Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 177 of 770
Found at i:52920661 original size:24 final size:24
Alignment explanation
Indices: 52920369--52920659 Score: 519
Period size: 24 Copynumber: 12.1 Consensus size: 24
52920359 GCAAAGACCA
52920369 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52920393 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52920417 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52920441 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
52920465 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
52920489 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52920513 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
52920537 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
52920561 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52920585 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52920609 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
52920633 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
52920657 TAT
1 TAT
52920660 AGTCACATTC
Statistics
Matches: 261, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 261 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:52923938 original size:27 final size:26
Alignment explanation
Indices: 52923890--52923949 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
52923880 GGGAGGCTGC
*
52923890 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
52923917 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
52923943 CATATAT
1 CAGATAT
52923950 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:52924748 original size:27 final size:27
Alignment explanation
Indices: 52924718--52924898 Score: 263
Period size: 27 Copynumber: 6.7 Consensus size: 27
52924708 ACCCCGCAAA
*
52924718 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
52924745 GGTATTTCAGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
52924772 GGTATTTCGATAATTCTATCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
52924799 GGTATTTCGGTAATTCTACCCTACTGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
52924826 GGTATTTCAATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
52924853 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
52924880 GGTATTTCGGTAATTCTAC
1 GGTATTTCGGTAATTCTAC
52924899 AACTTATCCA
Statistics
Matches: 134, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:52931113 original size:18 final size:17
Alignment explanation
Indices: 52931090--52931125 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
52931080 ATGGGTCGAA
52931090 ATGGGCCTAGTGGGCCCC
1 ATGGG-CTAGTGGGCCCC
*
52931108 ATGGGCTCGTGGGCCCC
1 ATGGGCTAGTGGGCCCC
52931125 A
1 A
52931126 CACGGGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.11, C:0.33, G:0.39, T:0.17
Consensus pattern (17 bp):
ATGGGCTAGTGGGCCCC
Found at i:52931775 original size:24 final size:24
Alignment explanation
Indices: 52931743--52931794 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
52931733 CTCGTCAAAA
52931743 TGATTACCTTATTAACCATCAGTT
1 TGATTACCTTATTAACCATCAGTT
52931767 TGATTACCTTATTAACCATCAGTT
1 TGATTACCTTATTAACCATCAGTT
52931791 TGAT
1 TGAT
52931795 ATTAAATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (24 bp):
TGATTACCTTATTAACCATCAGTT
Found at i:52932205 original size:33 final size:34
Alignment explanation
Indices: 52932162--52932232 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
52932152 ACAGTGCATG
* *
52932162 CAGTAACAGTCTGGGCCTGAGCCCTATTCAGTAT
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
*
52932196 CAGT-ACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
52932229 CAGT
1 CAGT
52932233 GTAGGCCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 30 0.88
34 4 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
Found at i:52932614 original size:27 final size:27
Alignment explanation
Indices: 52932584--52932755 Score: 281
Period size: 27 Copynumber: 6.4 Consensus size: 27
52932574 GGGCATAATC
*
52932584 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
52932611 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
52932638 GTCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
52932665 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* *
52932692 GTTATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
52932719 GCCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
52932746 GTCATTTTAC
1 GTCATTTTAC
52932756 AAATCGAGGA
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:52932792 original size:81 final size:82
Alignment explanation
Indices: 52932584--52932796 Score: 204
Period size: 81 Copynumber: 2.6 Consensus size: 82
52932574 GGGCATAATC
* ** * * ** * *
52932584 GTCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTA-CAGGGGCATTACGGTCATTTTAC
1 GTCATTTTACAATACAGGGAAATTACAGTTATTTTACCAAATCAGGGGTATTACGGCCATTTTAC
52932648 CCTACAAGGGTATTACG
66 CCTACAAGGGTATTACG
** ** **
52932665 GTCATTTTACCCTACAGGGGTATTACAGTTATTTTACCCTAT-AGGGGTATTACGGCCATTTTAC
1 GTCATTTTACAATACAGGGAAATTACAGTTATTTTACCAAATCAGGGGTATTACGGCCATTTTAC
*
52932729 CCTACAGGGGTATTACG
66 CCTACAAGGGTATTACG
*
52932746 GTCATTTTACAA-ATC-GAGGAAATTTCTA-TTATTTTA-CAAATCAGGGGTATT
1 GTCATTTTACAATA-CAG-GGAAATTAC-AGTTATTTTACCAAATCAGGGGTATT
52932797 TCGGTAATTT
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
80 5 0.04
81 108 0.95
82 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (82 bp):
GTCATTTTACAATACAGGGAAATTACAGTTATTTTACCAAATCAGGGGTATTACGGCCATTTTAC
CCTACAAGGGTATTACG
Found at i:52932797 original size:27 final size:27
Alignment explanation
Indices: 52932733--52932898 Score: 183
Period size: 27 Copynumber: 6.2 Consensus size: 27
52932723 TTTTACCCTA
* *
52932733 CAGGGGTATTACGGTCATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
** ** *
52932760 C-GAGGAAATTTCTATTATTTTACAAAT
1 CAG-GGGTATTTCGGTAATTTTACAAAT
*
52932787 CAGGGGTATTTCGGTAATTTCACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* * * *
52932814 TAAGGGTATTTTGGTAATTTTAC-AAC
1 CAGGGGTATTTCGGTAATTTTACAAAT
*
52932840 CTGGGGTATTTCGGTAATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
*
52932867 CAGGGGTATTTCGATAATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
52932894 CAGGG
1 CAGGG
52932899 TCTTAATGAC
Statistics
Matches: 112, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
26 22 0.20
27 89 0.79
28 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTACAAAT
Found at i:52932856 original size:53 final size:53
Alignment explanation
Indices: 52932735--52932891 Score: 170
Period size: 53 Copynumber: 2.9 Consensus size: 53
52932725 TTACCCTACA
* * * * ** * * * *
52932735 GGGGTATTACGGTCATTTTACAAATCGAGGAAATTTCTATTATTTTACAAATCA
1 GGGGTATTTCGGTAATTTCACAAATCAAGGGTATTTCGATAATTTTAC-AACCT
* * *
52932789 GGGGTATTTCGGTAATTTCACAAATTAAGGGTATTTTGGTAATTTTACAACCT
1 GGGGTATTTCGGTAATTTCACAAATCAAGGGTATTTCGATAATTTTACAACCT
* *
52932842 GGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTCGATAATTTTACAA
1 GGGGTATTTCGGTAATTTCACAAATCAAGGGTATTTCGATAATTTTACAA
52932892 ATCAGGGTCT
Statistics
Matches: 85, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
53 48 0.56
54 37 0.44
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (53 bp):
GGGGTATTTCGGTAATTTCACAAATCAAGGGTATTTCGATAATTTTACAACCT
Found at i:52933125 original size:17 final size:18
Alignment explanation
Indices: 52933103--52933138 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
52933093 TTTATCCGTG
52933103 TGGGCCCAC-GAGCCCAT
1 TGGGCCCACAGAGCCCAT
*
52933120 TGGGCCCACATAGCCCAT
1 TGGGCCCACAGAGCCCAT
52933138 T
1 T
52933139 TCGGCCCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.39, G:0.25, T:0.17
Consensus pattern (18 bp):
TGGGCCCACAGAGCCCAT
Found at i:52942731 original size:21 final size:21
Alignment explanation
Indices: 52942694--52942733 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
52942684 GCGTAAAGTG
*
52942694 TAAAAGTTGTCTATTGTTTAT
1 TAAAAGTTCTCTATTGTTTAT
52942715 TAAAAG-TCTCTATTTGTTT
1 TAAAAGTTCTCTA-TTGTTT
52942734 TGGCTCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.53
Consensus pattern (21 bp):
TAAAAGTTCTCTATTGTTTAT
Found at i:52947718 original size:30 final size:30
Alignment explanation
Indices: 52947682--52947741 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
52947672 TTCCTGAGCC
52947682 TAGGGGCAA-AAGTGTAATTATGCAAAAGTT
1 TAGGGGCAATAA-TGTAATTATGCAAAAGTT
* *
52947712 TAGGGGCAATAATGTAATTTTGCCAAAGTT
1 TAGGGGCAATAATGTAATTATGCAAAAGTT
52947742 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAATAATGTAATTATGCAAAAGTT
Found at i:52953197 original size:27 final size:28
Alignment explanation
Indices: 52953167--52953236 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
52953157 ATAGTGAATC
*
52953167 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
52953194 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
52953222 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
52953237 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:52953313 original size:42 final size:42
Alignment explanation
Indices: 52953244--52953350 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
52953234 GCTGTACAAT
* * *
52953244 TTTAAACCCTCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
52953286 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
52953328 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
52953351 GAGACCAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:52961162 original size:27 final size:28
Alignment explanation
Indices: 52961132--52961201 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
52961122 ATAGTGAATC
*
52961132 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
52961159 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
52961187 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
52961202 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:52961278 original size:42 final size:42
Alignment explanation
Indices: 52961209--52961315 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
52961199 GCTGTACAAT
* * *
52961209 TTTAAACCCTCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
52961251 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
52961293 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
52961316 GAGACCAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:52964001 original size:27 final size:28
Alignment explanation
Indices: 52963944--52964013 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
52963934 AAACTTGTAC
*
52963944 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
52963972 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
52963999 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
52964014 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:52964024 original size:27 final size:27
Alignment explanation
Indices: 52963944--52964025 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
52963934 AAACTTGTAC
* * *
52963944 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
52963972 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
52963999 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
52964026 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:52971194 original size:40 final size:39
Alignment explanation
Indices: 52971150--52971342 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
52971140 GTTCAAAACA
* * ** * *
52971150 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
52971190 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
52971230 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
52971269 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
52971308 CCTTCGGGCTTAGCCCAGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
52971343 TTCATTCACA
Statistics
Matches: 138, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 98 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:52971261 original size:39 final size:39
Alignment explanation
Indices: 52971180--52971342 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
52971170 TATGGTAACC
* *
52971180 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
52971220 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
52971259 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
52971298 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
52971337 CGCACA
1 CGCACA
52971343 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 98 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:52975386 original size:24 final size:24
Alignment explanation
Indices: 52975094--52975384 Score: 528
Period size: 24 Copynumber: 12.1 Consensus size: 24
52975084 GCAAAGACCA
52975094 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52975118 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52975142 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52975166 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52975190 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
52975214 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52975238 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
52975262 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
52975286 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52975310 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52975334 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
52975358 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
52975382 TAT
1 TAT
52975385 AGTCACATTC
Statistics
Matches: 261, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 261 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:52983441 original size:24 final size:24
Alignment explanation
Indices: 52983149--52983439 Score: 528
Period size: 24 Copynumber: 12.1 Consensus size: 24
52983139 GCAAAGACCA
52983149 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52983173 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52983197 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52983221 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52983245 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
52983269 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52983293 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
52983317 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
52983341 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
52983365 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
52983389 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
52983413 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
52983437 TAT
1 TAT
52983440 AGTCACATTC
Statistics
Matches: 261, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 261 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:52990545 original size:39 final size:38
Alignment explanation
Indices: 52990462--52990623 Score: 225
Period size: 39 Copynumber: 4.1 Consensus size: 38
52990452 ATGGTAACCC
* * *
52990462 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTC
1 GCACAATTGCCTTCGGG-CTTAGCCCGGATATCAC-ACTT
*
52990502 GCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTT
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACA-CTT
*
52990541 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 GCACAATTGCCTTCGGGCTTAGCCCGGATATCACACTT
*
52990579 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 -GCACAATTGCCTTCGGGCTTAGCCCGGATATCACACTT
52990618 CGCACA
1 -GCACA
52990624 TTCATTCACA
Statistics
Matches: 114, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
38 3 0.03
39 95 0.83
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (38 bp):
GCACAATTGCCTTCGGGCTTAGCCCGGATATCACACTT
Found at i:52990594 original size:78 final size:79
Alignment explanation
Indices: 52990462--52990612 Score: 268
Period size: 78 Copynumber: 1.9 Consensus size: 79
52990452 ATGGTAACCC
52990462 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
52990527 GGATATCATAGCTT
66 GGATATCATAGCTT
* * *
52990541 GCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
52990605 GGATATCA
66 GGATATCA
52990613 CAATTCGCAC
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
78 53 0.77
79 16 0.23
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCTT
Found at i:52999223 original size:33 final size:33
Alignment explanation
Indices: 52999181--52999247 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
52999171 AGTTAATAAA
52999181 TGTGGGCTACTAGGGGCATTATAGTAATTCAGC
1 TGTGGGCTACTAGGGGCATTATAGTAATTCAGC
52999214 TGTGGGCTACTAGGGGCATTATAGTAATTCAGC
1 TGTGGGCTACTAGGGGCATTATAGTAATTCAGC
52999247 T
1 T
52999248 ATCATGGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (33 bp):
TGTGGGCTACTAGGGGCATTATAGTAATTCAGC
Found at i:53004092 original size:44 final size:42
Alignment explanation
Indices: 53004030--53004197 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
53004020 AGGATCCGAT
* *
53004030 ATTTG-TTTTCGTGCAAGACCATGTCTGGGACATTGGCATAG
1 ATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATAG
* * *
53004071 ACTTATGATTTACGTGTAAGACCATGTCTGAGACATCGGCATCG
1 A-TT-TGATTTACGTGTAAGACCATGTCTGGGACATTGGCATAG
* * *
53004115 TATTTGATTT-CGTGTAAGACCCTGTCTGGGATAGTGGCATAG
1 -ATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATAG
* * * * *
53004157 ATATTTG-GTTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 --ATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
53004198 TGTATGGACT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.29
43 37 0.36
44 33 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
ATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATAG
Found at i:53009914 original size:28 final size:28
Alignment explanation
Indices: 53009854--53009932 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
53009844 TGGCTGCCAG
* * *
53009854 AACAGATA-TTGTGACAGA--CACTAGA
1 AACAGATATTTGTGGCAGAGCCACCAAA
53009879 AACAGATATTTGTGGCAGAGCCACCAAA
1 AACAGATATTTGTGGCAGAGCCACCAAA
*
53009907 AACAGATATTTGTGGCATAGCCACCA
1 AACAGATATTTGTGGCAGAGCCACCA
53009933 GAACGCTTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
25 8 0.17
26 9 0.19
28 30 0.64
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (28 bp):
AACAGATATTTGTGGCAGAGCCACCAAA
Found at i:53010566 original size:44 final size:44
Alignment explanation
Indices: 53010499--53010587 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
53010489 AAAACAAGCT
*
53010499 ATGTACTATCTCCCCCTTGCCATATTCGGCCAACATTCCCTTAG
1 ATGTACTATCTCCCCCTTACCATATTCGGCCAACATTCCCTTAG
53010543 ATGTACTATCTCCCCCTTACCATATTCGGCCAACATTCCCTTAG
1 ATGTACTATCTCCCCCTTACCATATTCGGCCAACATTCCCTTAG
53010587 A
1 A
53010588 CCCTAGAGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.22, C:0.36, G:0.10, T:0.31
Consensus pattern (44 bp):
ATGTACTATCTCCCCCTTACCATATTCGGCCAACATTCCCTTAG
Found at i:53012009 original size:13 final size:13
Alignment explanation
Indices: 53011991--53012016 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
53011981 CTAGACATAC
53011991 AAAATAATAATAA
1 AAAATAATAATAA
53012004 AAAATAATAATAA
1 AAAATAATAATAA
53012017 CATCCAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATAATAATAA
Found at i:53017102 original size:49 final size:49
Alignment explanation
Indices: 53016975--53017326 Score: 554
Period size: 49 Copynumber: 7.3 Consensus size: 49
53016965 CCCTTCGGGA
* * * * * * *
53016975 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
53017022 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
53017069 CTTATCACATATATACACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53017118 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
53017167 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53017216 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53017263 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53017312 CTTATCACATATATA
1 CTTATCACATATATA
53017327 TATCTCATAC
Statistics
Matches: 288, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 98 0.34
48 1 0.00
49 189 0.66
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:53017179 original size:96 final size:95
Alignment explanation
Indices: 53016975--53017326 Score: 519
Period size: 96 Copynumber: 3.7 Consensus size: 95
53016965 CCCTTCGGGA
* * * * * * * *
53016975 CTTATCAC-ATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACAATATACACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
53017038 ACTTTCACATTCATCACATTGGCCATTCGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
53017069 CTTATCACATATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--
53017134 ACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
53017167 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
53017232 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
53017263 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACA-ATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
53017327 TATCTCATAC
Statistics
Matches: 240, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 8 0.03
96 137 0.57
97 3 0.01
98 92 0.38
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (95 bp):
CTTATCACAATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:53017249 original size:145 final size:146
Alignment explanation
Indices: 53016975--53017328 Score: 565
Period size: 145 Copynumber: 2.5 Consensus size: 146
53016965 CCCTTCGGGA
* * * * * * * *
53016975 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
53017036 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACACCTTCACATTCAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACACCTTCACATTCAT
53017101 CACATCGGCCATTAGGC
130 CACATCGGCCATTAGGC
53017118 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
53017183 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACACTTTCACATTCATC
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACCTTCACATTCATC
53017247 ACATCGGCCATTAGGC
131 ACATCGGCCATTAGGC
53017263 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
53017328 A
66 A
53017329 TCTCATACAT
Statistics
Matches: 196, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
143 10 0.05
144 1 0.01
145 134 0.68
147 51 0.26
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (146 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACCTTCACATTCATC
ACATCGGCCATTAGGC
Found at i:53020269 original size:40 final size:40
Alignment explanation
Indices: 53020220--53020371 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
53020210 CCAGCATGAT
* * *
53020220 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
53020260 TGCTCTTCGGAACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
53020300 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
53020340 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
53020372 CTCAATTCTC
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:53022621 original size:49 final size:49
Alignment explanation
Indices: 53022494--53022845 Score: 554
Period size: 49 Copynumber: 7.3 Consensus size: 49
53022484 CCCTTCGGGA
* * * * * * *
53022494 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
53022541 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
53022588 CTTATCACATATATACACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53022637 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
53022686 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53022735 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53022782 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
53022831 CTTATCACATATATA
1 CTTATCACATATATA
53022846 TATCTCATAC
Statistics
Matches: 288, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 98 0.34
48 1 0.00
49 189 0.66
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:53022698 original size:96 final size:95
Alignment explanation
Indices: 53022494--53022845 Score: 519
Period size: 96 Copynumber: 3.7 Consensus size: 95
53022484 CCCTTCGGGA
* * * * * * * *
53022494 CTTATCAC-ATTTATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACAATATACACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
53022557 ACTTTCACATTCATCACATTGGCCATTCGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
53022588 CTTATCACATATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--
53022653 ACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
53022686 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
53022751 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
53022782 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACA-ATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
53022846 TATCTCATAC
Statistics
Matches: 240, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 8 0.03
96 137 0.57
97 3 0.01
98 92 0.38
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (95 bp):
CTTATCACAATATACACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:53022768 original size:145 final size:146
Alignment explanation
Indices: 53022494--53022847 Score: 565
Period size: 145 Copynumber: 2.5 Consensus size: 146
53022484 CCCTTCGGGA
* * * * * * * *
53022494 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
53022555 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACACCTTCACATTCAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACACCTTCACATTCAT
53022620 CACATCGGCCATTAGGC
130 CACATCGGCCATTAGGC
53022637 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
53022702 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACACTTTCACATTCATC
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACCTTCACATTCATC
53022766 ACATCGGCCATTAGGC
131 ACATCGGCCATTAGGC
53022782 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
53022847 A
66 A
53022848 TCTCATACAT
Statistics
Matches: 196, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
143 10 0.05
144 1 0.01
145 134 0.68
147 51 0.26
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (146 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACCTTCACATTCATC
ACATCGGCCATTAGGC
Found at i:53025566 original size:25 final size:25
Alignment explanation
Indices: 53025537--53025584 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
53025527 TTATAATATG
* * *
53025537 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
53025562 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
53025585 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:53025652 original size:19 final size:19
Alignment explanation
Indices: 53025628--53025689 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
53025618 TAAATATGGT
*
53025628 ATGTATGAGATGCACATGA
1 ATGTATGATATGCACATGA
53025647 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
53025666 TATGTATGATATGCACATG-
1 -ATGTATGATATGCACATGA
53025685 ATGTA
1 ATGTA
53025690 ATCATAAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
18 5 0.12
19 18 0.44
20 18 0.44
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:53025672 original size:20 final size:20
Alignment explanation
Indices: 53025627--53025686 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
53025617 ATAAATATGG
*
53025627 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
53025647 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
53025666 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
53025686 T
1 T
53025687 GTAATCATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 18 0.47
20 20 0.53
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:53025763 original size:24 final size:24
Alignment explanation
Indices: 53025736--53025878 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
53025726 GAGGAAGTGA
53025736 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
53025760 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
53025784 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
53025807 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
53025831 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
53025855 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
53025879 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:53025829 original size:47 final size:47
Alignment explanation
Indices: 53025736--53025878 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
53025726 GAGGAAGTGA
53025736 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
53025784 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
53025831 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
53025879 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:53025852 original size:71 final size:72
Alignment explanation
Indices: 53025736--53025879 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
53025726 GAGGAAGTGA
*
53025736 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
53025799 CCAGTTAT
65 CCAGTTAT
** * *
53025807 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
53025872 CAGTTAT
66 CAGTTAT
53025879 A
1 A
53025880 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:53026127 original size:30 final size:31
Alignment explanation
Indices: 53026067--53026129 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
53026057 CGTTTACAGT
53026067 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
53026098 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
53026128 AA
1 AA
53026130 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:53032291 original size:25 final size:25
Alignment explanation
Indices: 53032262--53032309 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
53032252 TTATAATATG
* * *
53032262 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
53032287 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
53032310 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:53032412 original size:20 final size:20
Alignment explanation
Indices: 53032352--53032412 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
53032342 ATAAATATGG
*
53032352 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
53032372 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
53032392 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
53032412 T
1 T
53032413 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:53032489 original size:24 final size:24
Alignment explanation
Indices: 53032462--53032604 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
53032452 GAGGAAGTGA
53032462 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
53032486 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
53032510 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
53032533 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
53032557 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
53032581 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
53032605 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:53032555 original size:47 final size:47
Alignment explanation
Indices: 53032462--53032604 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
53032452 GAGGAAGTGA
53032462 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
53032510 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
53032557 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
53032605 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:53032578 original size:71 final size:72
Alignment explanation
Indices: 53032462--53032605 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
53032452 GAGGAAGTGA
*
53032462 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
53032525 CCAGTTAT
65 CCAGTTAT
** * *
53032533 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
53032598 CAGTTAT
66 CAGTTAT
53032605 A
1 A
53032606 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:53032831 original size:31 final size:31
Alignment explanation
Indices: 53032796--53032859 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
53032786 CGTTTACAGT
53032796 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
53032827 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
53032858 AA
1 AA
53032860 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:53036112 original size:8 final size:8
Alignment explanation
Indices: 53036098--53036138 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
53036088 TCACAAGATG
53036098 TCGGCTTT
1 TCGGCTTT
*
53036106 TCAGCTTT
1 TCGGCTTT
* *
53036114 TCGACATT
1 TCGGCTTT
53036122 TCGGCTTT
1 TCGGCTTT
53036130 TCGGCTTT
1 TCGGCTTT
53036138 T
1 T
53036139 GCCGATCGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.07, C:0.24, G:0.20, T:0.49
Consensus pattern (8 bp):
TCGGCTTT
Found at i:53040194 original size:68 final size:64
Alignment explanation
Indices: 53040075--53040234 Score: 162
Period size: 68 Copynumber: 2.4 Consensus size: 64
53040065 GATTAGATGA
* * * * *
53040075 TACAG-ATAGTATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTACAAGAGAG
1 TACAGCATA-TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAG-ACAAGAGAG
53040138 C
64 C
* * *
53040139 TACAAGACATTATTATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAG
1 TAC-AG-CA-TA-TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAGACAAGAG
53040204 AGC
62 AGC
* *
53040207 TACAGGATATATGTAGCTAGGTCGCATG
1 TACAGCATATATGTAGCTAGGTCACATG
53040235 CGTGGTTCCA
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
64 21 0.26
65 4 0.05
66 1 0.01
67 3 0.04
68 50 0.62
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (64 bp):
TACAGCATATATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAGACAAGAGAGC
Found at i:53043421 original size:79 final size:81
Alignment explanation
Indices: 53043312--53043494 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
53043302 TACTCGTTCA
* *
53043312 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
53043375 ATTTAGT-AACTCGCACC
65 ATATAGTCAACTAGCA-C
**
53043392 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
53043455 TATGGTCAATTAGCAC
66 TATAGTCAACTAGCAC
*
53043471 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
53043495 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 30 0.33
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCAACTAGCAC
Found at i:53043494 original size:40 final size:40
Alignment explanation
Indices: 53043291--53043494 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
53043281 CGGAATTTAA
** *
53043291 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
53043331 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
53043371 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
53043410 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
53043450 CCGGATATGGTCAATTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AACTCGCACAAATGCCTTCGGGACTTAGC
53043490 CCGGA
1 CCGGA
53043495 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 92 0.65
41 14 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:53049977 original size:37 final size:37
Alignment explanation
Indices: 53049927--53049997 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
53049917 CGAAGTCTTA
53049927 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
*
53049964 CCCGGACATAATCTCCACACGTAGTCATTGGGTC
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
53049998 TCACCCGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.23
Consensus pattern (37 bp):
CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
Found at i:53050005 original size:37 final size:36
Alignment explanation
Indices: 53049925--53050011 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
53049915 TACGAAGTCT
53049925 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
* *
53049961 GTGCCCGGACATAATCTCCACACGTAGTCATTGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
53049998 TCACCCGGAACATA
1 T-ACCCGG-ACATA
53050012 TTTCCAAGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.02
37 39 0.87
38 5 0.11
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:53050152 original size:49 final size:49
Alignment explanation
Indices: 53050080--53050294 Score: 378
Period size: 49 Copynumber: 4.4 Consensus size: 49
53050070 TTTACCACAT
*
53050080 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
53050129 ATATATATACATTTTCACATTCATCACATTGGCCATGAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
53050178 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
53050227 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
53050276 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
53050295 AATTTTGATA
Statistics
Matches: 157, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
49 156 0.99
50 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:53053845 original size:29 final size:28
Alignment explanation
Indices: 53053813--53053915 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
53053803 GTGACGAGAT
* *
53053813 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
53053842 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
53053871 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
53053900 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
53053916 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:53058015 original size:28 final size:27
Alignment explanation
Indices: 53057960--53058076 Score: 164
Period size: 28 Copynumber: 4.3 Consensus size: 27
53057950 AGCATGGCTG
* *
53057960 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
53057986 CCAGATACAGATATTTGTGGCAGTGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
53058014 CCAGAATCAGATATTTGTGGCAGAGCCA
1 CCAGAA-CAGATATTTGTGGCAGAGCCA
*
53058042 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
53058070 CCAGAAC
1 CCAGAAC
53058077 GCTTCCTCCA
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
26 5 0.06
27 11 0.13
28 64 0.78
29 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:53063269 original size:43 final size:41
Alignment explanation
Indices: 53063190--53063303 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 41
53063180 GTTAAGATTA
* *
53063190 CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGACTT
1 CGTGTAAGACCATAGCTAGGATATGGCATCGATATGAGA-TC
* *
53063232 CGTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATC
1 CGTGTAAGACCATAGCTAGGATA-TGGCATCGATATGAGATC
* *
53063274 CTATGTAAGACCATATCTAGGATATGGCAT
1 C-GTGTAAGACCATAGCTAGGATATGGCAT
53063304 TTGTATGGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (41 bp):
CGTGTAAGACCATAGCTAGGATATGGCATCGATATGAGATC
Found at i:53063418 original size:20 final size:20
Alignment explanation
Indices: 53063386--53063432 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
53063376 CGACAATGTT
*
53063386 TAAGTTATGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
53063406 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
53063426 TAAGTTG
1 TAAGTTG
53063433 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:53074443 original size:25 final size:25
Alignment explanation
Indices: 53074428--53074493 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
53074418 TGTGAAATGG
*
53074428 TATGCTCAGACAAGCTATGAATCGA
1 TATGCTCACACAAGCTATGAATCGA
* *
53074453 TATGCTCACATAAGCTATGAATCGT
1 TATGCTCACACAAGCTATGAATCGA
53074478 TATGCTCACACAAGCT
1 TATGCTCACACAAGCT
53074494 GTTAAAATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
TATGCTCACACAAGCTATGAATCGA
Found at i:53078557 original size:73 final size:71
Alignment explanation
Indices: 53078440--53078605 Score: 314
Period size: 73 Copynumber: 2.3 Consensus size: 71
53078430 CGATTTGTCT
53078440 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
53078505 CTTTCA
66 CTTTCA
53078511 CGTAGCTCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTT
1 CGTAG--CTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTT
53078576 ATCTTTCA
64 ATCTTTCA
53078584 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
53078606 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
71 22 0.24
73 71 0.76
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:53082034 original size:40 final size:40
Alignment explanation
Indices: 53081985--53082189 Score: 209
Period size: 40 Copynumber: 5.1 Consensus size: 40
53081975 CGAAATTTAA
** * *
53081985 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* *
53082025 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * *
53082065 CCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * **
53082105 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * * *
53082145 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAAC
53082185 CCGGA
1 CCGGA
53082190 CATCATTCGA
Statistics
Matches: 145, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 4 0.03
40 130 0.90
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:53082108 original size:80 final size:80
Alignment explanation
Indices: 53082006--53082189 Score: 239
Period size: 80 Copynumber: 2.3 Consensus size: 80
53081996 TACTCGTTCA
* *
53082006 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
53082069 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* **
53082086 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
53082151 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
53082166 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
53082190 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 3 0.03
80 82 0.90
81 6 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:53084876 original size:25 final size:25
Alignment explanation
Indices: 53084848--53084909 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
53084838 CAGCTCGTAT
*
53084848 GAGCTTACCGTTATTGAACTCGAAG
1 GAGCTTACCGTTATTCAACTCGAAG
*
53084873 GAGCTTACCGTTATTCATCTCGAAG
1 GAGCTTACCGTTATTCAACTCGAAG
*
53084898 GAGCTTATCGTT
1 GAGCTTACCGTT
53084910 TACAGCTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAACTCGAAG
Found at i:53090223 original size:39 final size:39
Alignment explanation
Indices: 53090177--53090316 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
53090167 GGACTAAGAT
* ** *
53090177 CCGAAGGCGTTCGTATGAGTTAATAAATCTGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
*
53090216 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * *
53090255 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
53090295 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
53090317 CTATAACCGG
Statistics
Matches: 92, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 70 0.76
40 22 0.24
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:53090300 original size:79 final size:79
Alignment explanation
Indices: 53090193--53090347 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
53090183 GCGTTCGTAT
* * *
53090193 GAGTTAATAAATCTGGGTTAAGCCCGAAGGCATTTGTGCGAGTTAATA-AATCC-GGGTTAAG-C
1 GAGTTAATAAACCCGGGTTAAGCCCGAAGGCATTCGTGCGAGTTAATATAA-CCGGGGTT-AGTC
53090255 CCGAAGGCATTTGTGC
64 CCGAAGGCATTTGTGC
* * *
53090271 GAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTTTGTCC
1 GAGTTAATAAACCCGGGTTAAG-CCCGAAGGCATTCGTGCGAGTTAATATAACCGGGGTTAGTCC
53090336 CGAAGGCATTTG
65 CGAAGGCATTTG
53090348 AGCTAGTCGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 19 0.28
79 27 0.40
80 21 0.31
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (79 bp):
GAGTTAATAAACCCGGGTTAAGCCCGAAGGCATTCGTGCGAGTTAATATAACCGGGGTTAGTCCC
GAAGGCATTTGTGC
Found at i:53090311 original size:40 final size:39
Alignment explanation
Indices: 53090177--53090345 Score: 196
Period size: 39 Copynumber: 4.3 Consensus size: 39
53090167 GGACTAAGAT
* ** * *
53090177 CCGAAGGCGTTCGTATGAGTTAATAAATCTGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
53090216 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
53090255 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAG-C
* * *
53090295 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGTTAAG-C
53090335 CCGAAGGCATT
1 CCGAAGGCATT
53090346 TGAGCTAGTC
Statistics
Matches: 118, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 70 0.59
40 39 0.33
41 9 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
Found at i:53092855 original size:46 final size:44
Alignment explanation
Indices: 53092788--53093077 Score: 244
Period size: 46 Copynumber: 6.6 Consensus size: 44
53092778 TGTGTGCTAC
*
53092788 TGTAAGACATGTCTGGGACATGCATCGACCACATT-ATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATC-A--ACATTGACGAGAGCCAG
* * *
53092834 TGTAAGACATGTTTGGGACATGCATCAGCATTGAGACGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAACATT--GACGAGAGCCAG
*
53092880 TGTAAGACATGTCTGGGACATGCATCGACCACATT-ATGAGAGCCA-
1 TGTAAGACATGTCTGGGACATGCATC-A--ACATTGACGAGAGCCAG
* * *
53092925 TGTAAGACATGTTTGGGACATGCATCAGCATTGAGACGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAACATT--GACGAGAGCCAG
**
53092971 TGTAAGACATGTCTGGGACATGCAT---C----A--AGAGCTGG
1 TGTAAGACATGTCTGGGACATGCATCAACATTGACGAGAGCCAG
* * * * *
53093006 TGTAAGACATGTCTGAGACATGCACCAGCATTGAGACTAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAACATT--GACGAGAGCCAG
*
53093052 TGCAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
53093078 GACCTTGAGA
Statistics
Matches: 203, Mismatches: 20, Indels: 42
0.77 0.08 0.16
Matches are distributed among these distances:
35 30 0.15
37 1 0.00
38 1 0.00
42 4 0.02
43 5 0.02
44 2 0.01
45 34 0.17
46 121 0.60
47 1 0.00
49 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCAACATTGACGAGAGCCAG
Found at i:53092969 original size:91 final size:91
Alignment explanation
Indices: 53092783--53093081 Score: 438
Period size: 91 Copynumber: 3.4 Consensus size: 91
53092773 ACATATGTGT
*
53092783 GCTACTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACATGTTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCA-TGTAAGACATGTTT
53092848 GGGACATGCATCAGCATTGAGACGAGA
65 GGGACATGCATCAGCATTGAGACGAGA
53092875 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCATGTAAGACATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCATGTAAGACATGTTTG
53092940 GGACATGCATCAGCATTGAGACGAGA
66 GGACATGCATCAGCATTGAGACGAGA
* ** *
53092966 GCTAGTGTAAGACATGTCTGGGACATGCATC-A--AGA-GCT--G-G---TGTAAGACATGTCTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCATGTAAGACATGTTTG
* * *
53093021 AGACATGCACCAGCATTGAGACTAGA
66 GGACATGCATCAGCATTGAGACGAGA
*
53093047 GCTAGTGCAAGACATGTCTGGGACATGCATCGACC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACC
53093082 TTGAGATATA
Statistics
Matches: 195, Mismatches: 9, Indels: 14
0.89 0.04 0.06
Matches are distributed among these distances:
81 67 0.34
82 1 0.01
84 1 0.01
85 1 0.01
87 1 0.01
88 2 0.01
90 1 0.01
91 72 0.37
92 49 0.25
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCATGTAAGACATGTTTG
GGACATGCATCAGCATTGAGACGAGA
Found at i:53093002 original size:35 final size:35
Alignment explanation
Indices: 53092963--53093029 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
53092953 CATTGAGACG
*
53092963 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCA
1 AGAGCTAGTGTAAGACATGTCTGAGACATGCATCA
*
53092998 AGAGCTGGTGTAAGACATGTCTGAGACATGCA
1 AGAGCTAGTGTAAGACATGTCTGAGACATGCA
53093030 CCAGCATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.22
Consensus pattern (35 bp):
AGAGCTAGTGTAAGACATGTCTGAGACATGCATCA
Found at i:53093035 original size:81 final size:81
Alignment explanation
Indices: 53092925--53093077 Score: 261
Period size: 81 Copynumber: 1.9 Consensus size: 81
53092915 ATGAGAGCCA
* * * *
53092925 TGTAAGACATGTTTGGGACATGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGAC
1 TGTAAGACATGTCTGAGACATGCACCAGCATTGAGACGAGAGCTAGTGCAAGACATGTCTGGGAC
53092990 ATGCATCAAGAGCTGG
66 ATGCATCAAGAGCTGG
*
53093006 TGTAAGACATGTCTGAGACATGCACCAGCATTGAGACTAGAGCTAGTGCAAGACATGTCTGGGAC
1 TGTAAGACATGTCTGAGACATGCACCAGCATTGAGACGAGAGCTAGTGCAAGACATGTCTGGGAC
53093071 ATGCATC
66 ATGCATC
53093078 GACCTTGAGA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (81 bp):
TGTAAGACATGTCTGAGACATGCACCAGCATTGAGACGAGAGCTAGTGCAAGACATGTCTGGGAC
ATGCATCAAGAGCTGG
Found at i:53093086 original size:46 final size:47
Alignment explanation
Indices: 53092998--53093121 Score: 144
Period size: 46 Copynumber: 2.6 Consensus size: 47
53092988 ACATGCATCA
* * *
53092998 AGAGCTGGTGTAAGACATGTCTGAGACATGCACCAGCATTGAGA-CT
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCACCAGCATTGAGATAT
* * *
53093044 AGAGCTAGTGCAAGACATGTCTGGGACATGCATC-GACCTTGAGATAT
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCACCAG-CATTGAGATAT
* *
53093091 ACAAGCTAGTGTAAGACCTGTCTGGGACATG
1 A-GAGCTAGTGTAAGACATGTCTGGGACATG
53093122 GCGTCAGCTT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.02
46 37 0.56
47 2 0.03
48 26 0.39
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGAGCTAGTGTAAGACATGTCTGGGACATGCACCAGCATTGAGATAT
Found at i:53097450 original size:27 final size:27
Alignment explanation
Indices: 53097402--53097560 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
53097392 GCGGGGCTAC
* * *
53097402 CAGATATTGTGACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
53097429 CAGATATTGTGGCAGAGCCACCA-AAA
1 CAGATATTGTGGCAGAGCCACCAGATA
53097455 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
53097482 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
53097509 CAGATATATGTGGCGGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
53097536 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
53097561 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 11 0.10
27 97 0.86
28 5 0.04
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:53097560 original size:54 final size:54
Alignment explanation
Indices: 53097402--53097563 Score: 247
Period size: 54 Copynumber: 3.0 Consensus size: 54
53097392 GCGGGGCTAC
* * * **
53097402 CAGATAT-TGTGACGGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAAAA
1 CAGATATATGTGGCGGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
*
53097455 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCGGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
53097509 CAGATATATGTGGCGGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCGGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
53097563 C
1 C
53097564 GCTTCCTCCA
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCGGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:53099184 original size:26 final size:26
Alignment explanation
Indices: 53099153--53099257 Score: 176
Period size: 26 Copynumber: 4.1 Consensus size: 26
53099143 TGAAATGCCC
53099153 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
53099179 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
53099205 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
53099231 ATCATGGAACATTTACCT-AACCATT
1 ATCATGGAACATTTACCTAAACCATT
53099256 AT
1 AT
53099258 TAATTTGTAC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 8 0.11
26 66 0.89
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:53100895 original size:28 final size:28
Alignment explanation
Indices: 53100830--53100930 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
53100820 ATAGTGAATC
*
53100830 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
53100859 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
53100887 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
53100917 CGCACACTTAGTGC
1 CGCACACTTAGTGC
53100931 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:53106882 original size:28 final size:28
Alignment explanation
Indices: 53106842--53106943 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
53106832 ATAATCGATT
*
53106842 TCGCACACTTAGTGCCATGTGATTTAAGC
1 TCGCACACTTAGTGCCAT-TAATTTAAGC
*
53106871 TCGCACAC-TAGTGCCATATAATTT-AGT
1 TCGCACACTTAGTGCCAT-TAATTTAAGC
*
53106898 TCGCACACTTAGTGCCATTTATTTCAAGC
1 TCGCACACTTAGTGCCATTAATTT-AAGC
*
53106927 TTGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
53106944 ATCTTGTCAC
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
27 15 0.23
28 23 0.36
29 26 0.41
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATTAATTTAAGC
Found at i:53111938 original size:28 final size:28
Alignment explanation
Indices: 53111873--53111973 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
53111863 ATAGTGAATC
*
53111873 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
53111902 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
53111930 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
53111960 CGCACACTTAGTGC
1 CGCACACTTAGTGC
53111974 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:53130454 original size:40 final size:39
Alignment explanation
Indices: 53130289--53130472 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
53130279 GAAATTGATG
* * *
53130289 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
53130329 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
53130369 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
53130409 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
53130448 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
53130473 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:53130497 original size:80 final size:81
Alignment explanation
Indices: 53130329--53130517 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
53130319 GCTGGAAATT
* * * *
53130329 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
53130394 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
53130410 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
53130473 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
53130489 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
53130518 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:53135648 original size:60 final size:61
Alignment explanation
Indices: 53135538--53135659 Score: 153
Period size: 60 Copynumber: 2.0 Consensus size: 61
53135528 CTTTTGGACT
*
53135538 TTTTTTAGAAAATTAAAATTAAATTGACAAATTTTGTAAATGTTTGGGGCTAAATTTATTGA
1 TTTTTTAG-AAATTAAAATTAAATTGACAAATTTTGTAAATGATTGGGGCTAAATTTATTGA
* *
53135600 TTTTTTAG-AATTAAAATTACAA-TGA-AAATTTTTGTAAAT-ATTGAGGGCTACATTTGTTGA
1 TTTTTTAGAAATTAAAATTA-AATTGACAAA-TTTTGTAAATGATTG-GGGCTAAATTTATTGA
53135660 AAGTTTTAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
59 6 0.11
60 38 0.70
61 2 0.04
62 8 0.15
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.43
Consensus pattern (61 bp):
TTTTTTAGAAATTAAAATTAAATTGACAAATTTTGTAAATGATTGGGGCTAAATTTATTGA
Found at i:53136610 original size:90 final size:90
Alignment explanation
Indices: 53136504--53136670 Score: 262
Period size: 90 Copynumber: 1.9 Consensus size: 90
53136494 TAACTACTAT
* * * **
53136504 GGAATCATTTTCAATTTCGATATGGGTAATATTAAGCTATACAGCAAGCATAAGATTATTTCTAT
1 GGAATCACTTTCAATTTCGATACGGGTAATATTAAGCTATAAAGCAAGCATAAGACCATTTCTAT
53136569 TTGTCCAGAATTAAACCACCACCAC
66 TTGTCCAGAATTAAACCACCACCAC
* *
53136594 GGAATCACTTTCAATTTCGATACGTGTAATATTAAGTTATAAAGCAAGCATAAGACCATTTCTAT
1 GGAATCACTTTCAATTTCGATACGGGTAATATTAAGCTATAAAGCAAGCATAAGACCATTTCTAT
*
53136659 TTGTCCATAATT
66 TTGTCCAGAATT
53136671 CCATCTCAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 69 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.34
Consensus pattern (90 bp):
GGAATCACTTTCAATTTCGATACGGGTAATATTAAGCTATAAAGCAAGCATAAGACCATTTCTAT
TTGTCCAGAATTAAACCACCACCAC
Found at i:53137159 original size:18 final size:19
Alignment explanation
Indices: 53137123--53137160 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
53137113 ATTAATACTA
* *
53137123 TTAAAGTTTTTTATTAAAT
1 TTAAAGTTTATTATAAAAT
53137142 TTAAA-TTTATTATAAAAT
1 TTAAAGTTTATTATAAAAT
53137160 T
1 T
53137161 ATTTTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
TTAAAGTTTATTATAAAAT
Found at i:53146459 original size:27 final size:27
Alignment explanation
Indices: 53146422--53146522 Score: 166
Period size: 27 Copynumber: 3.7 Consensus size: 27
53146412 CGTACCTGAA
53146422 CCCTTATGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
* *
53146449 CCCTAAGGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
*
53146476 CCCTTATGTGATAAAATAACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
*
53146503 CCCTTATATGATAAAATGAC
1 CCCTTATGTGATAAAATGAC
53146523 CGAAATACCC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACGATTTTG
Found at i:53146544 original size:27 final size:27
Alignment explanation
Indices: 53146514--53146711 Score: 216
Period size: 27 Copynumber: 7.3 Consensus size: 27
53146504 CCTTATATGA
53146514 TAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
53146541 TAAAATGATCGAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
53146568 TAAAATGACCAAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * * *
53146595 TAAAATGATCGAAATACCGCTATAAGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * **
53146622 TAAAATGACTGTAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* **
53146649 TAAAATGACTGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * * ** *
53146676 TAAAATGACTGTAATACCTCGGTAAGG
1 TAAAATGACCGAAATACCCCCATAGGG
53146703 TAAAATGAC
1 TAAAATGAC
53146712 AGATTTGTTC
Statistics
Matches: 150, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCATAGGG
Found at i:53146678 original size:54 final size:54
Alignment explanation
Indices: 53146514--53146693 Score: 245
Period size: 54 Copynumber: 3.3 Consensus size: 54
53146504 CCTTATATGA
*
53146514 TAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAAGG
* *
53146568 TAAAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCGCTATAAGG
1 TAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAAGG
* * ** * *
53146622 TAAAATGACTGTAATACCCCTGTAGGGTAAAATGA-CTGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCTATAAGG
* *
53146676 TAAAATGACTGTAATACC
1 TAAAATGACCGAAATACC
53146694 TCGGTAAGGT
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 113 0.99
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (54 bp):
TAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAAGG
Found at i:53146789 original size:23 final size:23
Alignment explanation
Indices: 53146746--53146795 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
53146736 CTATATTTGA
53146746 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
53146769 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
53146792 GCAT
1 GCAT
53146796 TGCATGGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:53148728 original size:43 final size:43
Alignment explanation
Indices: 53148673--53148756 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
53148663 AAGTAAAGCT
53148673 AATAATGGAGCATTGGTGAGTCGTTCTTTTATCAAATTAAAGG
1 AATAATGGAGCATTGGTGAGTCGTTCTTTTATCAAATTAAAGG
*
53148716 AATAATGGAGCATTGGTGAGTTGTTCTTTTATCAAATTAAA
1 AATAATGGAGCATTGGTGAGTCGTTCTTTTATCAAATTAAA
53148757 TGACTTTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.37
Consensus pattern (43 bp):
AATAATGGAGCATTGGTGAGTCGTTCTTTTATCAAATTAAAGG
Found at i:53149876 original size:23 final size:23
Alignment explanation
Indices: 53149850--53149907 Score: 100
Period size: 22 Copynumber: 2.6 Consensus size: 23
53149840 TACCTTAAAC
53149850 TCCTTTTTCTTTTTATTGCTCTT
1 TCCTTTTTCTTTTTATTGCTCTT
53149873 TCCTTTTTC-TTTTATTGCTCTT
1 TCCTTTTTCTTTTTATTGCTCTT
*
53149895 TTCTTTTTCTTTT
1 TCCTTTTTCTTTT
53149908 GATTTTGTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
22 21 0.64
23 12 0.36
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.72
Consensus pattern (23 bp):
TCCTTTTTCTTTTTATTGCTCTT
Found at i:53153226 original size:20 final size:20
Alignment explanation
Indices: 53153201--53153247 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
53153191 ATTCTGATAT
53153201 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
53153221 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
53153241 ACATGAT
1 ACATGAT
53153248 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:53153331 original size:26 final size:26
Alignment explanation
Indices: 53153294--53153367 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
53153284 GAGGAAGTGT
*
53153294 AAAAAGGGCTTTTACCCTAGTTTGCC
1 AAAAAGGGCTTTTACCCTAGTTTACC
* * *
53153320 GAAAAGGGCTTTTGCCCTAGTTTATC
1 AAAAAGGGCTTTTACCCTAGTTTACC
*
53153346 AAAAAGGGCTTTTACCCCAGTT
1 AAAAAGGGCTTTTACCCTAGTT
53153368 ACTAAAAGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
AAAAAGGGCTTTTACCCTAGTTTACC
Found at i:53153614 original size:24 final size:24
Alignment explanation
Indices: 53153587--53153636 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
53153577 TTGTTACAGT
53153587 AAAGGCTTCGGCCCAGTAATATGA
1 AAAGGCTTCGGCCCAGTAATATGA
**
53153611 AAAGGCTTCGGCCCAGTGTTATGA
1 AAAGGCTTCGGCCCAGTAATATGA
53153635 AA
1 AA
53153637 TATGAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (24 bp):
AAAGGCTTCGGCCCAGTAATATGA
Found at i:53157085 original size:29 final size:29
Alignment explanation
Indices: 53157052--53157127 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
53157042 TCTCATTTAG
* *
53157052 ATGGCCCATCATGCCCAATTCACGTTCAT
1 ATGGCCCATCAGGCCCAATTCACATTCAT
53157081 ATGGCCCATCAGGCCCAATTCACATTCAT
1 ATGGCCCATCAGGCCCAATTCACATTCAT
*
53157110 ATGGCCCATTAGGCCCAA
1 ATGGCCCATCAGGCCCAA
53157128 CCTTATTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (29 bp):
ATGGCCCATCAGGCCCAATTCACATTCAT
Found at i:53157147 original size:28 final size:29
Alignment explanation
Indices: 53157052--53157147 Score: 104
Period size: 29 Copynumber: 3.3 Consensus size: 29
53157042 TCTCATTTAG
* * * *
53157052 ATGGCCCATCATGCCCAATTCACGTTCAT
1 ATGGCCCATTAGGCCCAATCCACATTCAT
* *
53157081 ATGGCCCATCAGGCCCAATTCACATTCAT
1 ATGGCCCATTAGGCCCAATCCACATTCAT
** *
53157110 ATGGCCCATTAGGCCCAA-CCTTATTTAT
1 ATGGCCCATTAGGCCCAATCCACATTCAT
53157138 ATGGCCCATT
1 ATGGCCCATT
53157148 TGACCCAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 16 0.27
29 44 0.73
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAATCCACATTCAT
Found at i:53157165 original size:28 final size:28
Alignment explanation
Indices: 53157033--53157167 Score: 103
Period size: 29 Copynumber: 4.8 Consensus size: 28
53157023 TATGACCCTC
* *
53157033 TAGG-CCAAATCTCATTTAGATGGCCCAT
1 TAGGCCCAAATCACA-TTATATGGCCCAT
* * * *
53157061 CATGCCCAATTCACGTTCATATGGCCCAT
1 TAGGCCCAAATCACATT-ATATGGCCCAT
* *
53157090 CAGGCCCAATTCACATTCATATGGCCCAT
1 TAGGCCCAAATCACATT-ATATGGCCCAT
* * *
53157119 TAGGCCCAACCTTA-TTTATATGGCCCAT
1 TAGGCCCAA-ATCACATTATATGGCCCAT
* *
53157147 TTGACCCAAATCACATTATAT
1 TAGGCCCAAATCACATTATAT
53157168 TCATGCTCAC
Statistics
Matches: 86, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
27 2 0.02
28 28 0.33
29 54 0.63
30 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (28 bp):
TAGGCCCAAATCACATTATATGGCCCAT
Found at i:53157407 original size:16 final size:16
Alignment explanation
Indices: 53157385--53157421 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
53157375 AAACTTTTGA
*
53157385 CTTTTCGGCATTTCGG
1 CTTTTCGACATTTCGG
*
53157401 GTTTTCGACATTTCGG
1 CTTTTCGACATTTCGG
53157417 CTTTT
1 CTTTT
53157422 GCCGATCTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.22, G:0.22, T:0.49
Consensus pattern (16 bp):
CTTTTCGACATTTCGG
Found at i:53160998 original size:20 final size:20
Alignment explanation
Indices: 53160973--53161012 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
53160963 GGGACTAAAT
*
53160973 CAAACACATATAAAAATTTC
1 CAAACACATAAAAAAATTTC
53160993 CAAACACATAAAAAAATTTC
1 CAAACACATAAAAAAATTTC
53161013 ATGAAATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (20 bp):
CAAACACATAAAAAAATTTC
Found at i:53170704 original size:30 final size:29
Alignment explanation
Indices: 53170631--53170713 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 29
53170621 AGCTCACGAG
*
53170631 CTAAACCTTAGCTCAACTTCAGCTTAGGA
1 CTAAACCTTAGCTCAACTTTAGCTTAGGA
* * * *
53170660 GTATAATCTCAGCTCAACTTTAGCTTAAGGC
1 CTA-AACCTTAGCTCAACTTTAGCTT-AGGA
* *
53170691 CTAAAGCTTAGCTC-ATTTTAGCT
1 CTAAACCTTAGCTCAACTTTAGCT
53170714 CAAACCCGGT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
29 10 0.23
30 28 0.65
31 5 0.12
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (29 bp):
CTAAACCTTAGCTCAACTTTAGCTTAGGA
Found at i:53172169 original size:16 final size:15
Alignment explanation
Indices: 53172150--53172196 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
53172140 TTATCATTTT
53172150 AAGTAGTTATAAAAAA
1 AAGTAG-TATAAAAAA
53172166 AAGTA-TATAAAAAA
1 AAGTAGTATAAAAAA
* *
53172180 AATTAGAAATAAAAAA
1 AAGTAG-TATAAAAAA
53172196 A
1 A
53172197 TTTCGAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 13 0.48
16 14 0.52
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAGTAGTATAAAAAA
Found at i:53172204 original size:16 final size:16
Alignment explanation
Indices: 53172172--53172211 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
53172162 AAAAAAGTAT
53172172 ATAAAAAAAATTAGAA
1 ATAAAAAAAATTAGAA
* *
53172188 ATAAAAAAATTTCGAA
1 ATAAAAAAAATTAGAA
53172204 ATAAAAAA
1 ATAAAAAA
53172212 GGTGTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (16 bp):
ATAAAAAAAATTAGAA
Found at i:53175358 original size:37 final size:37
Alignment explanation
Indices: 53175317--53175393 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
53175307 CAGGTATGTG
53175317 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
53175354 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATATTATTTATGTGAGATTGATCTGACGAGA
53175391 ATA
1 ATA
53175394 AAGAATGTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.40
Consensus pattern (37 bp):
ATATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:53176775 original size:15 final size:15
Alignment explanation
Indices: 53176742--53176812 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 15
53176732 ACATTCTTGT
* *
53176742 AAAGAGAAAACAGAGA
1 AAAGAAAAAAAAGA-A
53176758 AAAGAAAAGAAAAGAA
1 AAAGAAAA-AAAAGAA
* *
53176774 AAAGCAAAATAAGAA
1 AAAGAAAAAAAAGAA
*
53176789 AAAGAAAACAAAATAA
1 AAAGAAAA-AAAAGAA
*
53176805 AAACAAAA
1 AAAGAAAA
53176813 GAGAGGCAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
15 13 0.29
16 27 0.60
17 5 0.11
ACGTcount: A:0.77, C:0.06, G:0.14, T:0.03
Consensus pattern (15 bp):
AAAGAAAAAAAAGAA
Found at i:53176879 original size:12 final size:12
Alignment explanation
Indices: 53176862--53176892 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
53176852 TTGAGAGAAC
53176862 TTGAAAAAGCCT
1 TTGAAAAAGCCT
53176874 TTGAAAAAGCCT
1 TTGAAAAAGCCT
*
53176886 GTGAAAA
1 TTGAAAA
53176893 GCAAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:53176903 original size:12 final size:12
Alignment explanation
Indices: 53176895--53176919 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
53176885 TGTGAAAAGC
53176895 AAAAAGAAAATG
1 AAAAAGAAAATG
53176907 AAAAAGAAAATG
1 AAAAAGAAAATG
53176919 A
1 A
53176920 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:53176916 original size:18 final size:18
Alignment explanation
Indices: 53176889--53176944 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
53176879 AAAGCCTGTG
53176889 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
53176908 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
53176926 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
53176943 AA
1 AA
53176945 TTCGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:53176929 original size:30 final size:31
Alignment explanation
Indices: 53176895--53176969 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 31
53176885 TGTGAAAAGC
*
53176895 AAAAAGAAAATGAAAAAGAAAAT-GAGATTG
1 AAAAAGAAAATGAAAAAGAAAATCGAGAGTG
* * *
53176925 AAAAAGAGAACG-AAAAGAAATTCGAGAGTG
1 AAAAAGAAAATGAAAAAGAAAATCGAGAGTG
*
53176955 AAAAAGAAATTGAAA
1 AAAAAGAAAATGAAA
53176970 CAAAAGAAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
29 9 0.25
30 25 0.69
31 2 0.06
ACGTcount: A:0.64, C:0.03, G:0.21, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAAATCGAGAGTG
Found at i:53182264 original size:18 final size:18
Alignment explanation
Indices: 53182241--53182278 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
53182231 CTTGATCAGA
53182241 AACATAAAGAGTTTCTGG
1 AACATAAAGAGTTTCTGG
53182259 AACATAAAGAGTTTCTGG
1 AACATAAAGAGTTTCTGG
53182277 AA
1 AA
53182279 TTGAAACAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (18 bp):
AACATAAAGAGTTTCTGG
Found at i:53191249 original size:27 final size:27
Alignment explanation
Indices: 53191195--53191305 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
53191185 AGCATGGCTG
* * *
53191195 CCAGAACTGATAA-TGTGACAGTGTCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
* *
53191221 CCAAAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
53191248 CCAGAACAGAT-ATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGTGCCA
**
53191275 CCAGATTAGATAATTGTGGCAGTGCCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
53191302 CCAG
1 CCAG
53191306 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 13 0.18
27 58 0.79
28 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGTGCCA
Found at i:53191277 original size:54 final size:53
Alignment explanation
Indices: 53191195--53191305 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
53191185 AGCATGGCTG
* *
53191195 CCAGAACTGATAATGTGACAGTGTCACCAAAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGTGCCACCAAAACAGATAATTGTGGCAGAGCCA
* * ** *
53191248 CCAGAACAGATATATGTGGCAGTGCCACCAGATTAGATAATTGTGGCAGTGCCA
1 CCAGAACAGATA-ATGTGACAGTGCCACCAAAACAGATAATTGTGGCAGAGCCA
53191302 CCAG
1 CCAG
53191306 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGTGCCACCAAAACAGATAATTGTGGCAGAGCCA
Found at i:53192772 original size:24 final size:24
Alignment explanation
Indices: 53192736--53192837 Score: 159
Period size: 24 Copynumber: 4.2 Consensus size: 24
53192726 GCCAACACCG
*
53192736 TTCTCCCTAATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
* *
53192760 TTCTCCCTTATCAGCTCTTACATC
1 TTCTCCCTTATCAGCTCCTAAATC
*
53192784 CTCTCCCTTATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
*
53192808 CTCTCCCTTATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
53192832 TTCTCC
1 TTCTCC
53192838 TGACAGCCTT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.20, C:0.40, G:0.04, T:0.36
Consensus pattern (24 bp):
TTCTCCCTTATCAGCTCCTAAATC
Found at i:53199179 original size:27 final size:26
Alignment explanation
Indices: 53199125--53199191 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 26
53199115 AGCATAGCTG
*
53199125 CCAGAACAGATAATGTGACAGTGTCA
1 CCAGAACAGATAATGTGACAGTGCCA
*
53199151 CCAGAACAGATATATGTGGCAGTGCCA
1 CCAGAACAGATA-ATGTGACAGTGCCA
*
53199178 CCAGATCAGATAAT
1 CCAGAACAGATAAT
53199192 TATGGCATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 14 0.38
27 23 0.62
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGTGCCA
Found at i:53199197 original size:27 final size:27
Alignment explanation
Indices: 53199125--53199208 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 27
53199115 AGCATAGCTG
* *
53199125 CCAGAACAGATAA-TGTGACAGTGTCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
53199151 CCAGAACAGAT-ATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGTGCCA
* *
53199178 CCAGATCAGATAATTATGGCA-TAGCCA
1 CCAGAACAGATAATTGTGGCAGT-GCCA
53199205 CCAG
1 CCAG
53199209 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
25 1 0.02
26 12 0.24
27 35 0.70
28 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGTGCCA
Found at i:53200671 original size:24 final size:24
Alignment explanation
Indices: 53200635--53200736 Score: 159
Period size: 24 Copynumber: 4.2 Consensus size: 24
53200625 GCCAACACCG
*
53200635 TTCTCCCTAATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
*
53200659 TTCTCCCTTATCAGCTCCTACATC
1 TTCTCCCTTATCAGCTCCTAAATC
* *
53200683 CTCTCCCTTATCAACTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
*
53200707 ATCTCCCTTATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
53200731 TTCTCC
1 TTCTCC
53200737 TGACAGCCTT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.22, C:0.40, G:0.03, T:0.35
Consensus pattern (24 bp):
TTCTCCCTTATCAGCTCCTAAATC
Found at i:53205484 original size:38 final size:38
Alignment explanation
Indices: 53205436--53205672 Score: 384
Period size: 38 Copynumber: 6.2 Consensus size: 38
53205426 TCGAAATATG
53205436 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
53205474 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
53205512 ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
53205550 ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
53205588 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
** * * *
53205626 ATATCCGGGTTAAATCGTGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
53205664 ATATTCGGG
1 ATATCCGGG
53205673 CCTTTGAGCC
Statistics
Matches: 189, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 189 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:53205762 original size:45 final size:45
Alignment explanation
Indices: 53205666--53205793 Score: 160
Period size: 46 Copynumber: 2.9 Consensus size: 45
53205656 CTGGTATTAT
* * *
53205666 ATTCGGGCCTTT-GAGCCTAGCAGACTATTATGCCGGTGAGACATT
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA-ACATG
53205711 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAA-ATG
1 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAACATG
53205755 ATATCGGGCC--TCGAGCCTAGCAGG-TGA-AATGCCGGTGAA
1 AT-TCGGGCCTTTCGAGCCTAGCAGGCT-ATAATGCCGGTGAA
53205794 TGAATAAAAG
Statistics
Matches: 77, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
42 13 0.17
43 15 0.19
44 4 0.05
45 20 0.26
46 25 0.32
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (45 bp):
ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAACATG
Found at i:53210762 original size:27 final size:28
Alignment explanation
Indices: 53210730--53210961 Score: 309
Period size: 27 Copynumber: 8.6 Consensus size: 28
53210720 AAGTACTCCC
*
53210730 GATTTACAGAATTACCGTTTTACCCTCA
1 GATTTACAGAATTACTGTTTTACCCTCA
*
53210758 G-TTTATAGAATTACTGTTTTACCCTC-
1 GATTTACAGAATTACTGTTTTACCCTCA
** * *
53210784 GATTTGTAAAATTACCGTTTTACCCTC-
1 GATTTACAGAATTACTGTTTTACCCTCA
*
53210811 GATTTACAGAATTACCGTTTTACCCTCA
1 GATTTACAGAATTACTGTTTTACCCTCA
*
53210839 G-TTTACAGAATTACTATTTTACCCTC-
1 GATTTACAGAATTACTGTTTTACCCTCA
53210865 GATTTACAGAATTACTGTTTTACCCTCA
1 GATTTACAGAATTACTGTTTTACCCTCA
* *
53210893 G-TTTACAGAATTATTGTTTTACCCT-T
1 GATTTACAGAATTACTGTTTTACCCTCA
53210919 GATTTACAGAATTACTGTTTTACCCTC-
1 GATTTACAGAATTACTGTTTTACCCTCA
*
53210946 GATTTACAAAATTACT
1 GATTTACAGAATTACT
53210962 AAAATACCCT
Statistics
Matches: 183, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
26 3 0.02
27 177 0.97
28 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (28 bp):
GATTTACAGAATTACTGTTTTACCCTCA
Found at i:53210969 original size:27 final size:27
Alignment explanation
Indices: 53210912--53210971 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
53210902 ATTATTGTTT
* * ****
53210912 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
53210939 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
53210966 TACCCT
1 TACCCT
53210972 TGGTTTGTGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:53210971 original size:81 final size:81
Alignment explanation
Indices: 53210729--53210961 Score: 353
Period size: 81 Copynumber: 2.9 Consensus size: 81
53210719 AAAGTACTCC
* **
53210729 CGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGATTTGTAAA
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAAA
*
53210794 ATTACCGTTTTACCCT
66 ATTACTGTTTTACCCT
* *
53210810 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGA
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAAA
53210875 ATTACTGTTTTACCCT
66 ATTACTGTTTTACCCT
** *
53210891 C-AGTTTACAGAATTATTGTTTTACCCT-TGATTTACAGAATTACTGTTTTACCCTCGATTTACA
1 CGA-TTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACTGTTTTACCCTCGATTTACA
53210954 AAATTACT
64 AAATTACT
53210962 AAAATACCCT
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
80 2 0.01
81 137 0.99
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.41
Consensus pattern (81 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTACAAA
ATTACTGTTTTACCCT
Done.