Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr14 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 244914714 ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31 Warning! 4503000 characters in sequence are not A, C, G, or T File 176 of 770 Found at i:52625622 original size:40 final size:39 Alignment explanation
Indices: 52625577--52625706 Score: 136 Period size: 40 Copynumber: 3.3 Consensus size: 39 52625567 CGGAATATAA 52625577 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC * * * * 52625617 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC * * * * * 52625657 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC 52625697 CCGGATATAA 1 CCGGATATAA 52625707 TTTCCAGCAT Statistics Matches: 72, Mismatches: 14, Indels: 8 0.77 0.15 0.09 Matches are distributed among these distances: 38 1 0.01 40 69 0.96 41 1 0.01 42 1 0.01 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25 Consensus pattern (39 bp): CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC Found at i:52625721 original size:40 final size:40 Alignment explanation
Indices: 52625593--52625744 Score: 148 Period size: 40 Copynumber: 3.8 Consensus size: 40 52625583 ATAACCATGT * * * 52625593 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC- 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA * ** * * 52625633 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 52625673 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 52625713 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT 1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT 52625745 CATTCAATTT Statistics Matches: 91, Mismatches: 17, Indels: 8 0.78 0.15 0.07 Matches are distributed among these distances: 39 2 0.02 40 86 0.95 41 3 0.03 ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA Found at i:52625727 original size:80 final size:80 Alignment explanation
Indices: 52625593--52625742 Score: 198 Period size: 80 Copynumber: 1.9 Consensus size: 80 52625583 ATAACCATGT * 52625593 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC 52625657 CCGGATGTAGCCACTA 65 CCGGATGTAGCCACTA * * * * * 52625673 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG 52625736 CCCGGAT 64 CCCGGAT 52625743 ATCATTCAAT Statistics Matches: 61, Mismatches: 6, Indels: 6 0.84 0.08 0.08 Matches are distributed among these distances: 79 3 0.05 80 57 0.93 81 1 0.02 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27 Consensus pattern (80 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC CGGATGTAGCCACTA Found at i:52633640 original size:40 final size:39 Alignment explanation
Indices: 52633595--52633724 Score: 136 Period size: 40 Copynumber: 3.3 Consensus size: 39 52633585 CGGAATATAA 52633595 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC * * * * 52633635 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC * * * * * 52633675 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC 52633715 CCGGATATAA 1 CCGGATATAA 52633725 TTTCCAGCAT Statistics Matches: 72, Mismatches: 14, Indels: 8 0.77 0.15 0.09 Matches are distributed among these distances: 38 1 0.01 40 69 0.96 41 1 0.01 42 1 0.01 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25 Consensus pattern (39 bp): CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC Found at i:52633739 original size:40 final size:40 Alignment explanation
Indices: 52633611--52633762 Score: 148 Period size: 40 Copynumber: 3.8 Consensus size: 40 52633601 ATAACCATGT * * * 52633611 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC- 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA * ** * * 52633651 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 52633691 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 52633731 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT 1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT 52633763 CATTCAATTT Statistics Matches: 91, Mismatches: 17, Indels: 8 0.78 0.15 0.07 Matches are distributed among these distances: 39 2 0.02 40 86 0.95 41 3 0.03 ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA Found at i:52633745 original size:80 final size:80 Alignment explanation
Indices: 52633611--52633760 Score: 198 Period size: 80 Copynumber: 1.9 Consensus size: 80 52633601 ATAACCATGT * 52633611 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC 52633675 CCGGATGTAGCCACTA 65 CCGGATGTAGCCACTA * * * * * 52633691 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG 52633754 CCCGGAT 64 CCCGGAT 52633761 ATCATTCAAT Statistics Matches: 61, Mismatches: 6, Indels: 6 0.84 0.08 0.08 Matches are distributed among these distances: 79 3 0.05 80 57 0.93 81 1 0.02 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27 Consensus pattern (80 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC CGGATGTAGCCACTA Found at i:52650050 original size:48 final size:49 Alignment explanation
Indices: 52649881--52650058 Score: 193 Period size: 49 Copynumber: 3.7 Consensus size: 49 52649871 GGGATAAGAT * * 52649881 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAA 1 GTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCGAA * * * * * * 52649929 GTCGATGCCAT-TTCCAGGACAGGACTTACACTGACTTTCATATATCGAG 1 GTCGATGCCATGTCCCA-GACAGGTCTTACACTGGCTATCATCTATCGAA * * * * 52649978 GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGAC 1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGAA * 52650027 GTCAAT-CCATGTCCCAGACAGGTCTTACACTG 1 GTCGATGCCATGTCCCAGACAGGTCTTACACTG 52650059 ACATACAACA Statistics Matches: 107, Mismatches: 19, Indels: 8 0.80 0.14 0.06 Matches are distributed among these distances: 47 19 0.18 48 40 0.37 49 44 0.41 50 4 0.04 ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25 Consensus pattern (49 bp): GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGAA Found at i:52650054 original size:97 final size:97 Alignment explanation
Indices: 52649883--52650060 Score: 236 Period size: 97 Copynumber: 1.8 Consensus size: 97 52649873 GATAAGATGT * * 52649883 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATTTCCAGGA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATTCCCAGGA 52649948 CAGGACTTACACTGACTTTCATATATCGAGGC 66 CAGGACTTACACTGACTTTCATATATCGAGGC * ** * * 52649980 CGATGCCGTGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCGACGTCAAT-CCATGTCCCA 1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTCAATGCCAT-TCCCA * 52650043 -GACAGGTCTTACACTGAC 63 GGACAGGACTTACACTGAC 52650061 ATACAACATG Statistics Matches: 70, Mismatches: 8, Indels: 6 0.83 0.10 0.07 Matches are distributed among these distances: 96 17 0.24 97 40 0.57 98 13 0.19 ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25 Consensus pattern (97 bp): CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATTCCCAGGA CAGGACTTACACTGACTTTCATATATCGAGGC Found at i:52650149 original size:48 final size:46 Alignment explanation
Indices: 52650078--52650198 Score: 143 Period size: 46 Copynumber: 2.6 Consensus size: 46 52650068 ATGCTGACAC * * * * 52650078 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG 1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCAAGGCCGATG * * * 52650126 CATGTCCTAGACATGTCTTACACTAGCTCTCATCTCAATGCTGATG 1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG * * 52650172 CATGACCCAAACATGTCTTACACTAGC 1 CATGTCCCAGACATGTCTTACACTAGC 52650199 GCACATATCA Statistics Matches: 63, Mismatches: 10, Indels: 2 0.84 0.13 0.03 Matches are distributed among these distances: 46 36 0.57 47 2 0.03 48 25 0.40 ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28 Consensus pattern (46 bp): CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATG Found at i:52650571 original size:30 final size:30 Alignment explanation
Indices: 52650535--52650591 Score: 96 Period size: 30 Copynumber: 1.9 Consensus size: 30 52650525 ACATTTTTGG ** 52650535 CAAAATGACCATTTTGTCCCTAGACTTTTA 1 CAAAATGACCATTTTACCCCTAGACTTTTA 52650565 CAAAATGACCATTTTACCCCTAGACTT 1 CAAAATGACCATTTTACCCCTAGACTT 52650592 GAAAATCGAT Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 30 25 1.00 ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33 Consensus pattern (30 bp): CAAAATGACCATTTTACCCCTAGACTTTTA Found at i:52652615 original size:20 final size:20 Alignment explanation
Indices: 52652590--52652630 Score: 55 Period size: 20 Copynumber: 2.0 Consensus size: 20 52652580 GACTAAAATG 52652590 AAAATTGTAAAATTTGATGA 1 AAAATTGTAAAATTTGATGA * * * 52652610 AAAATTTTGAAATTTTATGA 1 AAAATTGTAAAATTTGATGA 52652630 A 1 A 52652631 TACGTGTGCT Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39 Consensus pattern (20 bp): AAAATTGTAAAATTTGATGA Found at i:52661409 original size:99 final size:100 Alignment explanation
Indices: 52661241--52661474 Score: 301 Period size: 99 Copynumber: 2.4 Consensus size: 100 52661231 GTCGCATGTT * * 52661241 TAGTACTAGGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAGTGCA 1 TAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAGTGCA * * ** * 52661306 GGCTACTATGTGTATCAGATGGTTAGGTCACGTATG 66 GGCTACTACGTGTACCAGATAATT-GGTCACATATG * * * 52661342 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGATCACGTGTGTAGTACTAAGTGCA 1 TAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAGTGCA * * * 52661405 GGCTACTACGTGTACCGGATAATTGGTCGCATGTG 66 GGCTACTACGTGTACCAGATAATTGGTCACATATG * * * 52661440 TAGTACTATGTGCAGGCTACTATGCGTACCAGAAA 1 TAGTACTAAGTGCAGGCTACTACGCGTACCCGAAA 52661475 GCTTTGGCTA Statistics Matches: 115, Mismatches: 18, Indels: 3 0.85 0.13 0.02 Matches are distributed among these distances: 98 38 0.33 99 45 0.39 100 1 0.01 101 31 0.27 ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28 Consensus pattern (100 bp): TAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAGTGCA GGCTACTACGTGTACCAGATAATTGGTCACATATG Found at i:52661469 original size:49 final size:49 Alignment explanation
Indices: 52661241--52661469 Score: 278 Period size: 49 Copynumber: 4.6 Consensus size: 49 52661231 GTCGCATGTT * * * * * 52661241 TAGTACTAGGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTG 1 TAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-T-TGGTCACGTGTG * * ** * 52661292 TAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTATG 1 TAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT-GGTCACGTGTG * * 52661342 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCACGTGTG 1 TAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACGTGTG * * * 52661391 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTG 1 TAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACGTGTG * * 52661440 TAGTACTATGTGCAGGCTACTATGCGTACC 1 TAGTACTAAGTGCAGGCTACTATGTGTACC 52661470 AGAAAGCTTT Statistics Matches: 155, Mismatches: 22, Indels: 4 0.86 0.12 0.02 Matches are distributed among these distances: 49 83 0.54 50 43 0.28 51 29 0.19 ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29 Consensus pattern (49 bp): TAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACGTGTG Found at i:52671953 original size:24 final size:24 Alignment explanation
Indices: 52671926--52672088 Score: 299 Period size: 24 Copynumber: 6.8 Consensus size: 24 52671916 GCTGGAAATA 52671926 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 52671950 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 52671974 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC * 52671998 TATGGCACTATGTGTGCTATTTAC 1 TATGGCACTATGTGTGCGATTTAC 52672022 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC ** 52672046 TATGGCACTATGTGTGCGATTCGC 1 TATGGCACTATGTGTGCGATTTAC 52672070 TATGGCACTATGTGTGCGA 1 TATGGCACTATGTGTGCGA 52672089 ACATAATAAG Statistics Matches: 135, Mismatches: 4, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 24 135 1.00 ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37 Consensus pattern (24 bp): TATGGCACTATGTGTGCGATTTAC Found at i:52674219 original size:40 final size:40 Alignment explanation
Indices: 52674102--52674254 Score: 143 Period size: 40 Copynumber: 3.8 Consensus size: 40 52674092 TCGAATGATG * * * * 52674102 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTTACTAAA 1 TCCGGGATAAGTCCCGAAGGTATTTGTAC-GAGTTACTAAA * * 52674142 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGA-TAAG-TCCCGAAGGTATTTGTACGAGTTACTAAA * 52674182 TCCGGGATAAGTCCCGAAGGTATTTGTACGAGCTACTATAA 1 TCCGGGATAAGTCCCGAAGGTATTTGTACGAGTTACTA-AA * * * * 52674223 -CTGGGCTATGTCCCGAAGGTATTTGAACGAGT 1 TCCGGGATAAGTCCCGAAGGTATTTGTACGAGT 52674255 AGCTATATCT Statistics Matches: 96, Mismatches: 11, Indels: 12 0.81 0.09 0.10 Matches are distributed among these distances: 39 3 0.03 40 80 0.83 41 13 0.14 ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27 Consensus pattern (40 bp): TCCGGGATAAGTCCCGAAGGTATTTGTACGAGTTACTAAA Found at i:52675756 original size:28 final size:27 Alignment explanation
Indices: 52675693--52675762 Score: 122 Period size: 27 Copynumber: 2.6 Consensus size: 27 52675683 ATAGTGAGTC 52675693 CGCACACTTAGTGCTATATAATCAACT 1 CGCACACTTAGTGCTATATAATCAACT * 52675720 CGCACACTTAGTGCTATATGATCAAACT 1 CGCACACTTAGTGCTATATAATC-AACT 52675748 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 52675763 GTACAAATTT Statistics Matches: 41, Mismatches: 1, Indels: 1 0.95 0.02 0.02 Matches are distributed among these distances: 27 22 0.54 28 19 0.46 ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:52684492 original size:27 final size:27 Alignment explanation
Indices: 52684462--52684615 Score: 164 Period size: 27 Copynumber: 5.5 Consensus size: 27 52684452 ATAGTGAATC 52684462 CGCACACTTAGTGCTATAAAATCAGCT 1 CGCACACTTAGTGCTATAAAATCAGCT * * ** 52684489 CGCACACATAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATAAAATC-AGCT 52684517 CGCACACTTAGTGCTATAAAATCAGCT 1 CGCACACTTAGTGCTATAAAATCAGCT * * * 52684544 CGCACACATAGTGCTATATAATTTGAGCT 1 CGCACACTTAGTGCTATA-AA-ATCAGCT * ** 52684573 CGCACACTTAGTGCCATATATTTCCAGCT 1 CGCACACTTAGTGCTATA-AAAT-CAGCT * 52684602 TGCACACTTAGTGC 1 CGCACACTTAGTGC 52684616 CATTCTCGTC Statistics Matches: 107, Mismatches: 16, Indels: 6 0.83 0.12 0.05 Matches are distributed among these distances: 27 40 0.37 28 27 0.25 29 40 0.37 ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29 Consensus pattern (27 bp): CGCACACTTAGTGCTATAAAATCAGCT Found at i:52684509 original size:29 final size:28 Alignment explanation
Indices: 52684462--52684615 Score: 145 Period size: 29 Copynumber: 5.5 Consensus size: 28 52684452 ATAGTGAATC 52684462 CGCACACTTAGTGC-TATAAAATCAGCT 1 CGCACACTTAGTGCATATAAAATCAGCT * * ** 52684489 CGCACACATAGTGC-TATATAATCAAATT 1 CGCACACTTAGTGCATATAAAATC-AGCT 52684517 CGCACACTTAGTGC-TATAAAATCAGCT 1 CGCACACTTAGTGCATATAAAATCAGCT * ** * 52684544 CGCACACATAGTGCTATATAATTTGAGCT 1 CGCACACTTAGTGC-ATATAAAATCAGCT ** 52684573 CGCACACTTAGTGCCATAT-ATTTCCAGCT 1 CGCACACTTAGTG-CATATAAAAT-CAGCT * 52684602 TGCACACTTAGTGC 1 CGCACACTTAGTGC 52684616 CATTCTCGTC Statistics Matches: 107, Mismatches: 15, Indels: 9 0.82 0.11 0.07 Matches are distributed among these distances: 27 36 0.34 28 28 0.26 29 42 0.39 30 1 0.01 ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29 Consensus pattern (28 bp): CGCACACTTAGTGCATATAAAATCAGCT Found at i:52684533 original size:55 final size:55 Alignment explanation
Indices: 52684462--52684565 Score: 208 Period size: 55 Copynumber: 1.9 Consensus size: 55 52684452 ATAGTGAATC 52684462 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT 52684517 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT 1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT 52684566 TTGAGCTCGC Statistics Matches: 49, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 55 49 1.00 ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27 Consensus pattern (55 bp): CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT Found at i:52686632 original size:28 final size:27 Alignment explanation
Indices: 52686569--52686638 Score: 122 Period size: 27 Copynumber: 2.6 Consensus size: 27 52686559 ATAGTGAGTC 52686569 CGCACACTTAGTGCTATATAATCAACT 1 CGCACACTTAGTGCTATATAATCAACT * 52686596 CGCACACTTAGTGCTATATGATCAAACT 1 CGCACACTTAGTGCTATATAATC-AACT 52686624 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 52686639 GTACAAATTT Statistics Matches: 41, Mismatches: 1, Indels: 1 0.95 0.02 0.02 Matches are distributed among these distances: 27 22 0.54 28 19 0.46 ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:52694800 original size:33 final size:34 Alignment explanation
Indices: 52694744--52694811 Score: 129 Period size: 33 Copynumber: 2.0 Consensus size: 34 52694734 CCCCCCATTG 52694744 CCGTGAGTTGAAGAAAAGAGAAAAAAAAATTGTT 1 CCGTGAGTTGAAGAAAAGAGAAAAAAAAATTGTT 52694778 CCGTGAGTTGAAG-AAAGAGAAAAAAAAATTGTT 1 CCGTGAGTTGAAGAAAAGAGAAAAAAAAATTGTT 52694811 C 1 C 52694812 ATCCTTTTTC Statistics Matches: 34, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 33 21 0.62 34 13 0.38 ACGTcount: A:0.49, C:0.07, G:0.24, T:0.21 Consensus pattern (34 bp): CCGTGAGTTGAAGAAAAGAGAAAAAAAAATTGTT Found at i:52696099 original size:39 final size:39 Alignment explanation
Indices: 52696043--52696224 Score: 221 Period size: 39 Copynumber: 4.6 Consensus size: 39 52696033 TCGAATGATG * 52696043 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TACTAAA 1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA * 52696082 TCCGGACTAAGATCCGAAGGCA-TTGTGCGAGTTACTAAA 1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA * 52696121 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA * 52696161 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA 1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA * * 52696201 -CCGGGCTATGTCCGAAGGTATTTG 1 TCCGGGCTAAGTCCGAAGGCATTTG 52696225 AACGAGTAGC Statistics Matches: 130, Mismatches: 7, Indels: 13 0.87 0.05 0.09 Matches are distributed among these distances: 38 14 0.11 39 68 0.52 40 48 0.37 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26 Consensus pattern (39 bp): TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:52696178 original size:79 final size:79 Alignment explanation
Indices: 52696043--52696224 Score: 223 Period size: 79 Copynumber: 2.3 Consensus size: 79 52696033 TCGAATGATG 52696043 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTACTAAATCCGGACTAAGATCCGAAGGCA-TT 1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGTACTAAATCCGGACTAAGATCCGAAGGCATTT 52696106 GTGCGAGTTACTA-AA 65 GTGCGAG-TACTATAA * * ** 52696121 TCCGGACTAAGATCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT 1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCTAAG-TACTAAATCCGGACTAAGAT-CCGAAGGCAT 52696184 TTGTGCGAGTACTATAA 63 TTGTGCGAGTACTATAA * * 52696201 -CCGGGCTATGTCCGAAGGTATTTG 1 TCCGGGCTAAGTCCGAAGGCATTTG 52696225 AACGAGTAGC Statistics Matches: 91, Mismatches: 7, Indels: 12 0.83 0.06 0.11 Matches are distributed among these distances: 78 34 0.37 79 46 0.51 80 11 0.12 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26 Consensus pattern (79 bp): TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTACTAAATCCGGACTAAGATCCGAAGGCATTTG TGCGAGTACTATAA Found at i:52706309 original size:29 final size:29 Alignment explanation
Indices: 52706276--52706376 Score: 157 Period size: 29 Copynumber: 3.5 Consensus size: 29 52706266 TGACGAGATC 52706276 GGCACTAAGTGTGCGTGCTGGAAATATAT 1 GGCACTAAGTGTGCGTGCTGGAAATATAT * 52706305 GGCACTAAGTGTGCGTGCTGGAAATATAA 1 GGCACTAAGTGTGCGTGCTGGAAATATAT * * 52706334 GGCACTAAGTGTGCATGCTGGAAAAATAT 1 GGCACTAAGTGTGCGTGCTGGAAATATAT * * 52706363 GACACTATGTGTGC 1 GGCACTAAGTGTGC 52706377 AAGTTGGAAA Statistics Matches: 66, Mismatches: 6, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 29 66 1.00 ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26 Consensus pattern (29 bp): GGCACTAAGTGTGCGTGCTGGAAATATAT Found at i:52706377 original size:29 final size:29 Alignment explanation
Indices: 52706276--52706397 Score: 154 Period size: 29 Copynumber: 4.2 Consensus size: 29 52706266 TGACGAGATC * * 52706276 GGCACTAAGTGTGCGTGCTGGAAATATAT 1 GGCACTAAGTGTGCATGCTGGAAAAATAT * * * 52706305 GGCACTAAGTGTGCGTGCTGGAAATATAA 1 GGCACTAAGTGTGCATGCTGGAAAAATAT 52706334 GGCACTAAGTGTGCATGCTGGAAAAATAT 1 GGCACTAAGTGTGCATGCTGGAAAAATAT * * * * * 52706363 GACACTATGTGTGCAAGTTGGAAAAATAC 1 GGCACTAAGTGTGCATGCTGGAAAAATAT 52706392 GGCACT 1 GGCACT 52706398 GGGTGTGTGA Statistics Matches: 83, Mismatches: 10, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 29 83 1.00 ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25 Consensus pattern (29 bp): GGCACTAAGTGTGCATGCTGGAAAAATAT Found at i:52708587 original size:29 final size:28 Alignment explanation
Indices: 52708555--52708657 Score: 89 Period size: 29 Copynumber: 3.6 Consensus size: 28 52708545 GGGACGAGAT * * 52708555 TGGCACTGAGTGTGCGAGCTTGTAATGTA 1 TGGCACTAAGTGTGCGAGCTTG-AATATA * * * 52708584 TGGCACTAAGTGTACGAGTTTGGACTATA 1 TGGCACTAAGTGTGCGAGCTT-GAATATA * ** * * 52708613 TGGAACTGTGTGTGCGGGCTTGAATCACA 1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA 52708642 TGGCACTAAGTGTGCG 1 TGGCACTAAGTGTGCG 52708658 TGATTGAGTA Statistics Matches: 56, Mismatches: 16, Indels: 4 0.74 0.21 0.05 Matches are distributed among these distances: 28 3 0.05 29 52 0.93 30 1 0.02 ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29 Consensus pattern (28 bp): TGGCACTAAGTGTGCGAGCTTGAATATA Found at i:52713364 original size:17 final size:17 Alignment explanation
Indices: 52713339--52713373 Score: 61 Period size: 17 Copynumber: 2.1 Consensus size: 17 52713329 TGTGATGATA 52713339 CAAAAAAGATCCTTTAT 1 CAAAAAAGATCCTTTAT * 52713356 CAAATAAGATCCTTTAT 1 CAAAAAAGATCCTTTAT 52713373 C 1 C 52713374 TATAATATCT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 17 17 1.00 ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31 Consensus pattern (17 bp): CAAAAAAGATCCTTTAT Found at i:52713487 original size:19 final size:19 Alignment explanation
Indices: 52713463--52713529 Score: 73 Period size: 21 Copynumber: 3.3 Consensus size: 19 52713453 ATTGAAAAGT 52713463 TGAGAAATCTGAGGCTAGG 1 TGAGAAATCTGAGGCTAGG * 52713482 TGAGAAATTGTTGAGGCT-GG 1 TGAGAAA-T-CTGAGGCTAGG 52713502 TGAAAGTAAATCTGAGGCTAGG 1 TG--AG-AAATCTGAGGCTAGG 52713524 TGAGAA 1 TGAGAA 52713530 GTTGTTCTGT Statistics Matches: 40, Mismatches: 2, Indels: 12 0.74 0.04 0.22 Matches are distributed among these distances: 19 9 0.22 20 7 0.17 21 14 0.35 22 7 0.17 23 3 0.08 ACGTcount: A:0.33, C:0.07, G:0.36, T:0.24 Consensus pattern (19 bp): TGAGAAATCTGAGGCTAGG Found at i:52714681 original size:28 final size:28 Alignment explanation
Indices: 52714649--52714717 Score: 95 Period size: 28 Copynumber: 2.5 Consensus size: 28 52714639 CAATCAAATG * 52714649 TGGCACTCAGTGTACGAA-ATATTGAGAA 1 TGGCACTTAGTGTAC-AAGATATTGAGAA * 52714677 TGGCACTTAGTGTGCAAGATATTGAGAA 1 TGGCACTTAGTGTACAAGATATTGAGAA * 52714705 TGACACTTAGTGT 1 TGGCACTTAGTGT 52714718 GGGAACTATT Statistics Matches: 37, Mismatches: 3, Indels: 2 0.88 0.07 0.05 Matches are distributed among these distances: 27 2 0.05 28 35 0.95 ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29 Consensus pattern (28 bp): TGGCACTTAGTGTACAAGATATTGAGAA Found at i:52714890 original size:41 final size:41 Alignment explanation
Indices: 52714844--52714958 Score: 112 Period size: 40 Copynumber: 2.8 Consensus size: 41 52714834 ATGGTGATAT * * 52714844 TCGGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTAAA 1 TCGGGCTTTGAGCCTAGCAGGCCTTGTGCTGGTGAATAAAA * 52714885 TCGGGC-TT-ATGCCTAGCAGGCCTAT-TG-TCGGTGTATAAAA 1 TCGGGCTTTGA-GCCTAGCAGGCCT-TGTGCT-GGTGAATAAAA * * * * 52714925 TCAGACTTTGAGTCTAGCAGGCCTTGTGCCGGTG 1 TCGGGCTTTGAGCCTAGCAGGCCTTGTGCTGGTG 52714959 TGAGATATAG Statistics Matches: 60, Mismatches: 7, Indels: 14 0.74 0.09 0.17 Matches are distributed among these distances: 39 2 0.03 40 30 0.50 41 27 0.45 42 1 0.02 ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30 Consensus pattern (41 bp): TCGGGCTTTGAGCCTAGCAGGCCTTGTGCTGGTGAATAAAA Found at i:52715167 original size:21 final size:22 Alignment explanation
Indices: 52715136--52715176 Score: 57 Period size: 21 Copynumber: 1.9 Consensus size: 22 52715126 GAATGTGTTG 52715136 TGATGTATGTGAAAATGAAATA 1 TGATGTATGTGAAAATGAAATA ** 52715158 TGAT-TATGTGCCAATGAAA 1 TGATGTATGTGAAAATGAAA 52715177 CATAAATGAA Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 21 13 0.76 22 4 0.24 ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32 Consensus pattern (22 bp): TGATGTATGTGAAAATGAAATA Found at i:52720958 original size:49 final size:49 Alignment explanation
Indices: 52720839--52721314 Score: 799 Period size: 49 Copynumber: 9.9 Consensus size: 49 52720829 GTATGAGATG * 52720839 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-- 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52720886 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52720935 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 52720984 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-- 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52721031 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 52721080 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-- 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52721127 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 52721176 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-- 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 52721223 TATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAGGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * 52721271 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA 52721315 TATATGTGTG Statistics Matches: 404, Mismatches: 16, Indels: 16 0.93 0.04 0.04 Matches are distributed among these distances: 46 19 0.05 47 159 0.39 48 24 0.06 49 202 0.50 ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29 Consensus pattern (49 bp): TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA Found at i:52721035 original size:96 final size:96 Alignment explanation
Indices: 52720838--52721314 Score: 861 Period size: 96 Copynumber: 5.0 Consensus size: 96 52720828 TGTATGAGAT * 52720838 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAG 1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG * 52720901 GCCTAATGGCCAATGTGATGAATGTGAAAGT 66 GCCTAATGGCCAATGTGATGAATGTGAAAGA 52720932 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA 1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA 52720997 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA 64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA 52721030 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG 1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG 52721095 GCCTAATGGCCAATGTGATGAATGTGAAAGA 66 GCCTAATGGCCAATGTGATGAATGTGAAAGA 52721126 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG 1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG 52721191 GCCTAATGGCCAATGTGATGAATGTGAAAGA 66 GCCTAATGGCCAATGTGATGAATGTGAAAGA * * * 52721222 GTATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG 1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG * 52721286 GCCTAATGGCCGATGTGATGAATGTGAAA 66 GCCTAATGGCCAATGTGATGAATGTGAAA 52721315 TATATGTGTG Statistics Matches: 373, Mismatches: 6, Indels: 7 0.97 0.02 0.02 Matches are distributed among these distances: 94 1 0.00 95 64 0.17 96 267 0.72 98 41 0.11 ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29 Consensus pattern (96 bp): GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG GCCTAATGGCCAATGTGATGAATGTGAAAGA Found at i:52721107 original size:145 final size:144 Alignment explanation
Indices: 52720839--52721314 Score: 816 Period size: 145 Copynumber: 3.3 Consensus size: 144 52720829 GTATGAGATG * 52720839 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC 52720904 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT 66 TAATGGCCAATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGAT 52720969 GAATGTGAAAGTGTA 130 GAATGTGAAAGTGTA * * 52720984 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC 52721049 TAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGAT 66 TAATGGCCAATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAGGCCTAATGGCCAATGTGAT * 52721114 GAATGTGAAAGAG-- 130 GAATGTGAAAGTGTA 52721127 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGG * * 52721192 CCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT-ATGTGATAAGGCCTAATGG-CGATGTGA 64 CCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCAATGTGA * 52721255 TGAATGTGAAGGTGTA 129 TGAATGTGAAAGTGTA * 52721271 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA 52721315 TATATGTGTG Statistics Matches: 315, Mismatches: 12, Indels: 9 0.94 0.04 0.03 Matches are distributed among these distances: 142 19 0.06 143 69 0.22 144 43 0.14 145 184 0.58 ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29 Consensus pattern (144 bp): TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC TAATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCTAATGGCCAATGTGATG AATGTGAAAGTGTA Found at i:52721363 original size:48 final size:48 Alignment explanation
Indices: 52721306--52721505 Score: 373 Period size: 48 Copynumber: 4.2 Consensus size: 48 52721296 CGATGTGATG 52721306 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT 1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT 52721354 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT 1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT * 52721402 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT 1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT * * 52721450 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT 1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT 52721498 AATGTGAA 1 AATGTGAA 52721506 TGTTGTAACA Statistics Matches: 150, Mismatches: 2, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 48 150 1.00 ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32 Consensus pattern (48 bp): AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT Found at i:52721599 original size:37 final size:37 Alignment explanation
Indices: 52721545--52721672 Score: 238 Period size: 37 Copynumber: 3.4 Consensus size: 37 52721535 AACTTGGAAA * 52721545 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT 1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT 52721583 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT 1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT 52721620 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT 1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT 52721657 TATGTCCGGGTAAGAC 1 TATGTCCGGGTAAGAC 52721673 TTCGTAATAA Statistics Matches: 89, Mismatches: 1, Indels: 1 0.98 0.01 0.01 Matches are distributed among these distances: 37 85 0.96 38 4 0.04 ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25 Consensus pattern (37 bp): TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT Found at i:52723622 original size:40 final size:40 Alignment explanation
Indices: 52723576--52723836 Score: 237 Period size: 40 Copynumber: 6.5 Consensus size: 40 52723566 TGAATGATAC ** 52723576 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT 1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT * * * * 52723616 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC 1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT * * * * 52723656 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT 1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT * * * * 52723696 CC-GGCTAAATTCCGAAGAGCACTCGTGCTAGTGATGTAT 1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT * * * 52723735 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT 1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT * * * 52723775 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT 1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT * * 52723815 CTGGGCTAGGTCCCGAAGAGCA 1 CCGGGCTAAGTCCCGAAGAGCA 52723837 ATCATGCTGG Statistics Matches: 191, Mismatches: 22, Indels: 16 0.83 0.10 0.07 Matches are distributed among these distances: 39 22 0.12 40 163 0.85 41 6 0.03 ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT Found at i:52727514 original size:49 final size:49 Alignment explanation
Indices: 52727395--52727822 Score: 728 Period size: 49 Copynumber: 8.9 Consensus size: 49 52727385 GTATGAGATG * 52727395 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-- 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52727442 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52727491 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52727540 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 52727589 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-- 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 52727636 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 52727685 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-- 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * * 52727732 TATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA * 52727779 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA 52727823 TATATGTGTG Statistics Matches: 361, Mismatches: 12, Indels: 14 0.93 0.03 0.04 Matches are distributed among these distances: 45 36 0.10 47 102 0.28 49 223 0.62 ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29 Consensus pattern (49 bp): TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA Found at i:52727591 original size:96 final size:94 Alignment explanation
Indices: 52727393--52727822 Score: 702 Period size: 96 Copynumber: 4.5 Consensus size: 94 52727383 ATGTATGAGA * * 52727393 TGTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG 1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGG 52727458 CCTAATGGCCAATGTGATGAATGTGAAAG 66 CCTAATGGCCAATGTGATGAATGTGAAAG * 52727487 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT 1 TG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGAT 52727552 AAGGCCTAATGGCCAATGTGATGAATGTGAAAG 62 AAGGCCTAATGGCCAATGTGATGAATGTGAAAG 52727585 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAA 1 TGTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAA 52727650 GGCCTAATGGCCAATGTGATGAATGTGAAAG 64 GGCCTAATGGCCAATGTGATGAATGTGAAAG 52727681 TGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATA--TGATAA 1 TGTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAA * * 52727744 GGCCTAATGGCCGATGTGATGAATGTGAAGG 64 GGCCTAATGGCCAATGTGATGAATGTGAAAG * 52727775 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA 1 TG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA 52727823 TATATGTGTG Statistics Matches: 323, Mismatches: 5, Indels: 16 0.94 0.01 0.05 Matches are distributed among these distances: 94 77 0.24 96 158 0.49 98 88 0.27 ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29 Consensus pattern (94 bp): TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGG CCTAATGGCCAATGTGATGAATGTGAAAG Found at i:52727641 original size:145 final size:144 Alignment explanation
Indices: 52727395--52727822 Score: 736 Period size: 145 Copynumber: 3.0 Consensus size: 144 52727385 GTATGAGATG * 52727395 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC 52727460 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT 66 TAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGAT 52727525 GAATGTGAAAGTGTA 130 GAATGTGAAAGTGTA 52727540 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGG * 52727605 CCTAATGGCCAATGTGATGAATGTGAAAGAG-TATATATGTGATAAGGCCTAATGGCCAATGTGA 64 CCTAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGA 52727669 TGAATGTGAAAGTGTA 129 TGAATGTGAAAGTGTA * * 52727685 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATA--TGATAAGGCC 1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC * * * 52727748 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT 66 TAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGAT 52727813 GAATGTGAAA 130 GAATGTGAAA 52727823 TATATGTGTG Statistics Matches: 271, Mismatches: 8, Indels: 10 0.94 0.03 0.03 Matches are distributed among these distances: 141 36 0.13 143 44 0.16 145 150 0.55 147 41 0.15 ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29 Consensus pattern (144 bp): TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC TAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATG AATGTGAAAGTGTA Found at i:52727871 original size:48 final size:48 Alignment explanation
Indices: 52727814--52727917 Score: 181 Period size: 48 Copynumber: 2.2 Consensus size: 48 52727804 CGATGTGATG * 52727814 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT 1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCC * * 52727862 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCC 1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCC 52727910 AATGTGAA 1 AATGTGAA 52727918 TGTTGTAACA Statistics Matches: 53, Mismatches: 3, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 48 53 1.00 ACGTcount: A:0.34, C:0.07, G:0.29, T:0.31 Consensus pattern (48 bp): AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCC Found at i:52728011 original size:37 final size:37 Alignment explanation
Indices: 52727957--52728084 Score: 229 Period size: 37 Copynumber: 3.4 Consensus size: 37 52727947 AACTTGGAAA * 52727957 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT 1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT 52727995 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT 1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT 52728032 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT 1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT * 52728069 TATGTCTGGGTAAGAC 1 TATGTCCGGGTAAGAC 52728085 TTCGTAATAA Statistics Matches: 88, Mismatches: 2, Indels: 1 0.97 0.02 0.01 Matches are distributed among these distances: 37 84 0.95 38 4 0.05 ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26 Consensus pattern (37 bp): TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT Found at i:52734774 original size:46 final size:47 Alignment explanation
Indices: 52734678--52734776 Score: 146 Period size: 46 Copynumber: 2.1 Consensus size: 47 52734668 AGCAGCTCCT * * 52734678 TTAATGCTGTCCATGCATGCTTCTTGTTCAAGGCTTCAGCAGCAACA 1 TTAATGCTGTCCATGCATGCTTCTTCTTCAAGGCTTCAACAGCAACA * * * 52734725 TTAATGCTGTCCATGCTTGCTT-TTCTTTAAGGCTTCAACAGCATCA 1 TTAATGCTGTCCATGCATGCTTCTTCTTCAAGGCTTCAACAGCAACA 52734771 TTAATG 1 TTAATG 52734777 AAATGAACTC Statistics Matches: 47, Mismatches: 5, Indels: 1 0.89 0.09 0.02 Matches are distributed among these distances: 46 26 0.55 47 21 0.45 ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36 Consensus pattern (47 bp): TTAATGCTGTCCATGCATGCTTCTTCTTCAAGGCTTCAACAGCAACA Found at i:52736644 original size:27 final size:27 Alignment explanation
Indices: 52736622--52736906 Score: 317 Period size: 27 Copynumber: 10.6 Consensus size: 27 52736612 TTAGTTTACC * 52736622 AAATTACGAAAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * * * * 52736649 AAATTACTAAAATACCCTTGGTTTATA 1 AAATTACCAAAATACCCCTAGTTTGTA * * 52736676 AAATCACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA ** * ** 52736703 AAATTACCAAAATACCTTTGGTTTACA 1 AAATTACCAAAATACCCCTAGTTTGTA * 52736730 AAATTACCAAAATACCCAT-GTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * * * * 52736756 AAATTACTAAAATA-CCTTTGTTTATA 1 AAATTACCAAAATACCCCTAGTTTGTA 52736782 AAATTACCAAAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * 52736809 AAATTATCAAAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * * 52736836 AAATTACCAAAATAACCCT-GATTTGTG 1 AAATTACCAAAATACCCCTAG-TTTGTA * 52736863 AAATTACCAAAATACCCCT-GATTTGTG 1 AAATTACCAAAATACCCCTAG-TTTGTA ** 52736890 AAATTACTGAAATACCC 1 AAATTACCAAAATACCC 52736907 TCGACCTGTA Statistics Matches: 224, Mismatches: 31, Indels: 6 0.86 0.12 0.02 Matches are distributed among these distances: 25 3 0.01 26 38 0.17 27 183 0.82 ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32 Consensus pattern (27 bp): AAATTACCAAAATACCCCTAGTTTGTA Found at i:52736689 original size:54 final size:53 Alignment explanation
Indices: 52736622--52736950 Score: 349 Period size: 54 Copynumber: 6.1 Consensus size: 53 52736612 TTAGTTTACC * 52736622 AAATTACGAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA 1 AAATTACCAAAATACCCCT-GTTTGTAAAATTACTAAAATACCCTTGGTTTATA * * * * 52736676 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTTTGGTTTACA 1 AAATTACCAAAATACCCCT-GTTTGTAAAATTACTAAAATACCCTTGGTTTATA * * 52736730 AAATTACCAAAATACCCATGTTTGTAAAATTACTAAAATA-CCTTTGTTTATA 1 AAATTACCAAAATACCCCTGTTTGTAAAATTACTAAAATACCCTTGGTTTATA * * * 52736782 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCT-GTTTGTAAAATTACT-AAAATACCCTTGGTTTATA * * * * * * * 52736836 AAATTACCAAAATAACCCTGATTTGTGAAATTACCAAAATACCCCTGATTTGTG 1 AAATTACCAAAATACCCCTG-TTTGTAAAATTACTAAAATACCCTTGGTTTATA ** ** * * ** 52736890 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTAAAATACCCTCGACTTATA 1 AAATTACCAAAATACCCCT-G-TTTGTAAAATTACTAAAATACCCTTGGTTTATA 52736944 AAATTAC 1 AAATTAC 52736951 TATAGTACCC Statistics Matches: 235, Mismatches: 34, Indels: 12 0.84 0.12 0.04 Matches are distributed among these distances: 52 28 0.12 53 44 0.19 54 163 0.69 ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32 Consensus pattern (53 bp): AAATTACCAAAATACCCCTGTTTGTAAAATTACTAAAATACCCTTGGTTTATA Found at i:52736920 original size:27 final size:27 Alignment explanation
Indices: 52736890--52736961 Score: 90 Period size: 27 Copynumber: 2.7 Consensus size: 27 52736880 CTGATTTGTG * * 52736890 AAATTACTGAAATACCCTCGACCTGTA 1 AAATTACTAAAATACCCTCGACCTATA * * 52736917 AAATTATTAAAATACCCTCGACTTATA 1 AAATTACTAAAATACCCTCGACCTATA * * 52736944 AAATTACTATAGTACCCT 1 AAATTACTAAAATACCCT 52736962 TGATTTACAG Statistics Matches: 38, Mismatches: 7, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 27 38 1.00 ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31 Consensus pattern (27 bp): AAATTACTAAAATACCCTCGACCTATA Found at i:52736948 original size:81 final size:80 Alignment explanation
Indices: 52736622--52736950 Score: 260 Period size: 81 Copynumber: 4.1 Consensus size: 80 52736612 TTAGTTTACC * * ** * * * 52736622 AAATTACGAAAATACCCCTAGTTTGTAAAATTA-CTAAAATACCCTTG-GTTTATAAAATCACCA 1 AAATTACCAAAATACCCCTAGTTTGTAAAATTATC-AAAATACCC-CGAGCCTGTAAAATTACTA * * 52736685 AAATACCCCTGGTTTGTA 64 AAATA-CCCTGATTTATA ** * ** * ** 52736703 AAATTACCAAAATACCTTTGGTTTACAAAATTACCAAAATA-CCC-ATGTTTGTAAAATTACTAA 1 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCGA-GCCTGTAAAATTACTAA * 52736766 AATACCTTTG-TTTATA 65 AATACC-CTGATTTATA * ** * 52736782 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA 1 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCGAGCCTGTAAAATTACTAAA * * 52736847 ATAACCCTGATTTGTG 66 AT-ACCCTGATTTATA * * * 52736863 AAATTACCAAAATACCCCT-GATTTGTGAAATTA-CTGAAATACCCTCGA-CCTGTAAAATTATT 1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTATC-AAAATACCC-CGAGCCTGTAAAATTACT * 52736925 AAAATACCCTCGACTTATA 63 AAAATACCCT-GATTTATA 52736944 AAATTAC 1 AAATTAC 52736951 TATAGTACCC Statistics Matches: 204, Mismatches: 32, Indels: 24 0.78 0.12 0.09 Matches are distributed among these distances: 79 42 0.21 80 53 0.26 81 106 0.52 82 3 0.01 ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32 Consensus pattern (80 bp): AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCGAGCCTGTAAAATTACTAAA ATACCCTGATTTATA Found at i:52737037 original size:27 final size:27 Alignment explanation
Indices: 52737016--52737327 Score: 421 Period size: 27 Copynumber: 11.6 Consensus size: 27 52737006 GAAATACTTT * * 52737016 TGTAAGGTAGAAATACCGAAATACCCC 1 TGTAGGGTAGAATTACCGAAATACCCC * * * 52737043 TGTAGGGTAGAATTACCAAAATACGCT 1 TGTAGGGTAGAATTACCGAAATACCCC * * 52737070 TGTAGGGTAGAATTATCTAAATACCCC 1 TGTAGGGTAGAATTACCGAAATACCCC * * 52737097 TATAGGGTAGAATTACCGAAATACCGC 1 TGTAGGGTAGAATTACCGAAATACCCC 52737124 TGTAGGGTAGAATTACCGAAATACCCC 1 TGTAGGGTAGAATTACCGAAATACCCC * 52737151 TGTAGGGTAGAATTACCGAAACACCCC 1 TGTAGGGTAGAATTACCGAAATACCCC * 52737178 TGTAGGGTAGAATTACCGAAATATCCC 1 TGTAGGGTAGAATTACCGAAATACCCC * * 52737205 TGTAGGGTAGAATTATCGCAATACCCC 1 TGTAGGGTAGAATTACCGAAATACCCC * 52737232 TGTAGGGTAGAATTACCGAAATACCCT 1 TGTAGGGTAGAATTACCGAAATACCCC ** 52737259 TGTA-GGTAGAATTACTAAAATACCCC 1 TGTAGGGTAGAATTACCGAAATACCCC * * * 52737285 TGTAGGGTGGAATTACCGAGATA-CCT 1 TGTAGGGTAGAATTACCGAAATACCCC * * 52737311 TGTGGGGTAAAATTACC 1 TGTAGGGTAGAATTACC 52737328 ATTTTGCCCC Statistics Matches: 249, Mismatches: 35, Indels: 3 0.87 0.12 0.01 Matches are distributed among these distances: 26 39 0.16 27 210 0.84 ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25 Consensus pattern (27 bp): TGTAGGGTAGAATTACCGAAATACCCC Found at i:52737806 original size:22 final size:22 Alignment explanation
Indices: 52737754--52737818 Score: 87 Period size: 22 Copynumber: 3.0 Consensus size: 22 52737744 TTAAAGCCTT * * 52737754 CTGATTATGGCTTTGTGTCAAC 1 CTGATTATGGCTGTGTGCCAAC * 52737776 CT-ACATATGGCTGTGTGCCAAC 1 CTGA-TTATGGCTGTGTGCCAAC 52737798 CTGATTATGGCTGTGTGCCAA 1 CTGATTATGGCTGTGTGCCAA 52737819 ACATATTTGC Statistics Matches: 37, Mismatches: 4, Indels: 4 0.82 0.09 0.09 Matches are distributed among these distances: 21 1 0.03 22 35 0.95 23 1 0.03 ACGTcount: A:0.20, C:0.22, G:0.25, T:0.34 Consensus pattern (22 bp): CTGATTATGGCTGTGTGCCAAC Found at i:52738024 original size:26 final size:27 Alignment explanation
Indices: 52737976--52738046 Score: 74 Period size: 26 Copynumber: 2.7 Consensus size: 27 52737966 TATTCTGTTA * * * 52737976 AGTGGCTTTGCCACATTATCTGT-TCT 1 AGTGGCTCTGCCACAATACCTGTATCT 52738002 -GATGGCTCTGCCACAATACCTGTATCT 1 AG-TGGCTCTGCCACAATACCTGTATCT * * 52738029 AGTGACTCTGTCACAATA 1 AGTGGCTCTGCCACAATA 52738047 TCTGATAACT Statistics Matches: 37, Mismatches: 5, Indels: 5 0.79 0.11 0.11 Matches are distributed among these distances: 25 1 0.03 26 18 0.49 27 17 0.46 28 1 0.03 ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34 Consensus pattern (27 bp): AGTGGCTCTGCCACAATACCTGTATCT Found at i:52738226 original size:6 final size:6 Alignment explanation
Indices: 52738217--52738322 Score: 74 Period size: 6 Copynumber: 17.2 Consensus size: 6 52738207 TACTTGATAT * * * 52738217 TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTT TGATTC 1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC * * * * 52738266 TG-TTACC TGATAC TGATTT TGATTT TGATTC TG-TTACC TGATAC TGATTC 1 TGATT--C TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC 52738316 TGATTC T 1 TGATTC T 52738323 AATTTTAGTT Statistics Matches: 79, Mismatches: 12, Indels: 18 0.72 0.11 0.17 Matches are distributed among these distances: 5 6 0.08 6 61 0.77 7 9 0.11 8 3 0.04 ACGTcount: A:0.19, C:0.15, G:0.16, T:0.50 Consensus pattern (6 bp): TGATTC Found at i:52738238 original size:31 final size:31 Alignment explanation
Indices: 52738187--52738320 Score: 223 Period size: 31 Copynumber: 4.3 Consensus size: 31 52738177 TTGCATTCAC * * * 52738187 ATTCTGATTTTTTATTCTGTTACTTGATATTG 1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG 52738219 ATTCTGATTTTGATTCTGTTACCTGATACTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG 52738250 ATTCTGATTTTGATTCTGTTACCTGATACTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG * 52738281 ATTTTGATTTTGATTCTGTTACCTGATACTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG 52738312 ATTCTGATT 1 ATTCTGATT 52738321 CTAATTTTAG Statistics Matches: 97, Mismatches: 5, Indels: 1 0.94 0.05 0.01 Matches are distributed among these distances: 31 90 0.93 32 7 0.07 ACGTcount: A:0.19, C:0.13, G:0.15, T:0.52 Consensus pattern (31 bp): ATTCTGATTTTGATTCTGTTACCTGATACTG Found at i:52740143 original size:27 final size:27 Alignment explanation
Indices: 52740113--52740373 Score: 306 Period size: 27 Copynumber: 9.6 Consensus size: 27 52740103 TTAGTTTACC 52740113 AAATTACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * ** 52740140 AAATTACCAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCCTGGTTTGTA * 52740167 AAATTACCAAAATACCCATGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * ** * 52740194 AAATTACTAAAATACCCTTTATTTATA 1 AAATTACCAAAATACCCCTGGTTTGTA * * 52740221 AAATTACCAATATACCCTTGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * 52740248 AAATTACCAAAATACTCCTGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * * 52740275 AAATTATCAAATTACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * * 52740302 AAATAACCAAAATACCCCTGATTTGTG 1 AAATTACCAAAATACCCCTGGTTTGTA * * * 52740329 AAATTACCAAAATACCTCTGATTTTGTG 1 AAATTACCAAAATACCCCTG-GTTTGTA ** 52740357 AAATTACTGAAATACCC 1 AAATTACCAAAATACCC 52740374 TCGACCTGTA Statistics Matches: 198, Mismatches: 35, Indels: 1 0.85 0.15 0.00 Matches are distributed among these distances: 27 178 0.90 28 20 0.10 ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33 Consensus pattern (27 bp): AAATTACCAAAATACCCCTGGTTTGTA Found at i:52740178 original size:54 final size:54 Alignment explanation
Indices: 52740113--52740446 Score: 330 Period size: 54 Copynumber: 6.2 Consensus size: 54 52740103 TTAGTTTACC * * 52740113 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA * * * 52740167 AAATTACCAAAATACCCATGGTTTGTAAAATTACTAAAATACCCTTTATTTATA 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA * * * * 52740221 AAATTACCAATATACCCTTGGTTTGTAAAATTACCAAAATACTCC-TGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATAC-CCTTGATTTATA * * * * * * * 52740275 AAATTATCAAATTACCCCTAGTTTGTAAAATAACCAAAATACCCCTGATTTGTG 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA * * * ** * ** * 52740329 AAATTACCAAAATACCTCTGATTTTGTGAAATTACTGAAATACCCTCGACCTGTA 1 AAATTACCAAAATACCCCTG-GTTTGTAAAATTACCAAAATACCCTTGATTTATA *** ** * * 52740384 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACA 1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGATTTATA * 52740438 GAATTACCA 1 AAATTACCA 52740447 TTTTACCCTG Statistics Matches: 224, Mismatches: 52, Indels: 8 0.79 0.18 0.03 Matches are distributed among these distances: 53 2 0.01 54 184 0.82 55 38 0.17 ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32 Consensus pattern (54 bp): AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATA Found at i:52740251 original size:81 final size:80 Alignment explanation
Indices: 52740113--52740428 Score: 312 Period size: 81 Copynumber: 3.9 Consensus size: 80 52740103 TTAGTTTACC * * ** ** 52740113 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA 1 AAATTACTAAAATACCCTTTATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA 52740178 ATACCCATGGTTTGTA 66 ATACCC-TGGTTTGTA * * 52740194 AAATTACTAAAATACCCTTTATTTATAAAATTACCAATATACCCTTGGTTTGTAAAATTACCAAA 1 AAATTACTAAAATACCCTTTATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA 52740259 ATACTCCTGGTTTGTA 66 ATAC-CCTGGTTTGTA * * * * * * 52740275 AAATTA-TCAAATTACCC-CTAGTTTGTAAAATAACCAAAATACCCCTGATTTGTGAAATTACCA 1 AAATTACT-AAAATACCCTTTA-TTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCA * * 52740338 AAATACCTCTGATTTTGTG 64 AAATACC-CTG-GTTTGTA * ** ** *** * ** 52740357 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAA 1 AAATTACTAAAATACCCTTTATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA * 52740422 GTACCCT 66 ATACCCT 52740429 TGATTTACAG Statistics Matches: 196, Mismatches: 32, Indels: 14 0.81 0.13 0.06 Matches are distributed among these distances: 80 4 0.02 81 131 0.67 82 58 0.30 83 3 0.02 ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32 Consensus pattern (80 bp): AAATTACTAAAATACCCTTTATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA ATACCCTGGTTTGTA Found at i:52740426 original size:27 final size:27 Alignment explanation
Indices: 52740113--52740434 Score: 269 Period size: 27 Copynumber: 11.9 Consensus size: 27 52740103 TTAGTTTACC * 52740113 AAATTACCAAAATACCC-CTGGTTTGTA 1 AAATTACCAAAATACCCTC-GATTTGTA * * ** 52740140 AAATTACCAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCTCGATTTGTA * 52740167 AAATTACCAAAATACCCAT-GGTTTGTA 1 AAATTACCAAAATACCC-TCGATTTGTA * ** * 52740194 AAATTACTAAAATACCCTTTATTTATA 1 AAATTACCAAAATACCCTCGATTTGTA * * * 52740221 AAATTACCAATATACCCTTGGTTTGTA 1 AAATTACCAAAATACCCTCGATTTGTA * 52740248 AAATTACCAAAATACTCCT-GGTTTGTA 1 AAATTACCAAAATAC-CCTCGATTTGTA * * * 52740275 AAATTATCAAATTACCC-CTAGTTTGTA 1 AAATTACCAAAATACCCTCGA-TTTGTA * * 52740302 AAATAACCAAAATACCC-CTGATTTGTG 1 AAATTACCAAAATACCCTC-GATTTGTA * 52740329 AAATTACCAAAATA-CCTCTGATTTTGTG 1 AAATTACCAAAATACCCTC-GA-TTTGTA ** ** 52740357 AAATTACTGAAATACCCTCGACCTGTA 1 AAATTACCAAAATACCCTCGATTTGTA *** * 52740384 AAATTATTGAAATACCCTCGACTTGTA 1 AAATTACCAAAATACCCTCGATTTGTA * * 52740411 AAATTACCAAAGTACCCTTGATTT 1 AAATTACCAAAATACCCTCGATTT 52740435 ACAGAATTAC Statistics Matches: 247, Mismatches: 38, Indels: 20 0.81 0.12 0.07 Matches are distributed among these distances: 26 5 0.02 27 213 0.86 28 25 0.10 29 4 0.02 ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33 Consensus pattern (27 bp): AAATTACCAAAATACCCTCGATTTGTA Found at i:52740442 original size:27 final size:26 Alignment explanation
Indices: 52740410--52740483 Score: 78 Period size: 26 Copynumber: 2.8 Consensus size: 26 52740400 CTCGACTTGT 52740410 AAAATTACCAAAGTACCCTTGATTTAC 1 AAAATTACCAAA-TACCCTTGATTTAC * ** 52740437 AGAATTACCATTTTACCC-TGATTTAC 1 AAAATTACCA-AATACCCTTGATTTAC * 52740463 AAAATTATCGAAATACCCTTG 1 AAAATTA-CCAAATACCCTTG 52740484 TAGGGTAGAA Statistics Matches: 37, Mismatches: 7, Indels: 6 0.74 0.14 0.12 Matches are distributed among these distances: 26 19 0.51 27 18 0.49 ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32 Consensus pattern (26 bp): AAAATTACCAAATACCCTTGATTTAC Found at i:52740479 original size:26 final size:25 Alignment explanation
Indices: 52740107--52740481 Score: 122 Period size: 27 Copynumber: 13.9 Consensus size: 25 52740097 AATACTTTAG * * 52740107 TTTACCAAATTACCAAAATACCCCTGG 1 TTTACAAAATTACC-AAATA-CCCTGA ** * 52740134 TTTGTAAAATTACCAAAATACCCTTGG 1 TTTACAAAATTACC-AAATACCC-TGA * 52740161 TTTACAAAATTACCAAAATACCCATGG 1 TTTACAAAATTACC-AAATACCC-TGA ** * * 52740188 TTTGTAAAATTACTAAAATACCCTTTA 1 TTTACAAAATTAC-CAAATACCC-TGA * * 52740215 TTTATAAAATTACCAATATACCCTTGG 1 TTTACAAAATTACCAA-ATACCC-TGA ** * 52740242 TTTGTAAAATTACCAAAATACTCCTGG 1 TTTACAAAATTACC-AAATAC-CCTGA ** * 52740269 TTTGTAAAATTATCAAATTACCCCT-A 1 TTTACAAAATTACCAAA-TA-CCCTGA ** * 52740295 GTTTGTAAAATAACCAAAATACCCCTGA 1 -TTTACAAAATTACC-AAATA-CCCTGA *** 52740323 TTTGTGAAATTACCAAAATACCTCTGA 1 TTTACAAAATTACC-AAATACC-CTGA *** * 52740350 TTTTGTGAAATTACTGAAATACCCTCGA 1 -TTTACAAAATTAC-CAAATACCCT-GA ** ** ** 52740378 CCTGTAAAATTATTGAAATACCCTCGA 1 TTTACAAAATTA-CCAAATACCCT-GA * ** 52740405 CTTGTAAAATTACCAAAGTACCCTTGA 1 TTTACAAAATTACCAAA-TACCC-TGA * ** 52740432 TTTACAGAATTACCATTTTACCCTGA 1 TTTACAAAATTACCA-AATACCCTGA * 52740458 TTTACAAAATTATCGAAATACCCT 1 TTTACAAAATTA-CCAAATACCCT 52740482 TGTAGGGTAG Statistics Matches: 288, Mismatches: 41, Indels: 39 0.78 0.11 0.11 Matches are distributed among these distances: 26 33 0.11 27 223 0.77 28 32 0.11 ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33 Consensus pattern (25 bp): TTTACAAAATTACCAAATACCCTGA Found at i:52740504 original size:27 final size:27 Alignment explanation
Indices: 52740472--52740821 Score: 361 Period size: 27 Copynumber: 13.0 Consensus size: 27 52740462 CAAAATTATC * * 52740472 GAAATACCCTTGTAGGGTAGAAATACT 1 GAAATACCCCTGTAGGGTAGAATTACT ** * * 52740499 GAAATACATCTATAGGGTAGAATTACC 1 GAAATACCCCTGTAGGGTAGAATTACT 52740526 GAAATACCCCTGTAGGGTAGAATTAGC- 1 GAAATACCCCTGTAGGGTAGAATTA-CT * * * 52740553 GAAATACCCCTGTAGGATCGAATTACC 1 GAAATACCCCTGTAGGGTAGAATTACT * 52740580 GAAATACCCCTGTAGGGTAGAATTACC 1 GAAATACCCCTGTAGGGTAGAATTACT 52740607 GAAATACCCCTGTAGGGTAGAATTA-T 1 GAAATACCCCTGTAGGGTAGAATTACT * * 52740633 CGTAATAACCCTGTAGGGTAGAATTA-T 1 -GAAATACCCCTGTAGGGTAGAATTACT * * * * 52740660 CGTAATAACCTTGTAGGGTAGAATTACC 1 -GAAATACCCCTGTAGGGTAGAATTACT * 52740688 GAAATACCCCTTGTAGGGTCGAATTA-T 1 GAAATACCCC-TGTAGGGTAGAATTACT * * 52740715 CGCAACACCCCTGTAGGGTAGAATTA-T 1 -GAAATACCCCTGTAGGGTAGAATTACT * 52740742 CGAAATACCCTTGTAGGGTAGAATTACT 1 -GAAATACCCCTGTAGGGTAGAATTACT * * * 52740770 AAAATACCCCTGTAGGGTGGAATTACC 1 GAAATACCCCTGTAGGGTAGAATTACT * * * * 52740797 GAGATA-CCTTGTGGGGTAAAATTAC 1 GAAATACCCCTGTAGGGTAGAATTAC 52740822 CATTTTGCCC Statistics Matches: 277, Mismatches: 39, Indels: 15 0.84 0.12 0.05 Matches are distributed among these distances: 26 16 0.06 27 237 0.86 28 24 0.09 ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26 Consensus pattern (27 bp): GAAATACCCCTGTAGGGTAGAATTACT Found at i:52740529 original size:54 final size:54 Alignment explanation
Indices: 52740465--52740821 Score: 418 Period size: 54 Copynumber: 6.6 Consensus size: 54 52740455 TGATTTACAA * * ** * 52740465 AATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAATACATCTATAGGGTAG 1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG * * * 52740519 AATTACCGAAATACCCCTGTAGGGTAGAATTAGC-GAAATACCCCTGTAGGATCG 1 AATTACCGAAATACCCTTGTAGGGTAGAATTA-CTGAAATACCCCTGTAGGGTAG * * 52740573 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG * * * * * 52740627 AATTATCGTAATAACCC-TGTAGGGTAGAATTA-TCGTAATAACCTTGTAGGGTAG 1 AATTACCGAAAT-ACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG * * * 52740681 AATTACCGAAATACCCCTTGTAGGGTCGAATTA-TCGCAACACCCCTGTAGGGTAG 1 AATTACCGAAATA-CCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG * * * 52740736 AATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGG 1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG * * * 52740790 AATTACCGAGATA-CCTTGTGGGGTAAAATTAC 1 AATTACCGAAATACCCTTGTAGGGTAGAATTAC 52740822 CATTTTGCCC Statistics Matches: 263, Mismatches: 33, Indels: 15 0.85 0.11 0.05 Matches are distributed among these distances: 53 19 0.07 54 194 0.74 55 50 0.19 ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26 Consensus pattern (54 bp): AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG Found at i:52740584 original size:81 final size:82 Alignment explanation
Indices: 52740465--52740822 Score: 447 Period size: 81 Copynumber: 4.4 Consensus size: 82 52740455 TGATTTACAA * * * * * 52740465 AATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAATACATC-TATAGGGTAGAATTACCGAA 1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACACCTTGTAGGGTAGAATTACCGAA 52740529 ATACCCCTGTAGGGTAG 66 ATACCCCTGTAGGGTAG * * * * 52740546 AATTAGCGAAATACCCCTGTAGGATCGAATTACCGAAATAC-CCCTGTAGGGTAGAATTACCGAA 1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACACCTTGTAGGGTAGAATTACCGAA 52740610 ATACCCCTGTAGGGTAG 66 ATACCCCTGTAGGGTAG * * * * 52740627 AATTATCGTAATAACCCTGTAGGGTAGAATTATCGTAATA-ACCTTGTAGGGTAGAATTACCGAA 1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACACCTTGTAGGGTAGAATTACCGAA * 52740691 ATACCCCTTGTAGGGTCG 66 ATACCCC-TGTAGGGTAG * * * ** 52740709 AATTATCGCAACACCCCTGTAGGGTAGAATTATCGAAATAC-CCTTGTAGGGTAGAATTACTAAA 1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACACCTTGTAGGGTAGAATTACCGAA * 52740773 ATACCCCTGTAGGGTGG 66 ATACCCCTGTAGGGTAG * * * * * 52740790 AATTACCGAGATA-CCTTGTGGGGTAAAATTACC 1 AATTATCGAAATACCCCTGTAGGGTAGAATTACC 52740823 ATTTTGCCCC Statistics Matches: 241, Mismatches: 32, Indels: 9 0.85 0.11 0.03 Matches are distributed among these distances: 80 17 0.07 81 151 0.63 82 73 0.30 ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26 Consensus pattern (82 bp): AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACACCTTGTAGGGTAGAATTACCGAA ATACCCCTGTAGGGTAG Found at i:52741715 original size:19 final size:19 Alignment explanation
Indices: 52741693--52741750 Score: 58 Period size: 19 Copynumber: 3.4 Consensus size: 19 52741683 TTTTGATTTT 52741693 TGATTCTGTTACTTGATAA 1 TGATTCTGTTACTTGATAA 52741712 TGATTCTG--A-TT--T-- 1 TGATTCTGTTACTTGATAA * 52741724 TGATTCTGTTACCTGATAA 1 TGATTCTGTTACTTGATAA 52741743 TGATTCTG 1 TGATTCTG 52741751 ATTTTGATTC Statistics Matches: 31, Mismatches: 1, Indels: 14 0.67 0.02 0.30 Matches are distributed among these distances: 12 8 0.26 14 2 0.06 15 1 0.03 16 2 0.06 17 2 0.06 19 16 0.52 ACGTcount: A:0.22, C:0.12, G:0.17, T:0.48 Consensus pattern (19 bp): TGATTCTGTTACTTGATAA Found at i:52741727 original size:31 final size:31 Alignment explanation
Indices: 52741690--52741772 Score: 157 Period size: 31 Copynumber: 2.7 Consensus size: 31 52741680 ACATTTTGAT * 52741690 TTTTGATTCTGTTACTTGATAATGATTCTGA 1 TTTTGATTCTGTTACCTGATAATGATTCTGA 52741721 TTTTGATTCTGTTACCTGATAATGATTCTGA 1 TTTTGATTCTGTTACCTGATAATGATTCTGA 52741752 TTTTGATTCTGTTACCTGATA 1 TTTTGATTCTGTTACCTGATA 52741773 CAGAACTGAT Statistics Matches: 51, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 31 51 1.00 ACGTcount: A:0.22, C:0.12, G:0.16, T:0.51 Consensus pattern (31 bp): TTTTGATTCTGTTACCTGATAATGATTCTGA Found at i:52741809 original size:18 final size:18 Alignment explanation
Indices: 52741778--52741812 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 52741768 TGATACAGAA 52741778 CTGATACTAATTCTGATT 1 CTGATACTAATTCTGATT * * 52741796 CTGATTCTAGTTCTGAT 1 CTGATACTAATTCTGAT 52741813 AATGTTTCTT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 18 15 1.00 ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46 Consensus pattern (18 bp): CTGATACTAATTCTGATT Found at i:52748830 original size:23 final size:23 Alignment explanation
Indices: 52748804--52748862 Score: 109 Period size: 23 Copynumber: 2.6 Consensus size: 23 52748794 ATTGTAGTGT * 52748804 AGCTGCTAATAGTAATGCAGCAA 1 AGCTGCTAATAGTAACGCAGCAA 52748827 AGCTGCTAATAGTAACGCAGCAA 1 AGCTGCTAATAGTAACGCAGCAA 52748850 AGCTGCTAATAGT 1 AGCTGCTAATAGT 52748863 GATAGGCGTA Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 23 35 1.00 ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22 Consensus pattern (23 bp): AGCTGCTAATAGTAACGCAGCAA Found at i:52753168 original size:50 final size:51 Alignment explanation
Indices: 52753093--52753198 Score: 160 Period size: 50 Copynumber: 2.1 Consensus size: 51 52753083 TATGGCAACC * * * 52753093 AGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAGTGA-A 1 AGTGATAAGCGATAGCTTCAGCTACACTTATCTAATCAAGGACAAATGACA ** 52753143 AGTGATAAGCGATAGCTTGGGCTACACTTATCTAATCAAGGACAAATGACA 1 AGTGATAAGCGATAGCTTCAGCTACACTTATCTAATCAAGGACAAATGACA 52753194 AGTGA 1 AGTGA 52753199 AAAATGGTAG Statistics Matches: 50, Mismatches: 5, Indels: 1 0.89 0.09 0.02 Matches are distributed among these distances: 50 44 0.88 51 6 0.12 ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25 Consensus pattern (51 bp): AGTGATAAGCGATAGCTTCAGCTACACTTATCTAATCAAGGACAAATGACA Found at i:52753218 original size:51 final size:50 Alignment explanation
Indices: 52753103--52753218 Score: 151 Period size: 50 Copynumber: 2.3 Consensus size: 50 52753093 AGTGATAAGT * * * * * 52753103 GATAGCTTCAGCTACACTTATCTGATCAAGGACAAGTGAAAGTGATAAGC 1 GATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGAAAGTGAAAAAC * * 52753153 GATAGCTTGGGCTACACTTATCTAATCAAGGACAAATGACAAGTGAAAAAT 1 GATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA-AAGTGAAAAAC * 52753204 GGTAGCTTCGGCTAC 1 GATAGCTTCGGCTAC 52753219 CTGATCAGTG Statistics Matches: 56, Mismatches: 9, Indels: 1 0.85 0.14 0.02 Matches are distributed among these distances: 50 35 0.62 51 21 0.38 ACGTcount: A:0.35, C:0.18, G:0.22, T:0.24 Consensus pattern (50 bp): GATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGAAAGTGAAAAAC Found at i:52753232 original size:31 final size:31 Alignment explanation
Indices: 52753194--52753339 Score: 247 Period size: 31 Copynumber: 4.7 Consensus size: 31 52753184 ACAAATGACA * 52753194 AGTGAAAAATGGTAGCTTCGGCTACCTGATC 1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC * 52753225 AGTGAAAAGTGGTAGCTTCGGCTACTTGATC 1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC 52753256 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC 1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC * * 52753287 AGTGAAAAATGGTAGCTCCGGCTACCTGATC 1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC * 52753318 AGTGAATAGTGGTAGCTTCGGC 1 AGTGAAAAGTGGTAGCTTCGGC 52753340 AACAAGTGAC Statistics Matches: 107, Mismatches: 8, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 31 107 1.00 ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26 Consensus pattern (31 bp): AGTGAAAAGTGGTAGCTTCGGCTACCTGATC Found at i:52753498 original size:49 final size:49 Alignment explanation
Indices: 52753425--52753531 Score: 198 Period size: 49 Copynumber: 2.2 Consensus size: 49 52753415 ACCATATCTG 52753425 GAATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT 1 GAATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT 52753474 G-ATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT 1 GAATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT 52753523 GAATATGTG 1 GAATATGTG 52753532 TAAGACCATA Statistics Matches: 56, Mismatches: 0, Indels: 3 0.95 0.00 0.05 Matches are distributed among these distances: 48 10 0.18 49 39 0.70 50 7 0.12 ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31 Consensus pattern (49 bp): GAATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT Found at i:52753533 original size:42 final size:42 Alignment explanation
Indices: 52753474--52753601 Score: 168 Period size: 42 Copynumber: 3.0 Consensus size: 42 52753464 ATCGATATGT * * * 52753474 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATC 1 GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC * 52753516 GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCTTC 1 GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC * * ** 52753558 -ATTATGTAAAGATGTGTAAGACCATAGTTGAACTATGGCATC 1 GA-TATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC 52753600 GA 1 GA 52753602 GAAAACGAAG Statistics Matches: 75, Mismatches: 9, Indels: 3 0.86 0.10 0.03 Matches are distributed among these distances: 41 1 0.01 42 73 0.97 43 1 0.01 ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30 Consensus pattern (42 bp): GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC Found at i:52754298 original size:22 final size:27 Alignment explanation
Indices: 52754253--52754305 Score: 71 Period size: 26 Copynumber: 2.1 Consensus size: 27 52754243 TAAATTGATT 52754253 AATAAATGTATTAAAATTATGGTGA-A 1 AATAAATGTATTAAAATTATGGTGAGA 52754279 AATAAATG-ATT-AAA-TA-GGTGAGA 1 AATAAATGTATTAAAATTATGGTGAGA 52754302 AATA 1 AATA 52754306 TGGCTTGAAA Statistics Matches: 26, Mismatches: 0, Indels: 5 0.84 0.00 0.16 Matches are distributed among these distances: 22 5 0.19 23 7 0.27 24 3 0.12 25 3 0.12 26 8 0.31 ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30 Consensus pattern (27 bp): AATAAATGTATTAAAATTATGGTGAGA Found at i:52767089 original size:39 final size:40 Alignment explanation
Indices: 52767044--52767186 Score: 164 Period size: 39 Copynumber: 3.6 Consensus size: 40 52767034 TGTTCGAGTA * 52767044 ATATCCGGGCTAAG-CCCGAAGGCAATTGGGCGAGTTATG 1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTATG * * * 52767083 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAATTGTG 1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTATG * ** * ** 52767122 ATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTACC 1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTATG * * 52767162 ATAACCGGGCTATGTCCCGAAGGCA 1 ATATCCGGGCTAAGTCCCGAAGGCA 52767187 TTTGAACGAG Statistics Matches: 86, Mismatches: 17, Indels: 1 0.83 0.16 0.01 Matches are distributed among these distances: 39 48 0.56 40 38 0.44 ACGTcount: A:0.24, C:0.23, G:0.30, T:0.22 Consensus pattern (40 bp): ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTATG Found at i:52768854 original size:93 final size:93 Alignment explanation
Indices: 52768742--52768912 Score: 306 Period size: 93 Copynumber: 1.8 Consensus size: 93 52768732 GCCCATAAGT * * * 52768742 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 52768807 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 52768835 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 52768900 CGAGTTCGGATGC 66 CGAGTTCGGATGC 52768913 TCAACCATCC Statistics Matches: 74, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 93 74 1.00 ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:52768928 original size:46 final size:46 Alignment explanation
Indices: 52768734--52768914 Score: 224 Period size: 46 Copynumber: 3.9 Consensus size: 46 52768724 TGTAACCCGC * * * 52768734 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT * * * 52768780 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT * * 52768830 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT * 52768873 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC 52768915 AACCATCCTA Statistics Matches: 114, Mismatches: 14, Indels: 14 0.80 0.10 0.10 Matches are distributed among these distances: 43 3 0.03 44 1 0.01 45 2 0.02 46 71 0.62 47 31 0.27 48 2 0.02 49 1 0.01 50 3 0.03 ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT Found at i:52777262 original size:39 final size:39 Alignment explanation
Indices: 52777215--52777397 Score: 240 Period size: 39 Copynumber: 4.6 Consensus size: 39 52777205 AATGTTCGAG 52777215 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA * 52777254 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA * * * 52777293 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA * ** * 52777332 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA 1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA ** * * 52777372 CCATAACCGGGCTATGTCCCGAAGGC 1 TGATATCCGGGCTAAG-CCCGAAGGC 52777398 GTTTGAACGA Statistics Matches: 126, Mismatches: 17, Indels: 1 0.88 0.12 0.01 Matches are distributed among these distances: 39 88 0.70 40 38 0.30 ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23 Consensus pattern (39 bp): TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA Found at i:52779116 original size:40 final size:40 Alignment explanation
Indices: 52779061--52779236 Score: 234 Period size: 40 Copynumber: 4.5 Consensus size: 40 52779051 GGATGATAAT * * * 52779061 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC 52779101 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC * 52779141 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC * * 52779181 CGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC * * 52779220 C-GGTTAAATCCCGAAGG 1 CGGGCTAAGTCCCGAAGG 52779237 TACTTGGCTT Statistics Matches: 124, Mismatches: 10, Indels: 6 0.89 0.07 0.04 Matches are distributed among these distances: 38 15 0.12 39 16 0.13 40 93 0.75 ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24 Consensus pattern (40 bp): CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC Found at i:52784279 original size:27 final size:27 Alignment explanation
Indices: 52784241--52784581 Score: 335 Period size: 27 Copynumber: 12.6 Consensus size: 27 52784231 TTAATTTACC 52784241 AAATTACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * ** * * * 52784268 TAATCAATAAAATAACCTTGGTTTATA 1 AAATTACCAAAATACCCCTGGTTTGTA 52784295 AAATTACCAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * ** 52784322 AAATTACCAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCCTGGTTTGTA * * 52784349 AAATTACCAAACTACCCCTGGTTTATA 1 AAATTACCAAAATACCCCTGGTTTGTA * * * * 52784376 AAATTACTAAAATACCCTTTGTTTATA 1 AAATTACCAAAATACCCCTGGTTTGTA * * 52784403 AAATTACCAAAATACCCTTAGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * 52784430 AAATTACCAAAATACCCTTAGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * 52784457 AAATTACCAAAATACCCATTGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTA * * * 52784484 AAATTACCAAAATACCCCTGATTTCTG 1 AAATTACCAAAATACCCCTGGTTTGTA ** ** * 52784511 AAATTACTGAAATA-CCCTCGACTTATA 1 AAATTACCAAAATACCCCT-GGTTTGTA ** ** 52784538 AAATTATTAAAATA-CCCTCGACTTGTA 1 AAATTACCAAAATACCCCT-GGTTTGTA * 52784565 AAATTACCAAAGTACCC 1 AAATTACCAAAATACCC 52784582 TTGATTTACA Statistics Matches: 267, Mismatches: 45, Indels: 3 0.85 0.14 0.01 Matches are distributed among these distances: 26 4 0.01 27 261 0.98 28 2 0.01 ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32 Consensus pattern (27 bp): AAATTACCAAAATACCCCTGGTTTGTA Found at i:52784334 original size:54 final size:54 Alignment explanation
Indices: 52784241--52784581 Score: 378 Period size: 54 Copynumber: 6.3 Consensus size: 54 52784231 TTAATTTACC * * ** * 52784241 AAATTACCAAAATACCCCTGGTTTGTATAATCAATAAAATAACCTTGGTTTATA 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA * 52784295 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA * * * * 52784349 AAATTACCAAACTACCCCTGGTTTATAAAATTACTAAAATACCCTTTGTTTATA 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA * * * * 52784403 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTA 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA * * * * * * 52784457 AAATTACCAAAATACCCATTGTTTGTAAAATTACCAAAATACCCCTGATTTCTG 1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA ** ** * ** * ** * 52784511 AAATTACTGAAATA-CCCTCGACTTATAAAATTATTAAAATACCCTCGACTTGTA 1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGGTTTATA * 52784565 AAATTACCAAAGTACCC 1 AAATTACCAAAATACCC 52784582 TTGATTTACA Statistics Matches: 243, Mismatches: 42, Indels: 3 0.84 0.15 0.01 Matches are distributed among these distances: 53 3 0.01 54 238 0.98 55 2 0.01 ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32 Consensus pattern (54 bp): AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA Found at i:52784582 original size:27 final size:27 Alignment explanation
Indices: 52784241--52784636 Score: 268 Period size: 27 Copynumber: 14.7 Consensus size: 27 52784231 TTAATTTACC * 52784241 AAATTACCAAAATACCC-CTGGTTTGTA 1 AAATTACCAAAATACCCTC-GATTTGTA * * ** * * * * 52784268 TAATCAATAAAATAACCTTGGTTTATA 1 AAATTACCAAAATACCCTCGATTTGTA * 52784295 AAATTACCAAAATACCC-CTGGTTTGTA 1 AAATTACCAAAATACCCTC-GATTTGTA * * ** 52784322 AAATTACCAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCTCGATTTGTA * * * 52784349 AAATTACCAAACTACCC-CTGGTTTATA 1 AAATTACCAAAATACCCTC-GATTTGTA * * * 52784376 AAATTACTAAAATACCCTTTG-TTTATA 1 AAATTACCAAAATACCC-TCGATTTGTA * 52784403 AAATTACCAAAATACCCT-TAGTTTGTA 1 AAATTACCAAAATACCCTCGA-TTTGTA * 52784430 AAATTACCAAAATACCCT-TAGTTTGTA 1 AAATTACCAAAATACCCTCGA-TTTGTA * 52784457 AAATTACCAAAATACCCATTG-TTTGTA 1 AAATTACCAAAATACCC-TCGATTTGTA * * 52784484 AAATTACCAAAATACCC-CTGATTTCTG 1 AAATTACCAAAATACCCTC-GATTTGTA ** * * 52784511 AAATTACTGAAATACCCTCGACTTATA 1 AAATTACCAAAATACCCTCGATTTGTA ** * 52784538 AAATTATTAAAATACCCTCGACTTGTA 1 AAATTACCAAAATACCCTCGATTTGTA * * ** 52784565 AAATTACCAAAGTACCCTTGATTTACA 1 AAATTACCAAAATACCCTCGATTTGTA * ***** ** 52784592 GAATTACTGTTTTACCCTCGATTTACA 1 AAATTACCAAAATACCCTCGATTTGTA 52784619 AAATTACCAAAATACCCT 1 AAATTACCAAAATACCCT 52784637 TGTAGGGTAG Statistics Matches: 298, Mismatches: 58, Indels: 26 0.78 0.15 0.07 Matches are distributed among these distances: 26 2 0.01 27 293 0.98 28 3 0.01 ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32 Consensus pattern (27 bp): AAATTACCAAAATACCCTCGATTTGTA Found at i:52784599 original size:81 final size:80 Alignment explanation
Indices: 52784289--52784636 Score: 339 Period size: 81 Copynumber: 4.3 Consensus size: 80 52784279 ATAACCTTGG * * * 52784289 TTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATT 1 TTTATAAAATTACCAAAATA-CCCTCGTTTGTAAAATTACCAAAATACCCTTGATTTACAGAATT * * 52784354 AC-CAAACTACCC-CTGG 65 ACTGAAA-TACCCTC-GA * * * * 52784370 TTTATAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCTTAGTTTGTA-A-AA 1 TTTATAAAATTACCAAAATACCC-TCGTTTGTAAAATTACCAAAATACCCTT-GATT-TACAGAA ** * 52784433 TTACCAAAATACCCT-TA 63 TTACTGAAATACCCTCGA * * * * 52784450 GTTTGTAAAATTACCAAAATACCCATTGTTTGTAAAATTACCAAAATACCCCTGATTT-CTGAAA 1 -TTTATAAAATTACCAAAATACCC-TCGTTTGTAAAATTACCAAAATACCCTTGATTTACAG-AA 52784514 TTACTGAAATACCCTCGA 63 TTACTGAAATACCCTCGA * ** * * 52784532 CTTATAAAATTATTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACAGAATT 1 TTTATAAAATTACCAAAATACCCTCG-TTTGTAAAATTACCAAAATACCCTTGATTTACAGAATT *** 52784597 ACTGTTTTACCCTCGA 65 ACTGAAATACCCTCGA * 52784613 TTTACAAAATTACCAAAATACCCT 1 TTTATAAAATTACCAAAATACCCT 52784637 TGTAGGGTAG Statistics Matches: 222, Mismatches: 33, Indels: 24 0.80 0.12 0.09 Matches are distributed among these distances: 79 1 0.00 80 8 0.04 81 201 0.91 82 10 0.05 83 2 0.01 ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33 Consensus pattern (80 bp): TTTATAAAATTACCAAAATACCCTCGTTTGTAAAATTACCAAAATACCCTTGATTTACAGAATTA CTGAAATACCCTCGA Found at i:52784653 original size:27 final size:27 Alignment explanation
Indices: 52784620--52784841 Score: 234 Period size: 27 Copynumber: 8.3 Consensus size: 27 52784610 CGATTTACAA * 52784620 AATTACCAAAATACCCTTGTAGGGTAG 1 AATTACCGAAATACCCTTGTAGGGTAG * * 52784647 AAATACCAAAATACCGC-TGTAGGGTAG 1 AATTACCGAAATACC-CTTGTAGGGTAG * * * * 52784674 AATTACTGAAATACCCCTCTAAGGTAG 1 AATTACCGAAATACCCTTGTAGGGTAG * * * 52784701 AATTATCGCAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCTTGTAGGGTAG 52784728 AATTACCGAAATACCCTTGTAGGGTAG 1 AATTACCGAAATACCCTTGTAGGGTAG * 52784755 AATTACCGAAATA-CCTCTATAGGGTAG 1 AATTACCGAAATACCCT-TGTAGGGTAG ** * * * 52784782 AATTACTAAAACACCCCTGTAGGGTGG 1 AATTACCGAAATACCCTTGTAGGGTAG * * * 52784809 AATTACCGAGATA-CCTTGTGGGGTAA 1 AATTACCGAAATACCCTTGTAGGGTAG 52784835 AATTACC 1 AATTACC 52784842 ATTTTGCCCC Statistics Matches: 162, Mismatches: 29, Indels: 9 0.81 0.14 0.05 Matches are distributed among these distances: 26 20 0.12 27 139 0.86 28 3 0.02 ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25 Consensus pattern (27 bp): AATTACCGAAATACCCTTGTAGGGTAG Found at i:52785321 original size:22 final size:21 Alignment explanation
Indices: 52785268--52785332 Score: 58 Period size: 22 Copynumber: 3.0 Consensus size: 21 52785258 TTAAAGCCTT * * 52785268 CTGATTATGGCTTTGTGTCAAC 1 CTGA-TATGGCTCTGTGCCAAC * 52785290 CTACATATGGCTCTGTGCCAAC 1 CT-GATATGGCTCTGTGCCAAC * * 52785312 CTGATGATGGATGTGTGCCAA 1 CTGAT-ATGGCTCTGTGCCAA 52785333 ACGTATTTGC Statistics Matches: 35, Mismatches: 6, Indels: 4 0.78 0.13 0.09 Matches are distributed among these distances: 21 2 0.06 22 32 0.91 23 1 0.03 ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32 Consensus pattern (21 bp): CTGATATGGCTCTGTGCCAAC Found at i:52785734 original size:19 final size:19 Alignment explanation
Indices: 52785712--52785769 Score: 58 Period size: 19 Copynumber: 3.4 Consensus size: 19 52785702 TTCTGATTTT 52785712 TGATTCTGTTACCTGATAC 1 TGATTCTGTTACCTGATAC * 52785731 TGATTCTG--A--T--T-T 1 TGATTCTGTTACCTGATAC 52785743 TGATTCTGTTACCTGATAC 1 TGATTCTGTTACCTGATAC 52785762 TGATTCTG 1 TGATTCTG 52785770 ATTTTGATTC Statistics Matches: 30, Mismatches: 2, Indels: 14 0.65 0.04 0.30 Matches are distributed among these distances: 12 8 0.27 13 1 0.03 14 1 0.03 15 1 0.03 16 1 0.03 17 1 0.03 18 1 0.03 19 16 0.53 ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47 Consensus pattern (19 bp): TGATTCTGTTACCTGATAC Found at i:52785739 original size:6 final size:6 Alignment explanation
Indices: 52785701--52785851 Score: 105 Period size: 6 Copynumber: 24.3 Consensus size: 6 52785691 TTGCATTCAC * * * 52785701 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG 1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG * * * * 52785751 -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG 1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG * 52785801 ATTCTG ATTCTG -TCACTTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG 1 ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG 52785850 AT 1 AT 52785852 AATGTTTCTT Statistics Matches: 114, Mismatches: 16, Indels: 30 0.71 0.10 0.19 Matches are distributed among these distances: 5 8 0.07 6 84 0.74 7 18 0.16 8 4 0.04 ACGTcount: A:0.19, C:0.16, G:0.16, T:0.50 Consensus pattern (6 bp): ATTCTG Found at i:52785747 original size:31 final size:31 Alignment explanation
Indices: 52785701--52785842 Score: 221 Period size: 31 Copynumber: 4.5 Consensus size: 31 52785691 TTGCATTCAC 52785701 ATTCTGATTTTTGATTCTGTTACCTGATACTG 1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG 52785733 ATTCTGATTTTGATTCTGTTACCTGATACTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG 52785764 ATTCTGATTTTGATTCTGTTACCTGATACTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG * * * * * 52785795 ATTTTGATTCTGATTCTGTCACTTGATTCTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTG * 52785826 ATTCTGATTCTGATTCT 1 ATTCTGATTTTGATTCT 52785843 AGTTCTGATA Statistics Matches: 104, Mismatches: 6, Indels: 1 0.94 0.05 0.01 Matches are distributed among these distances: 31 97 0.93 32 7 0.07 ACGTcount: A:0.18, C:0.16, G:0.15, T:0.50 Consensus pattern (31 bp): ATTCTGATTTTGATTCTGTTACCTGATACTG Found at i:52785803 original size:62 final size:62 Alignment explanation
Indices: 52785701--52785867 Score: 221 Period size: 62 Copynumber: 2.7 Consensus size: 62 52785691 TTGCATTCAC * * 52785701 ATTCTGATTTTTGATTCTGTTACCTGATACTGATTCTGATTTTGATTCTGTTACCTGATACTG 1 ATTCTGA-TTTTGATTCTGTTACCTGATACTGATTCTGATTCTGATTCTGTCACCTGATACTG * * * 52785764 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTGATTCTGTCACTTGATTCTG 1 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGATTCTGTCACCTGATACTG * * * * 52785826 ATTCTGATTCTGATTCTAGTT--CTGATAATGTTTCTTATTCTG 1 ATTCTGATTTTGATTCT-GTTACCTGATACTGATTCTGATTCTG 52785868 TAATGGGTTA Statistics Matches: 93, Mismatches: 10, Indels: 4 0.87 0.09 0.04 Matches are distributed among these distances: 61 17 0.18 62 66 0.71 63 10 0.11 ACGTcount: A:0.19, C:0.16, G:0.16, T:0.50 Consensus pattern (62 bp): ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGATTCTGTCACCTGATACTG Found at i:52804565 original size:34 final size:34 Alignment explanation
Indices: 52804464--52804566 Score: 134 Period size: 37 Copynumber: 2.9 Consensus size: 34 52804454 TAACAATAAA * * * 52804464 TTATTCCAGCAACTGAATTAACTAAGATAAGCAT 1 TTATTCCAGCAACTCAATTAACTAAGATGAGTAT * * 52804498 TTATTCTAGCAACTCAATTAATAACTAAAATGAGTAT 1 TTATTCCAGCAACTCAA-T--TAACTAAGATGAGTAT 52804535 TTATTCCAGCAACTCAATTAACTAAGATGAGT 1 TTATTCCAGCAACTCAATTAACTAAGATGAGT 52804567 TTAATTAAAA Statistics Matches: 59, Mismatches: 7, Indels: 6 0.82 0.10 0.08 Matches are distributed among these distances: 34 28 0.47 35 1 0.02 36 1 0.02 37 29 0.49 ACGTcount: A:0.41, C:0.17, G:0.11, T:0.32 Consensus pattern (34 bp): TTATTCCAGCAACTCAATTAACTAAGATGAGTAT Found at i:52808757 original size:24 final size:24 Alignment explanation
Indices: 52808725--52808836 Score: 113 Period size: 24 Copynumber: 4.7 Consensus size: 24 52808715 GGCTATCTCA * 52808725 AATGCACTATGTGTGCAATTTATT 1 AATGCACTATGTGTGCAATTTACT * 52808749 AATGCACTATGTGTGCGATTTACT 1 AATGCACTATGTGTGCAATTTACT * * 52808773 -ATGGCACTATGTGTGCGATTTGCT 1 AAT-GCACTATGTGTGCAATTTACT ** * 52808797 -ATGGCACTATGTGTGCGAACATAAT 1 AAT-GCACTATGTGTGC-AATTTACT 52808822 AA-GCACTATGTGTGC 1 AATGCACTATGTGTGC 52808837 CACATTCGGT Statistics Matches: 77, Mismatches: 8, Indels: 6 0.85 0.09 0.07 Matches are distributed among these distances: 23 2 0.03 24 71 0.92 25 3 0.04 26 1 0.01 ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35 Consensus pattern (24 bp): AATGCACTATGTGTGCAATTTACT Found at i:52816169 original size:39 final size:39 Alignment explanation
Indices: 52816088--52816211 Score: 176 Period size: 39 Copynumber: 3.2 Consensus size: 39 52816078 TATGGTAACC ** * 52816088 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT 1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT * * 52816128 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * * 52816167 CGCACAATTTCCTTCGGGCTTAGCCCGGATATCACAATT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 52816206 CGCACA 1 CGCACA 52816212 TTCATTCACA Statistics Matches: 75, Mismatches: 9, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 39 59 0.79 40 16 0.21 ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23 Consensus pattern (39 bp): CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT Found at i:52819810 original size:24 final size:24 Alignment explanation
Indices: 52819778--52819840 Score: 117 Period size: 24 Copynumber: 2.6 Consensus size: 24 52819768 TATCTCAAAT 52819778 GCACTATGTGTGCGATTTACTATG 1 GCACTATGTGTGCGATTTACTATG * 52819802 GCACTATGTGTGCGATTTGCTATG 1 GCACTATGTGTGCGATTTACTATG 52819826 GCACTATGTGTGCGA 1 GCACTATGTGTGCGA 52819841 ACATAATAAG Statistics Matches: 38, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 24 38 1.00 ACGTcount: A:0.19, C:0.17, G:0.29, T:0.35 Consensus pattern (24 bp): GCACTATGTGTGCGATTTACTATG Found at i:52822675 original size:41 final size:40 Alignment explanation
Indices: 52822542--52822765 Score: 281 Period size: 40 Copynumber: 5.6 Consensus size: 40 52822532 AACCCAAGTA * * * * 52822542 CCTTCGGGATTTA-ACCGGATATAG-CAAATTGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG * * * 52822581 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 52822621 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AAATG * * * 52822662 CCTTCGGGTCTTAGCCCGGATATCGTCACTAGCGCAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG * * 52822702 CCTTCGGGACTTAACCCGGATATAGTGACTAGCACAAAGTG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA-TG * * 52822743 CCTTCGGGTCTTAGCCCAGATAT 1 CCTTCGGGACTTAGCCCGGATAT 52822766 CATCCGAATA Statistics Matches: 161, Mismatches: 20, Indels: 6 0.86 0.11 0.03 Matches are distributed among these distances: 39 11 0.07 40 91 0.57 41 59 0.37 ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG Found at i:52822766 original size:81 final size:80 Alignment explanation
Indices: 52822542--52822766 Score: 299 Period size: 81 Copynumber: 2.8 Consensus size: 80 52822532 AACCCAAGTA * * * * * * * 52822542 CCTTCGGGATTTAA-CCGGATATAGCAAATTGCACAAATGCCTTTGGGACTTAGCCCGGATATAG 1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCG * 52822606 TAACTCGCACAAATG 66 TAACTAGCACAAATG * * 52822621 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATC 1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCAC-AAATGCCTTCGGGTCTTAGCCCGGATATC * * 52822686 GTCACTAGCGCAAATG 65 GTAACTAGCACAAATG * * 52822702 CCTTCGGGACTTAACCCGGATATAGTGACTAGCACAAAGTGCCTTCGGGTCTTAGCCCAGATATC 1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC 52822767 ATCCGAATAA Statistics Matches: 128, Mismatches: 15, Indels: 4 0.87 0.10 0.03 Matches are distributed among these distances: 79 12 0.09 80 19 0.15 81 97 0.76 ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24 Consensus pattern (80 bp): CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCG TAACTAGCACAAATG Found at i:52828148 original size:79 final size:81 Alignment explanation
Indices: 52828047--52828231 Score: 227 Period size: 79 Copynumber: 2.3 Consensus size: 81 52828037 ACGACTCGCT ** * * 52828047 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC 1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC * * 52828110 GGGTTTAGTAACTT-GCA 64 GGATATAGTAACTTAGCA * ** 52828127 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG 1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG * 52828191 ATATAGTCACTTAGCA 66 ATATAGTAACTTAGCA 52828207 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 52828232 CATCATTCGA Statistics Matches: 91, Mismatches: 10, Indels: 8 0.83 0.09 0.07 Matches are distributed among these distances: 78 3 0.03 79 54 0.59 80 34 0.37 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24 Consensus pattern (81 bp): CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG ATATAGTAACTTAGCA Found at i:52828231 original size:40 final size:39 Alignment explanation
Indices: 52828040--52828231 Score: 163 Period size: 40 Copynumber: 4.8 Consensus size: 39 52828030 GGATATAACG * ** * * 52828040 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG 1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA * * * * 52828080 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA 1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA * * * 52828120 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA 1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA * * * * 52828159 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC 1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA * 52828199 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA 1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA 52828232 CATCATTCGA Statistics Matches: 121, Mismatches: 24, Indels: 14 0.76 0.15 0.09 Matches are distributed among these distances: 38 2 0.02 39 30 0.25 40 79 0.65 41 10 0.08 ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24 Consensus pattern (39 bp): ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA Found at i:52836173 original size:79 final size:81 Alignment explanation
Indices: 52836072--52836256 Score: 227 Period size: 79 Copynumber: 2.3 Consensus size: 81 52836062 ACGACTCGCT ** * * 52836072 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC 1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC * * 52836135 GGGTTTAGTAACTT-GCA 64 GGATATAGTAACTTAGCA * ** 52836152 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG 1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG * 52836216 ATATAGTCACTTAGCA 66 ATATAGTAACTTAGCA 52836232 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 52836257 CATCATTCGA Statistics Matches: 91, Mismatches: 10, Indels: 8 0.83 0.09 0.07 Matches are distributed among these distances: 78 3 0.03 79 54 0.59 80 34 0.37 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24 Consensus pattern (81 bp): CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG ATATAGTAACTTAGCA Found at i:52836256 original size:40 final size:39 Alignment explanation
Indices: 52836065--52836256 Score: 163 Period size: 40 Copynumber: 4.8 Consensus size: 39 52836055 GGATATAACG * ** * * 52836065 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG 1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA * * * * 52836105 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA 1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA * * * 52836145 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA 1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA * * * * 52836184 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC 1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA * 52836224 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA 1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA 52836257 CATCATTCGA Statistics Matches: 121, Mismatches: 24, Indels: 14 0.76 0.15 0.09 Matches are distributed among these distances: 38 2 0.02 39 30 0.25 40 79 0.65 41 10 0.08 ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24 Consensus pattern (39 bp): ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA Found at i:52841013 original size:6 final size:7 Alignment explanation
Indices: 52840996--52841024 Score: 58 Period size: 7 Copynumber: 4.1 Consensus size: 7 52840986 AAAAAAATTC 52840996 AAAAAAT 1 AAAAAAT 52841003 AAAAAAT 1 AAAAAAT 52841010 AAAAAAT 1 AAAAAAT 52841017 AAAAAAT 1 AAAAAAT 52841024 A 1 A 52841025 TATATATTTA Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 22 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (7 bp): AAAAAAT Found at i:52841655 original size:27 final size:27 Alignment explanation
Indices: 52841593--52841645 Score: 97 Period size: 27 Copynumber: 2.0 Consensus size: 27 52841583 TTATATTAAT 52841593 ACATAATTTTAATGTGTCTAGTTTAGA 1 ACATAATTTTAATGTGTCTAGTTTAGA * 52841620 ACATCATTTTAATGTGTCTAGTTTAG 1 ACATAATTTTAATGTGTCTAGTTTAG 52841646 GGACAAATTT Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 27 25 1.00 ACGTcount: A:0.30, C:0.09, G:0.15, T:0.45 Consensus pattern (27 bp): ACATAATTTTAATGTGTCTAGTTTAGA Found at i:52847215 original size:18 final size:18 Alignment explanation
Indices: 52847192--52847226 Score: 54 Period size: 18 Copynumber: 1.9 Consensus size: 18 52847182 CAAAGTTAAA 52847192 GCTCTC-CAAACATCACTC 1 GCTCTCGCAAACA-CACTC 52847210 GCTCTCGCAAACACACT 1 GCTCTCGCAAACACACT 52847227 TATTTTACCA Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 18 10 0.62 19 6 0.38 ACGTcount: A:0.29, C:0.43, G:0.09, T:0.20 Consensus pattern (18 bp): GCTCTCGCAAACACACTC Found at i:52854632 original size:40 final size:40 Alignment explanation
Indices: 52854583--52854790 Score: 222 Period size: 40 Copynumber: 5.2 Consensus size: 40 52854573 TCTTCGGAAT * * 52854583 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC * **** * 52854622 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC 1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC * * * * 52854662 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC * * * 52854702 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC ** * * 52854742 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC 52854782 TTAGCCCGG 1 TTAGCCCGG 52854791 GTATCATTCA Statistics Matches: 143, Mismatches: 23, Indels: 5 0.84 0.13 0.03 Matches are distributed among these distances: 39 5 0.03 40 136 0.95 41 2 0.01 ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26 Consensus pattern (40 bp): TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC Found at i:52863923 original size:37 final size:37 Alignment explanation
Indices: 52863873--52863943 Score: 142 Period size: 37 Copynumber: 1.9 Consensus size: 37 52863863 CGAAGTCTTA 52863873 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG 1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG 52863910 CCCGGACATAATCTCCACACGTAGTCATCGGGTC 1 CCCGGACATAATCTCCACACGTAGTCATCGGGTC 52863944 TCACCCGGAA Statistics Matches: 34, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 37 34 1.00 ACGTcount: A:0.23, C:0.34, G:0.23, T:0.21 Consensus pattern (37 bp): CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG Found at i:52863951 original size:37 final size:36 Alignment explanation
Indices: 52863871--52863957 Score: 138 Period size: 37 Copynumber: 2.3 Consensus size: 36 52863861 TACGAAGTCT 52863871 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC 1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC * 52863907 GTGCCCGGACATAATCTCCACACGTAGTCATCGGGTC 1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC 52863944 TCACCCGGAACATA 1 T-ACCCGG-ACATA 52863958 TTTCCAAGTT Statistics Matches: 46, Mismatches: 2, Indels: 3 0.90 0.04 0.06 Matches are distributed among these distances: 36 1 0.02 37 40 0.87 38 5 0.11 ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21 Consensus pattern (36 bp): TACCCGGACATAATCTCCACACGTAGTCATCGGGTC Found at i:52864098 original size:49 final size:49 Alignment explanation
Indices: 52864026--52864288 Score: 460 Period size: 49 Copynumber: 5.4 Consensus size: 49 52864016 TTTACCACAT * 52864026 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC * * 52864075 ATATATATACACTTTCACATTCATCACATTGGCCATGAGGCCTTATCAC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 52864124 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 52864173 -TATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 52864221 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC 52864270 ATATATATACACTTTCACA 1 ATATATATACACTTTCACA 52864289 AATTTTGATA Statistics Matches: 206, Mismatches: 5, Indels: 6 0.95 0.02 0.03 Matches are distributed among these distances: 48 49 0.24 49 156 0.76 50 1 0.00 ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34 Consensus pattern (49 bp): ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC Found at i:52864222 original size:97 final size:98 Alignment explanation
Indices: 52864026--52864288 Score: 460 Period size: 97 Copynumber: 2.7 Consensus size: 98 52864016 TTTACCACAT * 52864026 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC * 52864091 ACATTCATCACATTGGCCATGAGGCCTTATCAC 66 ACATTCATCACATCGGCCATGAGGCCTTATCAC 52864124 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC-CTTT 1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-TT * 52864186 TCACATTCATCACATCGGCCATTAGGCCTTATCAC 64 TCACATTCATCACATCGGCCATGAGGCCTTATCAC 52864221 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC 1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC 52864286 ACA 66 ACA 52864289 AATTTTGATA Statistics Matches: 157, Mismatches: 3, Indels: 10 0.92 0.02 0.06 Matches are distributed among these distances: 96 1 0.01 97 92 0.59 98 63 0.40 99 1 0.01 ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34 Consensus pattern (98 bp): ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC ACATTCATCACATCGGCCATGAGGCCTTATCAC Found at i:52867041 original size:40 final size:40 Alignment explanation
Indices: 52866900--52867082 Score: 194 Period size: 40 Copynumber: 4.6 Consensus size: 40 52866890 TCGAATGATG * * * 52866900 TCCGGGCTAAGTCCCGAAGGCCTT-GTGCTAAGTGACTATA 1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA * * * * 52866940 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA 1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA * * 52866980 TTCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA * * 52867019 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTACTATAA 1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA ** 52867060 -CCGGGCTTTGTCCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATT 52867083 AGAGTGAGCC Statistics Matches: 118, Mismatches: 20, Indels: 10 0.80 0.14 0.07 Matches are distributed among these distances: 39 32 0.27 40 79 0.67 41 7 0.06 ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA Found at i:52867065 original size:79 final size:81 Alignment explanation
Indices: 52866900--52867082 Score: 205 Period size: 79 Copynumber: 2.3 Consensus size: 81 52866890 TCGAATGATG * * * * 52866900 TCCGGGCTAAGTCCCGAAGGC-CTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT * 52866964 CGTGCGAGTTAATAAA 66 CGTGCAAGTTAATAAA * * ** 52866980 TTCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT * 52867042 TCGTGCAAGTTACTATAA 65 TCGTGCAAGTTAATA-AA ** 52867060 -CCGGGCTTTGTCCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATT 52867083 AGAGTGAGCC Statistics Matches: 86, Mismatches: 13, Indels: 8 0.80 0.12 0.07 Matches are distributed among these distances: 78 1 0.01 79 55 0.64 80 30 0.35 ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25 Consensus pattern (81 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT CGTGCAAGTTAATAAA Found at i:52870206 original size:40 final size:40 Alignment explanation
Indices: 52870157--52870364 Score: 213 Period size: 40 Copynumber: 5.2 Consensus size: 40 52870147 TCTTCGGAAT * * 52870157 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC * **** * * 52870196 TTAACCCGGAT-TTGGTATCTTGCACAAATACCTTCGGGTC 1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC * * * 52870236 TTAGCCCGGATATGACAACTCGCACAAATGCCTTCGGGTC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC * * * * 52870276 TTAGCCCGGATATAATCACAAGCATAAATGCCTTCGGGAC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC ** * * 52870316 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC 1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC 52870356 TTAGCCCGG 1 TTAGCCCGG 52870365 GTATCATTCA Statistics Matches: 141, Mismatches: 25, Indels: 5 0.82 0.15 0.03 Matches are distributed among these distances: 39 5 0.04 40 134 0.95 41 2 0.01 ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25 Consensus pattern (40 bp): TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC Found at i:52887034 original size:18 final size:17 Alignment explanation
Indices: 52887005--52887064 Score: 66 Period size: 18 Copynumber: 3.3 Consensus size: 17 52886995 AGGAGAATGA 52887005 GAAAAAGAAAAATGAGATT 1 GAAAAAG-AAAA-GAGATT * 52887024 GAAAAAGAAAAAGAAATT 1 GAAAAAG-AAAAGAGATT * 52887042 GAACAAGAAAAGAAGATT 1 GAAAAAGAAAAG-AGATT 52887060 GAAAA 1 GAAAA 52887065 GGAGAGTGAG Statistics Matches: 36, Mismatches: 4, Indels: 3 0.84 0.09 0.07 Matches are distributed among these distances: 17 5 0.14 18 19 0.53 19 12 0.33 ACGTcount: A:0.67, C:0.02, G:0.20, T:0.12 Consensus pattern (17 bp): GAAAAAGAAAAGAGATT Found at i:52887227 original size:77 final size:77 Alignment explanation
Indices: 52887142--52887296 Score: 292 Period size: 77 Copynumber: 2.0 Consensus size: 77 52887132 TTCGAAAAAG * 52887142 AAGCGAGTGAAAATGAAGAACGACAGCAAGAAAAAGCGAGGAGTGTTTCAACTAACTGAACTAAA 1 AAGCGAGTGAAAATGAAGAACGACAACAAGAAAAAGCGAGGAGTGTTTCAACTAACTGAACTAAA 52887207 AGTTCTCCTTGT 66 AGTTCTCCTTGT * 52887219 AAGCGAGTGAAAATGAAGAACGACAACAAGAAAAAGCGAGGAGTGTTTCAACTAACTGAACTACA 1 AAGCGAGTGAAAATGAAGAACGACAACAAGAAAAAGCGAGGAGTGTTTCAACTAACTGAACTAAA 52887284 AGTTCTCCTTGT 66 AGTTCTCCTTGT 52887296 A 1 A 52887297 TTGTTTCTTG Statistics Matches: 76, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 77 76 1.00 ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19 Consensus pattern (77 bp): AAGCGAGTGAAAATGAAGAACGACAACAAGAAAAAGCGAGGAGTGTTTCAACTAACTGAACTAAA AGTTCTCCTTGT Found at i:52889797 original size:24 final size:24 Alignment explanation
Indices: 52889746--52889810 Score: 76 Period size: 24 Copynumber: 2.6 Consensus size: 24 52889736 ACAACCTATT * * 52889746 TTAATGTGTCTTAAGTTCCAGCTGAA 1 TTAATATGTCTTAA--TCCAGCTAAA * 52889772 TTAATATGTCTTAATGCAGCTAAA 1 TTAATATGTCTTAATCCAGCTAAA * 52889796 TTAATTTGTCTTAAT 1 TTAATATGTCTTAAT 52889811 TCCATTTAAT Statistics Matches: 35, Mismatches: 4, Indels: 2 0.85 0.10 0.05 Matches are distributed among these distances: 24 22 0.63 26 13 0.37 ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43 Consensus pattern (24 bp): TTAATATGTCTTAATCCAGCTAAA Found at i:52891704 original size:17 final size:17 Alignment explanation
Indices: 52891684--52891729 Score: 51 Period size: 17 Copynumber: 2.6 Consensus size: 17 52891674 TAAAAAGAGC 52891684 AAGAAAAAAAGAATG-AA 1 AAGAAAAAAAGAA-GAAA 52891701 AAGAAAAAGAA-AAGAAA 1 AAGAAAAA-AAGAAGAAA 52891718 AAGAAAAGAAAG 1 AAGAAAA-AAAG 52891730 TGGAAAAAAA Statistics Matches: 25, Mismatches: 0, Indels: 7 0.78 0.00 0.22 Matches are distributed among these distances: 16 1 0.04 17 21 0.84 18 3 0.12 ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02 Consensus pattern (17 bp): AAGAAAAAAAGAAGAAA Found at i:52891712 original size:11 final size:11 Alignment explanation
Indices: 52891684--52891728 Score: 65 Period size: 11 Copynumber: 4.0 Consensus size: 11 52891674 TAAAAAGAGC 52891684 AAGAAAA-AAA 1 AAGAAAAGAAA 52891694 GAATGAAAAGAAA 1 -AA-GAAAAGAAA 52891707 AAGAAAAGAAA 1 AAGAAAAGAAA 52891718 AAGAAAAGAAA 1 AAGAAAAGAAA 52891729 GTGGAAAAAA Statistics Matches: 32, Mismatches: 0, Indels: 4 0.89 0.00 0.11 Matches are distributed among these distances: 11 22 0.69 12 7 0.22 13 3 0.09 ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02 Consensus pattern (11 bp): AAGAAAAGAAA Found at i:52896223 original size:40 final size:41 Alignment explanation
Indices: 52896163--52896289 Score: 165 Period size: 40 Copynumber: 3.2 Consensus size: 41 52896153 TGGAATACAA 52896163 CCGGATA-TAACCACGT-GCACGAATGCCTTCGGGTCTTAGC 1 CCGGATAGTAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC * * 52896203 CCGGATAG-AACGACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATAGTAACCACTAGCACGAATGCCTTCGGGTCTTAGC * * 52896243 CCGGAT-GTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC 1 CCGGATAGTAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC 52896283 CCGGATA 1 CCGGATA 52896290 TAATTTCCAG Statistics Matches: 77, Mismatches: 5, Indels: 9 0.85 0.05 0.10 Matches are distributed among these distances: 39 4 0.05 40 73 0.95 ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22 Consensus pattern (41 bp): CCGGATAGTAACCACTAGCACGAATGCCTTCGGGTCTTAGC Found at i:52898235 original size:40 final size:40 Alignment explanation
Indices: 52898029--52898225 Score: 313 Period size: 40 Copynumber: 4.9 Consensus size: 40 52898019 TTCGAATGAT * 52898029 ATCCGGGTTAATTCCAGAAGGCATTTGTGCGAGTTACCAA 1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA * 52898069 ATCCGGGTTAATTCCCGAAGGCATTTGTGTGAGTTACCAA 1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA * 52898109 ATCTGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA 1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA * * 52898149 ATCCGGGTTAATTCCCGAAGGCAATTGTGTGAGTTACCAA 1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA * * * * 52898189 ATCCGGGTTAAGTCCCAAAGGCATTTGCGCGAATTAC 1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTAC 52898226 TATAACCGGG Statistics Matches: 144, Mismatches: 13, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 40 144 1.00 ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28 Consensus pattern (40 bp): ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA Found at i:52898245 original size:120 final size:120 Alignment explanation
Indices: 52898029--52898248 Score: 309 Period size: 120 Copynumber: 1.8 Consensus size: 120 52898019 TTCGAATGAT * * * 52898029 ATCCGGGTTAATTCCAGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATTCCCGAAGGCATT 1 ATCCGGGTTAATTCCAGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCATT * * * * * 52898094 TGTGTGAGTTACCAAATCTGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA 66 TGCGCGAATTACCAAATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACCAA * * 52898149 ATCCGGGTTAATTCCCGAAGGCAATTGTGTGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCATT 1 ATCCGGGTTAATTCCAGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCATT * 52898214 TGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAG 66 TGCGCGAATTACCA-AATCCGGGCTAAT-TCCCGAAG 52898249 ACAATCGAGC Statistics Matches: 87, Mismatches: 11, Indels: 4 0.85 0.11 0.04 Matches are distributed among these distances: 119 2 0.02 120 83 0.95 121 2 0.02 ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27 Consensus pattern (120 bp): ATCCGGGTTAATTCCAGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCATT TGCGCGAATTACCAAATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACCAA Found at i:52898273 original size:120 final size:120 Alignment explanation
Indices: 52898027--52898288 Score: 291 Period size: 120 Copynumber: 2.2 Consensus size: 120 52898017 TATTCGAATG * * * * 52898027 ATATCCGGGTTAATTCCAGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATTCCCGAAGGCA 1 ATATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCA * * * * * * * * * * 52898092 TTTGTGTGAGTTACCAAATCTGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACC 66 TTTGCGCGAATTACCAAATCCGGGCTAATTCCCGAAGACAATCGAGCAAGTTACC * * 52898147 AAATCCGGGTTAATTCCCGAAGGCAATTGTGTGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCA 1 ATATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCA * * 52898212 TTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACAATCGAGCAAG-TAGCT 66 TTTGCGCGAATTACCA-AATCCGGGCTAAT-TCCCGAAGACAATCGAGCAAGTTA-CC 52898267 ATATCC-GGTTAAATT-CCGAAGG 1 ATATCCGGGTT-AATTCCCGAAGG 52898289 TACGTGATTC Statistics Matches: 119, Mismatches: 19, Indels: 9 0.81 0.13 0.06 Matches are distributed among these distances: 119 15 0.13 120 102 0.86 121 2 0.02 ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27 Consensus pattern (120 bp): ATATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCAAAGGCA TTTGCGCGAATTACCAAATCCGGGCTAATTCCCGAAGACAATCGAGCAAGTTACC Found at i:52900657 original size:27 final size:27 Alignment explanation
Indices: 52900622--52900673 Score: 95 Period size: 27 Copynumber: 1.9 Consensus size: 27 52900612 TTATATTAAT 52900622 ACATAATTTTAATGTGTCTAGTTTATG 1 ACATAATTTTAATGTGTCTAGTTTATG * 52900649 ACATCATTTTAATGTGTCTAGTTTA 1 ACATAATTTTAATGTGTCTAGTTTA 52900674 GGGACAAATT Statistics Matches: 24, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 27 24 1.00 ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48 Consensus pattern (27 bp): ACATAATTTTAATGTGTCTAGTTTATG Found at i:52900684 original size:27 final size:27 Alignment explanation
Indices: 52900622--52900684 Score: 92 Period size: 27 Copynumber: 2.3 Consensus size: 27 52900612 TTATATTAAT * 52900622 ACATAATTTTAATGTGTCTAGTTTATG 1 ACATAATTTTAATGTGTCTAGTTTAGG * 52900649 ACATCATTTTAATGTGTCTAGTTTAGGG 1 ACATAATTTTAATGTGTCTAGTTTA-GG 52900677 ACA-AATTT 1 ACATAATTT 52900685 ATTACCTGCT Statistics Matches: 32, Mismatches: 3, Indels: 2 0.86 0.08 0.05 Matches are distributed among these distances: 27 28 0.88 28 4 0.12 ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44 Consensus pattern (27 bp): ACATAATTTTAATGTGTCTAGTTTAGG Found at i:52906646 original size:40 final size:40 Alignment explanation
Indices: 52906601--52906767 Score: 176 Period size: 40 Copynumber: 4.2 Consensus size: 40 52906591 CGGAATATAA 52906601 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC * * * * * 52906641 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC ** * * 52906681 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC ** * * * * 52906721 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC 52906760 CCGGATAT 1 CCGGATAT 52906768 CATTCAATTT Statistics Matches: 105, Mismatches: 21, Indels: 3 0.81 0.16 0.02 Matches are distributed among these distances: 39 14 0.13 40 91 0.87 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26 Consensus pattern (40 bp): CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:52906751 original size:80 final size:79 Alignment explanation
Indices: 52906617--52906767 Score: 198 Period size: 80 Copynumber: 1.9 Consensus size: 79 52906607 ATAATCACGT * 52906617 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC 52906682 CGGATATAGCCACTA 65 CGGATATAGCCACTA * * ** * * 52906697 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC 52906760 CCGGATAT 64 CCGGATAT 52906768 CATTCAATTT Statistics Matches: 62, Mismatches: 7, Indels: 5 0.84 0.09 0.07 Matches are distributed among these distances: 79 17 0.27 80 45 0.73 ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26 Consensus pattern (79 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC GGATATAGCCACTA Done.