG 577 TTATTCTTCTGAGATGTTTTCCTCTTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAATG * 51169983 AAACCTAAGACGAATCTTGTTATTATTTTCTGAATTGTATAATAAATATTTGACTTGTTATTAAT 642 AAACCTAAGACGAATCTTGTTATTATTTTCTGAATTGTATAATAAATATTTAACTTGTTATTAAT * * 51170048 TATGTGTTCTTAATTCTTGTTTTGATATTCTAGGATATTGATTCAAGTTAAGCTCTTATTCAGAG 707 TATGTGTTCTTAATTCTTGTTTTGATATCCTAGGATATTGATTCAAGATAAGCTCTTATTCAGAG * * * * * * 51170113 GAGGAATAGACCCTGTCTAAGAGTACAATTGTTATAATTAAGTGAAGTTGATTGCATGCCTAAAG 772 GAGGAACAGACCCTGTCTAAGAGTACAATTATCATAATTAAGCGAAGTTGATTGCACGCCGAAAG * * * 51170178 ATAGGGTGATAAGATTTTGTCAGATTAGGGTAAAACCTAATAAGGGGATCCATAGATCGAGTTAA 837 ATAGGGTGACAAGATTTTGCCAGATTAGGGTAAAACCTAATAAGGGGATCAATAGATCGAGTTAA * * 51170243 TGCAACCCTAGGGTGTTAATTGGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACGTTATTA 902 TGCAACCCTAGGGTGTTAATTAGAGAAAAGTCTCAATTATTCAACCTAGGGATTAGACGTTATTA 51170308 GTATTGAATAAGGATA 967 GTATTGAATAAGGATA * * * * 51170324 TGATAAACCGTAATTTATACATATTTTTAACCCATGCTTAACGTATTTTTTGGATGATTTTTCCT 1 TGATAAACAGTAATTTATACATATTTTTAACCCATACTTAACGCATTTTATGGATGATTTTTCCT * * * * 51170389 CAGAATTGGTGGATTCGATGGTCCTAATGCCTTAATTTCATGATTTATACTTAAGTGAGCATAGG 66 CAGAATTGGTGAATTCGATGCTCCTAATGCCTTAATTTCATGATTTATACTTAAATGAGCATAAG * * * 51170454 AGAGCGAAAGGAACGAGAAATGGGCCAAAAACAGAGAAAATGGGCCAAAATACGAAATTAACACG 131 AGAGCGAAAGGAACGAGAAACGGGCCAAAAACAGAGAAAATGGACCAAAATACGAAATCAACACG * * * * * 51170519 GCCTAGACTTCCTCATATAGGCA-TCTCACACGGTCGTGTCAATTTGGCAGAATCGAAGCACGAC 196 GCCTAGACTTCCTCACACAGGCAGAC-CACACGGCCGTGTCAAATTGGCAGAATCGAAGCACGAC * 51170583 CCACACGGGTAGAACACACGCCCGTGCCATTCTAACATACTCGAACACGGCCTGAAGTAA-T-C- 260 CCACACGGGTAGAACACACGCCCGTGCCATTCTAACAGACTCGAACACGGCCTGAAGTAATTACA * * * * * 51170645 G-C-ACACGGGCGTGTCCCTACCGAGCCCAAGTTGAGTCTAATTCAG-AAAATGCCACTTTTGAG 325 GCCGACACGGCCGTGTCCCTACCGAGCCCAAGTTGAGTCCAATT-AGAAAAAGGACAATTTTGAG * * 51170707 GGCTCGTAGGCATTCCAAAGCCTATAAATACACCCTAGAGGAGGAAGAAAGG-GGAACACAGAGG 389 GGCTCGTAGGCATTCCAAAGCCTATAAATACACCCT-GA--AGGAAG--AGGAGAAACACACAGG * 51170771 AAGAAGGGAAGGAAGAAATTACTCGAAGAAAGCCGACTGATCCATCTCAGAAGCCAAATTCATCA 449 --G-A-GGAAGAAAGAAATTACTCGAAGAAAGCCGACTGATCCATCTCAGAAGCCAAATTCATCA * 51170836 TCAAGACTGAAGATCTCCCCTCAATTTCCCTTCAGGAGTTTTGGGTTTTCTTTATGTTTTGTATT 510 TCAAGACTGAAGATCTCCCCTCAATTTCCCTTCAAGAGTTTTGGGTTTTCTTTATGTTTTGTATT * 51170901 CATTATTCTTCTGAGATGTTTTCCTCTTTAGTTATGAACTAAATCCCCTAAATACCTAAGGGGAA 575 CATTATTCTTCTGAGATGTTTTCCTCTTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAA * * 51170966 TGAAACCTAAGACGAATCTTGTTATTATTTTCTGAATTGTATGATAAATATTTAACTTGTTCTTA 640 TGAAACCTAAGACGAATCTTGTTATTATTTTCTGAATTGTATAATAAATATTTAACTTGTTATTA 51171031 ATTATGTGTTCTTAATTCTTGTTTTGATATCCTAGGATATTGATTCAAGATAAGCTCTTATTCAG 705 ATTATGTGTTCTTAATTCTTGTTTTGATATCCTAGGATATTGATTCAAGATAAGCTCTTATTCAG * * * * 51171096 AGGAGGAACAGACCCTGTCTAAGAGTACATTTATCATAATTAAGCGGAGTTGATTGCGCGCCGAG 770 AGGAGGAACAGACCCTGTCTAAGAGTACAATTATCATAATTAAGCGAAGTTGATTGCACGCCGAA * * 51171161 AGATAGGGTGACAAGATTTTGCCGGATTAGGGTGAAACCTAATAAGGGGATCAATAGATCGAGTT 835 AGATAGGGTGACAAGATTTTGCCAGATTAGGGTAAAACCTAATAAGGGGATCAATAGATCGAGTT * 51171226 AATGCAACCCTAGGGTGTTAATTAGAGAAAGGTCTCAATTATTCAACCTAGGGATTAGACGTTAT 900 AATGCAACCCTAGGGTGTTAATTAGAGAAAAGTCTCAATTATTCAACCTAGGGATTAGACGTTAT 51171291 TAGT 965 TAGT 51171295 CTTAAATAGA Statistics Matches: 876, Mismatches: 84, Indels: 28 0.89 0.09 0.03 Matches are distributed among these distances: 978 82 0.09 979 4 0.00 981 15 0.02 983 5 0.01 984 2 0.00 985 482 0.55 990 2 0.00 991 284 0.32 ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30 Consensus pattern (982 bp): TGATAAACAGTAATTTATACATATTTTTAACCCATACTTAACGCATTTTATGGATGATTTTTCCT CAGAATTGGTGAATTCGATGCTCCTAATGCCTTAATTTCATGATTTATACTTAAATGAGCATAAG AGAGCGAAAGGAACGAGAAACGGGCCAAAAACAGAGAAAATGGACCAAAATACGAAATCAACACG GCCTAGACTTCCTCACACAGGCAGACCACACGGCCGTGTCAAATTGGCAGAATCGAAGCACGACC CACACGGGTAGAACACACGCCCGTGCCATTCTAACAGACTCGAACACGGCCTGAAGTAATTACAG CCGACACGGCCGTGTCCCTACCGAGCCCAAGTTGAGTCCAATTAGAAAAAGGACAATTTTGAGGG CTCGTAGGCATTCCAAAGCCTATAAATACACCCTGAAGGAAGAGGAGAAACACACAGGGAGGAAG AAAGAAATTACTCGAAGAAAGCCGACTGATCCATCTCAGAAGCCAAATTCATCATCAAGACTGAA GATCTCCCCTCAATTTCCCTTCAAGAGTTTTGGGTTTTCTTTATGTTTTGTATTCATTATTCTTC TGAGATGTTTTCCTCTTTAGTTATGAACTAAATCCCCTAAATACCTAAAGGGAATGAAACCTAAG ACGAATCTTGTTATTATTTTCTGAATTGTATAATAAATATTTAACTTGTTATTAATTATGTGTTC TTAATTCTTGTTTTGATATCCTAGGATATTGATTCAAGATAAGCTCTTATTCAGAGGAGGAACAG ACCCTGTCTAAGAGTACAATTATCATAATTAAGCGAAGTTGATTGCACGCCGAAAGATAGGGTGA CAAGATTTTGCCAGATTAGGGTAAAACCTAATAAGGGGATCAATAGATCGAGTTAATGCAACCCT AGGGTGTTAATTAGAGAAAAGTCTCAATTATTCAACCTAGGGATTAGACGTTATTAGTATTGAAT AAGGATA Found at i:51172030 original size:393 final size:393 Alignment explanation

Indices: 51171305--51172072 Score: 1238 Period size: 393 Copynumber: 2.0 Consensus size: 393 51171295 CTTAAATAGA * 51171305 GATAATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCGTCCGATTCAGAGC 1 GATAATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCATCCGATTCAGAGC * * * 51171370 CAGAATAACAAGTAAAAATCTAGGTGGATTTTTTCTTAGGTATTGTCTTAATTCAATTGTTTTCC 66 CAGAATAACAAGTAAAAATCTAGGTGGATTCTTCCTTAGGTATTGTCTTAATTCAATCGTTTTCC * * 51171435 AAAAGTAATCCCCCAATTCTGCTTTCTGTGAGTTCTTAGTTTAGATAATTAGTTAGTTAAAACAA 131 AAAAGTAATCCCCCAATTCTACTTTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAA * * * 51171500 AACCCCATTTATTCTTAGGCTAGATAATAAAAAGACGGTCATTACTAGTACTTTTAGTTCCTTTG 196 AACCCCATTTATTCTTAGGCTAGATAATAAAAAAACAGTCATTACTAGTACTTTTAGTTCCTTTA * * 51171565 GGTTCGACAATCCGGTCTTACTAAAACTATACTACTGTTCGATAGGTACACTTGCCTACATCGCG 261 GGTTCGACAATCCGGTATTACTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCG 51171630 ATAATAGTTAGTTTCAAGAACGATTAATTATAAATATT-TAAAACCTATCATACGAGAATCGCGA 326 ATAATAGTTAGTTTCAAGAACGATTAATTATAAAT-TTATAAAACCTATCATACGAGAATCGCGA 51171694 TCAG 390 TCAG * * 51171698 GATAATAACATAACTTAGGGATCTCTACGGAGCAAGTTAAATGAATAAATCATCCGATTCAGAGT 1 GATAATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCATCCGATTCAGAGC * * * * 51171763 CAGAATAATAAGT-GAAGTCTAGGTGGATTCTTCCTTAGGTATTGTCTTACTTCAATCGTTTTTC 66 CAGAATAACAAGTAAAAATCTAGGTGGATTCTTCCTTAGGTATTGTCTTAATTCAATCG-TTTT- * * 51171827 CCAAAAGTAATTCCCCAATTCTATTTTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAAC 129 CCAAAAGTAATCCCCCAATTCTACTTTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAAC * 51171892 AAAGCCCC-TTTATTCTTAGGCTAGATAATAAAAAAACAGTCATTACTAGTACTTTTAGTTCCTT 194 AAAACCCCATTTATTCTTAGGCTAGATAATAAAAAAACAGTCATTACTAGTACTTTTAGTTCCTT * * * ** 51171956 TAGGTTTGATAATCCGTTATTGTTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCG 259 TAGGTTCGACAATCCGGTATTACTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCG * 51172021 CTG-TAATAGTTAGTTTCAAGAACGATTAATTATAAATTTATAAAACTTATCA 324 C-GATAATAGTTAGTTTCAAGAACGATTAATTATAAATTTATAAAACCTATCA 51172073 CATAAAATCG Statistics Matches: 345, Mismatches: 26, Indels: 8 0.91 0.07 0.02 Matches are distributed among these distances: 392 41 0.12 393 235 0.68 394 69 0.20 ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35 Consensus pattern (393 bp): GATAATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAATAAATCATCCGATTCAGAGC CAGAATAACAAGTAAAAATCTAGGTGGATTCTTCCTTAGGTATTGTCTTAATTCAATCGTTTTCC AAAAGTAATCCCCCAATTCTACTTTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAA AACCCCATTTATTCTTAGGCTAGATAATAAAAAAACAGTCATTACTAGTACTTTTAGTTCCTTTA GGTTCGACAATCCGGTATTACTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCG ATAATAGTTAGTTTCAAGAACGATTAATTATAAATTTATAAAACCTATCATACGAGAATCGCGAT CAG Found at i:51172201 original size:54 final size:54 Alignment explanation

Indices: 51172126--51172320 Score: 209 Period size: 54 Copynumber: 3.6 Consensus size: 54 51172116 TTGGTAAGAT * * * * 51172126 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC 1 AAGGAAATCATGTAAGACCATGCCAAGACATGGAATTGATGAGTTCTATAAGGC * * 51172180 AAGGAAATCATGTAAGACCATGTCAAGACATGGTATTGATGAGTTACTATAAGG- 1 AAGGAAATCATGTAAGACCATGCCAAGACATGGAATTGATGAGTT-CTATAAGGC * * * 51172234 AA--AATGTCCTATGTAAGACCATGCCAAGGCATGGAATTGATGAGTT-TATAAAGC 1 AAGGAA-AT-C-ATGTAAGACCATGCCAAGACATGGAATTGATGAGTTCTATAAGGC * * * * 51172288 AAGGATACCACGTAAGACCATGTCAAGACATGG 1 AAGGAAATCATGTAAGACCATGCCAAGACATGG 51172321 TAATGCTAAG Statistics Matches: 118, Mismatches: 16, Indels: 15 0.79 0.11 0.10 Matches are distributed among these distances: 52 2 0.02 53 28 0.24 54 46 0.39 55 41 0.35 56 1 0.01 ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24 Consensus pattern (54 bp): AAGGAAATCATGTAAGACCATGCCAAGACATGGAATTGATGAGTTCTATAAGGC Found at i:51176429 original size:22 final size:25 Alignment explanation

Indices: 51176403--51176457 Score: 64 Period size: 25 Copynumber: 2.3 Consensus size: 25 51176393 TTTATAAATT 51176403 TAATTTAAAAG-ATA-TAAT-ACAA 1 TAATTTAAAAGCATATTAATAACAA * 51176425 TAATTT-CAAGCATATTTAATAACAA 1 TAATTTAAAAGCATA-TTAATAACAA 51176450 TAATTTAA 1 TAATTTAA 51176458 TCATCAAAAT Statistics Matches: 26, Mismatches: 2, Indels: 6 0.76 0.06 0.18 Matches are distributed among these distances: 21 3 0.12 22 9 0.35 24 4 0.15 25 10 0.38 ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36 Consensus pattern (25 bp): TAATTTAAAAGCATATTAATAACAA Found at i:51184635 original size:23 final size:23 Alignment explanation

Indices: 51184603--51184646 Score: 70 Period size: 23 Copynumber: 1.9 Consensus size: 23 51184593 AATGTCCAAA 51184603 ATTTTCGTAACTCATTATTTATT 1 ATTTTCGTAACTCATTATTTATT * * 51184626 ATTTTTGTAACTCATTCTTTA 1 ATTTTCGTAACTCATTATTTA 51184647 GGGACCTCAA Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 23 19 1.00 ACGTcount: A:0.25, C:0.14, G:0.05, T:0.57 Consensus pattern (23 bp): ATTTTCGTAACTCATTATTTATT Found at i:51185131 original size:11 final size:11 Alignment explanation

Indices: 51185115--51185141 Score: 54 Period size: 11 Copynumber: 2.5 Consensus size: 11 51185105 GATTAATAAC 51185115 TTAATTAATAT 1 TTAATTAATAT 51185126 TTAATTAATAT 1 TTAATTAATAT 51185137 TTAAT 1 TTAAT 51185142 GAATGGACAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (11 bp): TTAATTAATAT Found at i:51185967 original size:25 final size:25 Alignment explanation

Indices: 51185939--51185987 Score: 64 Period size: 25 Copynumber: 2.0 Consensus size: 25 51185929 TCGATTTATG 51185939 TTCATATT-GGGTTTTGGCTTGGGGT 1 TTCA-ATTCGGGTTTTGGCTTGGGGT * * 51185964 TTCAATTCTGGTTTTGGTTTGGGG 1 TTCAATTCGGGTTTTGGCTTGGGG 51185988 GTTTGATTTC Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 24 3 0.14 25 18 0.86 ACGTcount: A:0.08, C:0.08, G:0.35, T:0.49 Consensus pattern (25 bp): TTCAATTCGGGTTTTGGCTTGGGGT Found at i:51186033 original size:7 final size:7 Alignment explanation

Indices: 51186023--51186126 Score: 55 Period size: 7 Copynumber: 13.6 Consensus size: 7 51186013 GTTTGGTGTT * 51186023 GGTTTAG 1 GGTTTAA 51186030 GGTTTTAA 1 GG-TTTAA 51186038 GGTTTAA 1 GGTTTAA 51186045 GGTTGTTAA 1 GG-T-TTAA 51186054 GGGTTTTAA 1 -GG-TTTAA * * 51186063 AGTTTAG 1 GGTTTAA 51186070 GGTTTAA 1 GGTTTAA * 51186077 AGTTTAA 1 GGTTTAA * 51186084 GGTTGTTAGG 1 GG-T-TTA-A 51186094 GGTTTTAA 1 GG-TTTAA * 51186102 AGTTTAA 1 GGTTTAA * 51186109 GGCTTAA 1 GGTTTAA * 51186116 AGTTTAA 1 GGTTTAA 51186123 GGTT 1 GGTT 51186127 GTTAGGGGTT Statistics Matches: 75, Mismatches: 15, Indels: 14 0.72 0.14 0.13 Matches are distributed among these distances: 7 43 0.57 8 10 0.13 9 14 0.19 10 8 0.11 ACGTcount: A:0.26, C:0.01, G:0.30, T:0.43 Consensus pattern (7 bp): GGTTTAA Found at i:51186043 original size:15 final size:15 Alignment explanation

Indices: 51186023--51186224 Score: 66 Period size: 15 Copynumber: 13.7 Consensus size: 15 51186013 GTTTGGTGTT 51186023 GGTTTAGGGTTTTAA 1 GGTTTAGGGTTTTAA * 51186038 GGTTTAAGG--TT-- 1 GGTTTAGGGTTTTAA * 51186049 -GTTAAGGGTTTTAA 1 GGTTTAGGGTTTTAA * 51186063 AGTTTAGGG-TTTAA 1 GGTTTAGGGTTTTAA * * * 51186077 AGTTTAAGGTTGTTAGG 1 GGTTTAGGGTT-TTA-A ** 51186094 GGTTTTAAAG-TTTAA 1 GG-TTTAGGGTTTTAA * ** 51186109 GGCTTAAAG-TTTAA 1 GGTTTAGGGTTTTAA * 51186123 GGTTGTTAGGGGTTTTAG 1 GG-T-TTA-GGGTTTTAA * 51186141 GGTTTAGGG-TTTAG 1 GGTTTAGGGTTTTAA * * 51186155 GGTTAAGGG--CTAA 1 GGTTTAGGGTTTTAA * * 51186168 GGGTTAAGGGTTTTAG 1 -GGTTTAGGGTTTTAA * * 51186184 GGTTAAGGGTTTTAG 1 GGTTTAGGGTTTTAA * * 51186199 GGTTAAGGGTTTTAG 1 GGTTTAGGGTTTTAA * 51186214 GGTTTGGGGTT 1 GGTTTAGGGTT 51186225 AGGGCTTGGG Statistics Matches: 150, Mismatches: 21, Indels: 32 0.74 0.10 0.16 Matches are distributed among these distances: 10 6 0.04 12 2 0.01 13 4 0.03 14 48 0.32 15 60 0.40 16 14 0.09 17 4 0.03 18 12 0.08 ACGTcount: A:0.22, C:0.01, G:0.36, T:0.41 Consensus pattern (15 bp): GGTTTAGGGTTTTAA Found at i:51186055 original size:16 final size:15 Alignment explanation

Indices: 51186023--51186158 Score: 62 Period size: 14 Copynumber: 8.7 Consensus size: 15 51186013 GTTTGGTGTT * 51186023 GGTTTAGGGTTTTAA 1 GGTTTAAGGTTTTAA 51186038 GGTTTAAGGTTGTTAA 1 GGTTTAAGGTT-TTAA * * 51186054 GGGTTTTAAAG-TTTAG 1 -GG-TTTAAGGTTTTAA * 51186070 GGTTTAAAG-TTTAA 1 GGTTTAAGGTTTTAA * 51186084 GGTTGTTAGGGGTTTTAA 1 GG-T-TTA-AGGTTTTAA * * 51186102 AGTTTAAGG-CTTAA 1 GGTTTAAGGTTTTAA * * 51186116 AGTTTAAGGTTGTTAGG 1 GGTTTAAGGTT-TTA-A * * * 51186133 GGTTTTAGGGTTTAG 1 GGTTTAAGGTTTTAA * 51186148 GGTTTAGGGTT 1 GGTTTAAGGTT 51186159 AAGGGCTAAG Statistics Matches: 94, Mismatches: 17, Indels: 20 0.72 0.13 0.15 Matches are distributed among these distances: 14 26 0.28 15 24 0.26 16 19 0.20 17 13 0.14 18 12 0.13 ACGTcount: A:0.23, C:0.01, G:0.33, T:0.43 Consensus pattern (15 bp): GGTTTAAGGTTTTAA Found at i:51186083 original size:39 final size:39 Alignment explanation

Indices: 51186024--51186153 Score: 197 Period size: 39 Copynumber: 3.3 Consensus size: 39 51186014 TTTGGTGTTG * * 51186024 GTTTAGGGTTTTAAGGTTTAAGGTTGTTAAGGGTTTTAAA 1 GTTTAGGG-TTTAAAGTTTAAGGTTGTTAGGGGTTTTAAA 51186064 GTTTAGGGTTTAAAGTTTAAGGTTGTTAGGGGTTTTAAA 1 GTTTAGGGTTTAAAGTTTAAGGTTGTTAGGGGTTTTAAA * * ** 51186103 GTTTAAGGCTTAAAGTTTAAGGTTGTTAGGGGTTTTAGG 1 GTTTAGGGTTTAAAGTTTAAGGTTGTTAGGGGTTTTAAA 51186142 GTTTAGGGTTTA 1 GTTTAGGGTTTA 51186154 GGGTTAAGGG Statistics Matches: 82, Mismatches: 8, Indels: 1 0.90 0.09 0.01 Matches are distributed among these distances: 39 74 0.90 40 8 0.10 ACGTcount: A:0.24, C:0.01, G:0.32, T:0.44 Consensus pattern (39 bp): GTTTAGGGTTTAAAGTTTAAGGTTGTTAGGGGTTTTAAA Found at i:51186616 original size:7 final size:7 Alignment explanation

Indices: 51186136--51186614 Score: 270 Period size: 7 Copynumber: 67.0 Consensus size: 7 51186126 TGTTAGGGGT 51186136 TTTAGGG 1 TTTAGGG 51186143 TTTAGGG 1 TTTAGGG 51186150 TTTAGGG 1 TTTAGGG * 51186157 TTAAGGG 1 TTTAGGG * * 51186164 CTAAGGG 1 TTTAGGG * 51186171 TTAAGGG 1 TTTAGGG 51186178 TTTTAGGG 1 -TTTAGGG * 51186186 TTAAGGG 1 TTTAGGG 51186193 TTTTAGGG 1 -TTTAGGG * 51186201 TTAAGGG 1 TTTAGGG 51186208 TTTTAGGG 1 -TTTAGGG 51186216 TTT-GGG 1 TTTAGGG * 51186222 GTTAGGG 1 TTTAGGG * * 51186229 CTTGGGG 1 TTTAGGG * * 51186236 CTTGGGG 1 TTTAGGG * * 51186243 CTTGGGG 1 TTTAGGG * * 51186250 CTTGGGG 1 TTTAGGG * * 51186257 CTTGGGG 1 TTTAGGG * * 51186264 CTTGGGG 1 TTTAGGG * * 51186271 CTTGGGG 1 TTTAGGG * * 51186278 CTTGGGG 1 TTTAGGG * * 51186285 CTTGGGG 1 TTTAGGG * * 51186292 CTTGGGG 1 TTTAGGG * * 51186299 CTTGGGG 1 TTTAGGG * 51186306 CTT-GGG 1 TTTAGGG * 51186312 TTTGGGGG 1 TTT-AGGG * 51186320 TTTGGGG 1 TTTAGGG * 51186327 TTTGGGGG 1 TTT-AGGG 51186335 TTTAGGG 1 TTTAGGG 51186342 TTTAGGG 1 TTTAGGG * 51186349 TTTTGGGG 1 -TTTAGGG 51186357 TTTAGGG 1 TTTAGGG 51186364 TTTAGGG 1 TTTAGGG 51186371 TTTAGGG 1 TTTAGGG * 51186378 TTTTGGGG 1 -TTTAGGG * * 51186386 TCTGGGG 1 TTTAGGG * * 51186393 TCTGGGG 1 TTTAGGG * 51186400 TTTGGGG 1 TTTAGGG * * 51186407 TCTGGGG 1 TTTAGGG 51186414 TTTTAGGG 1 -TTTAGGG * * 51186422 TATGGGG 1 TTTAGGG 51186429 TTTTA-GG 1 -TTTAGGG * * 51186436 TCTGGGG 1 TTTAGGG 51186443 TTTTAGGG 1 -TTTAGGG * 51186451 TCTAGGG 1 TTTAGGG 51186458 TTTAGGG 1 TTTAGGG * 51186465 TTCAGGG 1 TTTAGGG 51186472 TTTAGGG 1 TTTAGGG 51186479 TTTTAGGG 1 -TTTAGGG 51186487 TTTTAGGG 1 -TTTAGGG 51186495 TTTAGGG 1 TTTAGGG * 51186502 TTTAGTG 1 TTTAGGG 51186509 TTT-GGG 1 TTTAGGG 51186515 TTTTAGGG 1 -TTTAGGG 51186523 TTTTAGGG 1 -TTTAGGG 51186531 TTTAGGG 1 TTTAGGG * 51186538 TTTGGGG 1 TTTAGGG 51186545 TTT-GGAG 1 TTTAGG-G 51186552 TTT-GGG 1 TTTAGGG * 51186558 GTTAGGG 1 TTTAGGG 51186565 TTTAGGGG 1 TTTA-GGG 51186573 TTTAGGGG 1 TTTA-GGG 51186581 TTTAGGG 1 TTTAGGG 51186588 -TTAGGG 1 TTTAGGG * 51186594 CTTAGGG 1 TTTAGGG * 51186601 GTTAGGG 1 TTTAGGG * 51186608 GTTAGGG 1 TTTAGGG 51186615 GTCGGGGTCG Statistics Matches: 413, Mismatches: 39, Indels: 40 0.84 0.08 0.08 Matches are distributed among these distances: 6 25 0.06 7 292 0.71 8 96 0.23 ACGTcount: A:0.10, C:0.04, G:0.48, T:0.38 Consensus pattern (7 bp): TTTAGGG Found at i:51186628 original size:7 final size:7 Alignment explanation

Indices: 51186598--51186888 Score: 438 Period size: 7 Copynumber: 42.9 Consensus size: 7 51186588 TTAGGGCTTA * 51186598 GGGGTTA 1 GGGGTTC * 51186605 GGGGTTA 1 GGGGTTC 51186612 GGGG-TC 1 GGGGTTC 51186618 GGGG-TC 1 GGGGTTC * 51186624 GGGGGTC 1 GGGGTTC * 51186631 GGGGGTC 1 GGGGTTC * 51186638 GGGGGTC 1 GGGGTTC * 51186645 GGGGGTC 1 GGGGTTC 51186652 GGGG-TC 1 GGGGTTC 51186658 GGGG-TC 1 GGGGTTC * 51186664 GGGGGTC 1 GGGGTTC * 51186671 GGGGGTC 1 GGGGTTC 51186678 GGGG-TC 1 GGGGTTC * 51186684 GGGGGTC 1 GGGGTTC 51186691 GGGGTTC 1 GGGGTTC 51186698 -GGGTTC 1 GGGGTTC 51186704 GGGGTTC 1 GGGGTTC 51186711 GGGGTTC 1 GGGGTTC 51186718 GGGGTTC 1 GGGGTTC 51186725 GGGGTTC 1 GGGGTTC 51186732 GGGGTTC 1 GGGGTTC 51186739 GGGGTTC 1 GGGGTTC 51186746 GGGGTTC 1 GGGGTTC 51186753 GGGGTTC 1 GGGGTTC 51186760 GGGGTTC 1 GGGGTTC 51186767 GGGGTTC 1 GGGGTTC 51186774 GGGGTTC 1 GGGGTTC 51186781 GGGGTTC 1 GGGGTTC 51186788 GGGGTTC 1 GGGGTTC 51186795 GGGGTTC 1 GGGGTTC 51186802 GGGGTTC 1 GGGGTTC 51186809 GGGGTTC 1 GGGGTTC 51186816 GGGGTTC 1 GGGGTTC 51186823 GGGGTTC 1 GGGGTTC 51186830 -GGGTTC 1 GGGGTTC 51186836 GGGGTTC 1 GGGGTTC 51186843 GGGGTTC 1 GGGGTTC 51186850 GGGGTTC 1 GGGGTTC 51186857 GGGGTTC 1 GGGGTTC 51186864 -GGGTTC 1 GGGGTTC 51186870 -GGGTTC 1 GGGGTTC 51186876 GGGGTTC 1 GGGGTTC 51186883 GGGGTT 1 GGGGTT 51186889 TAGGGTTTAG Statistics Matches: 276, Mismatches: 2, Indels: 12 0.95 0.01 0.04 Matches are distributed among these distances: 6 53 0.19 7 223 0.81 ACGTcount: A:0.01, C:0.14, G:0.60, T:0.25 Consensus pattern (7 bp): GGGGTTC Found at i:51186894 original size:7 final size:7 Alignment explanation

Indices: 51186884--51197720 Score: 20952 Period size: 7 Copynumber: 1546.6 Consensus size: 7 51186874 TCGGGGTTCG 51186884 GGGTTTA 1 GGGTTTA 51186891 GGGTTTA 1 GGGTTTA 51186898 GGGTTTA 1 GGGTTTA 51186905 GGGTTTA 1 GGGTTTA 51186912 GGGTTTA 1 GGGTTTA 51186919 GGGTTTA 1 GGGTTTA 51186926 GGGTTTA 1 GGGTTTA 51186933 GGGTTTA 1 GGGTTTA 51186940 GGGTTTA 1 GGGTTTA 51186947 GGGTTTTA 1 GGG-TTTA 51186955 GGGTTTA 1 GGGTTTA 51186962 GGGTTTA 1 GGGTTTA 51186969 GGGTTTTA 1 GGG-TTTA 51186977 GGGTTTA 1 GGGTTTA 51186984 GGGTTTA 1 GGGTTTA 51186991 GGGTTTA 1 GGGTTTA 51186998 GGGTTTA 1 GGGTTTA 51187005 GGGTTTA 1 GGGTTTA 51187012 GGGTTT- 1 GGGTTTA 51187018 GGGTTTA 1 GGGTTTA * 51187025 GGGCTT- 1 GGGTTTA * 51187031 GGGGTTA 1 GGGTTTA * * 51187038 GGGCTTG 1 GGGTTTA ** 51187045 GGGCTTGG 1 GGG-TTTA 51187053 GGGTTTA 1 GGGTTTA 51187060 GGGTTTA 1 GGGTTTA 51187067 GGGTTTA 1 GGGTTTA 51187074 GGGTTTA 1 GGGTTTA 51187081 GGGTTTTA 1 GGG-TTTA 51187089 GGGTTTA 1 GGGTTTA 51187096 GGGTTGTA 1 GGGTT-TA 51187104 GGGTTGTA 1 GGGTT-TA 51187112 GGGTTTA 1 GGGTTTA 51187119 GGGTTTA 1 GGGTTTA 51187126 GGGTTGTA 1 GGGTT-TA 51187134 GGGTTTA 1 GGGTTTA 51187141 GGGTTGTA 1 GGGTT-TA 51187149 GGGTTTA 1 GGGTTTA 51187156 GGGTTGTA 1 GGGTT-TA 51187164 GGGTTTA 1 GGGTTTA 51187171 GGGTTGTA 1 GGGTT-TA 51187179 GGGTTTA 1 GGGTTTA 51187186 GGGTTTA 1 GGGTTTA 51187193 GGGTTGTA 1 GGGTT-TA 51187201 GGGTTTA 1 GGGTTTA 51187208 GGGTTTA 1 GGGTTTA 51187215 GGGTTT- 1 GGGTTTA 51187221 GGGTTTA 1 GGGTTTA 51187228 GGGTTTA 1 GGGTTTA 51187235 GGGTTGTA 1 GGGTT-TA 51187243 GGGTTGTA 1 GGGTT-TA 51187251 GGGTTGTA 1 GGGTT-TA 51187259 GGGTTGTA 1 GGGTT-TA 51187267 GGG-TTA 1 GGGTTTA 51187273 GGGTTTA 1 GGGTTTA 51187280 GGGTTGTA 1 GGGTT-TA 51187288 GGGTTTA 1 GGGTTTA 51187295 GGGTTGTA 1 GGGTT-TA 51187303 GGGTTTTA 1 GGG-TTTA 51187311 GGGTTGTA 1 GGGTT-TA 51187319 GGGTTTA 1 GGGTTTA 51187326 GGGTTGTA 1 GGGTT-TA 51187334 GGGTTTA 1 GGGTTTA 51187341 GGGTTTTA 1 GGG-TTTA 51187349 GGG-TTA 1 GGGTTTA 51187355 GGGTTGTA 1 GGGTT-TA 51187363 GGGTTTA 1 GGGTTTA 51187370 GGGTTGTA 1 GGGTT-TA 51187378 GGGTTTGTA 1 GGG-TT-TA 51187387 GGGTTTA 1 GGGTTTA 51187394 GGGTTGTA 1 GGGTT-TA 51187402 GGGTTTA 1 GGGTTTA 51187409 GGGTTTA 1 GGGTTTA 51187416 GGGTTTA 1 GGGTTTA 51187423 GGGTTTA 1 GGGTTTA 51187430 GGGTTTA 1 GGGTTTA 51187437 GGGTTTTA 1 GGG-TTTA 51187445 GGGTTTA 1 GGGTTTA 51187452 GGGTTTA 1 GGGTTTA 51187459 GGGTTTA 1 GGGTTTA 51187466 GGGTTTA 1 GGGTTTA 51187473 GGGTTTA 1 GGGTTTA 51187480 GGGTTTA 1 GGGTTTA 51187487 GGGTTTA 1 GGGTTTA 51187494 GGGTTTA 1 GGGTTTA 51187501 GGGTTTA 1 GGGTTTA 51187508 GGGTTTA 1 GGGTTTA 51187515 GGGTTTA 1 GGGTTTA 51187522 GGGTTTA 1 GGGTTTA 51187529 GGGTTTA 1 GGGTTTA 51187536 GGGTTTA 1 GGGTTTA 51187543 GGGTTTA 1 GGGTTTA 51187550 GGGTTTA 1 GGGTTTA 51187557 GGGTTTA 1 GGGTTTA 51187564 GGGTTTTA 1 GGG-TTTA 51187572 GGGTTTA 1 GGGTTTA 51187579 GGGTTTA 1 GGGTTTA 51187586 GGGTTTA 1 GGGTTTA 51187593 GGGTTTA 1 GGGTTTA 51187600 GGGTTTA 1 GGGTTTA 51187607 GGGTTTA 1 GGGTTTA 51187614 GGGTTTA 1 GGGTTTA 51187621 GGGTTTA 1 GGGTTTA 51187628 GGGTTTA 1 GGGTTTA 51187635 GGGTTTA 1 GGGTTTA 51187642 GGGTTTA 1 GGGTTTA 51187649 GGGTTTA 1 GGGTTTA 51187656 GGGTTTA 1 GGGTTTA 51187663 GGGTTTA 1 GGGTTTA 51187670 GGGTTTTA 1 GGG-TTTA 51187678 GGGTTTA 1 GGGTTTA 51187685 GGGTTTA 1 GGGTTTA 51187692 GGGTTTA 1 GGGTTTA 51187699 GGGTTTA 1 GGGTTTA 51187706 GGGTTTA 1 GGGTTTA 51187713 GGGTTTA 1 GGGTTTA 51187720 GGGTTTA 1 GGGTTTA 51187727 GGGTTTA 1 GGGTTTA 51187734 GGGTTTA 1 GGGTTTA 51187741 GGGTTTA 1 GGGTTTA 51187748 GGGTTTA 1 GGGTTTA 51187755 GGGTTTA 1 GGGTTTA 51187762 GGGTTTA 1 GGGTTTA 51187769 GGGTTTA 1 GGGTTTA 51187776 GGGTTTA 1 GGGTTTA 51187783 GGGTTTA 1 GGGTTTA 51187790 GGGTTTA 1 GGGTTTA 51187797 GGGTTTA 1 GGGTTTA 51187804 GGGTTTA 1 GGGTTTA 51187811 GGGTTTA 1 GGGTTTA 51187818 GGGTTTA 1 GGGTTTA 51187825 GGGTTTA 1 GGGTTTA 51187832 GGGTTTA 1 GGGTTTA 51187839 GGGTTTA 1 GGGTTTA 51187846 GGGTTTA 1 GGGTTTA 51187853 GGGTTTA 1 GGGTTTA 51187860 GGGTTTA 1 GGGTTTA 51187867 GGGTTTA 1 GGGTTTA 51187874 GGGTTTA 1 GGGTTTA 51187881 GGGTTTA 1 GGGTTTA 51187888 GGGTTTA 1 GGGTTTA 51187895 GGGTTTA 1 GGGTTTA 51187902 GGGTTTA 1 GGGTTTA 51187909 GGGTTTA 1 GGGTTTA 51187916 GGGTTTA 1 GGGTTTA 51187923 GGGTTTA 1 GGGTTTA 51187930 GGGTTTA 1 GGGTTTA 51187937 GGGTTTA 1 GGGTTTA 51187944 GGGTTTA 1 GGGTTTA 51187951 GGGTTTA 1 GGGTTTA 51187958 GGGTTTA 1 GGGTTTA 51187965 GGGTTTA 1 GGGTTTA 51187972 GGGTTTA 1 GGGTTTA 51187979 GGGTTTA 1 GGGTTTA 51187986 GGGTTTA 1 GGGTTTA 51187993 GGGTTTA 1 GGGTTTA 51188000 GGGTTTA 1 GGGTTTA 51188007 GGGTTTA 1 GGGTTTA 51188014 GGGTTTA 1 GGGTTTA 51188021 GGGTTTA 1 GGGTTTA 51188028 GGGTTTA 1 GGGTTTA 51188035 GGGTTTA 1 GGGTTTA 51188042 GGGTTTA 1 GGGTTTA 51188049 GGGTTTA 1 GGGTTTA 51188056 GGGTTTA 1 GGGTTTA 51188063 GGGTTTA 1 GGGTTTA 51188070 GGGTTTA 1 GGGTTTA 51188077 GGGTTTA 1 GGGTTTA 51188084 GGGTTTA 1 GGGTTTA 51188091 GGGTTTA 1 GGGTTTA 51188098 GGGTTTA 1 GGGTTTA 51188105 GGGTTTA 1 GGGTTTA 51188112 GGGTTTA 1 GGGTTTA 51188119 GGGTTTA 1 GGGTTTA 51188126 GGGTTTA 1 GGGTTTA 51188133 GGGTTTA 1 GGGTTTA 51188140 GGGTTTA 1 GGGTTTA 51188147 GGGTTTA 1 GGGTTTA 51188154 GGGTTTA 1 GGGTTTA 51188161 GGGTTTA 1 GGGTTTA 51188168 GGGTTTA 1 GGGTTTA 51188175 GGGTTTA 1 GGGTTTA 51188182 GGGTTTA 1 GGGTTTA 51188189 GGGTTTA 1 GGGTTTA 51188196 GGGTTTA 1 GGGTTTA 51188203 GGGTTTA 1 GGGTTTA 51188210 GGGTTTA 1 GGGTTTA 51188217 GGGTTTA 1 GGGTTTA 51188224 GGGTTTA 1 GGGTTTA 51188231 GGGTTTA 1 GGGTTTA 51188238 GGGTTTA 1 GGGTTTA 51188245 GGGTTTA 1 GGGTTTA 51188252 GGGTTTA 1 GGGTTTA 51188259 GGGTTTA 1 GGGTTTA 51188266 GGGTTTA 1 GGGTTTA 51188273 GGGTTTA 1 GGGTTTA 51188280 GGGTTTA 1 GGGTTTA 51188287 GGGTTTA 1 GGGTTTA 51188294 GGGTTTA 1 GGGTTTA 51188301 GGGTTTA 1 GGGTTTA 51188308 GGGTTTA 1 GGGTTTA 51188315 GGGTTTA 1 GGGTTTA 51188322 GGGTTTA 1 GGGTTTA 51188329 GGGTTTA 1 GGGTTTA 51188336 GGGTTTA 1 GGGTTTA 51188343 GGGTTTA 1 GGGTTTA 51188350 GGGTTTA 1 GGGTTTA 51188357 GGGTTTA 1 GGGTTTA 51188364 GGGTTTA 1 GGGTTTA 51188371 GGGTTTA 1 GGGTTTA 51188378 GGGTTTA 1 GGGTTTA 51188385 GGGTTTA 1 GGGTTTA 51188392 GGGTTTA 1 GGGTTTA 51188399 GGGTTTA 1 GGGTTTA 51188406 GGGTTTA 1 GGGTTTA 51188413 GGGTTTA 1 GGGTTTA 51188420 GGGTTTA 1 GGGTTTA 51188427 GGGTTTA 1 GGGTTTA 51188434 GGGTTTA 1 GGGTTTA 51188441 GGGTTTA 1 GGGTTTA 51188448 GGGTTTA 1 GGGTTTA 51188455 GGGTTTA 1 GGGTTTA 51188462 GGGTTTA 1 GGGTTTA 51188469 GGGTTTA 1 GGGTTTA 51188476 GGGTTTA 1 GGGTTTA 51188483 GGGTTTA 1 GGGTTTA 51188490 GGGTTTA 1 GGGTTTA 51188497 GGGTTTA 1 GGGTTTA 51188504 GGGTTTA 1 GGGTTTA 51188511 GGGTTTA 1 GGGTTTA 51188518 GGGTTTA 1 GGGTTTA 51188525 GGGTTTA 1 GGGTTTA 51188532 GGGTTTA 1 GGGTTTA 51188539 GGGTTTA 1 GGGTTTA 51188546 GGGTTTA 1 GGGTTTA 51188553 GGGTTTA 1 GGGTTTA 51188560 GGGTTTA 1 GGGTTTA 51188567 GGGTTTA 1 GGGTTTA 51188574 GGGTTTA 1 GGGTTTA 51188581 GGGTTTTA 1 GGG-TTTA 51188589 GGGTTTA 1 GGGTTTA 51188596 GGGTTTA 1 GGGTTTA 51188603 GGGTTTA 1 GGGTTTA 51188610 GGGTTTA 1 GGGTTTA 51188617 GGGTTTA 1 GGGTTTA 51188624 GGGTTTA 1 GGGTTTA 51188631 GGGTTTA 1 GGGTTTA 51188638 GGGTTTA 1 GGGTTTA 51188645 GGGTTTA 1 GGGTTTA 51188652 GGGTTTA 1 GGGTTTA 51188659 GGGTTTA 1 GGGTTTA 51188666 GGG-TTA 1 GGGTTTA 51188672 GGGTTTA 1 GGGTTTA 51188679 GGGTTTA 1 GGGTTTA 51188686 GGGTTTA 1 GGGTTTA 51188693 GGGTTTA 1 GGGTTTA 51188700 GGGTTTA 1 GGGTTTA 51188707 GGGTTTA 1 GGGTTTA 51188714 GGGTTTA 1 GGGTTTA 51188721 GGGTTTA 1 GGGTTTA 51188728 GGGTTTA 1 GGGTTTA 51188735 GGGTTTA 1 GGGTTTA 51188742 GGGTTTA 1 GGGTTTA 51188749 GGGTTTA 1 GGGTTTA 51188756 GGGTTTA 1 GGGTTTA 51188763 GGGTTTA 1 GGGTTTA 51188770 GGGTTTA 1 GGGTTTA 51188777 GGGTTTA 1 GGGTTTA 51188784 GGGTTTA 1 GGGTTTA 51188791 GGGTTTA 1 GGGTTTA 51188798 GGGTTTA 1 GGGTTTA 51188805 GGGTTTA 1 GGGTTTA 51188812 GGGTTTA 1 GGGTTTA 51188819 GGGTTTA 1 GGGTTTA 51188826 GGGTTTA 1 GGGTTTA 51188833 GGGTTTA 1 GGGTTTA 51188840 GGGTTTA 1 GGGTTTA 51188847 GGGTTTA 1 GGGTTTA 51188854 GGGTTTA 1 GGGTTTA 51188861 GGGTTTA 1 GGGTTTA 51188868 GGGTTTA 1 GGGTTTA 51188875 GGGTTTA 1 GGGTTTA 51188882 GGGTTTA 1 GGGTTTA 51188889 GGGTTTA 1 GGGTTTA 51188896 GGGTTTA 1 GGGTTTA 51188903 GGGTTTA 1 GGGTTTA 51188910 ---TTTA 1 GGGTTTA 51188914 GGGTTTA 1 GGGTTTA 51188921 GGGTTTA 1 GGGTTTA 51188928 GGGTTTA 1 GGGTTTA 51188935 GGGTTTA 1 GGGTTTA 51188942 GGGTTTA 1 GGGTTTA 51188949 GGGTTTA 1 GGGTTTA 51188956 GGGTTTA 1 GGGTTTA 51188963 GGGTTTA 1 GGGTTTA 51188970 GGGTTTTA 1 GGG-TTTA 51188978 GGGTTTA 1 GGGTTTA 51188985 GGGTTTA 1 GGGTTTA 51188992 GGGTTTA 1 GGGTTTA 51188999 GGGTTTA 1 GGGTTTA 51189006 GGGTTTA 1 GGGTTTA 51189013 GGGTTTTA 1 GGG-TTTA 51189021 GGGTTTA 1 GGGTTTA 51189028 GGGTTTA 1 GGGTTTA 51189035 GGGTTTA 1 GGGTTTA 51189042 GGGTTTA 1 GGGTTTA 51189049 GGGTTTA 1 GGGTTTA 51189056 GGGTTTA 1 GGGTTTA 51189063 GGGTTTA 1 GGGTTTA 51189070 GGGTTTA 1 GGGTTTA 51189077 GGGTTTA 1 GGGTTTA 51189084 GGGTTTA 1 GGGTTTA 51189091 GGGTTTA 1 GGGTTTA 51189098 GGGTTTA 1 GGGTTTA 51189105 GGGTTTA 1 GGGTTTA 51189112 GGGTTTA 1 GGGTTTA 51189119 GGGTTTA 1 GGGTTTA 51189126 GGGTTTA 1 GGGTTTA 51189133 GGGTTTA 1 GGGTTTA 51189140 GGGTTTA 1 GGGTTTA 51189147 GGGTTTA 1 GGGTTTA 51189154 GGGTTTA 1 GGGTTTA 51189161 GGGTTTA 1 GGGTTTA 51189168 GGGTTTA 1 GGGTTTA 51189175 GGGTTTA 1 GGGTTTA 51189182 GGGTTTA 1 GGGTTTA 51189189 GGGTTTA 1 GGGTTTA 51189196 GGGTTTA 1 GGGTTTA 51189203 GGGTTTA 1 GGGTTTA 51189210 GGGTTTA 1 GGGTTTA 51189217 GGGTTTA 1 GGGTTTA 51189224 GGGTTTA 1 GGGTTTA 51189231 GGGTTTA 1 GGGTTTA 51189238 GGGTTTA 1 GGGTTTA 51189245 GGGTTTA 1 GGGTTTA 51189252 GGGTTTA 1 GGGTTTA 51189259 GGGTTTA 1 GGGTTTA 51189266 GGGTTTA 1 GGGTTTA 51189273 GGGTTTA 1 GGGTTTA 51189280 GGGTTTA 1 GGGTTTA 51189287 GGGTTTA 1 GGGTTTA 51189294 GGGTTTA 1 GGGTTTA 51189301 GGGTTTA 1 GGGTTTA 51189308 GGGTTTA 1 GGGTTTA 51189315 GGGTTTTA 1 GGG-TTTA 51189323 GGGTTTA 1 GGGTTTA 51189330 GGGTTTA 1 GGGTTTA 51189337 GGGTTTA 1 GGGTTTA 51189344 GGGTTTA 1 GGGTTTA 51189351 GGGTTTA 1 GGGTTTA 51189358 GGGTTTA 1 GGGTTTA 51189365 GGGTTTA 1 GGGTTTA 51189372 GGGTTTA 1 GGGTTTA 51189379 GGGTTTA 1 GGGTTTA 51189386 GGGTTTA 1 GGGTTTA 51189393 GGGTTTA 1 GGGTTTA 51189400 GGGTTTA 1 GGGTTTA 51189407 GGGTTTA 1 GGGTTTA 51189414 GGGTTTA 1 GGGTTTA 51189421 GGGTTTA 1 GGGTTTA 51189428 GGGTTTA 1 GGGTTTA 51189435 GGGTTTA 1 GGGTTTA 51189442 GGGTTTA 1 GGGTTTA 51189449 GGGTTTA 1 GGGTTTA 51189456 GGGTTTA 1 GGGTTTA 51189463 GGGTTTA 1 GGGTTTA 51189470 GGGTTTA 1 GGGTTTA 51189477 GGGTTTA 1 GGGTTTA 51189484 GGGTTTA 1 GGGTTTA 51189491 GGGTTTA 1 GGGTTTA 51189498 GGGTTTA 1 GGGTTTA 51189505 GGGTTTA 1 GGGTTTA 51189512 GGGTTTA 1 GGGTTTA 51189519 GGGTTTA 1 GGGTTTA 51189526 GGGTTTA 1 GGGTTTA 51189533 GGGTTTA 1 GGGTTTA 51189540 GGGTTTA 1 GGGTTTA 51189547 GGGTTTA 1 GGGTTTA 51189554 GGGTTTA 1 GGGTTTA 51189561 GGGTTTA 1 GGGTTTA 51189568 GGGTTTA 1 GGGTTTA 51189575 GGGTTTA 1 GGGTTTA 51189582 GGGTTTA 1 GGGTTTA 51189589 GGGTTTA 1 GGGTTTA 51189596 GGGTTTA 1 GGGTTTA 51189603 GGGTTTA 1 GGGTTTA 51189610 GGGTTTA 1 GGGTTTA 51189617 GGGTTTA 1 GGGTTTA 51189624 GGGTTTA 1 GGGTTTA 51189631 GGGTTTA 1 GGGTTTA 51189638 GGGTTTA 1 GGGTTTA 51189645 GGGTTTA 1 GGGTTTA 51189652 GGGTTTA 1 GGGTTTA 51189659 GGGTTTA 1 GGGTTTA 51189666 GGGTTTA 1 GGGTTTA 51189673 GGGTTTA 1 GGGTTTA 51189680 GGGTTTA 1 GGGTTTA 51189687 GGGTTTA 1 GGGTTTA 51189694 GGGTTTA 1 GGGTTTA 51189701 GGGTTTA 1 GGGTTTA 51189708 GGGTTTA 1 GGGTTTA 51189715 GGGTTTA 1 GGGTTTA 51189722 GGGTTTA 1 GGGTTTA 51189729 GGGTTTA 1 GGGTTTA 51189736 GGGTTTA 1 GGGTTTA 51189743 GGGTTTA 1 GGGTTTA 51189750 GGGTTTA 1 GGGTTTA 51189757 GGGTTTA 1 GGGTTTA 51189764 GGGTTTA 1 GGGTTTA 51189771 GGGTTTA 1 GGGTTTA 51189778 GGGTTTA 1 GGGTTTA 51189785 GGGTTTA 1 GGGTTTA 51189792 GGGTTTA 1 GGGTTTA 51189799 GGGTTTA 1 GGGTTTA 51189806 GGGTTTA 1 GGGTTTA 51189813 GGGTTTA 1 GGGTTTA 51189820 GGGTTTA 1 GGGTTTA 51189827 GGGTTTA 1 GGGTTTA 51189834 GGGTTTA 1 GGGTTTA 51189841 GGGTTTA 1 GGGTTTA 51189848 GGGTTTA 1 GGGTTTA 51189855 GGGTTTA 1 GGGTTTA 51189862 GGGTTTA 1 GGGTTTA 51189869 GGGTTTA 1 GGGTTTA 51189876 GGGTTTA 1 GGGTTTA 51189883 GGGTTTA 1 GGGTTTA 51189890 GGGTTTA 1 GGGTTTA 51189897 GGGTTTA 1 GGGTTTA 51189904 GGGTTTA 1 GGGTTTA 51189911 GGGTTTA 1 GGGTTTA 51189918 GGGTTTA 1 GGGTTTA 51189925 GGGTTTA 1 GGGTTTA 51189932 GGGTTTA 1 GGGTTTA 51189939 GGGTTTA 1 GGGTTTA 51189946 GGGTTTA 1 GGGTTTA 51189953 GGGTTTA 1 GGGTTTA 51189960 GGGTTTA 1 GGGTTTA 51189967 GGGTTTA 1 GGGTTTA 51189974 GGGTTTA 1 GGGTTTA 51189981 GGGTTTA 1 GGGTTTA 51189988 GGGTTTA 1 GGGTTTA 51189995 GGGTTTA 1 GGGTTTA 51190002 GGGTTTA 1 GGGTTTA 51190009 GGGTTTA 1 GGGTTTA 51190016 GGGTTTA 1 GGGTTTA 51190023 GGGTTTA 1 GGGTTTA 51190030 GGGTTTA 1 GGGTTTA 51190037 GGGTTTA 1 GGGTTTA 51190044 GGGTTTA 1 GGGTTTA 51190051 GGGTTTA 1 GGGTTTA 51190058 GGGTTTA 1 GGGTTTA 51190065 GGGTTTA 1 GGGTTTA 51190072 GGGTTTA 1 GGGTTTA 51190079 GGGTTTA 1 GGGTTTA 51190086 GGGTTTA 1 GGGTTTA 51190093 GGGTTTA 1 GGGTTTA 51190100 GGGTTTA 1 GGGTTTA 51190107 GGGTTTA 1 GGGTTTA 51190114 GGGTTTA 1 GGGTTTA 51190121 GGGTTTA 1 GGGTTTA 51190128 GGGTTTA 1 GGGTTTA 51190135 GGGTTTA 1 GGGTTTA 51190142 GGGTTTA 1 GGGTTTA 51190149 GGGTTTA 1 GGGTTTA 51190156 GGGTTTA 1 GGGTTTA 51190163 GGGTTTA 1 GGGTTTA 51190170 GGGTTTA 1 GGGTTTA 51190177 GGGTTTA 1 GGGTTTA 51190184 GGGTTTA 1 GGGTTTA 51190191 GGGTTTA 1 GGGTTTA 51190198 GGGTTTA 1 GGGTTTA 51190205 GGGTTTA 1 GGGTTTA 51190212 GGGTTTA 1 GGGTTTA 51190219 GGGTTTA 1 GGGTTTA 51190226 GGGTTTA 1 GGGTTTA 51190233 GGGTTTA 1 GGGTTTA 51190240 GGGTTTA 1 GGGTTTA 51190247 GGGTTTA 1 GGGTTTA 51190254 GGGTTTA 1 GGGTTTA 51190261 GGGTTTA 1 GGGTTTA 51190268 GGGTTTA 1 GGGTTTA 51190275 GGGTTTA 1 GGGTTTA 51190282 GGGTTTA 1 GGGTTTA 51190289 GGGTTTA 1 GGGTTTA 51190296 GGGTTTA 1 GGGTTTA 51190303 GGGTTTA 1 GGGTTTA 51190310 GGGTTTA 1 GGGTTTA 51190317 GGGTTTA 1 GGGTTTA 51190324 GGGTTTA 1 GGGTTTA 51190331 GGGTTTA 1 GGGTTTA 51190338 GGGTTTA 1 GGGTTTA 51190345 GGGTTTA 1 GGGTTTA 51190352 GGGTTTA 1 GGGTTTA 51190359 GGGTTTA 1 GGGTTTA 51190366 GGGTTTA 1 GGGTTTA 51190373 GGGTTTA 1 GGGTTTA 51190380 GGGTTTA 1 GGGTTTA 51190387 GGGTTTA 1 GGGTTTA 51190394 GGGTTTA 1 GGGTTTA 51190401 GGGTTTA 1 GGGTTTA 51190408 GGGTTTA 1 GGGTTTA 51190415 -GG-TT- 1 GGGTTTA 51190419 GGGTTTA 1 GGGTTTA 51190426 GGGTTTA 1 GGGTTTA 51190433 GGGTTTA 1 GGGTTTA 51190440 GGGTTTA 1 GGGTTTA 51190447 GGGTTTA 1 GGGTTTA 51190454 GGGTTTA 1 GGGTTTA 51190461 GGGTTTA 1 GGGTTTA 51190468 GGGTTTA 1 GGGTTTA 51190475 GGGTTTA 1 GGGTTTA 51190482 GGGTTTA 1 GGGTTTA 51190489 GGGTTTA 1 GGGTTTA 51190496 GGGTTTA 1 GGGTTTA 51190503 GGGTTTA 1 GGGTTTA 51190510 GGGTTTA 1 GGGTTTA 51190517 GGGTTTA 1 GGGTTTA 51190524 GGGTTTA 1 GGGTTTA 51190531 GGGTTTA 1 GGGTTTA 51190538 GGGTTTA 1 GGGTTTA 51190545 GGGTTTA 1 GGGTTTA 51190552 GGGTTTA 1 GGGTTTA 51190559 GGGTTTA 1 GGGTTTA 51190566 GGGTTTA 1 GGGTTTA 51190573 GGGTTTA 1 GGGTTTA 51190580 GGGTTTA 1 GGGTTTA 51190587 GGGTTTA 1 GGGTTTA 51190594 GGGTTTA 1 GGGTTTA 51190601 GGGTTTA 1 GGGTTTA 51190608 GGGTTTA 1 GGGTTTA 51190615 GGGTTTA 1 GGGTTTA 51190622 GGGTTTA 1 GGGTTTA 51190629 GGGTTTA 1 GGGTTTA 51190636 GGGTTTA 1 GGGTTTA 51190643 GGGTTTA 1 GGGTTTA 51190650 GGGTTTA 1 GGGTTTA 51190657 GGGTTTA 1 GGGTTTA 51190664 GGGTTTA 1 GGGTTTA 51190671 GGGTTTA 1 GGGTTTA 51190678 GGGTTTA 1 GGGTTTA 51190685 GGGTTTA 1 GGGTTTA 51190692 GGGTTTA 1 GGGTTTA 51190699 GGGTTTA 1 GGGTTTA 51190706 GGGTTTA 1 GGGTTTA 51190713 GGGTTTA 1 GGGTTTA 51190720 GGGTTTA 1 GGGTTTA 51190727 GGGTTTA 1 GGGTTTA 51190734 GGGTTTA 1 GGGTTTA 51190741 GGGTTTA 1 GGGTTTA 51190748 GGGTTTA 1 GGGTTTA 51190755 GGGTTTA 1 GGGTTTA 51190762 GGGTTTA 1 GGGTTTA 51190769 GGGTTTA 1 GGGTTTA 51190776 GGGTTTA 1 GGGTTTA 51190783 GGGTTTA 1 GGGTTTA 51190790 GGGTTTA 1 GGGTTTA 51190797 GGGTTTA 1 GGGTTTA 51190804 GGGTTTA 1 GGGTTTA 51190811 GGGTTTA 1 GGGTTTA 51190818 GGGTTTA 1 GGGTTTA 51190825 GGGTTTA 1 GGGTTTA 51190832 GGGTTTA 1 GGGTTTA 51190839 GGGTTTA 1 GGGTTTA 51190846 GGGTTTA 1 GGGTTTA 51190853 GGGTTTA 1 GGGTTTA 51190860 GGGTTTA 1 GGGTTTA 51190867 GGGTTTA 1 GGGTTTA 51190874 GGGTTTA 1 GGGTTTA 51190881 GGGTTTA 1 GGGTTTA 51190888 GGGTTTA 1 GGGTTTA 51190895 GGGTTTA 1 GGGTTTA 51190902 GGGTTTA 1 GGGTTTA 51190909 GGGTTTA 1 GGGTTTA 51190916 GGGTTTA 1 GGGTTTA 51190923 GGGTTTA 1 GGGTTTA 51190930 GGGTTTA 1 GGGTTTA 51190937 GGGTTTA 1 GGGTTTA 51190944 GGGTTTA 1 GGGTTTA 51190951 GGGTTTA 1 GGGTTTA 51190958 GGGTTTA 1 GGGTTTA 51190965 GGGTTTA 1 GGGTTTA 51190972 GGGTTTA 1 GGGTTTA 51190979 GGGTTTA 1 GGGTTTA 51190986 GGGTTTA 1 GGGTTTA 51190993 GGGTTTA 1 GGGTTTA 51191000 GGGTTTA 1 GGGTTTA 51191007 GGGTTTA 1 GGGTTTA 51191014 GGGTTTA 1 GGGTTTA 51191021 GGGTTTA 1 GGGTTTA 51191028 GGGTTTA 1 GGGTTTA 51191035 GGGTTTA 1 GGGTTTA 51191042 GGGTTTA 1 GGGTTTA 51191049 GGGTTTA 1 GGGTTTA 51191056 GGGTTTA 1 GGGTTTA 51191063 GGGTTTA 1 GGGTTTA 51191070 GGGTTTA 1 GGGTTTA 51191077 GGGTTTA 1 GGGTTTA 51191084 GGGTTTA 1 GGGTTTA 51191091 GGGTTTA 1 GGGTTTA 51191098 GGGTTTA 1 GGGTTTA 51191105 GGGTTTA 1 GGGTTTA 51191112 GGGTTTA 1 GGGTTTA 51191119 GGGTTTA 1 GGGTTTA 51191126 GGGTTTA 1 GGGTTTA 51191133 GGGTTTA 1 GGGTTTA 51191140 GGGTTTA 1 GGGTTTA 51191147 GGGTTTA 1 GGGTTTA 51191154 GGGTTTA 1 GGGTTTA 51191161 GGGTTTA 1 GGGTTTA 51191168 GGGTTTA 1 GGGTTTA 51191175 GGGTTTA 1 GGGTTTA 51191182 GGGTTTA 1 GGGTTTA 51191189 GGGTTTA 1 GGGTTTA 51191196 GGGTTTA 1 GGGTTTA 51191203 GGGTTTA 1 GGGTTTA 51191210 GGGTTTA 1 GGGTTTA 51191217 GGGTTTA 1 GGGTTTA 51191224 GGGTTTA 1 GGGTTTA 51191231 GGGTTTA 1 GGGTTTA 51191238 GGGTTTA 1 GGGTTTA 51191245 GGGTTTA 1 GGGTTTA 51191252 GGGTTTA 1 GGGTTTA 51191259 GGGTTTA 1 GGGTTTA 51191266 GGGTTTA 1 GGGTTTA 51191273 GGGTTTA 1 GGGTTTA 51191280 GGGTTTA 1 GGGTTTA 51191287 GGGTTTA 1 GGGTTTA 51191294 GGGTTTA 1 GGGTTTA 51191301 GGGTTTA 1 GGGTTTA 51191308 GGGTTTA 1 GGGTTTA 51191315 GGGTTTA 1 GGGTTTA 51191322 GGGTTTA 1 GGGTTTA 51191329 GGGTTTA 1 GGGTTTA 51191336 GGGTTTA 1 GGGTTTA 51191343 GGGTTTA 1 GGGTTTA 51191350 GGGTTTA 1 GGGTTTA 51191357 GGGTTTA 1 GGGTTTA 51191364 GGGTTTA 1 GGGTTTA 51191371 GGGTTTA 1 GGGTTTA 51191378 GGGTTTA 1 GGGTTTA 51191385 GGGTTTA 1 GGGTTTA 51191392 GGGTTTA 1 GGGTTTA 51191399 GGGTTTA 1 GGGTTTA 51191406 GGGTTTA 1 GGGTTTA 51191413 GGGTTTA 1 GGGTTTA 51191420 GGGTTTA 1 GGGTTTA 51191427 GGGTTTA 1 GGGTTTA 51191434 GGGTTTA 1 GGGTTTA 51191441 GGGTTTA 1 GGGTTTA 51191448 GGGTTTA 1 GGGTTTA 51191455 GGGTTTA 1 GGGTTTA 51191462 GGGTTTA 1 GGGTTTA 51191469 GGGTTTA 1 GGGTTTA 51191476 GGGTTTA 1 GGGTTTA 51191483 GGGTTTA 1 GGGTTTA 51191490 GGGTTTA 1 GGGTTTA 51191497 GGGTTTA 1 GGGTTTA 51191504 GGGTTTA 1 GGGTTTA 51191511 GGGTTTA 1 GGGTTTA 51191518 GGGTTTA 1 GGGTTTA 51191525 GGGTTTA 1 GGGTTTA 51191532 GGGTTTA 1 GGGTTTA 51191539 GGGTTTA 1 GGGTTTA 51191546 GGGTTTA 1 GGGTTTA 51191553 GGGTTTA 1 GGGTTTA 51191560 GGGTTTA 1 GGGTTTA 51191567 GGGTTTA 1 GGGTTTA 51191574 GGGTTTA 1 GGGTTTA 51191581 GGGTTTA 1 GGGTTTA 51191588 GGGTTTA 1 GGGTTTA 51191595 GGGTTTA 1 GGGTTTA 51191602 GGGTTTA 1 GGGTTTA 51191609 GGGTTTA 1 GGGTTTA 51191616 GGGTTTA 1 GGGTTTA 51191623 GGGTTTA 1 GGGTTTA 51191630 GGGTTTA 1 GGGTTTA 51191637 GGGTTTA 1 GGGTTTA 51191644 GGGTTTA 1 GGGTTTA 51191651 GGGTTTA 1 GGGTTTA 51191658 GGGTTTA 1 GGGTTTA 51191665 GGGTTTA 1 GGGTTTA 51191672 GGGTTTA 1 GGGTTTA 51191679 GGGTTTA 1 GGGTTTA 51191686 GGGTTTA 1 GGGTTTA 51191693 GGGTTTA 1 GGGTTTA 51191700 GGGTTTA 1 GGGTTTA 51191707 GGGTTTA 1 GGGTTTA 51191714 GGGTTTA 1 GGGTTTA 51191721 GGGTTTA 1 GGGTTTA 51191728 GGGTTTA 1 GGGTTTA 51191735 GGGTTTA 1 GGGTTTA 51191742 GGGTTTA 1 GGGTTTA 51191749 GGGTTTA 1 GGGTTTA 51191756 GGGTTTA 1 GGGTTTA 51191763 GGGTTTA 1 GGGTTTA 51191770 GGGTTTA 1 GGGTTTA 51191777 GGGTTTA 1 GGGTTTA 51191784 GGGTTTA 1 GGGTTTA 51191791 GGGTTTA 1 GGGTTTA 51191798 GGGTTTA 1 GGGTTTA 51191805 GGGTTTA 1 GGGTTTA 51191812 GGGTTTA 1 GGGTTTA 51191819 GGGTTTA 1 GGGTTTA 51191826 GGGTTTA 1 GGGTTTA 51191833 GGGTTTA 1 GGGTTTA 51191840 GGGTTTA 1 GGGTTTA 51191847 GGGTTTA 1 GGGTTTA 51191854 GGGTTTA 1 GGGTTTA 51191861 GGGTTTA 1 GGGTTTA 51191868 GGGTTTA 1 GGGTTTA 51191875 GGGTTTA 1 GGGTTTA 51191882 GGGTTTA 1 GGGTTTA 51191889 GGGTTTA 1 GGGTTTA 51191896 GGGTTTA 1 GGGTTTA 51191903 GGGTTTA 1 GGGTTTA 51191910 GGGTTTA 1 GGGTTTA 51191917 GGGTTTA 1 GGGTTTA 51191924 GGGTTTA 1 GGGTTTA 51191931 GGGTTTA 1 GGGTTTA 51191938 GGGTTTA 1 GGGTTTA 51191945 GGGTTTA 1 GGGTTTA 51191952 GGGTTTA 1 GGGTTTA 51191959 GGGTTTA 1 GGGTTTA 51191966 GGGTTTA 1 GGGTTTA 51191973 GGGTTTA 1 GGGTTTA 51191980 GGGTTTA 1 GGGTTTA 51191987 GGGTTTA 1 GGGTTTA 51191994 GGGTTTA 1 GGGTTTA 51192001 GGGTTTA 1 GGGTTTA 51192008 GGGTTTA 1 GGGTTTA 51192015 GGGTTTA 1 GGGTTTA 51192022 GGGTTTA 1 GGGTTTA 51192029 GGGTTTA 1 GGGTTTA 51192036 GGGTTTA 1 GGGTTTA 51192043 GGGTTTA 1 GGGTTTA 51192050 GGGTTTA 1 GGGTTTA 51192057 GGGTTTA 1 GGGTTTA 51192064 GGGTTTA 1 GGGTTTA 51192071 GGGTTTA 1 GGGTTTA 51192078 GGGTTTA 1 GGGTTTA 51192085 GGGTTTA 1 GGGTTTA 51192092 GGGTTTA 1 GGGTTTA 51192099 GGGTTTA 1 GGGTTTA 51192106 GGGTTTA 1 GGGTTTA 51192113 GGGTTTA 1 GGGTTTA 51192120 GGGTTTA 1 GGGTTTA 51192127 GGGTTTA 1 GGGTTTA 51192134 GGGTTTA 1 GGGTTTA 51192141 GGGTTTA 1 GGGTTTA 51192148 GGGTTTA 1 GGGTTTA 51192155 GGGTTTA 1 GGGTTTA 51192162 GGGTTTA 1 GGGTTTA 51192169 GGGTTTA 1 GGGTTTA 51192176 GGGTTTA 1 GGGTTTA 51192183 GGGTTTA 1 GGGTTTA 51192190 GGGTTTA 1 GGGTTTA 51192197 GGGTTTA 1 GGGTTTA 51192204 GGGTTTA 1 GGGTTTA 51192211 GGGTTTA 1 GGGTTTA 51192218 GGGTTTA 1 GGGTTTA 51192225 GGGTTTA 1 GGGTTTA 51192232 GGGTTTA 1 GGGTTTA 51192239 GGGTTTA 1 GGGTTTA 51192246 GGGTTTA 1 GGGTTTA 51192253 GGGTTTA 1 GGGTTTA 51192260 GGGTTTA 1 GGGTTTA 51192267 GGGTTTA 1 GGGTTTA 51192274 GGGTTTA 1 GGGTTTA 51192281 GGGTTTA 1 GGGTTTA 51192288 GGGTTTA 1 GGGTTTA 51192295 GGGTTTA 1 GGGTTTA 51192302 GGGTTTA 1 GGGTTTA 51192309 GGGTTTA 1 GGGTTTA 51192316 GGGTTTA 1 GGGTTTA 51192323 GGGTTTA 1 GGGTTTA 51192330 GGGTTTA 1 GGGTTTA 51192337 GGGTTTA 1 GGGTTTA 51192344 GGGTTTA 1 GGGTTTA 51192351 GGGTTTA 1 GGGTTTA 51192358 GGGTTTA 1 GGGTTTA 51192365 GGGTTTA 1 GGGTTTA 51192372 GGGTTTA 1 GGGTTTA 51192379 GGGTTTA 1 GGGTTTA 51192386 GGGTTTA 1 GGGTTTA 51192393 GGGTTTA 1 GGGTTTA 51192400 GGGTTTA 1 GGGTTTA 51192407 GGGTTTA 1 GGGTTTA 51192414 GGGTTTA 1 GGGTTTA 51192421 GGGTTTA 1 GGGTTTA 51192428 GGGTTTA 1 GGGTTTA 51192435 GGGTTTA 1 GGGTTTA 51192442 GGGTTTA 1 GGGTTTA 51192449 GGGTTTA 1 GGGTTTA 51192456 GGGTTTA 1 GGGTTTA 51192463 GGGTTTA 1 GGGTTTA 51192470 GGGTTTA 1 GGGTTTA 51192477 GGGTTTA 1 GGGTTTA 51192484 GGGTTTA 1 GGGTTTA 51192491 GGGTTTA 1 GGGTTTA 51192498 GGGTTTA 1 GGGTTTA 51192505 GGGTTTA 1 GGGTTTA 51192512 GGGTTTA 1 GGGTTTA 51192519 GGGTTTA 1 GGGTTTA 51192526 GGGTTTA 1 GGGTTTA 51192533 GGGTTTA 1 GGGTTTA 51192540 GGGTTTA 1 GGGTTTA 51192547 GGGTTTA 1 GGGTTTA 51192554 GGGTTTA 1 GGGTTTA 51192561 GGGTTTA 1 GGGTTTA 51192568 GGGTTTA 1 GGGTTTA 51192575 GGGTTTA 1 GGGTTTA 51192582 GGGTTTA 1 GGGTTTA 51192589 GGGTTTA 1 GGGTTTA 51192596 GGGTTTA 1 GGGTTTA 51192603 GGGTTTA 1 GGGTTTA 51192610 GGGTTTA 1 GGGTTTA 51192617 GGGTTTA 1 GGGTTTA 51192624 GGGTTTA 1 GGGTTTA 51192631 GGGTTTA 1 GGGTTTA 51192638 GGGTTTA 1 GGGTTTA 51192645 GGGTTTA 1 GGGTTTA 51192652 GGGTTTA 1 GGGTTTA 51192659 GGGTTTA 1 GGGTTTA 51192666 GGGTTTA 1 GGGTTTA 51192673 GGGTTTA 1 GGGTTTA 51192680 GGGTTTA 1 GGGTTTA 51192687 GGGTTTA 1 GGGTTTA 51192694 GGGTTTA 1 GGGTTTA 51192701 GGGTTTA 1 GGGTTTA 51192708 GGGTTTA 1 GGGTTTA 51192715 GGGTTTA 1 GGGTTTA 51192722 GGGTTTA 1 GGGTTTA 51192729 GGGTTTA 1 GGGTTTA 51192736 GGGTTTA 1 GGGTTTA 51192743 GGGTTTA 1 GGGTTTA 51192750 GGGTTTA 1 GGGTTTA 51192757 GGGTTTA 1 GGGTTTA 51192764 GGGTTTA 1 GGGTTTA 51192771 GGGTTTA 1 GGGTTTA 51192778 GGGTTTA 1 GGGTTTA 51192785 GGGTTTA 1 GGGTTTA 51192792 GGGTTTA 1 GGGTTTA 51192799 GGGTTTA 1 GGGTTTA 51192806 GGGTTTA 1 GGGTTTA 51192813 GGGTTTA 1 GGGTTTA 51192820 GGGTTTA 1 GGGTTTA 51192827 GGGTTTA 1 GGGTTTA 51192834 GGGTTTA 1 GGGTTTA 51192841 GGGTTTA 1 GGGTTTA 51192848 GGGTTTA 1 GGGTTTA 51192855 GGGTTTA 1 GGGTTTA 51192862 GGGTTTA 1 GGGTTTA 51192869 GGGTTTA 1 GGGTTTA 51192876 GGGTTTA 1 GGGTTTA 51192883 GGGTTTA 1 GGGTTTA 51192890 GGGTTTA 1 GGGTTTA 51192897 GGGTTTA 1 GGGTTTA 51192904 GGGTTTA 1 GGGTTTA 51192911 GGGTTTA 1 GGGTTTA 51192918 GGGTTTA 1 GGGTTTA 51192925 GGGTTTA 1 GGGTTTA 51192932 GGGTTTA 1 GGGTTTA 51192939 GGGTTTA 1 GGGTTTA 51192946 GGGTTTA 1 GGGTTTA 51192953 GGGTTTA 1 GGGTTTA 51192960 GGGTTTA 1 GGGTTTA 51192967 GGGTTTA 1 GGGTTTA 51192974 GGGTTTA 1 GGGTTTA 51192981 GGGTTTA 1 GGGTTTA 51192988 GGGTTTA 1 GGGTTTA 51192995 GGGTTTA 1 GGGTTTA 51193002 GGGTTTA 1 GGGTTTA 51193009 GGGTTTA 1 GGGTTTA 51193016 GGGTTTA 1 GGGTTTA 51193023 GGGTTTA 1 GGGTTTA 51193030 GGGTTTA 1 GGGTTTA 51193037 GGGTTTA 1 GGGTTTA 51193044 GGGTTTA 1 GGGTTTA 51193051 GGGTTTA 1 GGGTTTA 51193058 GGGTTTA 1 GGGTTTA 51193065 GGGTTTA 1 GGGTTTA 51193072 GGGTTTA 1 GGGTTTA 51193079 GGGTTTA 1 GGGTTTA 51193086 GGGTTTA 1 GGGTTTA 51193093 GGGTTTA 1 GGGTTTA 51193100 GGGTTTA 1 GGGTTTA 51193107 GGGTTTA 1 GGGTTTA 51193114 GGGTTTA 1 GGGTTTA 51193121 GGGTTTA 1 GGGTTTA 51193128 GGGTTTA 1 GGGTTTA 51193135 GGGTTTA 1 GGGTTTA 51193142 GGGTTTA 1 GGGTTTA 51193149 GGGTTTA 1 GGGTTTA 51193156 GGGTTTA 1 GGGTTTA 51193163 GGGTTTA 1 GGGTTTA 51193170 GGGTTTA 1 GGGTTTA 51193177 GGGTTTA 1 GGGTTTA 51193184 GGGTTTA 1 GGGTTTA 51193191 GGGTTTA 1 GGGTTTA 51193198 GGGTTTA 1 GGGTTTA 51193205 GGGTTTA 1 GGGTTTA 51193212 GGGTTTA 1 GGGTTTA 51193219 GGGTTTA 1 GGGTTTA 51193226 GGGTTTA 1 GGGTTTA 51193233 GGGTTTA 1 GGGTTTA 51193240 GGGTTTA 1 GGGTTTA 51193247 GGGTTTA 1 GGGTTTA 51193254 GGGTTTA 1 GGGTTTA 51193261 GGGTTTA 1 GGGTTTA 51193268 GGGTTTA 1 GGGTTTA 51193275 GGGTTTA 1 GGGTTTA 51193282 GGGTTTA 1 GGGTTTA 51193289 GGGTTTA 1 GGGTTTA 51193296 GGGTTTA 1 GGGTTTA 51193303 GGGTTTA 1 GGGTTTA 51193310 GGGTTTA 1 GGGTTTA 51193317 GGGTTTA 1 GGGTTTA 51193324 GGGTTTA 1 GGGTTTA 51193331 GGGTTTA 1 GGGTTTA 51193338 GGGTTTA 1 GGGTTTA 51193345 GGGTTTA 1 GGGTTTA 51193352 GGGTTTA 1 GGGTTTA 51193359 GGGTTTA 1 GGGTTTA 51193366 GGGTTTA 1 GGGTTTA 51193373 GGGTTTA 1 GGGTTTA 51193380 GGGTTTA 1 GGGTTTA 51193387 GGGTTTA 1 GGGTTTA 51193394 GGGTTTA 1 GGGTTTA 51193401 GGGTTTA 1 GGGTTTA 51193408 GGGTTTA 1 GGGTTTA 51193415 GGGTTTA 1 GGGTTTA 51193422 GGGTTTA 1 GGGTTTA 51193429 GGGTTTA 1 GGGTTTA 51193436 GGGTTTA 1 GGGTTTA 51193443 GGGTTTA 1 GGGTTTA 51193450 GGGTTTA 1 GGGTTTA 51193457 GGGTTTA 1 GGGTTTA 51193464 GGGTTTA 1 GGGTTTA 51193471 GGGTTTA 1 GGGTTTA 51193478 GGGTTTA 1 GGGTTTA 51193485 GGGTTTA 1 GGGTTTA 51193492 GGGTTTA 1 GGGTTTA 51193499 GGGTTTA 1 GGGTTTA 51193506 GGGTTTA 1 GGGTTTA 51193513 GGGTTTA 1 GGGTTTA 51193520 GGGTTTA 1 GGGTTTA 51193527 GGGTTTA 1 GGGTTTA 51193534 GGGTTTA 1 GGGTTTA 51193541 GGGTTTA 1 GGGTTTA 51193548 GGGTTTA 1 GGGTTTA 51193555 GGGTTTA 1 GGGTTTA 51193562 GGGTTTA 1 GGGTTTA 51193569 GGGTTTA 1 GGGTTTA 51193576 GGGTTTA 1 GGGTTTA 51193583 GGGTTTA 1 GGGTTTA 51193590 GGGTTTA 1 GGGTTTA 51193597 GGGTTTA 1 GGGTTTA 51193604 GGGTTTA 1 GGGTTTA 51193611 GGGTTTA 1 GGGTTTA 51193618 GGGTTTA 1 GGGTTTA 51193625 GGGTTTA 1 GGGTTTA 51193632 GGGTTTA 1 GGGTTTA 51193639 GGGTTTA 1 GGGTTTA 51193646 GGGTTTA 1 GGGTTTA 51193653 GGGTTTA 1 GGGTTTA 51193660 GGGTTTA 1 GGGTTTA 51193667 GGGTTTA 1 GGGTTTA 51193674 GGGTTTA 1 GGGTTTA 51193681 GGGTTTA 1 GGGTTTA 51193688 GGGTTTA 1 GGGTTTA 51193695 GGGTTTA 1 GGGTTTA 51193702 GGGTTTA 1 GGGTTTA 51193709 GGGTTTA 1 GGGTTTA 51193716 GGGTTTA 1 GGGTTTA 51193723 GGGTTTA 1 GGGTTTA 51193730 GGGTTTA 1 GGGTTTA 51193737 GGGTTTA 1 GGGTTTA 51193744 GGGTTTA 1 GGGTTTA 51193751 GGGTTTA 1 GGGTTTA 51193758 GGGTTTA 1 GGGTTTA 51193765 GGGTTTA 1 GGGTTTA 51193772 GGGTTTA 1 GGGTTTA 51193779 GGGTTTA 1 GGGTTTA 51193786 GGGTTTA 1 GGGTTTA 51193793 GGGTTTA 1 GGGTTTA 51193800 GGGTTTA 1 GGGTTTA 51193807 GGGTTTA 1 GGGTTTA 51193814 GGGTTTA 1 GGGTTTA 51193821 GGGTTTA 1 GGGTTTA 51193828 GGGTTTA 1 GGGTTTA 51193835 GGGTTTA 1 GGGTTTA 51193842 GGGTTTA 1 GGGTTTA 51193849 GGGTTTA 1 GGGTTTA 51193856 GGGTTTA 1 GGGTTTA 51193863 GGGTTTA 1 GGGTTTA 51193870 GGGTTTA 1 GGGTTTA 51193877 GGGTTTA 1 GGGTTTA 51193884 GGGTTTA 1 GGGTTTA 51193891 GGGTTTA 1 GGGTTTA 51193898 GGGTTTA 1 GGGTTTA 51193905 GGGTTTA 1 GGGTTTA 51193912 GGGTTTA 1 GGGTTTA 51193919 GGGTTTA 1 GGGTTTA 51193926 GGGTTTA 1 GGGTTTA 51193933 GGGTTTA 1 GGGTTTA 51193940 GGGTTTA 1 GGGTTTA 51193947 GGGTTTA 1 GGGTTTA 51193954 GGGTTTA 1 GGGTTTA 51193961 GGGTTTA 1 GGGTTTA 51193968 GGGTTTA 1 GGGTTTA 51193975 GGGTTTA 1 GGGTTTA 51193982 GGGTTTA 1 GGGTTTA 51193989 GGGTTTA 1 GGGTTTA 51193996 GGGTTTA 1 GGGTTTA 51194003 GGGTTTA 1 GGGTTTA 51194010 GGGTTTA 1 GGGTTTA 51194017 GGGTTTA 1 GGGTTTA 51194024 GGGTTTA 1 GGGTTTA 51194031 GGGTTTA 1 GGGTTTA 51194038 GGGTTTA 1 GGGTTTA 51194045 GGGTTTA 1 GGGTTTA 51194052 GGGTTTA 1 GGGTTTA 51194059 GGGTTTA 1 GGGTTTA 51194066 GGGTTTA 1 GGGTTTA 51194073 GGGTTTA 1 GGGTTTA 51194080 GGGTTTA 1 GGGTTTA 51194087 GGGTTTA 1 GGGTTTA 51194094 GGGTTTA 1 GGGTTTA 51194101 GGGTTTA 1 GGGTTTA 51194108 GGGTTTA 1 GGGTTTA 51194115 GGGTTTA 1 GGGTTTA 51194122 GGGTTTA 1 GGGTTTA 51194129 GGGTTTA 1 GGGTTTA 51194136 GGGTTTA 1 GGGTTTA 51194143 GGGTTTA 1 GGGTTTA 51194150 GGGTTTA 1 GGGTTTA 51194157 GGGTTTA 1 GGGTTTA 51194164 GGGTTTA 1 GGGTTTA 51194171 GGGTTTA 1 GGGTTTA 51194178 GGGTTTA 1 GGGTTTA 51194185 GGGTTTA 1 GGGTTTA 51194192 GGGTTTA 1 GGGTTTA 51194199 GGGTTTA 1 GGGTTTA 51194206 GGGTTTA 1 GGGTTTA 51194213 GGGTTTA 1 GGGTTTA 51194220 GGGTTTA 1 GGGTTTA 51194227 GGGTTTA 1 GGGTTTA 51194234 GGGTTTA 1 GGGTTTA 51194241 GGGTTTA 1 GGGTTTA 51194248 GGGTTTA 1 GGGTTTA 51194255 GGGTTTA 1 GGGTTTA 51194262 GGGTTTA 1 GGGTTTA 51194269 GGGTTTA 1 GGGTTTA 51194276 GGGTTTA 1 GGGTTTA 51194283 GGGTTTA 1 GGGTTTA 51194290 GGGTTTA 1 GGGTTTA 51194297 GGGTTTA 1 GGGTTTA 51194304 GGGTTTA 1 GGGTTTA 51194311 GGGTTTA 1 GGGTTTA 51194318 GGGTTTA 1 GGGTTTA 51194325 GGGTTTA 1 GGGTTTA 51194332 GGGTTTA 1 GGGTTTA 51194339 GGGTTTA 1 GGGTTTA 51194346 GGGTTTA 1 GGGTTTA 51194353 GGGTTTA 1 GGGTTTA 51194360 GGGTTTA 1 GGGTTTA 51194367 GGGTTTA 1 GGGTTTA 51194374 GGGTTTA 1 GGGTTTA 51194381 GGGTTTA 1 GGGTTTA 51194388 GGGTTTA 1 GGGTTTA 51194395 GGGTTTA 1 GGGTTTA 51194402 GGGTTTA 1 GGGTTTA 51194409 GGGTTTA 1 GGGTTTA 51194416 GGGTTTA 1 GGGTTTA 51194423 GGGTTTA 1 GGGTTTA 51194430 GGGTTTA 1 GGGTTTA 51194437 GGGTTTA 1 GGGTTTA 51194444 GGGTTTA 1 GGGTTTA 51194451 GGGTTTA 1 GGGTTTA 51194458 GGG-TTA 1 GGGTTTA 51194464 GGGTTTA 1 GGGTTTA 51194471 GGGTTTA 1 GGGTTTA 51194478 GGGTTTA 1 GGGTTTA 51194485 GGGTTTA 1 GGGTTTA 51194492 GGGTTTA 1 GGGTTTA 51194499 GGGTTTA 1 GGGTTTA 51194506 GGGTTTA 1 GGGTTTA 51194513 GGGTTTA 1 GGGTTTA 51194520 GGGTTTA 1 GGGTTTA 51194527 GGGTTTA 1 GGGTTTA 51194534 GGGTTTA 1 GGGTTTA 51194541 GGGTTTA 1 GGGTTTA 51194548 GGGTTTA 1 GGGTTTA 51194555 GGGTTTA 1 GGGTTTA 51194562 GGGTTTA 1 GGGTTTA 51194569 GGGTTTA 1 GGGTTTA 51194576 GGGTTTA 1 GGGTTTA 51194583 GGGTTTA 1 GGGTTTA 51194590 GGGTTTA 1 GGGTTTA 51194597 GGGTTTA 1 GGGTTTA 51194604 GGGTTTA 1 GGGTTTA 51194611 GGGTTTA 1 GGGTTTA 51194618 GGGTTTA 1 GGGTTTA 51194625 GGGTTTA 1 GGGTTTA 51194632 GGG-TT- 1 GGGTTTA 51194637 GGGTTTA 1 GGGTTTA 51194644 GGGTTTA 1 GGGTTTA 51194651 GGGTTTA 1 GGGTTTA 51194658 GGGTTTA 1 GGGTTTA 51194665 GGGTTTA 1 GGGTTTA 51194672 GGGTTTA 1 GGGTTTA 51194679 GGGTTTA 1 GGGTTTA 51194686 GGGTTTA 1 GGGTTTA 51194693 GGGTTTA 1 GGGTTTA 51194700 GGGTTTA 1 GGGTTTA 51194707 GGGTTTA 1 GGGTTTA 51194714 GGGTTTA 1 GGGTTTA 51194721 GGGTTTA 1 GGGTTTA 51194728 GGGTTTA 1 GGGTTTA 51194735 GGGTTTA 1 GGGTTTA 51194742 GGGTTTA 1 GGGTTTA 51194749 GGGTTTA 1 GGGTTTA 51194756 GGGTTTA 1 GGGTTTA 51194763 GGGTTTA 1 GGGTTTA 51194770 GGGTTTA 1 GGGTTTA 51194777 GGGTTTA 1 GGGTTTA 51194784 GGGTTTA 1 GGGTTTA 51194791 GGGTTTA 1 GGGTTTA 51194798 GGGTTTA 1 GGGTTTA 51194805 GGGTTTA 1 GGGTTTA 51194812 GGGTTTA 1 GGGTTTA 51194819 GGGTTTA 1 GGGTTTA 51194826 GGGTTTTA 1 GGG-TTTA 51194834 GGGTTTA 1 GGGTTTA 51194841 GGGTTTA 1 GGGTTTA 51194848 GGGTTTA 1 GGGTTTA 51194855 GGGTTTA 1 GGGTTTA 51194862 GGGTTTA 1 GGGTTTA 51194869 GGGTTTA 1 GGGTTTA 51194876 GGGTTTTA 1 GGG-TTTA 51194884 GGGTTTA 1 GGGTTTA 51194891 GGGTTTA 1 GGGTTTA 51194898 GGGTTTA 1 GGGTTTA 51194905 GGGTTTA 1 GGGTTTA 51194912 GGGTTTA 1 GGGTTTA 51194919 GGGTTTA 1 GGGTTTA 51194926 GGGTTTA 1 GGGTTTA 51194933 GGGTTTA 1 GGGTTTA 51194940 GGGTTTA 1 GGGTTTA 51194947 GGGTTTA 1 GGGTTTA 51194954 GGGTTTA 1 GGGTTTA 51194961 GGGTTTTA 1 GGG-TTTA 51194969 GGGTTTA 1 GGGTTTA 51194976 GGGTTTA 1 GGGTTTA 51194983 GGGTTTA 1 GGGTTTA 51194990 GGGTTTA 1 GGGTTTA 51194997 GGGTTTA 1 GGGTTTA 51195004 GGGTTTA 1 GGGTTTA 51195011 GGGTTTA 1 GGGTTTA 51195018 GGGTTTA 1 GGGTTTA 51195025 GGGTTTA 1 GGGTTTA 51195032 GGGTTTA 1 GGGTTTA 51195039 GGG-TTA 1 GGGTTTA 51195045 GGGTTTA 1 GGGTTTA 51195052 GGGTTTA 1 GGGTTTA 51195059 GGGTTTA 1 GGGTTTA 51195066 GGGTTTA 1 GGGTTTA 51195073 GGGTTTA 1 GGGTTTA 51195080 GGGTTTA 1 GGGTTTA 51195087 GGGTTTA 1 GGGTTTA 51195094 GGGTTTA 1 GGGTTTA 51195101 GGGTTTA 1 GGGTTTA 51195108 GGGTTTA 1 GGGTTTA 51195115 GGGTTTA 1 GGGTTTA 51195122 GGG-TTA 1 GGGTTTA 51195128 GGGTTTA 1 GGGTTTA 51195135 GGGTTTA 1 GGGTTTA 51195142 GGGTTTA 1 GGGTTTA 51195149 -GG-TTA 1 GGGTTTA 51195154 GGGTTTA 1 GGGTTTA 51195161 GGGTTTA 1 GGGTTTA 51195168 GGGTTTA 1 GGGTTTA 51195175 GGGTTTA 1 GGGTTTA 51195182 GGGTTTA 1 GGGTTTA 51195189 GGGTTTA 1 GGGTTTA 51195196 GGGTTTA 1 GGGTTTA 51195203 GGGTTTA 1 GGGTTTA 51195210 GGGTTTA 1 GGGTTTA 51195217 GGGTTTA 1 GGGTTTA 51195224 GGGTTTA 1 GGGTTTA 51195231 GGGTTTA 1 GGGTTTA 51195238 GGGTTTA 1 GGGTTTA 51195245 GGGTTTA 1 GGGTTTA 51195252 GGGTTTA 1 GGGTTTA 51195259 GGGTTTA 1 GGGTTTA 51195266 GGGTTTA 1 GGGTTTA 51195273 GGGTTTA 1 GGGTTTA 51195280 GGGTTTA 1 GGGTTTA 51195287 GGGTTTA 1 GGGTTTA 51195294 GGGTTTA 1 GGGTTTA 51195301 GGGTTTA 1 GGGTTTA 51195308 GGGTTTA 1 GGGTTTA 51195315 GGGTTTTA 1 GGG-TTTA 51195323 GGGTTTA 1 GGGTTTA 51195330 GGGTTTA 1 GGGTTTA 51195337 GGGTTTA 1 GGGTTTA 51195344 GGGTTTA 1 GGGTTTA 51195351 GGGTTTTA 1 GGG-TTTA 51195359 GGGTTTA 1 GGGTTTA 51195366 GGGTTTA 1 GGGTTTA 51195373 GGGTTTA 1 GGGTTTA 51195380 GGGTTTA 1 GGGTTTA 51195387 GGGTTTA 1 GGGTTTA 51195394 GGGTTTA 1 GGGTTTA 51195401 GGGTTTA 1 GGGTTTA 51195408 GGGTTTA 1 GGGTTTA 51195415 GGGTTTA 1 GGGTTTA 51195422 GGGTTTA 1 GGGTTTA 51195429 GGGTTTA 1 GGGTTTA 51195436 GGGTTT- 1 GGGTTTA 51195442 GGGTTTA 1 GGGTTTA 51195449 GGGTTTA 1 GGGTTTA 51195456 GGGTTTA 1 GGGTTTA 51195463 GGGTTTA 1 GGGTTTA 51195470 GGGTTTA 1 GGGTTTA 51195477 GGGTTTA 1 GGGTTTA 51195484 GGGTTTA 1 GGGTTTA 51195491 GGGTTTA 1 GGGTTTA 51195498 GGGTTTA 1 GGGTTTA 51195505 GGGTTTA 1 GGGTTTA 51195512 GGGTTTA 1 GGGTTTA 51195519 GGGTTTA 1 GGGTTTA 51195526 GGGTTTA 1 GGGTTTA 51195533 -GGTTTA 1 GGGTTTA 51195539 GGG-TTA 1 GGGTTTA 51195545 GGGTTTA 1 GGGTTTA 51195552 GGGTTTA 1 GGGTTTA 51195559 GGGTTTA 1 GGGTTTA 51195566 GGGTTTA 1 GGGTTTA 51195573 GGGTTTA 1 GGGTTTA 51195580 GGGTTTA 1 GGGTTTA 51195587 GGGTTTA 1 GGGTTTA 51195594 GGGTTTA 1 GGGTTTA 51195601 GGGTTTA 1 GGGTTTA 51195608 GGGTTTA 1 GGGTTTA 51195615 GGGTTTA 1 GGGTTTA 51195622 GGGTTTA 1 GGGTTTA 51195629 GGGTTTA 1 GGGTTTA 51195636 GGGTTTA 1 GGGTTTA 51195643 GGGTTTA 1 GGGTTTA 51195650 GGGTTTA 1 GGGTTTA 51195657 GGGTTTA 1 GGGTTTA 51195664 GGGTTTA 1 GGGTTTA 51195671 GGGTTTA 1 GGGTTTA 51195678 GGGTTTA 1 GGGTTTA 51195685 GGGTTTA 1 GGGTTTA 51195692 GGGTTTA 1 GGGTTTA 51195699 GGGTTTA 1 GGGTTTA 51195706 GGGTTTA 1 GGGTTTA 51195713 GGGTTTA 1 GGGTTTA 51195720 GGGTTTA 1 GGGTTTA 51195727 GGGTTTA 1 GGGTTTA 51195734 GGGTTTA 1 GGGTTTA 51195741 GGGTTTA 1 GGGTTTA 51195748 GGGTTTA 1 GGGTTTA 51195755 GGGTTTA 1 GGGTTTA 51195762 -GGTTTA 1 GGGTTTA 51195768 GGGTTTA 1 GGGTTTA 51195775 GGGTTTA 1 GGGTTTA 51195782 GGGTTTA 1 GGGTTTA 51195789 GGGTTTA 1 GGGTTTA 51195796 GGG-TTA 1 GGGTTTA 51195802 -GGTTTA 1 GGGTTTA 51195808 GGGTTTA 1 GGGTTTA 51195815 GGGTTTA 1 GGGTTTA 51195822 GGGTTTA 1 GGGTTTA 51195829 GGGTTTA 1 GGGTTTA 51195836 GGGTTTA 1 GGGTTTA 51195843 GGG--TA 1 GGGTTTA 51195848 GGGTTTA 1 GGGTTTA 51195855 GGG-TTA 1 GGGTTTA 51195861 GGGTTTA 1 GGGTTTA 51195868 GGGTTTA 1 GGGTTTA 51195875 GGGTTTA 1 GGGTTTA 51195882 GGGTTTA 1 GGGTTTA 51195889 GGGTTTA 1 GGGTTTA 51195896 GGGTTTA 1 GGGTTTA 51195903 GGGTTTA 1 GGGTTTA 51195910 GGGTTTA 1 GGGTTTA 51195917 GGGTTTA 1 GGGTTTA 51195924 GGGTTTA 1 GGGTTTA 51195931 GGGTTTA 1 GGGTTTA 51195938 GGGTTTA 1 GGGTTTA 51195945 GGGTTTA 1 GGGTTTA 51195952 GGGTTTA 1 GGGTTTA 51195959 GGGTTTA 1 GGGTTTA 51195966 GGGTTTA 1 GGGTTTA 51195973 GGGTTTA 1 GGGTTTA 51195980 GGGTTTA 1 GGGTTTA 51195987 GGGTTTA 1 GGGTTTA 51195994 GGGTTTA 1 GGGTTTA 51196001 GGGTTTA 1 GGGTTTA 51196008 GGGTTTA 1 GGGTTTA 51196015 GGGTTTA 1 GGGTTTA 51196022 GGGTTTA 1 GGGTTTA 51196029 GGGTTTA 1 GGGTTTA 51196036 GGGTTTA 1 GGGTTTA 51196043 GGGTTTA 1 GGGTTTA 51196050 GGGTTTA 1 GGGTTTA 51196057 GGGTTTA 1 GGGTTTA 51196064 GGGTTTA 1 GGGTTTA 51196071 GGGTTTA 1 GGGTTTA 51196078 GGGTTTA 1 GGGTTTA 51196085 GGGTTTA 1 GGGTTTA 51196092 GGGTTTA 1 GGGTTTA 51196099 GGGTTTA 1 GGGTTTA 51196106 GGGTTTA 1 GGGTTTA 51196113 GGGTTTA 1 GGGTTTA 51196120 GGGTTTA 1 GGGTTTA 51196127 GGGTTTA 1 GGGTTTA 51196134 GGGTTTA 1 GGGTTTA 51196141 GGGTTTA 1 GGGTTTA 51196148 GGGTTTA 1 GGGTTTA 51196155 GGGTTTA 1 GGGTTTA 51196162 GGGTTTA 1 GGGTTTA 51196169 GGGTTTA 1 GGGTTTA 51196176 GGGTTTA 1 GGGTTTA 51196183 GGGTTTA 1 GGGTTTA 51196190 GGGTTTA 1 GGGTTTA 51196197 GGGTTTA 1 GGGTTTA 51196204 GGGTTTA 1 GGGTTTA 51196211 GGGTTTA 1 GGGTTTA 51196218 GGGTTTA 1 GGGTTTA 51196225 GGGTTTA 1 GGGTTTA 51196232 GGGTTTA 1 GGGTTTA 51196239 GGGTTTA 1 GGGTTTA 51196246 GGGTTTA 1 GGGTTTA 51196253 GGGTTTA 1 GGGTTTA 51196260 GGGTTTA 1 GGGTTTA 51196267 GGGTTTA 1 GGGTTTA 51196274 GGGTTTA 1 GGGTTTA 51196281 GGGTTTA 1 GGGTTTA 51196288 GGGTTTA 1 GGGTTTA 51196295 GGGTTTA 1 GGGTTTA 51196302 GGGTTTA 1 GGGTTTA 51196309 GGGTTTA 1 GGGTTTA 51196316 GGGTTTA 1 GGGTTTA 51196323 GGGTTTA 1 GGGTTTA 51196330 GGGTTTA 1 GGGTTTA 51196337 GGGTTTA 1 GGGTTTA 51196344 GGGTTTA 1 GGGTTTA 51196351 GGGTTTA 1 GGGTTTA 51196358 GGGTTTA 1 GGGTTTA 51196365 GGGTTTA 1 GGGTTTA 51196372 GGGTTTA 1 GGGTTTA 51196379 GGGTTTA 1 GGGTTTA 51196386 GGGTTTA 1 GGGTTTA 51196393 GGGTTTA 1 GGGTTTA 51196400 GGGTTTTA 1 GGG-TTTA 51196408 GGGTTTA 1 GGGTTTA 51196415 GGGTTTA 1 GGGTTTA 51196422 GGGTTTA 1 GGGTTTA 51196429 GGGTTTA 1 GGGTTTA 51196436 GGGTTTA 1 GGGTTTA 51196443 GGG-TT- 1 GGGTTTA 51196448 GGGTTTA 1 GGGTTTA 51196455 GGGTTTA 1 GGGTTTA 51196462 GGGTTTA 1 GGGTTTA 51196469 GGGTTTA 1 GGGTTTA 51196476 GGGTTTA 1 GGGTTTA 51196483 GGGTTTA 1 GGGTTTA 51196490 GGGTTTA 1 GGGTTTA 51196497 GGGTTTA 1 GGGTTTA 51196504 GGGTTTA 1 GGGTTTA 51196511 GGGTTTA 1 GGGTTTA 51196518 GGGTTTA 1 GGGTTTA 51196525 GGGTTTA 1 GGGTTTA 51196532 GGGTTTA 1 GGGTTTA 51196539 GGGTTTA 1 GGGTTTA 51196546 GGGTTTA 1 GGGTTTA 51196553 GGGTTTA 1 GGGTTTA 51196560 GGGTTTA 1 GGGTTTA 51196567 GGGTTTA 1 GGGTTTA 51196574 GGGTTTA 1 GGGTTTA 51196581 GGGTTTA 1 GGGTTTA 51196588 GGGTTTA 1 GGGTTTA 51196595 GGGTTTTA 1 GGG-TTTA 51196603 GGGTTTA 1 GGGTTTA 51196610 GGGTTTA 1 GGGTTTA 51196617 GGGTTTA 1 GGGTTTA 51196624 GGGTTTA 1 GGGTTTA 51196631 GGGTTTA 1 GGGTTTA 51196638 GGGTTTA 1 GGGTTTA 51196645 GGGTTTA 1 GGGTTTA * 51196652 GGGTTTT 1 GGGTTTA 51196659 GGGTTTA 1 GGGTTTA 51196666 GGGTTTA 1 GGGTTTA 51196673 GGGTTTA 1 GGGTTTA 51196680 GGGTTTA 1 GGGTTTA 51196687 GGGTTTA 1 GGGTTTA 51196694 GGGTTTA 1 GGGTTTA 51196701 GGGTTTA 1 GGGTTTA 51196708 -GGTTTA 1 GGGTTTA 51196714 GGGTTTA 1 GGGTTTA 51196721 GGGTTTA 1 GGGTTTA 51196728 GGGTTTTTA 1 GGG--TTTA 51196737 GGGTTTA 1 GGGTTTA 51196744 GGGTTTA 1 GGGTTTA 51196751 GGGTTTA 1 GGGTTTA 51196758 GGGTTTA 1 GGGTTTA 51196765 GGGTTTA 1 GGGTTTA 51196772 GGGTTTA 1 GGGTTTA 51196779 GGGTTTA 1 GGGTTTA 51196786 GGGTTTA 1 GGGTTTA 51196793 GGGTTTA 1 GGGTTTA 51196800 GGGTTTA 1 GGGTTTA 51196807 GGGTTTA 1 GGGTTTA 51196814 GGGTTTA 1 GGGTTTA 51196821 GGGTTTA 1 GGGTTTA 51196828 GGG-TTA 1 GGGTTTA 51196834 GGGTTTA 1 GGGTTTA 51196841 GGGTTTA 1 GGGTTTA 51196848 -GGTTTA 1 GGGTTTA 51196854 GGGTTTA 1 GGGTTTA 51196861 GGGTTTA 1 GGGTTTA 51196868 GGGTTTA 1 GGGTTTA 51196875 GGGTTTA 1 GGGTTTA 51196882 GGGTTTA 1 GGGTTTA 51196889 GGGTTTA 1 GGGTTTA 51196896 GGGTTTA 1 GGGTTTA 51196903 GGGTTTA 1 GGGTTTA 51196910 GGGTTTA 1 GGGTTTA 51196917 GGGTTTA 1 GGGTTTA 51196924 GGGTTTA 1 GGGTTTA 51196931 GGGTTTA 1 GGGTTTA 51196938 GGGTTTA 1 GGGTTTA 51196945 GGGTTTA 1 GGGTTTA 51196952 GGGTTTA 1 GGGTTTA 51196959 GGGTTTA 1 GGGTTTA 51196966 GGGTTTA 1 GGGTTTA 51196973 GGGTTTA 1 GGGTTTA 51196980 GGGTTTA 1 GGGTTTA 51196987 GGGTTTA 1 GGGTTTA 51196994 GGGTTTA 1 GGGTTTA 51197001 GGGTTTA 1 GGGTTTA 51197008 GGGTTTA 1 GGGTTTA 51197015 GGGTTTTA 1 GGG-TTTA 51197023 GGGTTTA 1 GGGTTTA 51197030 GGGTTTA 1 GGGTTTA 51197037 GGGTTTA 1 GGGTTTA 51197044 GGGTTTA 1 GGGTTTA 51197051 GGGTTTA 1 GGGTTTA 51197058 GGGTTTA 1 GGGTTTA 51197065 GGGTTTA 1 GGGTTTA 51197072 GGGTTTA 1 GGGTTTA 51197079 GGGTTTA 1 GGGTTTA 51197086 GGGTTTA 1 GGGTTTA 51197093 GGGTTTA 1 GGGTTTA 51197100 GGGTTTA 1 GGGTTTA 51197107 GGGTTTA 1 GGGTTTA 51197114 GGGTTTA 1 GGGTTTA 51197121 GGGTTTA 1 GGGTTTA 51197128 GGGTTTA 1 GGGTTTA 51197135 GGGTTTA 1 GGGTTTA 51197142 GGGTTTA 1 GGGTTTA 51197149 GGGTTTA 1 GGGTTTA 51197156 GGGTTTA 1 GGGTTTA 51197163 GGGTTTA 1 GGGTTTA 51197170 GGGTTTA 1 GGGTTTA 51197177 GGGTTTA 1 GGGTTTA 51197184 GGGTTTA 1 GGGTTTA 51197191 GGGTTTA 1 GGGTTTA 51197198 GGGTTTA 1 GGGTTTA 51197205 GGGTTTA 1 GGGTTTA 51197212 GGGTTTA 1 GGGTTTA 51197219 GGGTTTA 1 GGGTTTA 51197226 GGGTTTA 1 GGGTTTA 51197233 GGGTTTA 1 GGGTTTA 51197240 GGGTTTA 1 GGGTTTA 51197247 GGGTTTA 1 GGGTTTA 51197254 GGGTTTA 1 GGGTTTA 51197261 GGGTTTA 1 GGGTTTA 51197268 GGGTTTA 1 GGGTTTA 51197275 GGGTTTA 1 GGGTTTA 51197282 GGGTTTA 1 GGGTTTA 51197289 GGGTTTA 1 GGGTTTA 51197296 GGGTTTA 1 GGGTTTA 51197303 GGGTTTA 1 GGGTTTA 51197310 GGGTTTA 1 GGGTTTA 51197317 GGGTTTA 1 GGGTTTA 51197324 GGGTTTA 1 GGGTTTA 51197331 GGGTTTA 1 GGGTTTA 51197338 GGGTTTA 1 GGGTTTA 51197345 -GGTTTA 1 GGGTTTA 51197351 GGGTTTA 1 GGGTTTA 51197358 GGGTTTA 1 GGGTTTA 51197365 GGGTTTA 1 GGGTTTA 51197372 GGGTTTA 1 GGGTTTA 51197379 GGGTTTA 1 GGGTTTA 51197386 GGGTTTA 1 GGGTTTA 51197393 GGGTTTA 1 GGGTTTA 51197400 GGGTTTA 1 GGGTTTA 51197407 GGGTTTA 1 GGGTTTA 51197414 GGGTTTA 1 GGGTTTA 51197421 GGGTTTA 1 GGGTTTA 51197428 GGGTTTA 1 GGGTTTA 51197435 GGGTTTA 1 GGGTTTA 51197442 GGGTTTTA 1 GGG-TTTA 51197450 GGGTTTA 1 GGGTTTA 51197457 GGGTTTA 1 GGGTTTA 51197464 GGGTTTA 1 GGGTTTA 51197471 GGGTTTA 1 GGGTTTA 51197478 GGGTTTTA 1 GGG-TTTA 51197486 GGGTTTA 1 GGGTTTA 51197493 GGGTTTA 1 GGGTTTA 51197500 GGGTTTA 1 GGGTTTA 51197507 GGGTTTA 1 GGGTTTA 51197514 GGGTTTA 1 GGGTTTA 51197521 GGGTTTA 1 GGGTTTA 51197528 GGGTTTA 1 GGGTTTA 51197535 GGGTTTA 1 GGGTTTA 51197542 GGGTTTA 1 GGGTTTA 51197549 GGGTTT- 1 GGGTTTA 51197555 GGGTTTA 1 GGGTTTA 51197562 GGGTTTA 1 GGGTTTA 51197569 GGGTTTA 1 GGGTTTA 51197576 GGGTTTA 1 GGGTTTA 51197583 GGGTTTA 1 GGGTTTA 51197590 GGGTTTA 1 GGGTTTA 51197597 GGGTTTA 1 GGGTTTA 51197604 GGGTTTA 1 GGGTTTA 51197611 GGGTTTA 1 GGGTTTA 51197618 GGGTTTA 1 GGGTTTA 51197625 GGGTTTA 1 GGGTTTA 51197632 GGGTTTA 1 GGGTTTA 51197639 GGGTTTA 1 GGGTTTA 51197646 GGGTTTA 1 GGGTTTA 51197653 GGGTTTA 1 GGGTTTA 51197660 GGGTTTA 1 GGGTTTA 51197667 GGGTTTA 1 GGGTTTA 51197674 GGGTTTA 1 GGGTTTA 51197681 GGGTTTA 1 GGGTTTA 51197688 GGGTTTA 1 GGGTTTA 51197695 GGGTTTA 1 GGGTTTA 51197702 GGGTTTAA 1 GGGTTT-A 51197710 GGGTTTA 1 GGGTTTA 51197717 GGGT 1 GGGT 51197721 NNNNNNNNNN Statistics Matches: 10744, Mismatches: 10, Indels: 152 0.99 0.00 0.01 Matches are distributed among these distances: 4 4 0.00 5 20 0.00 6 134 0.01 7 10279 0.96 8 290 0.03 9 17 0.00 ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43 Consensus pattern (7 bp): GGGTTTA Found at i:51199901 original size:15 final size:15 Alignment explanation

Indices: 51199881--51199910 Score: 60 Period size: 15 Copynumber: 2.0 Consensus size: 15 51199871 GGACACCATG 51199881 TAGACAAGAGAGCTA 1 TAGACAAGAGAGCTA 51199896 TAGACAAGAGAGCTA 1 TAGACAAGAGAGCTA 51199911 CGTGAAAGAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.47, C:0.13, G:0.27, T:0.13 Consensus pattern (15 bp): TAGACAAGAGAGCTA Found at i:51199959 original size:86 final size:86 Alignment explanation

Indices: 51199814--51199981 Score: 336 Period size: 86 Copynumber: 2.0 Consensus size: 86 51199804 CCCATGTATT 51199814 CAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA 1 CAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA 51199879 TGTAGACAAGAGAGCTATAGA 66 TGTAGACAAGAGAGCTATAGA 51199900 CAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA 1 CAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA 51199965 TGTAGACAAGAGAGCTA 66 TGTAGACAAGAGAGCTA 51199982 CGAGACAAAT Statistics Matches: 82, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 86 82 1.00 ACGTcount: A:0.37, C:0.17, G:0.28, T:0.18 Consensus pattern (86 bp): CAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA TGTAGACAAGAGAGCTATAGA Found at i:51202055 original size:14 final size:15 Alignment explanation

Indices: 51202006--51202055 Score: 66 Period size: 15 Copynumber: 3.4 Consensus size: 15 51201996 GTATCTTGAG * 51202006 TTTCTTTATCCTGGA 1 TTTCTTTATTCTGGA * 51202021 TCTCTTTATTCTGGA 1 TTTCTTTATTCTGGA * 51202036 TTTCTTTATTC-GGT 1 TTTCTTTATTCTGGA 51202050 TTTCTT 1 TTTCTT 51202056 GTTATCTTTG Statistics Matches: 31, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 14 8 0.26 15 23 0.74 ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60 Consensus pattern (15 bp): TTTCTTTATTCTGGA Found at i:51203465 original size:46 final size:46 Alignment explanation

Indices: 51203415--51203590 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 51203405 TATTTGGGCA 51203415 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * * * 51203461 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG * 51203508 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * 51203554 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 51203591 GCGGGTTACA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 4 0.04 45 2 0.02 46 67 0.60 47 33 0.29 48 2 0.02 50 4 0.04 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG Found at i:51203570 original size:93 final size:93 Alignment explanation

Indices: 51203411--51203582 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 51203401 TGGATATTTG * * 51203411 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 51203476 TTGAGTCCGAGTTCGTGAGATGTAACTA 66 TTGAGTCCGAGTTCGTGAGATGTAACTA * 51203504 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 51203569 TTGAGTCCGAGTTC 66 TTGAGTCCGAGTTC 51203583 ACTTATGGGC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGTGAGATGTAACTA Found at i:51207259 original size:46 final size:46 Alignment explanation

Indices: 51207203--51207378 Score: 205 Period size: 46 Copynumber: 3.8 Consensus size: 46 51207193 TGTTTGGGCA * 51207203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG * * * * 51207249 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG * * 51207296 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG * * * 51207342 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 51207379 GCGGGTTACA Statistics Matches: 109, Mismatches: 14, Indels: 14 0.80 0.10 0.10 Matches are distributed among these distances: 43 6 0.06 45 3 0.03 46 63 0.58 47 29 0.27 48 3 0.03 50 5 0.05 ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG Found at i:51207358 original size:93 final size:93 Alignment explanation

Indices: 51207199--51207371 Score: 301 Period size: 93 Copynumber: 1.9 Consensus size: 93 51207189 AGGATGTTTG * * * 51207199 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG 51207264 TTGAGTCCGAGTTCGTGAGATGTAACTA 66 TTGAGTCCGAGTTCGTGAGATGTAACTA * * 51207292 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG 51207357 TTGAGTCCGAGTTCG 66 TTGAGTCCGAGTTCG 51207372 CTTATGGGCG Statistics Matches: 75, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGTGAGATGTAACTA Found at i:51210086 original size:14 final size:14 Alignment explanation

Indices: 51210067--51210097 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 51210057 CTTAACGAGA * 51210067 AAGGAAATGACCGT 1 AAGGAAATAACCGT 51210081 AAGGAAATAACCGT 1 AAGGAAATAACCGT 51210095 AAG 1 AAG 51210098 CGAATGGTGT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.48, C:0.13, G:0.26, T:0.13 Consensus pattern (14 bp): AAGGAAATAACCGT Found at i:51213186 original size:27 final size:28 Alignment explanation

Indices: 51213129--51213198 Score: 106 Period size: 27 Copynumber: 2.5 Consensus size: 28 51213119 AAATTTGTAC ** 51213129 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT * 51213157 AGCACTATGTGTGCG-AGCTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT 51213184 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 51213199 GACTTATTAT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 27 24 0.63 28 14 0.37 ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31 Consensus pattern (28 bp): AGCACTAAGTGTGCGAAGCTGATTATAT Found at i:51213207 original size:27 final size:27 Alignment explanation

Indices: 51213129--51213210 Score: 103 Period size: 27 Copynumber: 3.0 Consensus size: 27 51213119 AAATTTGTAC * * 51213129 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGGACTT-ATTATAT * * 51213157 AGCACTATGTGTGC-GAGCTGATTATAT 1 AGCACTAAGTGTGCGGA-CTTATTATAT 51213184 AGCACTAAGTGTGCGGACTTATTATAT 1 AGCACTAAGTGTGCGGACTTATTATAT 51213211 GCTTTTGCAT Statistics Matches: 46, Mismatches: 6, Indels: 5 0.81 0.11 0.09 Matches are distributed among these distances: 27 30 0.65 28 16 0.35 ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34 Consensus pattern (27 bp): AGCACTAAGTGTGCGGACTTATTATAT Found at i:51221111 original size:27 final size:28 Alignment explanation

Indices: 51221054--51221123 Score: 106 Period size: 27 Copynumber: 2.5 Consensus size: 28 51221044 AAATTTGTAC ** 51221054 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT * 51221082 AGCACTATGTGTGCG-AGCTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT 51221109 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 51221124 GACTTATTAT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 27 24 0.63 28 14 0.37 ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31 Consensus pattern (28 bp): AGCACTAAGTGTGCGAAGCTGATTATAT Found at i:51221132 original size:27 final size:27 Alignment explanation

Indices: 51221054--51221135 Score: 103 Period size: 27 Copynumber: 3.0 Consensus size: 27 51221044 AAATTTGTAC * * 51221054 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGGACTT-ATTATAT * * 51221082 AGCACTATGTGTGC-GAGCTGATTATAT 1 AGCACTAAGTGTGCGGA-CTTATTATAT 51221109 AGCACTAAGTGTGCGGACTTATTATAT 1 AGCACTAAGTGTGCGGACTTATTATAT 51221136 GCTTTTGCAT Statistics Matches: 46, Mismatches: 6, Indels: 5 0.81 0.11 0.09 Matches are distributed among these distances: 27 30 0.65 28 16 0.35 ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34 Consensus pattern (27 bp): AGCACTAAGTGTGCGGACTTATTATAT Done.