Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 181 of 770
Found at i:54222365 original size:46 final size:45
Alignment explanation
Indices: 54222295--54222466 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
54222285 AACCCGCCCC
* * *
54222295 TAAGTGAACTCGGACTCAATTCAACGAGCTCAGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGTATCCA
* * *
54222341 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTA--TCCA
* * * * *
54222387 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCG
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCG-GCATTCGTATCCA
54222434 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
54222467 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 59 0.58
47 29 0.28
48 2 0.02
49 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGTATCCA
Found at i:54222415 original size:93 final size:93
Alignment explanation
Indices: 54222300--54222470 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
54222290 GCCCCTAAGT
* * * *
54222300 GAACTCGGACTCAATTCAACGAGCTC-AGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
54222364 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
54222393 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
54222458 CGAGTTCGGATGC
66 CGAGTTCGGATGC
54222471 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:54222486 original size:46 final size:46
Alignment explanation
Indices: 54222293--54222486 Score: 150
Period size: 46 Copynumber: 4.2 Consensus size: 46
54222283 GTAACCCGCC
* * * * **
54222293 CCTAAGTGAACTCGGACTCAATTCAACGAGCTCAGG-CGTTC-GTAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCAACAT
54222338 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * *** *
54222388 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
54222431 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
54222479 CCT-AGTGA
1 CCTAAGTGA
54222487 CATGTCATTT
Statistics
Matches: 116, Mismatches: 20, Indels: 25
0.72 0.12 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 7 0.06
46 65 0.56
47 29 0.25
48 8 0.07
49 1 0.01
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:54228848 original size:93 final size:93
Alignment explanation
Indices: 54228736--54228905 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
54228726 CCCATAAGTG
* * *
54228736 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
54228801 GAGCTCGGATGCCTAGTTACATCTCACA
66 GAGCTCGGATGCCTAGTTACATCTCACA
*
54228829 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
54228894 GAGTTCGGATGC
66 GAGCTCGGATGC
54228906 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACA
Found at i:54228902 original size:46 final size:46
Alignment explanation
Indices: 54228727--54228902 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
54228717 TGTAACCCGC
* * *
54228727 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
54228773 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
54228823 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
54228866 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
54228903 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.05
44 1 0.01
46 64 0.58
47 27 0.24
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:54231628 original size:24 final size:24
Alignment explanation
Indices: 54231596--54231680 Score: 161
Period size: 24 Copynumber: 3.5 Consensus size: 24
54231586 AATCTCAAAT
54231596 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
54231620 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
54231644 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
54231668 GCACTATGTGTGC
1 GCACTATGTGTGC
54231681 AACATAATAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:54231648 original size:48 final size:47
Alignment explanation
Indices: 54231596--54231703 Score: 171
Period size: 48 Copynumber: 2.3 Consensus size: 47
54231586 AATCTCAAAT
* ** *
54231596 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCAACATAATA-A
54231644 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCAACATAATAA
54231691 GCACTATGTGTGC
1 GCACTATGTGTGC
54231704 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
47 14 0.25
48 42 0.75
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (47 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCAACATAATAA
Found at i:54243564 original size:40 final size:40
Alignment explanation
Indices: 54243359--54243566 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
54243349 CAATTGAATG
* * *** *
54243359 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCAAGCAATG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTT
* * * **
54243399 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTT
* * *
54243439 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTT
* * *
54243479 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTT
* * *
54243519 CTATCCGGGCTAAAACCCGAAGGCATTTGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTT
54243559 ATATCCGG
1 ATATCCGG
54243567 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTT
Found at i:54248954 original size:17 final size:17
Alignment explanation
Indices: 54248928--54248967 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
54248918 GTATGAGTTA
54248928 TGTA-TGTTAAATGATG
1 TGTATTGTTAAATGATG
*
54248944 TGTATTGTTAAATGTTG
1 TGTATTGTTAAATGATG
54248961 TGTATTG
1 TGTATTG
54248968 ATTGGTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (17 bp):
TGTATTGTTAAATGATG
Found at i:54256952 original size:11 final size:11
Alignment explanation
Indices: 54256934--54256963 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
54256924 TTTCTTGCAA
54256934 TCTAATTTTAT
1 TCTAATTTTAT
*
54256945 TTTAATTTTAT
1 TCTAATTTTAT
54256956 TCTAATTT
1 TCTAATTT
54256964 ACTAATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (11 bp):
TCTAATTTTAT
Found at i:54259529 original size:46 final size:46
Alignment explanation
Indices: 54259479--54259654 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
54259469 TGGTTGAGCA
54259479 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54259525 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
54259570 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54259618 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
54259655 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:54259635 original size:93 final size:93
Alignment explanation
Indices: 54259476--54259647 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
54259466 GGATGGTTGA
* *
54259476 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
54259541 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
54259569 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
54259634 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
54259648 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:54267104 original size:46 final size:46
Alignment explanation
Indices: 54267054--54267229 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
54267044 TGGTTGAGCA
54267054 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54267100 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
54267145 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54267193 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
54267230 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:54267210 original size:93 final size:93
Alignment explanation
Indices: 54267051--54267222 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
54267041 GGATGGTTGA
* *
54267051 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
54267116 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
54267144 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
54267209 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
54267223 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:54270059 original size:41 final size:43
Alignment explanation
Indices: 54270002--54270088 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 43
54269992 GCTTAGACTA
* *
54270002 TAAATAAGTGCTTCTC-GG-GGCAACTCTAGCACTAACTGTAT
1 TAAATAAGCGCTTCTCGGGAGGCAACCCTAGCACTAACTGTAT
54270043 TAAATAAGCGCTTCTCGGGAGGCAACCCTAGCACTAACTGTAT
1 TAAATAAGCGCTTCTCGGGAGGCAACCCTAGCACTAACTGTAT
54270086 TAA
1 TAA
54270089 CTTCTTTAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 15 0.36
42 2 0.05
43 25 0.60
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (43 bp):
TAAATAAGCGCTTCTCGGGAGGCAACCCTAGCACTAACTGTAT
Found at i:54278853 original size:26 final size:27
Alignment explanation
Indices: 54278802--54278853 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
54278792 CCTAATTGAT
54278802 AAAATGACTATTATGCCCCTGCATGAAA
1 AAAATGACTATTATGCCCCT-CATGAAA
54278830 AAAATGA-TAGTTATGCCCCT-ATGA
1 AAAATGACTA-TTATGCCCCTCATGA
54278854 GATGAATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 4 0.17
27 2 0.09
28 17 0.74
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (27 bp):
AAAATGACTATTATGCCCCTCATGAAA
Found at i:54280392 original size:42 final size:42
Alignment explanation
Indices: 54280345--54280440 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
54280335 CATATGGACA
* * *
54280345 AGACACACACCCGTGTTCTAGGCCATGTAGCTCTCACGGCTG
1 AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
*
54280387 AGACACACGCCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
1 AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
*
54280429 AGACGCACACCC
1 AGACACACACCC
54280441 ATGACTCTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.24, C:0.35, G:0.23, T:0.18
Consensus pattern (42 bp):
AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
Found at i:54283024 original size:44 final size:42
Alignment explanation
Indices: 54282924--54283032 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
54282914 AGCTTGTACA
* * *
54282924 ATGCCAACGTCCCAGACGTGGTCTTATATGAAATCAAATATG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAAGATG
* * * *
54282966 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCACAGATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCAAAGAT-G
*
54283010 ATGCCAACATCCCAGACGTGGTC
1 ATGCCAACGTCCCAGACGTGGTC
54283033 GGACACAGAA
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 25 0.46
43 9 0.17
44 20 0.37
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAAGATG
Found at i:54286964 original size:30 final size:30
Alignment explanation
Indices: 54286930--54286990 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
54286920 TCCTTAACTC
54286930 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
54286960 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
54286990 A
1 A
54286991 GGCTCGTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:54288184 original size:16 final size:16
Alignment explanation
Indices: 54288163--54288199 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
54288153 GGCGATCATA
54288163 TGGGCTTAGGCCGTTT
1 TGGGCTTAGGCCGTTT
54288179 TGGGCTTAGGCCGTTT
1 TGGGCTTAGGCCGTTT
54288195 TGGGC
1 TGGGC
54288200 CATGTTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.05, C:0.19, G:0.41, T:0.35
Consensus pattern (16 bp):
TGGGCTTAGGCCGTTT
Found at i:54288518 original size:27 final size:27
Alignment explanation
Indices: 54288217--54288520 Score: 326
Period size: 27 Copynumber: 11.3 Consensus size: 27
54288207 GGCCGAAATG
*
54288217 ATGACCGAAATACCCCTATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * *
54288244 ATGACCGAAATACCCCCATAGTGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
*
54288271 ATAACTGAAATACCCCTATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* *
54288298 ATGACCGAAATATCCCC-ATAGGATAAA
1 ATGACTGAAATA-CCCCTATAGGGTAAA
*
54288325 ATGA-TCGAAATACCCCCATAGGGTAAA
1 ATGACT-GAAATACCCCTATAGGGTAAA
*
54288352 ATGACTGAAATACCCCCATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * *
54288379 ATTACCGAAATACCCCTATAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * ** *
54288406 ATGATTGTAATACCCCTGCAGGATAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* ** * *
54288433 ATGACAGTGATA-CACTTTAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* *
54288459 ATGACTGTAATACCCCTGTAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * *
54288486 ATGACTGTAATACCCCTGTAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
54288513 ATGACTGA
1 ATGACTGA
54288521 TTTGCCCTAC
Statistics
Matches: 236, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
26 24 0.10
27 207 0.88
28 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (27 bp):
ATGACTGAAATACCCCTATAGGGTAAA
Found at i:54301826 original size:48 final size:48
Alignment explanation
Indices: 54301672--54301849 Score: 173
Period size: 48 Copynumber: 3.7 Consensus size: 48
54301662 TATAGTACAA
* * * **
54301672 TGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACA-TATCTA
1 TGTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATTATCGG
* * ** *
54301720 AGTCGATGCCATGTCCTAGACAGGTCTTACACTGATTTTCATATATCGAG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT-TATCG-G
*
54301770 -GTTGATGCCATGTCCCAGACAGG-CTTACACTGGCTCTCATCTATCGG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT-TATCGG
* * *
54301817 TGTCAATGCCATGTCTCAGACAAGTCTTACACT
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACT
54301850 AACACATGTC
Statistics
Matches: 105, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
47 16 0.15
48 56 0.53
49 33 0.31
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTATCGG
Found at i:54301873 original size:22 final size:22
Alignment explanation
Indices: 54301848--54301892 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
54301838 AAGTCTTACA
54301848 CTAACACATGTCAAGCTGATGC
1 CTAACACATGTCAAGCTGATGC
*
54301870 CTAACACATGTCAAGTTGATGC
1 CTAACACATGTCAAGCTGATGC
54301892 C
1 C
54301893 ATGTCCCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (22 bp):
CTAACACATGTCAAGCTGATGC
Found at i:54306466 original size:43 final size:43
Alignment explanation
Indices: 54306413--54306524 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
54306403 TAGGATTATA
54306413 GTTATGTGATTACGTGTAAAACCAT-GTCTAGGAC-ATTGGCATC
1 GTTATGTGATTACGTGTAAAACCATAG-CTAGG-CTATTGGCATC
* * *
54306456 GTTATTTGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATC
1 GTTATGTGATTACGTGTAAAACCATAGCTAGGCTATTGGCATC
* * *
54306499 GATATGTGATAACATGTAAAACCATA
1 GTTATGTGATTACGTGTAAAACCATA
54306525 TCCAGGATAT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 56 0.97
44 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (43 bp):
GTTATGTGATTACGTGTAAAACCATAGCTAGGCTATTGGCATC
Found at i:54308918 original size:25 final size:25
Alignment explanation
Indices: 54308890--54308937 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
54308880 TTATATCATG
* *
54308890 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTGTTATACCCCTAGGTA
54308915 AAAATGACTGTTATACCCCTAGG
1 AAAATGACTGTTATACCCCTAGG
54308938 GTTTACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
AAAATGACTGTTATACCCCTAGGTA
Found at i:54308999 original size:20 final size:20
Alignment explanation
Indices: 54308973--54309019 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
54308963 ATTTTGATAT
54308973 ACATGAT-TGATATGATAAGC
1 ACATGATATG-TATGATAAGC
* *
54308993 TCATGATATGTATGATATGC
1 ACATGATATGTATGATAAGC
54309013 ACATGAT
1 ACATGAT
54309020 GTATTCATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATAAGC
Found at i:54309097 original size:25 final size:26
Alignment explanation
Indices: 54309069--54309171 Score: 97
Period size: 25 Copynumber: 4.1 Consensus size: 26
54309059 GAGGAAGTGC
*
54309069 AAAATGGCTTATGCCCCAGTTTATTAA
1 AAAAGGGCTTATGCCCCAGTTTATT-A
* * *
54309096 AAAAGGGCTGATG-CCCTGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTA
***
54309121 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTA
*
54309146 AAAAGGGCTT-TGGCCCAG-TTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTA
54309170 AA
1 AA
54309172 GAGGCTAGGC
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
24 7 0.11
25 35 0.56
26 10 0.16
27 11 0.17
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTA
Found at i:54317243 original size:20 final size:20
Alignment explanation
Indices: 54317217--54317263 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
54317207 ATTTTGATAT
54317217 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
54317237 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
54317257 ACATGAT
1 ACATGAT
54317264 GTATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:54317342 original size:25 final size:26
Alignment explanation
Indices: 54317313--54317436 Score: 171
Period size: 26 Copynumber: 4.8 Consensus size: 26
54317303 GAGGAAGAGC
* *
54317313 AAAAAGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
54317339 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
54317366 AAAAGGACTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
54317392 AAAAGGGCTT-TGCCCCAATTTACAG
1 AAAAGGGCTTATGCCCCAGTTTATTG
54317417 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
54317437 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
25 31 0.35
26 34 0.38
27 24 0.27
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:54317342 original size:26 final size:26
Alignment explanation
Indices: 54317313--54317448 Score: 156
Period size: 25 Copynumber: 5.3 Consensus size: 26
54317303 GAGGAAGAGC
*
54317313 AAAAAGGCTTATGCCCTAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTATTG
54317339 AAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAA-GGCTTATGCCCCAGTTTATTG
54317366 -AAAAGGACTTATGCCCCAGTTTATTG
1 AAAAAGG-CTTATGCCCCAGTTTATTG
* * **
54317392 AAAAGGGCTT-TGCCCCAATTTACAG
1 AAAAAGGCTTATGCCCCAGTTTATTG
*
54317417 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAAGGCTTATGCCCCAGTTTATTG
*
54317440 AAAGAGGCT
1 AAAAAGGCT
54317449 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
23 7 0.07
24 3 0.03
25 31 0.32
26 31 0.32
27 25 0.26
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
AAAAAGGCTTATGCCCCAGTTTATTG
Found at i:54317978 original size:17 final size:17
Alignment explanation
Indices: 54317956--54317991 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
54317946 AATAAGGCCA
54317956 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
54317973 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
54317990 TT
1 TT
54317992 CTTTTCTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAACTTTATTTTCT
Found at i:54322121 original size:33 final size:33
Alignment explanation
Indices: 54322079--54322144 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
54322069 AATAACCATC
54322079 TAGAAAACAATAGAAGACTTT-TCCTGGTAATCT
1 TAGAAAACAATAGAAGACTTTCT-CTGGTAATCT
54322112 TAGAAAACAATAGAAGACTTTCTCTGGTAATCT
1 TAGAAAACAATAGAAGACTTTCTCTGGTAATCT
54322145 ATCTAACATC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (33 bp):
TAGAAAACAATAGAAGACTTTCTCTGGTAATCT
Found at i:54329310 original size:34 final size:35
Alignment explanation
Indices: 54329253--54329325 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
54329243 GACTGACTTG
* * *
54329253 GACTATGAATTTGACTGATTTGACTGTGATTGTAC
1 GACTATGAATTTAACTGACTTGACAGTGATTGTAC
* *
54329288 GACTATG-ATTTAACTGACTTGACAGTGGTTGTAT
1 GACTATGAATTTAACTGACTTGACAGTGATTGTAC
54329322 GACT
1 GACT
54329326 GATATGCTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 26 0.79
35 7 0.21
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.38
Consensus pattern (35 bp):
GACTATGAATTTAACTGACTTGACAGTGATTGTAC
Found at i:54329743 original size:32 final size:32
Alignment explanation
Indices: 54329677--54329744 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
54329667 ATTACCGTCG
* *
54329677 CTGATGGCTATGTGCCAAACATAATATAGTTA
1 CTGATGGCTATGTGCCAAACATAATACAGCTA
* ** *
54329709 CTGATGGCTTTGTGCCAATTATAATACCGCTA
1 CTGATGGCTATGTGCCAAACATAATACAGCTA
54329741 CTGA
1 CTGA
54329745 AGGGTTAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (32 bp):
CTGATGGCTATGTGCCAAACATAATACAGCTA
Found at i:54330590 original size:38 final size:39
Alignment explanation
Indices: 54330527--54330610 Score: 100
Period size: 38 Copynumber: 2.1 Consensus size: 39
54330517 GGAATAAAAT
*
54330527 TATGTATTTTTCAATGAACCATATG-TTGACACGTCTGA
1 TATGTATTTTTCAATGAACAATATGTTTGACACGTCTGA
* *
54330565 TATGTATTTTTCAATTAA-AATTATGTATTTTACACGTCTGA
1 TATGTATTTTTCAATGAACAA-TATG--TTTGACACGTCTGA
54330606 TATGT
1 TATGT
54330611 TCATCACAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
37 1 0.03
38 21 0.54
41 17 0.44
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (39 bp):
TATGTATTTTTCAATGAACAATATGTTTGACACGTCTGA
Found at i:54335761 original size:29 final size:29
Alignment explanation
Indices: 54335722--54335800 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
54335712 CTTAATAATC
*
54335722 AACCACGCACACTTAGTGCCATATACTTT-A
1 AACC-CGCACACTTAGTGCCATACA-TTTCA
* *
54335752 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATACATTTCA
*
54335781 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
54335801 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATACATTTCA
Found at i:54336461 original size:2 final size:2
Alignment explanation
Indices: 54336443--54336496 Score: 81
Period size: 2 Copynumber: 27.0 Consensus size: 2
54336433 TGATGGCCGA
* * *
54336443 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54336485 AT AT AT AT AT AT
1 AT AT AT AT AT AT
54336497 CAACTATACT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (2 bp):
AT
Found at i:54340568 original size:40 final size:39
Alignment explanation
Indices: 54340523--54340730 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
54340513 CGGAATACAA
*
54340523 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
** *
54340563 CCGGATATAACGTCTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
54340603 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
54340643 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
54340683 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
54340723 CCGGATAT
1 CCGGATAT
54340731 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:54340663 original size:80 final size:80
Alignment explanation
Indices: 54340523--54340730 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
54340513 CGGAATACAA
* * *
54340523 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
*
54340588 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * *
54340603 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGT-A-GTCACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGT--CTAGCACAAA
*
54340666 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
** * ** * *
54340683 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
54340731 CATTCAATTG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 2 0.02
79 1 0.01
80 106 0.97
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:54348536 original size:40 final size:39
Alignment explanation
Indices: 54348491--54348698 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
54348481 CGGAATACAA
*
54348491 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
** *
54348531 CCGGATATAACGTCTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
54348571 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
54348611 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
54348651 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
54348691 CCGGATAT
1 CCGGATAT
54348699 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:54348631 original size:80 final size:80
Alignment explanation
Indices: 54348491--54348698 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
54348481 CGGAATACAA
* * *
54348491 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
*
54348556 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * *
54348571 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGT-A-GTCACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGT--CTAGCACAAA
*
54348634 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
** * ** * *
54348651 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
54348699 CATTCAATTG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 2 0.02
79 1 0.01
80 106 0.97
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:54353360 original size:27 final size:27
Alignment explanation
Indices: 54353292--54353362 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
54353282 CGACTTGTAA
* *
54353292 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
54353319 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
54353346 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
54353363 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:54353369 original size:27 final size:27
Alignment explanation
Indices: 54353346--54353469 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
54353336 CAATTTACAG
54353346 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
54353373 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
54353400 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
54353427 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
54353454 AATTACTAAAATACCC
1 AATTACCAAAATACCC
54353470 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:54353388 original size:54 final size:53
Alignment explanation
Indices: 54353330--54353469 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
54353320 ATTACCGTTT
54353330 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
54353384 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
54353438 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
54353470 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:54353481 original size:81 final size:81
Alignment explanation
Indices: 54353346--54353498 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
54353336 CAATTTACAG
* **
54353346 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
54353411 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
54353427 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
54353490 AATACCCTT
64 AATACCCTT
54353499 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:54353482 original size:27 final size:27
Alignment explanation
Indices: 54353452--54353513 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
54353442 CATGGTTTGA
54353452 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
54353479 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
54353506 AAAATTAC
1 AAAATTAC
54353514 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:54353482 original size:54 final size:54
Alignment explanation
Indices: 54353346--54353496 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
54353336 CAATTTACAG
* ** * * *
54353346 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
54353400 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
54353454 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
54353497 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:54354166 original size:28 final size:28
Alignment explanation
Indices: 54354133--54354229 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
54354123 GCGTAGATCA
54354133 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
54354161 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
54354189 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
54354217 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
54354230 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:54357055 original size:68 final size:70
Alignment explanation
Indices: 54356983--54357180 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
54356973 ACACCCTGTA
* * * *
54356983 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
54357045 ATAAAT
65 ATAAAT
*
54357051 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
54357116 ATAAAT
65 ATAAAT
*
54357122 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
54357181 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:54357094 original size:41 final size:41
Alignment explanation
Indices: 54357049--54357166 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
54357039 TGAAAGATAA
54357049 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
54357090 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
54357120 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
54357161 ATGTAG
1 ATGTAG
54357167 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:54357106 original size:71 final size:71
Alignment explanation
Indices: 54357017--54357180 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
54357007 GAGATGTATC
54357017 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
54357082 AGGACA
66 AGGACA
54357088 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
54357153 AGGACA
66 AGGACA
54357159 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
54357181 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:54364568 original size:68 final size:70
Alignment explanation
Indices: 54364496--54364693 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
54364486 ACACCCTGTA
* * * *
54364496 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
54364558 ATAAAT
65 ATAAAT
*
54364564 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
54364629 ATAAAT
65 ATAAAT
*
54364635 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
54364694 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:54364607 original size:41 final size:41
Alignment explanation
Indices: 54364562--54364679 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
54364552 TGAAAGATAA
54364562 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
54364603 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
54364633 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
54364674 ATGTAG
1 ATGTAG
54364680 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:54364619 original size:71 final size:71
Alignment explanation
Indices: 54364530--54364693 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
54364520 GAGATGTATC
54364530 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
54364595 AGGACA
66 AGGACA
54364601 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
54364666 AGGACA
66 AGGACA
54364672 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
54364694 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:54377962 original size:40 final size:39
Alignment explanation
Indices: 54377797--54377980 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
54377787 AAATTGAATG
* * *
54377797 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
54377837 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
54377877 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
54377917 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
54377956 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
54377981 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:54378005 original size:80 final size:81
Alignment explanation
Indices: 54377837--54378025 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
54377827 GCTGGAAATT
* * * *
54377837 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
54377902 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
54377918 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
54377981 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
54377997 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
54378026 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:54383438 original size:30 final size:30
Alignment explanation
Indices: 54383379--54383450 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
54383369 ACCGATACAA
** *
54383379 AGTACCTGAT-AATATGGTCACTAGTACAT
1 AGTACCTGATAAATATAATCACTAGCACAT
54383408 AGTACCTGATAAATATAATCACCT-GCACAT
1 AGTACCTGATAAATATAATCA-CTAGCACAT
*
54383438 AGTGCCTGATAAA
1 AGTACCTGATAAA
54383451 CTCAAATGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 10 0.27
30 25 0.68
31 2 0.05
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (30 bp):
AGTACCTGATAAATATAATCACTAGCACAT
Found at i:54386986 original size:48 final size:47
Alignment explanation
Indices: 54386888--54387153 Score: 258
Period size: 48 Copynumber: 5.6 Consensus size: 47
54386878 CAAATTACCA
* * * **
54386888 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATGTCGA-GGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TATCAATTTC-G
* * *
54386935 ATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCGTTTCAATTTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TATCAATTTCG
* *
54386983 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAACATTGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTATCA-ATT-TCG
*
54387031 ATGCCATGTCTCAGACATGGTCTTACACTGGCTCTC-AT-AATATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTATCAAT-TT--CG
54387079 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TAT-AATATTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTATCAAT-TT-C-G
** *
54387127 ATGCCATGTTTCAAACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
54387154 GTAGCACACA
Statistics
Matches: 190, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
46 5 0.03
47 23 0.12
48 161 0.85
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTATCAATTTCG
Found at i:54387051 original size:96 final size:95
Alignment explanation
Indices: 54386888--54387158 Score: 327
Period size: 96 Copynumber: 2.8 Consensus size: 95
54386878 CAAATTACCA
* ** * * *
54386888 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATGTCGA-GGCTGATGCCATGTCCCAGAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAC-ATTGCTGATGCCATGTCTCAGAC
*
54386951 ATGGTCTTACACTAGCTCTCGTTTCAAT-TT-CG
65 ATGGTCTTACACTAGCTCTC--AT-AATATTCCG
*
54386983 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTG-TCAATGCCATGTCTCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCT-GATGCCATGTCTCAGAC
*
54387047 ATGGTCTTACACTGGCTCTCATAATATTGCCG
65 ATGGTCTTACACTAGCTCTCATAATATT-CCG
* * * *
54387079 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATATTGCTGATGCCATGTTTCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCTGATGCCATGTCTCAGACA
*
54387144 TGGTCTTACAGTAGC
66 TGGTCTTACACTAGC
54387159 ACACATATCA
Statistics
Matches: 153, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
93 3 0.02
94 3 0.02
95 20 0.13
96 126 0.82
97 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATTGCTGATGCCATGTCTCAGACA
TGGTCTTACACTAGCTCTCATAATATTCCG
Found at i:54389640 original size:12 final size:12
Alignment explanation
Indices: 54389623--54389652 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
54389613 CAAGGGTTTT
54389623 CACACGGCCTGG
1 CACACGGCCTGG
54389635 CACACGGCCTGG
1 CACACGGCCTGG
54389647 CACACG
1 CACACG
54389653 CCCGTGTGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.20, C:0.43, G:0.30, T:0.07
Consensus pattern (12 bp):
CACACGGCCTGG
Found at i:54390801 original size:46 final size:48
Alignment explanation
Indices: 54390638--54390800 Score: 183
Period size: 47 Copynumber: 3.5 Consensus size: 48
54390628 AGGGTAAGGT
* * * *
54390638 GTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCA-A
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCATA
* * * *
54390685 GTCGATGTCATGTCCCAGACATGGTCTTACACTGAC-TATCCTCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCATA
* * *
54390733 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCATG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCATA
54390779 GTCGATG-CATGTCCCAGACATG
1 GTCGATGCCATGTCCCAGACATG
54390801 TTTTGCACTA
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
46 39 0.40
47 52 0.53
48 7 0.07
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCATA
Found at i:54390820 original size:46 final size:46
Alignment explanation
Indices: 54390638--54390822 Score: 155
Period size: 47 Copynumber: 4.0 Consensus size: 46
54390628 AGGGTAAGGT
* * *
54390638 GTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCATA--TCTCA-A
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACT-GC-CCTACGTCTCATG
* * * *
54390685 GTCGATGTCATGTCCCAGACATGGTCTTACACTG-ACTATCCTCTCGTA
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGCCCTA-CGTCTCATG
* * *
54390733 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCATG
1 GTCGATGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCATG
* *
54390779 GTCGATGCATGTCCCAGACATGTTTTGCACTAGCCCT-CGTCTCA
1 GTCGATGCATGTCCCAGACATGTCTTACACT-GCCCTACGTCTCA
54390823 ATGCCAATGC
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
44 2 0.02
46 53 0.46
47 54 0.47
48 7 0.06
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (46 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGCCCTACGTCTCATG
Found at i:54398260 original size:46 final size:46
Alignment explanation
Indices: 54398204--54398382 Score: 238
Period size: 46 Copynumber: 3.9 Consensus size: 46
54398194 GGATATTTGG
54398204 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
54398250 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
54398296 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
54398343 ACACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
54398383 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:54398362 original size:93 final size:93
Alignment explanation
Indices: 54398203--54398374 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
54398193 GGGATATTTG
* **
54398203 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
54398268 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
54398296 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
54398361 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
54398375 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:54401369 original size:15 final size:15
Alignment explanation
Indices: 54401330--54401408 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
54401320 GTATCTTGGG
*
54401330 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
54401345 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
54401360 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
54401374 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
54401389 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
54401403 TTTCTT
1 TTTCTT
54401409 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:54401393 original size:29 final size:29
Alignment explanation
Indices: 54401321--54401407 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
54401311 CATAGTATCG
* * * *
54401321 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
54401351 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
54401380 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
54401408 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:54403375 original size:46 final size:46
Alignment explanation
Indices: 54403322--54403496 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
54403312 TATTTGGGCA
54403322 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
54403368 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
54403415 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
54403460 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
54403497 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 22 0.20
46 55 0.50
47 25 0.23
49 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:54403476 original size:92 final size:93
Alignment explanation
Indices: 54403318--54403488 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
54403308 GGGATATTTG
* *
54403318 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
54403383 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
54403411 GGCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
54403475 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
54403489 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 50 0.67
93 25 0.33
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:54418492 original size:16 final size:17
Alignment explanation
Indices: 54418463--54418495 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
54418453 CACTAACATA
54418463 TTTTGATTTCTTTATTT
1 TTTTGATTTCTTTATTT
*
54418480 TTTTTATTT-TTTATTT
1 TTTTGATTTCTTTATTT
54418496 CTAACACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTGATTTCTTTATTT
Found at i:54420758 original size:6 final size:6
Alignment explanation
Indices: 54420747--54420795 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
54420737 TCCTCTTATC
54420747 TTTTTA TTTTTA TTTTTA -TTTTA TTTTTA TTTTTA -TTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
54420793 TTT
1 TTT
54420796 CAATTTTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
5 10 0.24
6 31 0.76
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:54420768 original size:11 final size:11
Alignment explanation
Indices: 54420748--54420805 Score: 73
Period size: 11 Copynumber: 5.2 Consensus size: 11
54420738 CCTCTTATCT
54420748 TTTTATTTTTA
1 TTTTATTTTTA
54420759 TTTT-TATTTTA
1 TTTTAT-TTTTA
54420770 TTTTTATTTTTA
1 -TTTTATTTTTA
54420782 TTTTATTTTTA
1 TTTTATTTTTA
* *
54420793 TTTCAATTTTA
1 TTTTATTTTTA
54420804 TT
1 TT
54420806 ATTTTCTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
10 1 0.02
11 31 0.74
12 9 0.21
13 1 0.02
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:54420770 original size:17 final size:17
Alignment explanation
Indices: 54420748--54420805 Score: 98
Period size: 17 Copynumber: 3.4 Consensus size: 17
54420738 CCTCTTATCT
54420748 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTTTA
54420765 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTTTA
**
54420782 TTTTATTTTTATTTCAA
1 TTTTATTTTTATTTTTA
54420799 TTTTATT
1 TTTTATT
54420806 ATTTTCTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTTTATTTTTA
Found at i:54426815 original size:11 final size:11
Alignment explanation
Indices: 54426799--54426828 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
54426789 ACTTAGACAC
54426799 ATTAAATAACT
1 ATTAAATAACT
*
54426810 ATTAAACAACT
1 ATTAAATAACT
54426821 ATTAAATA
1 ATTAAATA
54426829 TTTATTAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (11 bp):
ATTAAATAACT
Found at i:54429874 original size:47 final size:47
Alignment explanation
Indices: 54429764--54429931 Score: 158
Period size: 45 Copynumber: 3.7 Consensus size: 47
54429754 GCCCCTAAGT
* * * **
54429764 GAACTCGGACTCAACTCAACGAGCTC-G--G-CGTTCGCATCCATAAT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
54429808 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
54429855 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
54429900 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
54429932 TCAACCATCC
Statistics
Matches: 104, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 27 0.26
45 30 0.29
47 30 0.29
48 2 0.02
49 4 0.04
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:54429920 original size:92 final size:91
Alignment explanation
Indices: 54429764--54429931 Score: 300
Period size: 92 Copynumber: 1.8 Consensus size: 91
54429754 GCCCCTAAGT
*
54429764 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAATGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAATGAACTCGGACTCAACTCAACG
54429829 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
* *
54429855 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAATGAACTCGGACTCAACTCAAC
54429920 GAGTTCGGATGC
65 GAGTTCGGATGC
54429932 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 27 0.37
92 46 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAATGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:54430385 original size:30 final size:30
Alignment explanation
Indices: 54430351--54430410 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
54430341 ATTTAATACG
54430351 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
54430381 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
54430411 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:54437389 original size:45 final size:46
Alignment explanation
Indices: 54437325--54437495 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
54437315 TAACCCGCCC
*
54437325 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
54437370 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCA
* * *
54437418 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
54437463 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
54437496 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:54437441 original size:92 final size:92
Alignment explanation
Indices: 54437330--54437498 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
54437320 CGCCCTAAGT
*
54437330 GAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
54437394 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
54437422 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
54437487 GAGTTCGGATGC
66 GAGTTCGGATGC
54437499 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 62 0.84
93 12 0.16
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:54437952 original size:30 final size:30
Alignment explanation
Indices: 54437918--54437977 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
54437908 ATTTAATACG
54437918 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
54437948 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
54437978 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:54441495 original size:39 final size:39
Alignment explanation
Indices: 54441441--54441522 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
54441431 TTTGTTTATT
*
54441441 GTTTTTATTTGTGTTGCTTGAGGACAAGCAATGAATTAA
1 GTTTTTATTTGTGTTGCTTGAGGACAAACAATGAATTAA
*
54441480 GTTTTTATTTGTGTTGCTTGAGGACAAATAATGAATTAA
1 GTTTTTATTTGTGTTGCTTGAGGACAAACAATGAATTAA
54441519 GTTT
1 GTTT
54441523 GTGGGAGTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (39 bp):
GTTTTTATTTGTGTTGCTTGAGGACAAACAATGAATTAA
Found at i:54444088 original size:48 final size:48
Alignment explanation
Indices: 54444023--54444191 Score: 207
Period size: 48 Copynumber: 3.6 Consensus size: 48
54444013 ACATTATGAG
* ** *
54444023 AGCCAGTGTAAGACATGTCTGGGACATGCATGGGCCTCAAGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACA
* * * * *
54444071 AGCCAGTGTAAGTCATGTCTGGGACATGTATCGGCATTGAGA-CGA-G
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACA
* *
54444117 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATAGACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACA
* *
54444165 AGCTAGTGTAAGACCTGTCTGGGACAT
1 AGCCAGTGTAAGACATGTCTGGGACAT
54444192 AGCGTCAGCT
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
46 37 0.36
47 3 0.03
48 62 0.61
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACA
Found at i:54444130 original size:94 final size:94
Alignment explanation
Indices: 54443981--54444191 Score: 266
Period size: 94 Copynumber: 2.2 Consensus size: 94
54443971 TATGTGTGCT
* * *
54443981 AGTGTAAGACATGTTTGGGACATGGATCGGACACATT---ATGAGAGCCAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTGGGACATGTATCGG---CATTGAGACGAGAGCCAGTGTAAGACATGTCT
** *
54444043 GGGACATGCATGGGCCTCAAGATATACAAGCC
63 GGGACATGCATCAGCCTCAAGATAGACAAGCC
* *
54444075 AGTGTAAGTCATGTCTGGGACATGTATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGTATCGGCATTGAGACGAGAGCCAGTGTAAGACATGTCTGGG
** *
54444140 ACATGCATCAGCCTTGAGATAGACAAGCT
66 ACATGCATCAGCCTCAAGATAGACAAGCC
*
54444169 AGTGTAAGACCTGTCTGGGACAT
1 AGTGTAAGACATGTCTGGGACAT
54444192 AGCGTCAGCT
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
91 4 0.04
94 97 0.96
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGTATCGGCATTGAGACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGCATCAGCCTCAAGATAGACAAGCC
Found at i:54444157 original size:46 final size:48
Alignment explanation
Indices: 54443978--54444191 Score: 208
Period size: 46 Copynumber: 4.5 Consensus size: 48
54443968 GGATATGTGT
* * *
54443978 GCTAGTGTAAGACATGTTTGGGACATGGATCGGACACATT---AT-GA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-TTGAGATAGACAA
* * ** *
54444024 GCCAGTGTAAGACATGTCTGGGACATGCATGGGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACAA
* * * * * *
54444072 GCCAGTGTAAGTCATGTCTGGGACATGTATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACAA
*
54444118 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATAGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACAA
*
54444166 GCTAGTGTAAGACCTGTCTGGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
54444192 AGCGTCAGCT
Statistics
Matches: 137, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 1 0.01
46 68 0.50
47 4 0.03
48 62 0.45
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAGACAA
Found at i:54444289 original size:49 final size:48
Alignment explanation
Indices: 54444230--54444339 Score: 136
Period size: 48 Copynumber: 2.3 Consensus size: 48
54444220 AACCTGCTTG
54444230 GGACATGGCATCGGCAC-CG-ATA-GATAAGAAACAGTGTAAGACCTATCTA
1 GGACATGGCATCGGC-CTCGAATATGA-AAG--ACAGTGTAAGACCTATCTA
* * *
54444279 GGACACGGCATCGGCCTCGAATATGAAAGTCAGTGTAAGACCTGTCTA
1 GGACATGGCATCGGCCTCGAATATGAAAGACAGTGTAAGACCTATCTA
54444327 GGACATGGCATCG
1 GGACATGGCATCG
54444340 TCATCTTATC
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
48 30 0.56
49 16 0.30
50 6 0.11
51 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (48 bp):
GGACATGGCATCGGCCTCGAATATGAAAGACAGTGTAAGACCTATCTA
Found at i:54449773 original size:24 final size:24
Alignment explanation
Indices: 54449722--54449889 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
54449712 GCTTTATCAT
*
54449722 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
54449747 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
54449771 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
54449795 GTAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
54449819 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
54449843 ATAACTGGGGCATAAGCCTTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
54449867 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
54449890 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
24 117 0.91
25 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:54449964 original size:20 final size:20
Alignment explanation
Indices: 54449939--54450005 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
54449929 TTATGAATAC
54449939 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
54449959 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
54449979 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
54449999 ACCATGT
1 ATCATGT
54450006 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:54449970 original size:11 final size:11
Alignment explanation
Indices: 54449939--54449994 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
54449929 TTATGAATAC
54449939 ATCATGTGCAT
1 ATCATGTGCAT
*
54449950 ATCA--TACAT
1 ATCATGTGCAT
54449959 ATCATGTGCAT
1 ATCATGTGCAT
*
54449970 ATCA--TACAT
1 ATCATGTGCAT
*
54449979 GTCATGTGCAT
1 ATCATGTGCAT
54449990 ATCAT
1 ATCAT
54449995 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:54450074 original size:25 final size:25
Alignment explanation
Indices: 54450042--54450089 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
54450032 ATATATAAAC
* * *
54450042 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
54450067 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
54450090 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:54457583 original size:33 final size:33
Alignment explanation
Indices: 54457545--54457608 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
54457535 ATTATATGTG
54457545 ACTAATTGTAACACACCATATTTAATCATCACA
1 ACTAATTGTAACACACCATATTTAATCATCACA
54457578 ACTAATTGTAACACACCATATTTAATCATCA
1 ACTAATTGTAACACACCATATTTAATCATCA
54457609 TAAGAACATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.31
Consensus pattern (33 bp):
ACTAATTGTAACACACCATATTTAATCATCACA
Found at i:54462998 original size:47 final size:47
Alignment explanation
Indices: 54462947--54463292 Score: 523
Period size: 47 Copynumber: 7.4 Consensus size: 47
54462937 GATGTACAAG
* * *
54462947 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54462994 GTGTGTATATGTGATAAGTCCGAATGGCCTATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54463041 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
54463088 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG-ATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54463134 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54463181 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
54463228 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54463275 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
54463293 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 44 0.16
47 232 0.84
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:54463264 original size:187 final size:187
Alignment explanation
Indices: 54462947--54463292 Score: 548
Period size: 187 Copynumber: 1.9 Consensus size: 187
54462937 GATGTACAAG
* * * * *
54462947 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * * * * *
54463012 TCCGAATGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGA
66 GCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGA
* *
54463077 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGATGTGAAA
131 TGAATGTGAAAGTGAATAAATGTGATAAGGCCGAATGGCCAATGTGATGATGTGAAA
*
54463134 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
54463199 GCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGA
66 GCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGA
*
54463264 TGGATGTGAAAGTGAATAAATGTGATAAG
131 TGAATGTGAAAGTGAATAAATGTGATAAG
54463293 TCCCGAAGGG
Statistics
Matches: 143, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
187 143 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (187 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGA
TGAATGTGAAAGTGAATAAATGTGATAAGGCCGAATGGCCAATGTGATGATGTGAAA
Found at i:54463967 original size:47 final size:47
Alignment explanation
Indices: 54463916--54464262 Score: 523
Period size: 47 Copynumber: 7.4 Consensus size: 47
54463906 GATGTACAAG
* * *
54463916 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54463963 GTGTGTATATGTGATAAGTCCGAATGGCCTATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54464010 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54464057 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54464104 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54464151 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
54464198 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54464245 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
54464263 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:54464767 original size:970 final size:970
Alignment explanation
Indices: 54462888--54467736 Score: 9682
Period size: 970 Copynumber: 5.0 Consensus size: 970
54462878 AGTGAAGCTA
54462888 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
1 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
54462953 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
54463018 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
54463083 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT-GATGTGAAAGTGTATATATGTG
196 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
54463147 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
261 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
54463212 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
326 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
54463277 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
391 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
54463342 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
456 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
54463407 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
521 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
54463472 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
586 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
54463537 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
651 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
54463602 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
716 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
54463667 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
781 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
54463732 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
846 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
54463797 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
911 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
54463857 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
1 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
54463922 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
54463987 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
54464052 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
196 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
54464117 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
261 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
54464182 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
326 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
54464247 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
391 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
54464312 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
456 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
54464377 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
521 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
54464442 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
586 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
54464507 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
651 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
54464572 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
716 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
54464637 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
781 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
54464702 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
846 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
54464767 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
911 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
54464827 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
1 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
54464892 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
54464957 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
54465022 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
196 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
54465087 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
261 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
54465152 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
326 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
54465217 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
391 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
54465282 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
456 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
54465347 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
521 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
54465412 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
586 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
*
54465477 TGATCTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
651 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
54465542 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
716 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
54465607 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
781 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
54465672 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
846 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
54465737 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
911 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
54465797 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
1 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
54465862 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
54465927 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
54465992 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
196 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
54466057 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
261 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
54466122 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
326 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
54466187 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
391 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
54466252 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
456 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
54466317 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
521 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
54466382 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
586 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
54466447 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
651 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
54466512 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
716 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
54466577 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
781 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
54466642 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
846 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
54466707 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
911 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
54466767 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
1 TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
54466832 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
54466897 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
54466962 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
196 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
54467027 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
261 ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
54467092 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
326 TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
54467157 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
391 GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
54467222 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
456 GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
54467287 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
521 TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
54467352 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
586 TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
54467417 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
651 TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
54467482 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
716 TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
54467547 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
781 GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
54467612 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
846 TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
54467677 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
911 TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
54467737 GAGAAATCTT
Statistics
Matches: 3877, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
969 237 0.06
970 3640 0.94
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (970 bp):
TAAGCCGTAAATGACTAGTATACCTAGTCAATTTTGTTATGATGAAATTGATGTACAAGGTGTGT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGTCCGAA
TGGCCTATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTG
ATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAA
TGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGT
GAATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAG
GCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCT
TTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACTTTGGTATTGAGTATCTGCAATAAG
TTACCATCAAATAAGTATTATGTATTTAAGACGTTCAGGTACGTATTACTTACTCATCAGTGGAG
TGATTTCGAGGTGAATTATCAGTATCAAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAA
TATGAGAATGATCTAATTGGTAATGGTATGCTTGTATAATGAAGTATGTGATGAAATATTCTTAT
GTATTAGTGCATATTCTGCTCAAAAGCCTTATGATTTGAGTATGGGTTGTGTAACACCCTGAATT
TGGGCCTAGAAGTATTGGGCCTTGAGTGTGGGTCCGTAAGGAGGTTTTATATAGGTATTTAATTG
TGTAATGAAATGACACAATTAAATGTCCACTTTAGTGGTTAATGGCTTTGAGAAGTGTTG
Found at i:54464937 original size:47 final size:47
Alignment explanation
Indices: 54464886--54465232 Score: 523
Period size: 47 Copynumber: 7.4 Consensus size: 47
54464876 GATGTACAAG
* * *
54464886 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54464933 GTGTGTATATGTGATAAGTCCGAATGGCCTATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54464980 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54465027 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54465074 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54465121 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
54465168 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54465215 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
54465233 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:54465907 original size:47 final size:47
Alignment explanation
Indices: 54465856--54466202 Score: 523
Period size: 47 Copynumber: 7.4 Consensus size: 47
54465846 GATGTACAAG
* * *
54465856 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54465903 GTGTGTATATGTGATAAGTCCGAATGGCCTATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54465950 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54465997 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54466044 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54466091 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
54466138 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54466185 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
54466203 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:54466877 original size:47 final size:47
Alignment explanation
Indices: 54466826--54467172 Score: 523
Period size: 47 Copynumber: 7.4 Consensus size: 47
54466816 GATGTACAAG
* * *
54466826 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54466873 GTGTGTATATGTGATAAGTCCGAATGGCCTATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54466920 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54466967 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54467014 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54467061 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
54467108 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54467155 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
54467173 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:54469085 original size:27 final size:27
Alignment explanation
Indices: 54468637--54469084 Score: 612
Period size: 27 Copynumber: 16.6 Consensus size: 27
54468627 AAAGTACTCC
54468637 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54468664 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
54468691 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
54468718 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
54468745 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
54468772 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
54468799 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
54468826 CAATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
54468853 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54468880 CGATTTACAGAATTATCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
54468907 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54468934 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
54468961 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54468988 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54469015 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54469042 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
54469069 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
54469085 TAAAATACCC
Statistics
Matches: 379, Mismatches: 38, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.01
27 375 0.99
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:54469121 original size:81 final size:81
Alignment explanation
Indices: 54468601--54469128 Score: 292
Period size: 81 Copynumber: 6.5 Consensus size: 81
54468591 CCAATTACTG
* * * *
54468601 AAATGCCCTCGACTTGTAAAATTACCA-AAGTACTCC-CGATTTACAGAATTACCGTTTTACCCT
1 AAATACCCTCGATTTATAGAATTACCACAA-TAC-CCTCGATTTACAGAATTACCGTTTTACCCT
* * * *
54468664 C-AGGTTATAGAATTACCG
64 CGA-TTTACAAAATTACCA
*** * * ****
54468682 TTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
54468746 AGTTTACAGAATTACTA
66 A-TTTACAAAATTACCA
*** * **** * * * * *
54468763 TTTTACCCTCGATTTACAGAATTACCGTTTTACCCCCAATTTACATAATTACCGTTTTACCCCCA
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* * *
54468828 ATTTACATAATTATCG
66 ATTTACAAAATTACCA
*** * **** * * *
54468844 TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCCCA
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
54468909 ATTTACATAATTACCG
66 ATTTACAAAATTACCA
*** * * * * ****
54468925 TTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
54468990 ATTTATAGAATTACCA
66 ATTTACAAAATTACCA
*** ***** * *
54469006 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
*
54469071 ATTTACAAAATTACTA
66 ATTTACAAAATTACCA
* * * *
54469087 AAATACCCTTGGTTTGT-GAAATTACCACAATACCCTCAATTT
1 AAATACCCTCGATTTATAG-AATTACCACAATACCCTCGATTT
54469129 GTAAAACTAC
Statistics
Matches: 383, Mismatches: 60, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
80 3 0.01
81 379 0.99
82 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (81 bp):
AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
ATTTACAAAATTACCA
Found at i:54470434 original size:20 final size:20
Alignment explanation
Indices: 54470409--54470451 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
54470399 ATTTTGATAA
54470409 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
54470429 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
54470449 ACA
1 ACA
54470452 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:54470459 original size:20 final size:20
Alignment explanation
Indices: 54470416--54470459 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
54470406 TAAACATGAT
* *
54470416 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
54470436 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
54470456 ATGT
1 ATGT
54470460 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:54470573 original size:24 final size:24
Alignment explanation
Indices: 54470505--54470692 Score: 260
Period size: 23 Copynumber: 8.0 Consensus size: 24
54470495 GAGGAAGTGA
54470505 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
54470528 TAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54470551 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54470575 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
54470598 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
54470621 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
54470645 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
54470669 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
54470693 ATGATAAAGC
Statistics
Matches: 149, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
22 9 0.06
23 67 0.45
24 62 0.42
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:54470598 original size:47 final size:46
Alignment explanation
Indices: 54470505--54470678 Score: 267
Period size: 47 Copynumber: 3.7 Consensus size: 46
54470495 GAGGAAGTGA
*
54470505 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATC
54470551 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCAGTTATC
* * *
54470598 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTATC
*
54470645 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
54470679 AGGCCTCCAG
Statistics
Matches: 117, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
46 35 0.30
47 73 0.62
48 5 0.04
49 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATC
Found at i:54472604 original size:38 final size:38
Alignment explanation
Indices: 54472545--54472638 Score: 170
Period size: 38 Copynumber: 2.4 Consensus size: 38
54472535 TCAATCATGC
*
54472545 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
54472584 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
54472622 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
54472639 ACTGTAAACG
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 43 0.80
39 11 0.20
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.37
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:54472881 original size:24 final size:24
Alignment explanation
Indices: 54472849--54472972 Score: 205
Period size: 24 Copynumber: 5.2 Consensus size: 24
54472839 GGCCTAGCTT
*
54472849 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
54472873 CTTTCAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
54472897 CTTTT-ATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
54472920 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
54472944 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
54472968 CTTTT
1 CTTTT
54472973 TCACTTCCTC
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 23 0.24
24 73 0.76
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:54472909 original size:47 final size:48
Alignment explanation
Indices: 54472849--54472971 Score: 203
Period size: 47 Copynumber: 2.6 Consensus size: 48
54472839 GGCCTAGCTT
*
54472849 CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCC
**
54472897 CTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCC
*
54472944 CTTTTGATAACTGGGGCATAAGCCCTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTT
54472972 TTCACTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 44 0.62
48 27 0.38
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCC
Found at i:54473047 original size:20 final size:20
Alignment explanation
Indices: 54473022--54473082 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
54473012 TTATGATTAC
54473022 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
54473042 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
54473062 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
54473082 A
1 A
54473083 CCATATCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:54473157 original size:25 final size:25
Alignment explanation
Indices: 54473125--54473172 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
54473115 ATACATAAAC
* * *
54473125 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
54473150 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
54473173 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:54476514 original size:40 final size:40
Alignment explanation
Indices: 54476451--54476671 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
54476441 ATTCGGATTG
54476451 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
54476490 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
54476530 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
54476570 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
54476610 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
54476650 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
54476672 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 29 0.17
40 141 0.83
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:54484634 original size:84 final size:84
Alignment explanation
Indices: 54484503--54484671 Score: 277
Period size: 84 Copynumber: 2.0 Consensus size: 84
54484493 GGATTGATAA
* * * *
54484503 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTGT
1 CCGGGCCAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGT
54484567 GCGAGTTACTATAACCGGG
66 GCGAGTTACTATAACCGGG
54484586 CCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTG
1 CCGGGCCAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTG
*
54484651 TGTGAGTTACTATAACCGGG
65 TGCGAGTTACTATAACCGGG
54484671 C
1 C
54484672 TAAGTCCCGA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
83 9 0.11
84 38 0.48
85 32 0.41
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (84 bp):
CCGGGCCAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGT
GCGAGTTACTATAACCGGG
Found at i:54484637 original size:40 final size:40
Alignment explanation
Indices: 54484499--54484723 Score: 287
Period size: 40 Copynumber: 5.6 Consensus size: 40
54484489 ATTCGGATTG
54484499 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
54484538 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
54484577 ATAACCGGGCCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAA-----CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
54484622 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
54484662 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
54484702 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
54484724 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 12, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
39 56 0.34
40 73 0.44
44 10 0.06
45 27 0.16
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:54493517 original size:33 final size:33
Alignment explanation
Indices: 54493479--54493542 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
54493469 ATTATATGTG
54493479 ACTAATTGTAACACACCATATTTAATCATCACA
1 ACTAATTGTAACACACCATATTTAATCATCACA
54493512 ACTAATTGTAACACACCATATTTAATCATCA
1 ACTAATTGTAACACACCATATTTAATCATCA
54493543 TAAGAACATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.31
Consensus pattern (33 bp):
ACTAATTGTAACACACCATATTTAATCATCACA
Found at i:54498939 original size:47 final size:47
Alignment explanation
Indices: 54498888--54499234 Score: 532
Period size: 47 Copynumber: 7.4 Consensus size: 47
54498878 GATGTACAAG
* * *
54498888 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54498935 GTGTGTATATGTGATAAGTCCGAATGGCCTATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
54498982 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
54499029 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54499076 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
54499123 GTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
54499170 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
54499217 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
54499235 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 278 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:54501146 original size:27 final size:27
Alignment explanation
Indices: 54500700--54501145 Score: 585
Period size: 27 Copynumber: 16.6 Consensus size: 27
54500690 AAAGTACTCC
*
54500700 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
54500727 C-AGGTTATAGAATTACCGTTTGACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
54500754 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
54500781 CGATTTACAGAATTACC-TTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
54500807 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
54500834 CGATTTACAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
54500860 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
54500887 CAATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
54500914 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54500941 CGATTTACAGAATTATCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
54500968 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54500995 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
54501022 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54501049 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54501076 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
54501103 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
54501130 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
54501146 TAAAATACCC
Statistics
Matches: 376, Mismatches: 37, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
25 1 0.00
26 48 0.13
27 325 0.86
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:54501182 original size:81 final size:81
Alignment explanation
Indices: 54500664--54501189 Score: 267
Period size: 81 Copynumber: 6.5 Consensus size: 81
54500654 CCAATTACTG
* * * * *
54500664 AAATGCCCTCGACTTGTAAAATTACCA-AAGTACTCC-CGATTTATAGAATTACCGTTTTACCCT
1 AAATACCCTCGATTTATAGAATTACCACAA-TAC-CCTCGATTTACAGAATTACCGTTTTACCCT
* * *
54500727 C-AGGTTATAGAATTACC-
64 CGA-TTTACAAAATTACCA
*** * * ****
54500744 GTTTGACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACC-TTTTACCCTC
1 AAAT-ACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTC
* *
54500808 -AGTTTACAGAATTACTA
65 GA-TTTACAAAATTACCA
*** * **** * * * *
54500825 TTTTACCCTCGATTTACAGAATTACCGTTTTACCC-CAATTTACATAATTACCGTTTTACCCCCA
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* * *
54500889 ATTTACATAATTATCG
66 ATTTACAAAATTACCA
*** * **** * * *
54500905 TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCCCA
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
54500970 ATTTACATAATTACCG
66 ATTTACAAAATTACCA
*** * * * * ****
54500986 TTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
* *
54501051 ATTTATAGAATTACCA
66 ATTTACAAAATTACCA
*** ***** * *
54501067 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
*
54501132 ATTTACAAAATTACTA
66 ATTTACAAAATTACCA
* * * *
54501148 AAATACCCTTGGTTTGT-GAAATTACCACAATACCCTCAATTT
1 AAATACCCTCGATTTATAG-AATTACCACAATACCCTCGATTT
54501190 GTAAAACTAC
Statistics
Matches: 379, Mismatches: 59, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
79 15 0.04
80 110 0.29
81 254 0.67
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (81 bp):
AAATACCCTCGATTTATAGAATTACCACAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
ATTTACAAAATTACCA
Found at i:54502496 original size:20 final size:20
Alignment explanation
Indices: 54502471--54502513 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
54502461 ATTTTGATAA
54502471 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
54502491 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
54502511 ACA
1 ACA
54502514 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:54502521 original size:20 final size:20
Alignment explanation
Indices: 54502478--54502521 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
54502468 TAAACATGAT
* *
54502478 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
54502498 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
54502518 ATGT
1 ATGT
54502522 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:54502622 original size:24 final size:24
Alignment explanation
Indices: 54502566--54502755 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
54502556 GAGGAAGTGA
54502566 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
54502589 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54502613 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54502637 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
54502661 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
54502684 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
54502708 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
54502732 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
54502756 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
23 43 0.28
24 99 0.65
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:54502635 original size:47 final size:47
Alignment explanation
Indices: 54502566--54502734 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
54502556 GAGGAAGTGA
54502566 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
54502613 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
54502661 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
54502708 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
54502735 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 70 0.61
48 45 0.39
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:54502689 original size:71 final size:71
Alignment explanation
Indices: 54502565--54502755 Score: 278
Period size: 71 Copynumber: 2.7 Consensus size: 71
54502555 GGAGGAAGTG
* *
54502565 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
54502630 AGTTAT
66 AGTTAT
* *
54502636 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
54502700 CAGTTAT
65 CAGTTAT
* *
54502707 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
54502756 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:54504668 original size:31 final size:31
Alignment explanation
Indices: 54504630--54504693 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
54504620 CCTTTTCATA
54504630 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
54504661 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
54504692 TT
1 TT
54504694 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Done.