Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 191 of 770
Found at i:57071101 original size:13 final size:14
Alignment explanation
Indices: 57071076--57071115 Score: 59
Period size: 12 Copynumber: 3.1 Consensus size: 14
57071066 ACTTATTGCC
57071076 TATTTTTTATATTA
1 TATTTTTTATATTA
57071090 TATTTTTT-TATTA
1 TATTTTTTATATTA
57071103 T-TTTTTTAT-TTA
1 TATTTTTTATATTA
57071115 T
1 T
57071116 TAACCCGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.40
13 7 0.28
14 8 0.32
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
TATTTTTTATATTA
Found at i:57071115 original size:12 final size:12
Alignment explanation
Indices: 57071076--57071116 Score: 57
Period size: 11 Copynumber: 3.3 Consensus size: 12
57071066 ACTTATTGCC
57071076 TATTTTTTATATT
1 TATTTTTT-TATT
57071089 ATATTTTTTTA-T
1 -TATTTTTTTATT
57071101 TATTTTTTTATT
1 TATTTTTTTATT
57071113 TATT
1 TATT
57071117 AACCCGTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 10 0.38
12 6 0.23
13 2 0.08
14 8 0.31
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TATTTTTTTATT
Found at i:57071679 original size:43 final size:43
Alignment explanation
Indices: 57071511--57071667 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
57071501 ATATAGTACA
* * *
57071511 ATGCCAACGTCTCAGACGTGGTCTTACACGTAATCACATATCA
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
57071554 ATGCC-ACTGTCCTAGACAG-GGTCTTACACG-AATCAAATAT-G
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGTAATCACATATCG
** * * *
57071595 ATGCTGATATCCCAGACATGGTCTTATACGTAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
*
57071638 ATGCCAACATCCCAGACGTAGTCTTACACG
1 ATGCCAACATCCCAGACGTGGTCTTACACG
57071668 AGAACACATA
Statistics
Matches: 91, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 21 0.23
42 21 0.23
43 48 0.53
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:57072235 original size:25 final size:29
Alignment explanation
Indices: 57072170--57072236 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
57072160 TATTCATACA
57072170 AGTCCATACATTTCATTTATTTCACATTTT
1 AGTCCATA-ATTTCATTTATTTCACATTTT
* *
57072200 AGTCCCTTAATTT-ATTTTTTTCA-A-TTT
1 AGT-CCATAATTTCATTTATTTCACATTTT
57072227 AGTCC-TAATT
1 AGTCCATAATT
57072237 ATTCAAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 5 0.15
26 2 0.06
27 6 0.18
28 1 0.03
29 9 0.26
30 7 0.21
31 4 0.12
ACGTcount: A:0.25, C:0.18, G:0.04, T:0.52
Consensus pattern (29 bp):
AGTCCATAATTTCATTTATTTCACATTTT
Found at i:57074099 original size:29 final size:29
Alignment explanation
Indices: 57074066--57074123 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
57074056 AAAGTAAACG
57074066 GAGTAAGCATTACAATGCTTAGTAAGTTT
1 GAGTAAGCATTACAATGCTTAGTAAGTTT
57074095 GAGTAAGCATTACAATGCTTAGTAAGTTT
1 GAGTAAGCATTACAATGCTTAGTAAGTTT
57074124 TAAGCAGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (29 bp):
GAGTAAGCATTACAATGCTTAGTAAGTTT
Found at i:57074824 original size:46 final size:46
Alignment explanation
Indices: 57074757--57074893 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
57074747 TATATACACA
* * * *
57074757 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCCCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
57074803 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
**
57074849 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
57074894 ATACACTTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:57074938 original size:47 final size:47
Alignment explanation
Indices: 57074867--57075385 Score: 792
Period size: 47 Copynumber: 11.1 Consensus size: 47
57074857 ACACATTTTG
* * * * * *
57074867 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
57074914 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
57074961 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
57075008 CATTGGCCATTCAGCCTTATCACACAT-TCGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-GCATGTTCACATTCATCA
*
57075055 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
57075102 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
57075149 CATTGGCCATTCGGCCTTATCTCACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
57075196 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
57075243 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
57075290 C-TTGGCCATTCAGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
57075336 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
57075383 CAT
1 CAT
57075386 AAAATCCTAA
Statistics
Matches: 447, Mismatches: 21, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 47 0.11
47 399 0.89
48 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:57075102 original size:25 final size:25
Alignment explanation
Indices: 57075073--57075150 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
57075063 ATTCGGCCTT
57075073 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
57075098 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
57075120 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
57075145 ATCACA
1 ATCACA
57075151 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:57077274 original size:42 final size:42
Alignment explanation
Indices: 57077204--57077285 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
57077194 GTTTTTCGGG
* * *
57077204 AAAAATGCCGCTGAAGACCATGACCTTTAGCGACGCTTTTAA
1 AAAAATGCCGCTAAAAACCAAGACCTTTAGCGACGCTTTTAA
* *
57077246 AAAAATGCCGCTAAAAACCAAGAGCTTTAGCGGCGCTTTT
1 AAAAATGCCGCTAAAAACCAAGACCTTTAGCGACGCTTTT
57077286 TTCACAAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (42 bp):
AAAAATGCCGCTAAAAACCAAGACCTTTAGCGACGCTTTTAA
Found at i:57080685 original size:26 final size:26
Alignment explanation
Indices: 57080656--57080705 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
57080646 AAGAATTACA
57080656 TAAAATTTGAAATCTTGAAAATTTTT
1 TAAAATTTGAAATCTTGAAAATTTTT
* * *
57080682 TAAAATTTTAATTCTTTAAAATTT
1 TAAAATTTGAAATCTTGAAAATTT
57080706 GAAATTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (26 bp):
TAAAATTTGAAATCTTGAAAATTTTT
Found at i:57080694 original size:16 final size:16
Alignment explanation
Indices: 57080675--57080705 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57080665 AAATCTTGAA
*
57080675 AATTTTTTAAAATTTT
1 AATTCTTTAAAATTTT
57080691 AATTCTTTAAAATTT
1 AATTCTTTAAAATTT
57080706 GAAATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTCTTTAAAATTTT
Found at i:57080883 original size:15 final size:15
Alignment explanation
Indices: 57080829--57080897 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
57080819 TACCCTAAAT
57080829 CCTAAACCCC-TAAC
1 CCTAAACCCCATAAC
* * *
57080843 ACCTATATCCTA-AAC
1 -CCTAAACCCCATAAC
57080858 CCTAAACCCCATAAC
1 CCTAAACCCCATAAC
57080873 CCGTAAA-CCCATAAC
1 CC-TAAACCCCATAAC
* *
57080888 TCTTAACCCC
1 CCTAAACCCC
57080898 TAAACCTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
14 11 0.26
15 27 0.64
16 4 0.10
ACGTcount: A:0.36, C:0.43, G:0.01, T:0.19
Consensus pattern (15 bp):
CCTAAACCCCATAAC
Found at i:57080960 original size:21 final size:21
Alignment explanation
Indices: 57080928--57080977 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
57080918 ATAAACCCTG
57080928 AACTTCTACCCCTTAATC-TCTA
1 AACTT-TACCCCTT-ATCATCTA
*
57080950 ACCTTTACCCCTTATCATCTA
1 AACTTTACCCCTTATCATCTA
57080971 AACTTTA
1 AACTTTA
57080978 AATGATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.12
21 18 0.72
22 4 0.16
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (21 bp):
AACTTTACCCCTTATCATCTA
Found at i:57081284 original size:7 final size:7
Alignment explanation
Indices: 57081246--57081283 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
57081236 TAGACCACAG
57081246 ACCTTAA
1 ACCTTAA
57081253 ACCTTAA
1 ACCTTAA
57081260 ACCTTAA
1 ACCTTAA
*
57081267 ACATTAA
1 ACCTTAA
*
57081274 ACCCTAA
1 ACCTTAA
57081281 ACC
1 ACC
57081284 CAAAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.24
Consensus pattern (7 bp):
ACCTTAA
Found at i:57081509 original size:41 final size:41
Alignment explanation
Indices: 57081448--57081627 Score: 243
Period size: 41 Copynumber: 4.4 Consensus size: 41
57081438 GGTTATATGA
*
57081448 CTTTTAGCGGCGTTTTACAAAAAGTGCCGCTAATGCTCCGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCGG
* *
57081489 CTTCTAGCGGCGTTTTACAAAAAGCGCCGCTAAAGCTCCGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCGG
* * * * *
57081530 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCAGT
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCGG
* * *
57081571 CTTTTAGCAGCGTTTTACCAAAAGCGCCGCTAGTGCTCCGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCGG
* *
57081612 TTTTTAGCAGCGTTTT
1 CTTTTAGCGGCGTTTT
57081628 TGGTAAAACG
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.31
Consensus pattern (41 bp):
CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCCGG
Found at i:57081645 original size:82 final size:82
Alignment explanation
Indices: 57081449--57081659 Score: 235
Period size: 82 Copynumber: 2.6 Consensus size: 82
57081439 GTTATATGAC
* * * * * * * * *
57081449 TTTTAGCGGCGTTTTACAAAAAGTGCCGCTAATGCTCCGGCTTCTAGCGGCGTTTTACAAAAAGC
1 TTTTAGCAGCGTTTTACCAAAAGCGCCACTATTGCTCAGTCTTTTAGCAGCGTTTTACAAAAAGC
57081514 GCCGCTAAAGCTCCGGT
66 GCCGCTAAAGCTCCGGT
* * *
57081531 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCAGTCTTTTAGCAGCGTTTTACCAAAAGC
1 TTTTAGCAGCGTTTTACCAAAAGCGCCACTATTGCTCAGTCTTTTAGCAGCGTTTTACAAAAAGC
**
57081596 GCCGCTAGTGCTCCGGT
66 GCCGCTAAAGCTCCGGT
*** * *
57081613 TTTTAGCAGCGTTTTTGGTAAAA-CGCCACTATTGCTCTGTGTTTTAG
1 TTTTAGCAGCG-TTTTACCAAAAGCGCCACTATTGCTCAGTCTTTTAG
57081660 AATTTTTGCG
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
82 103 0.93
83 8 0.07
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (82 bp):
TTTTAGCAGCGTTTTACCAAAAGCGCCACTATTGCTCAGTCTTTTAGCAGCGTTTTACAAAAAGC
GCCGCTAAAGCTCCGGT
Found at i:57081658 original size:41 final size:41
Alignment explanation
Indices: 57081449--57081659 Score: 178
Period size: 41 Copynumber: 5.1 Consensus size: 41
57081439 GTTATATGAC
* * * * *
57081449 TTTTAGCGGCGTTTTACAAAAAGTGCCGCTAATGCTCCG-G
1 TTTTAGCAGCGTTTTACCAAAAGCGCCGCTATTGCTCAGTG
* * * ** *
57081489 CTTCTAGCGGCGTTTTACAAAAAGCGCCGCTAAAGCTCCG-G
1 -TTTTAGCAGCGTTTTACCAAAAGCGCCGCTATTGCTCAGTG
* *
57081530 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCAGTC
1 -TTTTAGCAGCGTTTTACCAAAAGCGCCGCTATTGCTCAGTG
* *
57081572 TTTTAGCAGCGTTTTACCAAAAGCGCCGCTAGTGCTCCG-G
1 TTTTAGCAGCGTTTTACCAAAAGCGCCGCTATTGCTCAGTG
*** * *
57081612 TTTTTAGCAGCGTTTTTGGTAAAA-CGCCACTATTGCTCTGTG
1 -TTTTAGCAGCG-TTTTACCAAAAGCGCCGCTATTGCTCAGTG
57081654 TTTTAG
1 TTTTAG
57081660 AATTTTTGCG
Statistics
Matches: 146, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
41 137 0.94
42 9 0.06
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (41 bp):
TTTTAGCAGCGTTTTACCAAAAGCGCCGCTATTGCTCAGTG
Found at i:57084053 original size:40 final size:40
Alignment explanation
Indices: 57084000--57084475 Score: 826
Period size: 40 Copynumber: 11.9 Consensus size: 40
57083990 GAATACACAT
* *
57084000 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
57084040 CACCAGTACGAATGCTCTTTGGGACTTAACCCTGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
57084080 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
57084120 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
57084160 CACCAACACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
57084200 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
57084240 CACCAGCACGTATGCTCTTTGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
57084280 CACCAGCACGTATGCTCTTCGTGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
*
57084320 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
57084360 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
57084400 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
57084440 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGAT
57084476 CATATATAAC
Statistics
Matches: 414, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 414 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:57086074 original size:46 final size:45
Alignment explanation
Indices: 57085965--57086100 Score: 200
Period size: 46 Copynumber: 3.0 Consensus size: 45
57085955 TATATATACA
* * * *
57085965 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCATATC
**
57086010 CATCTCATACACGCTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC-CATATC
57086056 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACC-CATAT
57086101 ATACACTTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
45 33 0.41
46 48 0.59
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (45 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCCATATC
Found at i:57086145 original size:47 final size:47
Alignment explanation
Indices: 57086074--57086497 Score: 649
Period size: 47 Copynumber: 9.1 Consensus size: 47
57086064 ACACATTTCG
* * * * * *
57086074 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* * *
57086121 CATTGGCCATTCTGCCTTGTCACATATATGCATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
57086168 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
57086215 CATTGGCCATTCGGCCTTATCACACAT-TCGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-GCATGTTCACATTCATCA
*
57086262 CATTGGCCATTC-GCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
57086308 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
57086355 -ATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
57086401 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
57086448 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
57086495 CAT
1 CAT
57086498 AAAATCCTAA
Statistics
Matches: 353, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 92 0.26
47 261 0.74
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:57086192 original size:22 final size:22
Alignment explanation
Indices: 57086167--57086238 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
57086157 CACATTCATT
57086167 ACATTGGCCATTCGGCCTTATC
1 ACATTGGCCATTCGGCCTTATC
* * *
57086189 ACATATATG-CATGTTC-ACATTCATC
1 ACAT-T-GGCCA--TTCGGCCTT-ATC
57086214 ACATTGGCCATTCGGCCTTATC
1 ACATTGGCCATTCGGCCTTATC
57086236 ACA
1 ACA
57086239 CATTCGCATG
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (22 bp):
ACATTGGCCATTCGGCCTTATC
Found at i:57086265 original size:23 final size:22
Alignment explanation
Indices: 57086237--57086312 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 22
57086227 GGCCTTATCA
57086237 CACATTCGCATGTTCACATTCAT
1 CACATT-GCATGTTCACATTCAT
* *
57086260 CACATTGGCCA--TTCGCCTT-AT
1 CACATT-G-CATGTTCACATTCAT
57086281 CACACATATGCATGTTCACATTCAT
1 --CACAT-TGCATGTTCACATTCAT
57086306 CACATTG
1 CACATTG
57086313 GCCATTCGGC
Statistics
Matches: 41, Mismatches: 5, Indels: 15
0.67 0.08 0.25
Matches are distributed among these distances:
21 2 0.05
22 10 0.24
23 18 0.44
24 9 0.22
25 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
CACATTGCATGTTCACATTCAT
Found at i:57086320 original size:93 final size:94
Alignment explanation
Indices: 57086074--57086497 Score: 649
Period size: 93 Copynumber: 4.5 Consensus size: 94
57086064 ACACATTTCG
* * * * * * *
57086074 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTGCCT
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCT
* *
57086138 TGTCACATATATGCATGTTCACATTCATTA
65 TATCACATATATGCATGTTCACATTCATCA
57086168 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
57086233 ATCACACAT-TCGCATGTTCACATTCATCA
66 ATCACATATAT-GCATGTTCACATTCATCA
*
57086262 CATTGGCCATTC-GCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
57086326 ATCACATATATGCATGTTCACATTCATCA
66 ATCACATATATGCATGTTCACATTCATCA
57086355 -ATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
57086419 ATCTCATATATGCATGTTCACATTCATCA
66 ATCACATATATGCATGTTCACATTCATCA
* * * **
57086448 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
57086498 AAAATCCTAA
Statistics
Matches: 306, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
92 11 0.04
93 158 0.52
94 137 0.45
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATGCATGTTCACATTCATCA
Found at i:57086486 original size:140 final size:140
Alignment explanation
Indices: 57086074--57086497 Score: 647
Period size: 140 Copynumber: 3.0 Consensus size: 140
57086064 ACACATTTCG
* * * * * *
57086074 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTGCCT
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTC-GCCT
* *
57086138 TGTCACATATATGCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCACATATATGCATGT
64 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGT
57086203 TCACATTCATCA
129 TCACATTCATCA
*
57086215 CATTGGCCATTCGGCCTTATCACACAT-TCGCATGTTCACATTCATCACATTGGCCATTCGCCTT
1 CATTGGCCATTCGGCCTTATCACATATAT-GCATGTTCACATTCATCACATTGGCCATTCGCCTT
*
57086279 ATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
65 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
57086344 CACATTCATCA
130 CACATTCATCA
57086355 -ATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTC-GCCTT
* * * * **
57086419 ATCTCATATATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATATATACACATT
65 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
57086484 CACATTCATCA
130 CACATTCATCA
57086495 CAT
1 CAT
57086498 AAAATCCTAA
Statistics
Matches: 260, Mismatches: 18, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
139 55 0.21
140 155 0.60
141 50 0.19
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (140 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGCCTTA
TCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTC
ACATTCATCA
Found at i:57087831 original size:64 final size:64
Alignment explanation
Indices: 57087761--57087890 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
57087751 AAGTCAAGCC
57087761 TAGCTTAGGCTAGATCGAACATATATAATCTTTTAACTCAATTTATGAATCAAGACATATTAGT
1 TAGCTTAGGCTAGATCGAACATATATAATCTTTTAACTCAATTTATGAATCAAGACATATTAGT
*
57087825 TAGCTTAGGCTAGATCGAACATATATAATCTTTTAACTCAATTTATGAATGAAGACATATTAGT
1 TAGCTTAGGCTAGATCGAACATATATAATCTTTTAACTCAATTTATGAATCAAGACATATTAGT
57087889 TA
1 TA
57087891 TCAAAGGTTG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (64 bp):
TAGCTTAGGCTAGATCGAACATATATAATCTTTTAACTCAATTTATGAATCAAGACATATTAGT
Found at i:57092619 original size:45 final size:45
Alignment explanation
Indices: 57092570--57092702 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
57092560 TGATATCATT
* *
57092570 TCACCGGCATTATAGCCTTCTAGGCTCAAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
57092615 TCACCGGTATTATAGCCTGCTAGGCTTAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
57092660 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
57092703 CTGTACAATA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:57093347 original size:261 final size:261
Alignment explanation
Indices: 57092883--57093406 Score: 985
Period size: 261 Copynumber: 2.0 Consensus size: 261
57092873 TTATCATTTG
*
57092883 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
1 ATCATAAAAGCATATAACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
57092948 CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
66 CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
* *
57093013 AAAACTTACCTCGAATATTTTTGAATAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
131 AAAACTTACCTCAAATATTTTCGAATAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
*
57093078 TATCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAATTTATTAAAGTCCCAT
196 TATCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
57093143 C
261 C
*
57093144 ATCATAAAAGCATATAACATTTTACTTCTATATTATATTTTCCATTCGGCCATATACATACATTA
1 ATCATAAAAGCATATAACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
*
57093209 CAAGTAATACTTAATTCTCATAATTTGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
66 CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
57093274 AAAACTTACCTCAAATATTTTCGAATAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
131 AAAACTTACCTCAAATATTTTCGAATAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
*
57093339 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
196 TATCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
57093404 C
261 C
57093405 AT
1 AT
57093407 GCTAGCTTAT
Statistics
Matches: 256, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
261 256 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (261 bp):
ATCATAAAAGCATATAACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
AAAACTTACCTCAAATATTTTCGAATAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
TATCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
C
Found at i:57096497 original size:20 final size:20
Alignment explanation
Indices: 57096472--57096517 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
57096462 AAAATCATCC
*
57096472 CTGAAATTCTTCAATGCTGA
1 CTGAAATTCTTCAATGCCGA
57096492 CTGAAATTCTTCAATGCCGA
1 CTGAAATTCTTCAATGCCGA
57096512 CTGAAA
1 CTGAAA
57096518 CATCTTACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (20 bp):
CTGAAATTCTTCAATGCCGA
Found at i:57099085 original size:30 final size:30
Alignment explanation
Indices: 57099045--57099104 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
57099035 TTCTCGAGCC
57099045 TAGGGACAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGACAAAATG-GTAATTATGCAAAAGTT
* * *
57099075 TAGGGGCAAAATGGTAATTTTGTAAAAGTT
1 TAGGGACAAAATGGTAATTATGCAAAAGTT
57099105 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAATGGTAATTATGCAAAAGTT
Found at i:57099946 original size:100 final size:98
Alignment explanation
Indices: 57099753--57099981 Score: 334
Period size: 100 Copynumber: 2.3 Consensus size: 98
57099743 TATTGTGAGG
* *
57099753 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
*
57099818 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCTGATAA-TT-GA
* **
57099853 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
57099918 TAAGTGCAGGCTACTACGTGTACC-GATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCTGATAATTGA
* *
57099951 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
57099982 TGCGTACCAG
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
98 30 0.25
99 2 0.02
100 48 0.41
101 38 0.32
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCTGATAATTGA
Found at i:57102731 original size:16 final size:15
Alignment explanation
Indices: 57102693--57102731 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
57102683 TGGATTCTCG
*
57102693 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
57102708 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
57102723 TATTCTTGG
1 TA-TCTTGG
57102732 CTTCTTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:57105544 original size:49 final size:50
Alignment explanation
Indices: 57105464--57105709 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
57105454 AGCTATTGTG
*
57105464 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
57105514 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
57105564 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
57105614 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
57105664 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
57105710 GCTTCGGCTA
Statistics
Matches: 167, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
49 83 0.50
50 47 0.28
51 37 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:57108976 original size:27 final size:27
Alignment explanation
Indices: 57108946--57109053 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
57108936 GTAAATCTAC
57108946 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
57108973 AAACCAAAGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
57108999 AAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
57109029 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
57109054 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:57109051 original size:56 final size:55
Alignment explanation
Indices: 57108950--57109107 Score: 167
Period size: 54 Copynumber: 2.9 Consensus size: 55
57108940 ATCTACAAAC
* *
57108950 CAAGGGTATTTCAGTAATTTTGTAAACCAAAGGTATTTCT-ATAATTTTTAAAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAGAGGTATTT-TGGTAATTTTTAAAAA-T
* * * *
57109006 CAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAGAGGTATTTTGGTAATTTTTAAAAAT
** * *** *
57109060 TGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTT
1 CAAGGGTATTTCAGTAATTTTGTAAACCAGAGGTATTTTGGTAATTTT
57109108 ACAAACTAGG
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
54 37 0.43
55 12 0.14
56 37 0.43
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACCAGAGGTATTTTGGTAATTTTTAAAAAT
Found at i:57109059 original size:27 final size:27
Alignment explanation
Indices: 57108995--57109132 Score: 138
Period size: 27 Copynumber: 5.1 Consensus size: 27
57108985 TTTCTATAAT
* *
57108995 TTTTAAAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
57109023 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
57109050 TTTTACAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
57109077 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
57109104 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
57109131 TT
1 TT
57109133 CTATCCTACA
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
26 3 0.03
27 81 0.88
28 8 0.09
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:57109095 original size:54 final size:53
Alignment explanation
Indices: 57109008--57109132 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 53
57108998 TAAAAAGTCA
* *** * *
57109008 AGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
*
57109061 GAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
*
57109115 AGGGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATT
57109133 CTATCCTACA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.02
54 61 0.98
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
Found at i:57109145 original size:27 final size:28
Alignment explanation
Indices: 57109035--57109152 Score: 102
Period size: 27 Copynumber: 4.3 Consensus size: 28
57109025 TTGTAAATCA
* *
57109035 GGGGTATTTTGGTAATTTTACAAA-TTG
1 GGGGTATTTTGGTAATTCTACAAACTAG
* * *
57109062 AGGGTATTTCGGTAATT-TCACAAACCA-
1 GGGGTATTTTGGTAATTCT-ACAAACTAG
* *
57109089 GTGGTATTTTGGTAATTTTACAAACTA-
1 GGGGTATTTTGGTAATTCTACAAACTAG
**
57109116 GGGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGGTATTTTGGTAATTCTA-CAAACTAG
57109144 GGGGTATTT
1 GGGGTATTT
57109153 CAGTAATTTC
Statistics
Matches: 74, Mismatches: 12, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
26 1 0.01
27 60 0.81
28 13 0.18
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (28 bp):
GGGGTATTTTGGTAATTCTACAAACTAG
Found at i:57109185 original size:26 final size:25
Alignment explanation
Indices: 57109156--57109240 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
57109146 GGTATTTCAG
*
57109156 TAATTTCACAATCGAGGGTAAAACAA
1 TAATTTCA-AATCGAGGGTAAAACGA
* * *
57109182 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAA-TTT-CAAATCGAGGGTAAAACGA
*
57109209 TAATTCTATAAATCGAGGGTAAAACGA
1 TAATT-T-CAAATCGAGGGTAAAACGA
57109236 TAATT
1 TAATT
57109241 CTGTAAATCG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
26 5 0.10
27 43 0.88
28 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.29
Consensus pattern (25 bp):
TAATTTCAAATCGAGGGTAAAACGA
Found at i:57109201 original size:27 final size:27
Alignment explanation
Indices: 57109165--57109253 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
57109155 GTAATTTCAC
* *
57109165 AATCGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
57109192 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
57109219 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
57109246 AATCGAGG
1 AATCGAGG
57109254 TTACTTTAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:57109266 original size:54 final size:54
Alignment explanation
Indices: 57109165--57109281 Score: 144
Period size: 54 Copynumber: 2.2 Consensus size: 54
57109155 GTAATTTCAC
* * *
57109165 AATCGAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTACA
* * *** *
57109219 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGTTACTTTAGTAATTTTACA
1 AATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTACA
*
57109273 AGTCGAGGG
1 AATCGAGGG
57109282 CATTTCAATA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTACA
Found at i:57113613 original size:49 final size:49
Alignment explanation
Indices: 57113501--57113738 Score: 435
Period size: 49 Copynumber: 4.9 Consensus size: 49
57113491 CACACATATG
57113501 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--A
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
* *
57113548 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
57113597 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
57113646 CACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
57113695 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
57113739 CTATATCTCA
Statistics
Matches: 183, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 44 0.24
49 139 0.76
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:57117490 original size:86 final size:85
Alignment explanation
Indices: 57117266--57117770 Score: 522
Period size: 86 Copynumber: 5.9 Consensus size: 85
57117256 GTATTAAACG
* ** * *
57117266 TGGTCTTACATGTAATCACATATCGATGCCAATATCCCAAACGTGGTCTTACACG-AGAACACAT
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTA-ATCACAT
* *
57117330 ATCAATGCCACTGTCCTAGA-T
65 ATCGATGCCACTGTCC-AGACA
* * *
57117351 TGGGTCTTACACGTAAT-TCATATCGATGCCAACGTCCCAAACGTGGTATTACACGTAATCACAT
1 T-GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAT
57117415 ATCGATGCCACTGTCTCAGACA
65 ATCGATGCCACTGTC-CAGACA
* * * * * *
57117437 AGGTCATACATGTAATCACATATTGATGCCAACATCCCAGACGTCGTCTTACACGTAATCACATA
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAT-
* **
57117502 AT-GATGCCAAC-GTACCAAATG
65 ATCGATGCC-ACTGT-CCAGACA
* * ** * * *
57117523 TGGTGTTACACATAATCACATATCGATGCCATTGTTCCAGATAG-GGCCTTACACGTAATCACAT
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGA-CGTGGTCTTACACGTAATCACAT
57117587 ATCGATGCCACTGTCCAAGACA
65 ATCGATGCCACTGTCC-AGACA
* * * *
57117609 GGGTCTTATACGTAATCACTTATCGATGCCAACGTCTCAGACGTGGTCTTACACGTAATCACATA
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATA
*
57117674 TCGAAGCCGAC-GTCACAGACA
66 TCGATGCC-ACTGTC-CAGACA
** * *
57117695 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCTTGACGTGGTCTTACATG-AGAACACAT
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTA-ATCACAT
*
57117759 ATTGATGCCACT
65 ATCGATGCCACT
57117771 AAAAGATGGA
Statistics
Matches: 345, Mismatches: 58, Indels: 33
0.79 0.13 0.08
Matches are distributed among these distances:
85 81 0.23
86 255 0.74
87 9 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (85 bp):
TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATA
TCGATGCCACTGTCCAGACA
Found at i:57117768 original size:43 final size:43
Alignment explanation
Indices: 57117236--57117747 Score: 467
Period size: 43 Copynumber: 11.9 Consensus size: 43
57117226 CACATATCGG
** * *
57117236 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACATGT
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
** * *
57117279 AATCACATATCGATGCCAATATCCCAAACGTGGTCTTACACG-
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
* * *
57117321 AGAACACATATCAATGCC-ACTGTCCTAGA-TTGGGTCTTACACGT
1 A-ATCACATATCGATGCCAAC-GTCCTAGACGT-GGTCTTACACGT
* * * *
57117365 AAT-TCATATCGATGCCAACGTCCCAAACGTGGTATTACACGT
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
** * *
57117407 AATCACATATCGATGCC-ACTGT-CTCAGACAAGGTCATACATGT
1 AATCACATATCGATGCCAAC-GTCCT-AGACGTGGTCTTACACGT
* * * *
57117450 AATCACATATTGATGCCAACATCCCAGACGTCGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
* * * *
57117493 AATCACATAAT-GATGCCAACGTACC-AAATGTGGTGTTACACAT
1 AATCACAT-ATCGATGCCAACGT-CCTAGACGTGGTCTTACACGT
** * *
57117536 AATCACATATCGATGCCATTGTTCC-AGATAG-GGCCTTACACGT
1 AATCACATATCGATGCCAACG-TCCTAGA-CGTGGTCTTACACGT
* *
57117579 AATCACATATCGATGCC-ACTGTCCAAGACAG-GGTCTTATACGT
1 AATCACATATCGATGCCAAC-GTCCTAGAC-GTGGTCTTACACGT
*
57117622 AATCACTTATCGATGCCAACGT-CTCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCT-AGACGTGGTCTTACACGT
* * *
57117665 AATCACATATCGAAGCCGACGTCAC-AGACATGGTCTTACACGT
1 AATCACATATCGATGCCAACGTC-CTAGACGTGGTCTTACACGT
*
57117708 AATCACATATCGATGCCAACGTCCTTGACGTGGTCTTACA
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACA
57117748 TGAGAACACA
Statistics
Matches: 379, Mismatches: 65, Indels: 50
0.77 0.13 0.10
Matches are distributed among these distances:
42 45 0.12
43 321 0.85
44 12 0.03
45 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGT
Found at i:57122092 original size:18 final size:18
Alignment explanation
Indices: 57122069--57122104 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
57122059 CTAAAACTCA
*
57122069 CCCAAAGCCGAATTCTTT
1 CCCAAAACCGAATTCTTT
*
57122087 CCCAAAACCGATTTCTTT
1 CCCAAAACCGAATTCTTT
57122105 TGAGTACCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.33, G:0.08, T:0.31
Consensus pattern (18 bp):
CCCAAAACCGAATTCTTT
Found at i:57128068 original size:40 final size:40
Alignment explanation
Indices: 57127979--57128199 Score: 408
Period size: 40 Copynumber: 5.5 Consensus size: 40
57127969 CAATTGAGGA
57127979 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCT-GTTGT
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
57128018 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
57128058 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
57128098 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
*
57128138 TATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
1 TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
* *
57128178 TATATCCGGGCTAAATCCCGAA
1 TATATCCGGGTTAAGTCCCGAA
57128200 TGCAATTGGG
Statistics
Matches: 177, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 34 0.19
40 143 0.81
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.32
Consensus pattern (40 bp):
TATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGT
Found at i:57135816 original size:40 final size:40
Alignment explanation
Indices: 57135761--57135907 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
57135751 CAATTGAAGA
57135761 TTATATCCAGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCAGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
57135801 TTATATCCAGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCAGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
57135841 TTATTTCC-GAGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCAG-GTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
57135881 TTATATCCGGGCTAAATCCCGAAGGCA
1 TTATATCCAGGTTAAGTCCCGAAGGCA
57135908 ATTGGGTTGG
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (40 bp):
TTATATCCAGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:57144727 original size:19 final size:20
Alignment explanation
Indices: 57144703--57144740 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
57144693 GGTACCACCA
57144703 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
57144722 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
57144741 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:57145080 original size:93 final size:93
Alignment explanation
Indices: 57144970--57145140 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
57144960 GCCCCTAAGT
* *
57144970 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57145035 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
57145063 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57145128 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57145141 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57145137 original size:46 final size:46
Alignment explanation
Indices: 57144965--57145137 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
57144955 AACCCGCCCC
* * * *
57144965 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
57145011 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
57145059 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
57145104 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57145138 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:57152276 original size:19 final size:20
Alignment explanation
Indices: 57152252--57152289 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
57152242 GGTACCACCA
57152252 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
57152271 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
57152290 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:57152628 original size:93 final size:93
Alignment explanation
Indices: 57152518--57152688 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
57152508 GCCCCTAAGT
* *
57152518 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57152583 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
57152611 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57152676 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57152689 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57152685 original size:46 final size:46
Alignment explanation
Indices: 57152513--57152685 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
57152503 AACCCGCCCC
* * * *
57152513 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
57152559 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
57152607 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
57152652 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57152686 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:57155110 original size:27 final size:27
Alignment explanation
Indices: 57155071--57155151 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
57155061 CTCATATCTA
* *
57155071 TAGGCTAGCATTACTGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCTTG
* *
57155098 TAGGGTAGAATTACTGAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATACCCTTG
**
57155125 TAGGGTAGAATTACCAAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCTTG
57155152 GTTTATAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCTTG
Found at i:57155338 original size:27 final size:27
Alignment explanation
Indices: 57155133--57155371 Score: 216
Period size: 27 Copynumber: 8.9 Consensus size: 27
57155123 TGTAGGGTAG
* * *
57155133 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTCGATTTGTAA
* *
57155160 AATTACCAAAATA-CTTCTGGTTTGTAA
1 AATTACCAAAATACCCTC-GATTTGTAA
*
57155187 AATTACCAAAATACCC-CTGGTTTGTAA
1 AATTACCAAAATACCCTC-GATTTGTAA
*
57155214 AATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
*
57155241 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCTC-GATTTGTAA
** **
57155268 AATTACTGAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
** *
57155295 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
* ** *
57155322 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCAAAATACCCTCGATTTGTAA
***
57155349 AATTACCATTTTACCCTCGATTT
1 AATTACCAAAATACCCTCGATTT
57155372 ACAGAATTAC
Statistics
Matches: 182, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.02
27 172 0.95
28 6 0.03
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:57155372 original size:27 final size:27
Alignment explanation
Indices: 57155333--57155742 Score: 509
Period size: 27 Copynumber: 15.2 Consensus size: 27
57155323 ATTACCAAAG
**
57155333 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
57155360 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
57155387 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
57155414 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
57155441 TACCCTAGATTTATAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
57155468 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
57155495 TACCTTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
57155522 TACCCTTGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
57155549 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
57155576 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
57155603 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * **
57155630 TATCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
57155657 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
57155684 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
57155711 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
57155738 TACCC
1 TACCC
57155743 CTAGGGTGTT
Statistics
Matches: 335, Mismatches: 44, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 332 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:57156069 original size:2 final size:2
Alignment explanation
Indices: 57156062--57156099 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
57156052 GCTTTGCCAC
57156062 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57156100 CTGTTCTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57156333 original size:25 final size:25
Alignment explanation
Indices: 57156305--57156390 Score: 103
Period size: 25 Copynumber: 3.7 Consensus size: 25
57156295 CCTGATACTG
57156305 ATTCTGATTCTAATTCTGTCACCT-
1 ATTCTGATTCTAATTCTGTCACCTA
57156329 A-----ATTCTAATTCTGTCACCTA
1 ATTCTGATTCTAATTCTGTCACCTA
*
57156349 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTAATTCTGTCACCTA
* *
57156374 ATCCTGATTCTGATTCT
1 ATTCTGATTCTAATTCT
57156391 CATTTTGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
19 18 0.33
20 1 0.02
24 1 0.02
25 34 0.63
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.44
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACCTA
Found at i:57156335 original size:19 final size:19
Alignment explanation
Indices: 57156311--57156360 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
57156301 ACTGATTCTG
57156311 ATTCTAATTCTGTCACCTA
1 ATTCTAATTCTGTCACCTA
57156330 ATTCTAATTCTGTCACCTA
1 ATTCTAATTCTGTCACCTA
*
57156349 ATTCTGATTCTG
1 ATTCTAATTCTG
57156361 ATTCTGTCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (19 bp):
ATTCTAATTCTGTCACCTA
Found at i:57156340 original size:31 final size:31
Alignment explanation
Indices: 57156274--57156341 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
57156264 TTGCATTCAC
* * * * *
57156274 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTA
*
57156305 ATTCTGATTCTAATTCTGTCACCTAATTCTA
1 ATTCTGATTCTAATTCTGTCACCTAATACTA
57156336 ATTCTG
1 ATTCTG
57156342 TCACCTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTA
Found at i:57156382 original size:19 final size:19
Alignment explanation
Indices: 57156317--57156385 Score: 66
Period size: 19 Copynumber: 3.3 Consensus size: 19
57156307 TCTGATTCTA
* *
57156317 ATTCTGTCACCTAATTCTA
1 ATTCTGTCACCTAATCCTG
57156336 ATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGTCACCTAA-TC-----CTG
57156361 ATTCTGTCACCTAATCCTG
1 ATTCTGTCACCTAATCCTG
57156380 ATTCTG
1 ATTCTG
57156386 ATTCTCATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
19 23 0.55
20 1 0.02
24 2 0.05
25 16 0.38
ACGTcount: A:0.22, C:0.26, G:0.10, T:0.42
Consensus pattern (19 bp):
ATTCTGTCACCTAATCCTG
Found at i:57161076 original size:71 final size:71
Alignment explanation
Indices: 57160992--57161193 Score: 397
Period size: 71 Copynumber: 2.9 Consensus size: 71
57160982 CGATTTGTCT
57160992 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57161057 CTTTCA
66 CTTTCA
57161063 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57161128 CTTTCA
66 CTTTCA
57161134 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCAT-CGACCTAGCTACAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACAT
57161194 GGGATACATC
Statistics
Matches: 131, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 14 0.11
71 117 0.89
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:57163170 original size:44 final size:45
Alignment explanation
Indices: 57163121--57163255 Score: 209
Period size: 45 Copynumber: 3.0 Consensus size: 45
57163111 GCTCGATATC
*
57163121 ATTTTACCGGCATTATAGCCTGCTAGGCTCAAA-ACCCGAATAGT
1 ATTTTACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
* *
57163165 ATTTTACCGGCATTATAGCCTGCTAGGCTTAAAGGGCCGAATAGT
1 ATTTTACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
* * *
57163210 ATCTCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 ATTTTACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
57163255 A
1 A
57163256 CTGTACAATA
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 32 0.39
45 50 0.61
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (45 bp):
ATTTTACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
Found at i:57163900 original size:261 final size:261
Alignment explanation
Indices: 57163436--57163959 Score: 1039
Period size: 261 Copynumber: 2.0 Consensus size: 261
57163426 TTATCATTTG
57163436 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
1 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
*
57163501 CAAGTAATACTTAATTCTCATGATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
66 CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
57163566 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
131 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
57163631 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
196 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
57163696 C
261 C
57163697 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
1 ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
57163762 CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
66 CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
57163827 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
131 AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
57163892 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
196 TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
57163957 C
261 C
57163958 AT
1 AT
57163960 GCTAGCTTAT
Statistics
Matches: 262, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
261 262 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.39
Consensus pattern (261 bp):
ATCATAAAAGCATATCACATTTTACTTCCATATTATATTTTCCATTCGGCCATATACATACATTA
CAAGTAATACTTAATTCTCATAATATGTCATGTCATTATCGAATATTATTTATGTTTAACTATTT
AAAACTTACCTCGAATATTTTCGAACAGTCTCGGATCGGCTATTCAACTACTTTCTCTTTTCCCC
TGTCCAACCTTGGTTCTCTATGCTCTTGAGCTAATTCAAACAAATTTAACTTATTAAAGTCCCAT
C
Found at i:57165509 original size:40 final size:40
Alignment explanation
Indices: 57165454--57165675 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
57165444 TATTCGAATG
* *
57165454 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
57165494 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
57165534 ATATCCGAGCTAAGCCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
57165574 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
57165614 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
57165654 ATATCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
57165676 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 13 0.08
40 145 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:57168989 original size:40 final size:39
Alignment explanation
Indices: 57168824--57169007 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57168814 AAATTGAATG
* * *
57168824 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57168864 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57168904 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57168944 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57168983 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57169008 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57169032 original size:80 final size:81
Alignment explanation
Indices: 57168864--57169052 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57168854 GCTGGAAATT
* * * *
57168864 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57168929 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57168945 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57169008 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57169024 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57169053 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57176732 original size:40 final size:40
Alignment explanation
Indices: 57176688--57176877 Score: 247
Period size: 40 Copynumber: 4.7 Consensus size: 40
57176678 GCTACTCGTT
* * * * *
57176688 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
*
57176728 CAAATGCCTTCGGGACTTAACCCGGATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
* *
57176768 TAAATGCCTTCGGGACTTAGCCCGGATATAGTTACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
* * *
57176808 CAAATGCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCA
*
57176849 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
57176878 CATTCGAGTA
Statistics
Matches: 130, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 3 0.02
40 97 0.75
41 27 0.21
42 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
Found at i:57179321 original size:47 final size:47
Alignment explanation
Indices: 57179259--57180121 Score: 1402
Period size: 47 Copynumber: 18.4 Consensus size: 47
57179249 TGCCCTTCGG
* * *
57179259 TTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* * * * * *
57179306 TTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGAC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* * *
57179353 TTATCTCATATATACACTTTCACATTCATCACATGGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
*
57179400 TTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
*
57179447 TTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
*
57179494 TTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* *
57179541 TTATCACATATATACACTTTCACATTCATCACTTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
57179588 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* *
57179635 TTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCAGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
*
57179682 TTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
*
57179729 TTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* *
57179776 TTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* *
57179823 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* * * *
57179870 TTATCACATATATACACTTTCACATTCATCACCTCGGCCATTAGGTC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* *
57179917 TTATCTCATATATACACTTTCACATTCATCATGTTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
57179964 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
*
57180011 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
* * *
57180058 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
*
57180105 TTATCACATATACACAC
1 TTATCACATATATACAC
57180122 CTTGTACATC
Statistics
Matches: 777, Mismatches: 39, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 777 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGCC
Found at i:57186886 original size:15 final size:15
Alignment explanation
Indices: 57186861--57186918 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
57186851 GAGATGACAT
*
57186861 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
57186876 GAAGTCCAAGAAAAA
1 GAAATCCAAGATAAA
*
57186891 GAAATCCTAGATAAA
1 GAAATCCAAGATAAA
57186906 GAAATCCAAGATA
1 GAAATCCAAGATA
57186919 CAATATCATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:57194761 original size:27 final size:27
Alignment explanation
Indices: 57194731--57194792 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
57194721 CAAAATAGTC
*
57194731 ATTTTACACTACAAGGGTATTTCTG-TA
1 ATTTTACACTACAAGGATATTT-TGATA
*
57194758 ATTTTACATTACAAGGATATTTTGATA
1 ATTTTACACTACAAGGATATTTTGATA
57194785 ATTTTACA
1 ATTTTACA
57194793 AATAGGGGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (27 bp):
ATTTTACACTACAAGGATATTTTGATA
Found at i:57194920 original size:27 final size:27
Alignment explanation
Indices: 57194744--57194913 Score: 141
Period size: 27 Copynumber: 6.3 Consensus size: 27
57194734 TTACACTACA
* *
57194744 AGGGTATTTCTG-TAATTTTAC-ATTACA
1 AGGGTATTTC-GATAATTTTACAAAT-CG
* * *
57194771 AGGATATTTTGATAATTTTACAAATAG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
57194798 GGGGTGTTTCGATAATCTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
57194825 AAGGTATTTCGGTAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
57194851 AGGGTATTTC-AGTAATTTCACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
57194878 GGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
57194905 AGGGTATTT
1 AGGGTATTT
57194914 AAATAATATC
Statistics
Matches: 112, Mismatches: 26, Indels: 10
0.76 0.18 0.07
Matches are distributed among these distances:
26 23 0.21
27 87 0.78
28 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:57203547 original size:258 final size:260
Alignment explanation
Indices: 57203082--57203549 Score: 699
Period size: 260 Copynumber: 1.8 Consensus size: 260
57203072 ACTACAGTTA
* * *
57203082 TAACAACCCATTTTTCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTTAATGAGTGAGC
1 TAACAACCCATTTTCCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTCAACGAGTGAGC
* * * *
57203147 TTGTAAATTTTATTAATTAATATTTATGAATCAAGTATAATGTTATTGAAGTTTCAATTTAATAA
66 TCGTAAATATTATTAATTAATATTTATGAATCAAGTATAATGATATTGAAGTTCCAATTTAATAA
* * *
57203212 AAGTTGCTAATTCATCGTATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTGGAA
131 AAGTTGCTAACTCATCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTAGAA
*
57203277 AATCAGGTATCGAGACCTTGTTTCTATAAACCGAGCCTATCAATATTTAATAAAATATTTAGTAG
196 AATCACGTATCGAGACCTTGTTTCTATAAACCGAGCCTATCAATATTTAATAAAATATTTAGTAG
* * * * * * *
57203342 TAACAACCCCTTTTCCAGTGGTGTCAGAAATAGTGGTTTTGGAACCACAAATTCGACGAGTGAGC
1 TAACAACCCATTTTCCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTCAACGAGTGAGC
* *
57203407 TCGTAAATATTATTAATTAATATTTATGATTCAGGTATAAT-AT-TTGAAGTTCCAATTTAATAA
66 TCGTAAATATTATTAATTAATATTTATGAATCAAGTATAATGATATTGAAGTTCCAATTTAATAA
* *
57203470 AATTTGCTAACT-AGTCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGTCAAGTGGTTTTAGA
131 AAGTTGCTAACTCA-TCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTAGA
*
57203534 AAATGACGTATCGAGA
195 AAATCACGTATCGAGA
57203550 TCTCATTTTT
Statistics
Matches: 184, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
257 1 0.01
258 90 0.49
259 1 0.01
260 92 0.50
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (260 bp):
TAACAACCCATTTTCCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTCAACGAGTGAGC
TCGTAAATATTATTAATTAATATTTATGAATCAAGTATAATGATATTGAAGTTCCAATTTAATAA
AAGTTGCTAACTCATCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTAGAA
AATCACGTATCGAGACCTTGTTTCTATAAACCGAGCCTATCAATATTTAATAAAATATTTAGTAG
Found at i:57203595 original size:258 final size:260
Alignment explanation
Indices: 57203082--57203584 Score: 690
Period size: 258 Copynumber: 1.9 Consensus size: 260
57203072 ACTACAGTTA
* * *
57203082 TAACAACCCATTTTTCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTTAATGAGTGAGC
1 TAACAACCCATTTTCCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTCAACGAGTGAGC
* * * *
57203147 TTGTAAATTTTATTAATTAATATTTATGAATCAAGTATAATGTTATTGAAGTTTCAATTTAATAA
66 TCGTAAATATTATTAATTAATATTTATGAATCAAGTATAATGATATTGAAGTTCCAATTTAATAA
* * *
57203212 AAGTTGCTAATTCATCGTATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTGGAA
131 AAGTTGCTAACTCATCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTAGAA
* ** *
57203277 AATCAGGTATCGAGACCTTGTTTCTATAAACCGAGCCTATCAATATTTAATAAAATATTTAGTAG
196 AATCACGTATCGAGACCTCATTTCTATAAACCGAGCCTATAAATATTTAATAAAATATTTAGTAG
* * * * * * *
57203342 TAACAACCCCTTTTCCAGTGGTGTCAGAAATAGTGGTTTTGGAACCACAAATTCGACGAGTGAGC
1 TAACAACCCATTTTCCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTCAACGAGTGAGC
* *
57203407 TCGTAAATATTATTAATTAATATTTATGATTCAGGTATAAT-AT-TTGAAGTTCCAATTTAATAA
66 TCGTAAATATTATTAATTAATATTTATGAATCAAGTATAATGATATTGAAGTTCCAATTTAATAA
* *
57203470 AATTTGCTAACT-AGTCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGTCAAGTGGTTTTAGA
131 AAGTTGCTAACTCA-TCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTAGA
* * * * *
57203534 AAATGACGTATCGAGATCTCATTTTTGTAAACTGAGCCCT-TAAATATTTAA
195 AAATCACGTATCGAGACCTCATTTCTATAAACCGAG-CCTATAAATATTTAA
57203585 CTGAATATTT
Statistics
Matches: 211, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
257 1 0.00
258 114 0.54
259 4 0.02
260 92 0.44
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (260 bp):
TAACAACCCATTTTCCAGTGGTGCCAAAAATAGTAGTTTCGAAACCACAAATTCAACGAGTGAGC
TCGTAAATATTATTAATTAATATTTATGAATCAAGTATAATGATATTGAAGTTCCAATTTAATAA
AAGTTGCTAACTCATCATATAGTCAAGTTCAAGTGGTTAATTCCTAAAGCCAAGTGGTTTTAGAA
AATCACGTATCGAGACCTCATTTCTATAAACCGAGCCTATAAATATTTAATAAAATATTTAGTAG
Found at i:57207410 original size:42 final size:42
Alignment explanation
Indices: 57207348--57207496 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 42
57207338 CCGAGGCTAT
*
57207348 GTGTAAGACCATATCTGGGATACGACATC-ATTATGAGACTT-T
1 GTGTAAGACCATATCTGGGATACGACATCGA-TATGAGA-TTCC
* * *
57207390 GTTTAAGACCATATTTGGGATATGACATCGATATGAGATTCC
1 GTGTAAGACCATATCTGGGATACGACATCGATATGAGATTCC
* * * * * *
57207432 GTGTAAGACCATAGCTAGGCTACTGGCATCGATACGAGATCCC
1 GTGTAAGACCATATCTGGGATAC-GACATCGATATGAGATTCC
* * *
57207475 ATATAAGACAATATCTGGGATA
1 GTGTAAGACCATATCTGGGATA
57207497 TGGTATTGGT
Statistics
Matches: 85, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.02
42 50 0.59
43 33 0.39
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATACGACATCGATATGAGATTCC
Found at i:57224297 original size:17 final size:18
Alignment explanation
Indices: 57224265--57224298 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57224255 CCATATTGCG
*
57224265 GCCCATGTGGGCCCACAC
1 GCCCATGTGAGCCCACAC
57224283 GCCCATGT-AGCCCACA
1 GCCCATGTGAGCCCACA
57224299 TAGCCTAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GCCCATGTGAGCCCACAC
Found at i:57226266 original size:33 final size:33
Alignment explanation
Indices: 57226228--57226294 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
57226218 CAGTCGATCC
*
57226228 AGAATTAATCTAACTTTATCCTCGGTATTAGAA
1 AGAATTAATCTAACTTTATCCTCGGTATCAGAA
*
57226261 AGAATTAATCTCACTTTATCCTCGGTATCAGAA
1 AGAATTAATCTAACTTTATCCTCGGTATCAGAA
57226294 A
1 A
57226295 CTAACTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (33 bp):
AGAATTAATCTAACTTTATCCTCGGTATCAGAA
Found at i:57251566 original size:40 final size:40
Alignment explanation
Indices: 57251521--57251650 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
57251511 CGGAATATAA
57251521 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
57251561 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
57251601 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
57251641 CCGGATATAA
1 CCGGATATAA
57251651 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57251671 original size:80 final size:80
Alignment explanation
Indices: 57251537--57251686 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
57251527 ATAACCACGT
* * *
57251537 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
57251602 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
57251617 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGGCTTAGC
57251681 CCGGAT
65 CCGGAT
57251687 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:57259593 original size:40 final size:40
Alignment explanation
Indices: 57259548--57259677 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
57259538 CGGAATATAA
57259548 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
57259588 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
57259628 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
57259668 CCGGATATAA
1 CCGGATATAA
57259678 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57264237 original size:46 final size:46
Alignment explanation
Indices: 57264127--57264469 Score: 360
Period size: 46 Copynumber: 7.6 Consensus size: 46
57264117 CATGATTTAG
* * * * *
57264127 ATGAGTAAGAGCATAGTTGAAGGACACTATGACATCTTATC-GAAA
1 ATGAATAAGACCATGGTTGAAAGACACTATGACATCATATCGGAAA
* * * * *
57264172 ATGAATAAGAGCATAGTTGAATGACACAATGACATCATATCAGAAA
1 ATGAATAAGACCATGGTTGAAAGACACTATGACATCATATCGGAAA
* * ** * *
57264218 ATGAATGAGACCATGGTTGAAAGACACAATGGTATCAAAT--AAAA
1 ATGAATAAGACCATGGTTGAAAGACACTATGACATCATATCGGAAA
* * *
57264262 AT--TTAAGACCATGGTTGAAAGACACTATGACGTCATATTGGAAA
1 ATGAATAAGACCATGGTTGAAAGACACTATGACATCATATCGGAAA
* *
57264306 ATGAATACGACCATGGTTGAAAGACA-TGATGGA-ATCATATTGGAAA
1 ATGAATAAGACCATGGTTGAAAGACACT-AT-GACATCATATCGGAAA
* * *
57264352 ATGAATAAGACCATGGTTGAAATG-CACTGTGGCATCATACCGGAAA
1 ATGAATAAGACCATGGTTGAAA-GACACTATGACATCATATCGGAAA
* *
57264398 ATAAATAAGACCATGGTTGAAAGACACTATGACAACATATCGGAAA
1 ATGAATAAGACCATGGTTGAAAGACACTATGACATCATATCGGAAA
*
57264444 GTGAATAAGACCATGGTTGAAAGACA
1 ATGAATAAGACCATGGTTGAAAGACA
57264470 TCAGGGCATC
Statistics
Matches: 252, Mismatches: 35, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
42 29 0.12
44 10 0.04
45 40 0.16
46 169 0.67
47 4 0.02
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.22
Consensus pattern (46 bp):
ATGAATAAGACCATGGTTGAAAGACACTATGACATCATATCGGAAA
Found at i:57268846 original size:17 final size:16
Alignment explanation
Indices: 57268824--57268865 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
57268814 TCCGAAGCTT
57268824 CAACAACATAAATCACA
1 CAACAAC-TAAATCACA
*
57268841 CAACAACTCAATCACA
1 CAACAACTAAATCACA
*
57268857 -ACCAACTAA
1 CAACAACTAA
57268866 GGACTCACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 7 0.32
16 8 0.36
17 7 0.32
ACGTcount: A:0.55, C:0.33, G:0.00, T:0.12
Consensus pattern (16 bp):
CAACAACTAAATCACA
Found at i:57272063 original size:37 final size:37
Alignment explanation
Indices: 57272003--57272074 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
57271993 AGCTCAGACG
57272003 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
*
57272040 AAATCTCCACACGTAGTCT-TCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGT-TATCGGGTCTTACCCGGA
57272075 ATATATTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
Found at i:57272275 original size:48 final size:49
Alignment explanation
Indices: 57272221--57272356 Score: 204
Period size: 48 Copynumber: 2.8 Consensus size: 49
57272211 ACACATCGCC
57272221 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
57272269 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * * *
57272319 TATATATTTCACA-TTGACCATTCGGTTTTGCCACATAT
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATAT
57272357 GCATGTTCAT
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
48 47 0.58
49 2 0.02
50 32 0.40
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:57272377 original size:45 final size:46
Alignment explanation
Indices: 57272327--57272442 Score: 146
Period size: 47 Copynumber: 2.5 Consensus size: 46
57272317 TATATATATT
* * *
57272327 TCACATTGACCATTCGG-TTTTGC-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCTTAT-CACACATATGCATGTTCACATTCA
* *
57272372 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTGACATTCA
1 TCACATTGGCCATTCGG-CTTATCACACATATGCATGTTCACATTCA
57272419 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGG-CTTATC
57272443 TCATATATAC
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
45 16 0.25
46 1 0.02
47 46 0.73
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCTTATCACACATATGCATGTTCACATTCA
Found at i:57272397 original size:22 final size:22
Alignment explanation
Indices: 57272371--57272442 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 22
57272361 GTTCATATTC
57272371 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
57272393 ATCACATATATG-CATGTTGACATT
1 ATCACAT-T-GGCCAT-TCGGCCTT
57272417 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
57272440 ATC
1 ATC
57272443 TCATATATAC
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
22 10 0.27
23 10 0.27
24 10 0.27
25 7 0.19
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:57272422 original size:47 final size:47
Alignment explanation
Indices: 57272353--57272450 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
57272343 GTTTTGCCAC
*
57272353 ATATGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
57272400 ATATGCATGTTGACATTCATCACATTGGCCATTCGGCCTTATCTCAT
1 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
57272447 ATAT
1 ATAT
57272451 ACACATAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
Found at i:57276508 original size:40 final size:40
Alignment explanation
Indices: 57276476--57276987 Score: 754
Period size: 40 Copynumber: 12.8 Consensus size: 40
57276466 CCAGCATGAT
* * * *
57276476 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
57276516 TGCTCTTCGGGGTTTAGCACAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
57276556 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57276596 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
57276636 TGCTCTTCCGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57276676 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
57276716 TGCTCTTCCGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
57276756 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
57276796 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57276836 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACTAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
57276876 TGCCCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
57276916 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
57276956 TGCCCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
57276988 CTCAATTCTC
Statistics
Matches: 420, Mismatches: 52, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 420 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:57278313 original size:37 final size:37
Alignment explanation
Indices: 57278254--57278325 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
57278244 AGCTCAGACG
*
57278254 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
57278291 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
57278326 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:57278528 original size:48 final size:49
Alignment explanation
Indices: 57278471--57278606 Score: 222
Period size: 48 Copynumber: 2.8 Consensus size: 49
57278461 GCACATCGCC
57278471 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
57278519 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* *
57278569 TATATATTTCACA-TTGACCATTCGGCTTTACCACATAT
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATAT
57278607 GCATGTTCAT
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
48 47 0.57
49 2 0.02
50 34 0.41
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (49 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:57278647 original size:22 final size:22
Alignment explanation
Indices: 57278621--57278692 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
57278611 GTTCATATTC
57278621 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
57278643 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
57278667 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
57278690 ATC
1 ATC
57278693 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:57278672 original size:47 final size:46
Alignment explanation
Indices: 57278577--57278700 Score: 187
Period size: 47 Copynumber: 2.7 Consensus size: 46
57278567 TATATATATT
* * * *
57278577 TCACATTGACCATTCGGCTTTA-CCACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCATATATGCATGTTCACATTCA
57278622 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CATATATGCATGTTCACATTCA
57278669 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATC-CATATAT
57278701 ACACATAAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 20 0.28
46 1 0.01
47 51 0.71
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCCATATATGCATGTTCACATTCA
Found at i:57286322 original size:40 final size:40
Alignment explanation
Indices: 57286255--57286406 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
57286245 AAATTGAATG
* * * *
57286255 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
57286295 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
**
57286335 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
57286375 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
57286407 ACATGCTTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 86 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:57286420 original size:40 final size:39
Alignment explanation
Indices: 57286293--57286422 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
57286283 ATGCTGGAAA
* * *
57286293 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
57286334 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
57286372 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
57286413 TTATATCCGG
1 TTATATCCGG
57286423 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:57302508 original size:46 final size:46
Alignment explanation
Indices: 57302404--57302625 Score: 193
Period size: 46 Copynumber: 4.8 Consensus size: 46
57302394 GGGGTAGGAT
* *
57302404 GTTGATGCCATGTCCTAGACATGGTCTTACACTAG--CTCAACTCGTA-
1 GTTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCG-AG
* * *
57302450 GTCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAG
1 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * * *
57302496 GTTGATGCATGTCCCAGACATTTCTTACACTAGCTCTCGTCTCAAT
1 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * * *
57302542 GCTGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCGTAAT-GTG
1 GTTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
** *
57302590 GCCGATGCATGTGCCAGACATGTCTTACACTAGCTC
1 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTC
57302626 ACAATAACCC
Statistics
Matches: 146, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 68 0.47
47 28 0.19
48 23 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:57302578 original size:94 final size:92
Alignment explanation
Indices: 57302453--57302625 Score: 240
Period size: 94 Copynumber: 1.9 Consensus size: 92
57302443 ACTCGTAGTC
** **
57302453 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAGGTTGATGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAATGAGGCCGATGCATGTCCCAGACAT
*
57302517 TTCTTACACTAGCTCTCGTCTCAATGCT
65 GTCTTACACTAGCTCTCGTCTCAATGCT
* * *
57302545 GATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCGTAATGTGGCCGATGCATGTGCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
57302610 TGTCTTACACTAGCTC
64 TGTCTTACACTAGCTC
57302626 ACAATAACCC
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 51 0.73
95 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCTCAATGCT
Found at i:57308568 original size:27 final size:27
Alignment explanation
Indices: 57308549--57308705 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
57308539 ATTACCAAAG
*
57308549 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
57308576 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
57308603 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
57308630 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
57308657 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
57308684 TACCCTCGATTTACAGAATTAC
1 TACCCTCGATTTACAGAATTAC
57308706 TAAAATACCA
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:57308594 original size:54 final size:54
Alignment explanation
Indices: 57308536--57308734 Score: 218
Period size: 54 Copynumber: 3.7 Consensus size: 54
57308526 CTCAATTTGT
* *
57308536 AAAATTACCAAAGTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
* *** *
57308590 AAAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
* *** * *
57308644 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
* * * * * * *
57308698 AGAATTACTAAAATACCATTGGTTTACAAAATTACCA
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCA
57308735 AAATACCCCT
Statistics
Matches: 124, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 124 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
Found at i:57308714 original size:27 final size:27
Alignment explanation
Indices: 57308504--57308851 Score: 173
Period size: 27 Copynumber: 12.9 Consensus size: 27
57308494 AATACTTTAG
* * ** *
57308504 TTTACCAAATTACTAAAATGTCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
57308531 TTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ***
57308558 TTTACAGAATTACTATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
57308585 TTTACAAAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ***
57308612 TTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
57308639 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ****
57308666 TTTATAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * * * *
57308693 TTTACAGAATTACTAAAATACCATTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
57308720 TTTACAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
57308746 GTTTGTAAAATTACCAAAATACCACT-GG
1 -TTTACAAAATTACCAAAATACC-CTCGA
*** *** *
57308774 TTTTTGAAATTAGTGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
*
57308801 TTTATAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
57308828 TTTACAAAATTA-CAGAAATACCCT
1 TTTACAAAATTACCA-AAATACCCT
57308852 TGACTTTCTA
Statistics
Matches: 255, Mismatches: 59, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
26 5 0.02
27 249 0.98
28 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:57308724 original size:81 final size:81
Alignment explanation
Indices: 57308538--57308734 Score: 250
Period size: 81 Copynumber: 2.4 Consensus size: 81
57308528 CAATTTGTAA
* * * *
57308538 AATTACCAAAGTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTT
1 AATTACCAAAATACCATCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
*
57308603 TACCCTCGATTTATAG
66 TACCCTCGATTTACAG
*** * * * *
57308619 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 AATTACCAAAATACCATCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
57308684 TACCCTCGATTTACAG
66 TACCCTCGATTTACAG
* * * *
57308700 AATTACTAAAATACCATTGGTTTACAAAATTACCA
1 AATTACCAAAATACCATCGATTTACAGAATTACCA
57308735 AAATACCCCT
Statistics
Matches: 98, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 98 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (81 bp):
AATTACCAAAATACCATCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
TACCCTCGATTTACAG
Found at i:57308742 original size:54 final size:54
Alignment explanation
Indices: 57308684--57308905 Score: 173
Period size: 54 Copynumber: 4.1 Consensus size: 54
57308674 ATTACCGTTT
* * *
57308684 TACCCTCGATTTACAGAATTACTAAAATACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
* ** *** ***
57308738 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTTTGAAATTAGTGAAA
1 TACCCTCGA-TTTACAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
* * * *
57308792 TACCCTCAATTTATAAAATTACCAAAATACCCCTGATTTACAAAATTA-CAGAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCACTGGTTTACAAAATTACCA-AAA
* * * **
57308846 TACCCTTGACTTT-CTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTAC--AAAATTACCA-AAATACCACTGGTTTACAAAATTACCAAAA
57308902 TACC
1 TACC
57308906 TTGGTTTGTA
Statistics
Matches: 130, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
53 2 0.02
54 87 0.67
55 6 0.05
56 35 0.27
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAA
Found at i:57308785 original size:81 final size:82
Alignment explanation
Indices: 57308700--57308905 Score: 206
Period size: 81 Copynumber: 2.5 Consensus size: 82
57308690 CGATTTACAG
**
57308700 AATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA-A
1 AATTA-TAAAATACCATTGGTTTACAAAATTACCAAAATACCCCTGA-TTTACAAAATTA-CAGA
* **
57308763 AATACCAC-TG-GTTT-TTGA
63 AATACC-CTTGACTTTCTAAA
* * *** *
57308781 AATTAGTGAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
1 AATTA-TAAAATACCATTGGTTTACAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
57308846 TACCCTTGACTTTCTAAA
65 TACCCTTGACTTTCTAAA
**
57308864 AATTATAGAAATACCATTGGTTTACAAAATTACTGAAATACC
1 AATTATA-AAATACCATTGGTTTACAAAATTACCAAAATACC
57308906 TTGGTTTGTA
Statistics
Matches: 99, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
80 3 0.03
81 57 0.58
82 5 0.05
83 34 0.34
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (82 bp):
AATTATAAAATACCATTGGTTTACAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAAT
ACCCTTGACTTTCTAAA
Found at i:57308901 original size:27 final size:27
Alignment explanation
Indices: 57308684--57308912 Score: 144
Period size: 27 Copynumber: 8.4 Consensus size: 27
57308674 ATTACCGTTT
* * *
57308684 TACCCTCGATTTACAGAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
57308711 TACCATTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
57308738 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** * *
57308765 TACCAC-TGGTTTTTGAAATTAGTGAAA
1 TACC-CTTGGTTTACAAAATTACTAAAA
*** * *
57308792 TACCCTCAATTTATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
57308819 TACCCCTGATTTACAAAATTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
57308846 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
57308875 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
57308902 TA-CCTTGGTTT
1 TACCCTTGGTTT
57308913 GTAGATTTAC
Statistics
Matches: 159, Mismatches: 34, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
26 10 0.06
27 121 0.76
28 8 0.05
29 20 0.13
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:57309004 original size:27 final size:27
Alignment explanation
Indices: 57308936--57309030 Score: 77
Period size: 27 Copynumber: 3.5 Consensus size: 27
57308926 GACACCCTTG
* * *
57308936 TAGGATAAAATGACTAAAATACCCCTAA
1 TAGGGTAAAATGACCATAATACCCCT-A
* *
57308964 TA-GGAAAAAAGACCATAA-AGCCCCTA
1 TAGGGTAAAATGACCATAATA-CCCCTA
* * *
57308990 TAGGGTAAAGTGACCGTAATACCCCTG
1 TAGGGTAAAATGACCATAATACCCCTA
*
57309017 TATGGTAAAATGAC
1 TAGGGTAAAATGAC
57309031 GAATATGCCG
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
26 4 0.08
27 45 0.87
28 3 0.06
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (27 bp):
TAGGGTAAAATGACCATAATACCCCTA
Found at i:57309910 original size:50 final size:50
Alignment explanation
Indices: 57309833--57309952 Score: 163
Period size: 50 Copynumber: 2.4 Consensus size: 50
57309823 AGGAAGTGCT
57309833 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCA
* * * *
57309883 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGTCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCA
*
57309931 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
57309953 ATATGATAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
48 5 0.08
49 11 0.18
50 46 0.74
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCA
Found at i:57309940 original size:24 final size:25
Alignment explanation
Indices: 57309833--57309927 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
57309823 AGGAAGTGCT
* *
57309833 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
57309858 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
57309883 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
57309908 AAAAGGGCTTTGTCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
57309928 ATTAAAAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:57310199 original size:31 final size:31
Alignment explanation
Indices: 57310147--57310229 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
57310137 TGCTTACAAT
* *
57310147 AAAGGCTTCGG-ACGGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
57310177 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
57310208 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
57310230 TCGAGACTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:57315210 original size:27 final size:27
Alignment explanation
Indices: 57315180--57315526 Score: 291
Period size: 27 Copynumber: 12.8 Consensus size: 27
57315170 GTATGGTGGT
57315180 TTGTAAAATTATCGAAATACCCTCAGA
1 TTGTAAAATTATCGAAATACCCTCAGA
* *
57315207 TTGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTATCGAAATACCCTCAGA
*
57315234 TTGTAAAATTATCGAAATACCC-CCGA
1 TTGTAAAATTATCGAAATACCCTCAGA
57315260 TTTGTAAAATTATCGAAATACCCTC-GA
1 -TTGTAAAATTATCGAAATACCCTCAGA
* * * * *
57315287 TTTATAAAATTACCAAAATACCCTTAGT
1 -TTGTAAAATTATCGAAATACCCTCAGA
* **
57315315 TTGTAAAATTATTGAAATACCCTTGGA
1 TTGTAAAATTATCGAAATACCCTCAGA
* * *
57315342 TTGTAAAATTA-CTAAAATACCCCCAGT
1 TTGTAAAATTATC-GAAATACCCTCAGA
*
57315369 TTGTAAAATTATCGAAACACCCTC-GA
1 TTGTAAAATTATCGAAATACCCTCAGA
* * *
57315395 TTTGTAAAATTATTGAAATGCCCT-TGTA
1 -TTGTAAAATTATCGAAATACCCTCAG-A
* * * * *
57315423 GTGTAAAATTACCAAAAAAACCC-CTGTA
1 TTGTAAAATTATC-GAAATACCCTCAG-A
*
57315451 ATGTAAAATT-TCTGAAATACCCTCA-A
1 TTGTAAAATTATC-GAAATACCCTCAGA
*
57315477 TTTGTAAAATTATCAAAATACCCTC-GA
1 -TTGTAAAATTATCGAAATACCCTCAGA
*
57315504 TTTTTAAAATTA-CTGAAATACCC
1 -TTGTAAAATTATC-GAAATACCC
57315527 CTATATGATA
Statistics
Matches: 261, Mismatches: 44, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
26 5 0.02
27 230 0.88
28 26 0.10
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCTCAGA
Found at i:57317493 original size:28 final size:28
Alignment explanation
Indices: 57317427--57317526 Score: 130
Period size: 27 Copynumber: 3.5 Consensus size: 28
57317417 ATAGTGAGTC
57317427 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
57317454 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
57317482 CGCACACTTAGTGCTGTACAAATCTAAAACC
1 CGCACACTTAGTGCTATA-AAATC--AAACT
57317513 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57317527 AATCTCATGA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 21 0.33
28 20 0.32
29 4 0.06
31 18 0.29
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:57318079 original size:2 final size:2
Alignment explanation
Indices: 57318072--57318102 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
57318062 ATATGCATAC
57318072 AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
57318103 CAACTATACT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57318392 original size:7 final size:7
Alignment explanation
Indices: 57318382--57318406 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
57318372 TCATCACCAC
57318382 AACATCA
1 AACATCA
57318389 AACATCA
1 AACATCA
57318396 AACATCA
1 AACATCA
57318403 AACA
1 AACA
57318407 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:57321949 original size:108 final size:109
Alignment explanation
Indices: 57321813--57322032 Score: 424
Period size: 108 Copynumber: 2.0 Consensus size: 109
57321803 TATATATATG
*
57321813 TATACGTGTCATGATACATATCATTCTCTTTCTGTTTTCTTATAAACACATATCATTTATTTCAT
1 TATACATGTCATGATACATATCATTCTCTTTCTGTTTTCTTATAAACACATATCATTTATTTCAT
57321878 TATATCAATATTTCATATACCATAGTTTCCATGTATTCCACA-A
66 TATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATA
57321921 TATACATGTCATGATACATATCATTCTCTTTCTGTTTTCTTATAAACACATATCATTTATTTCAT
1 TATACATGTCATGATACATATCATTCTCTTTCTGTTTTCTTATAAACACATATCATTTATTTCAT
57321986 TATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATA
66 TATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATA
57322030 TAT
1 TAT
57322033 TTATTTTCCT
Statistics
Matches: 110, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
108 106 0.96
109 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.05, T:0.45
Consensus pattern (109 bp):
TATACATGTCATGATACATATCATTCTCTTTCTGTTTTCTTATAAACACATATCATTTATTTCAT
TATATCAATATTTCATATACCATAGTTTCCATGTATTCCACATA
Found at i:57328160 original size:93 final size:93
Alignment explanation
Indices: 57328048--57328219 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57328038 CGCCCATAAG
* *
57328048 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
57328113 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
57328141 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
57328206 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
57328220 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:57328216 original size:46 final size:46
Alignment explanation
Indices: 57328041--57328216 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
57328031 TGTAACCCGC
* * *
57328041 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
57328087 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
57328137 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57328180 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
57328217 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57346836 original size:47 final size:47
Alignment explanation
Indices: 57346780--57347031 Score: 405
Period size: 47 Copynumber: 5.4 Consensus size: 47
57346770 GTACAAGATA
57346780 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * *
57346827 TATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
57346874 TATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * *
57346921 TGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
57346968 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
57347015 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
57347032 TCCCGAAGGG
Statistics
Matches: 189, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 189 1.00
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
Found at i:57347777 original size:47 final size:47
Alignment explanation
Indices: 57347696--57347815 Score: 168
Period size: 47 Copynumber: 2.6 Consensus size: 47
57347686 GAAAGTATAT
* * *
57347696 ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGACCAAATGGCCAACGTGATGA
* * * *
57347743 ATGTGAAAGTGTATATATGTGATATGGCCAAATGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGACCAAATGGCCAACGTGATGA
*
57347790 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
57347816 TCCCGAAGGG
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGACCAAATGGCCAACGTGATGA
Found at i:57348423 original size:784 final size:784
Alignment explanation
Indices: 57346912--57349273 Score: 4670
Period size: 784 Copynumber: 3.0 Consensus size: 784
57346902 AACGTGATGA
*
57346912 ATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
1 ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
*
57346977 GTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGG
66 GTGATATGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGG
57347042 CATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGAT
131 CATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGAT
57347107 TAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAG
196 TAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAG
57347172 GATTCAAGTAAGACTTTGATATTGAGTATCTGCATTAAGTTACCATCAAATAAGTATTATGTATT
261 GATTCAAGTAAGACTTTGATATTGAGTATCTGCATTAAGTTACCATCAAATAAGTATTATGTATT
57347237 TAAGATGTTCAGGTACGTATTACTTACTCATCGGTGGAGTGATTTCGAGGTGAATTATCAGTATC
326 TAAGATGTTCAGGTACGTATTACTTACTCATCGGTGGAGTGATTTCGAGGTGAATTATCAGTATC
57347302 AAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAATATGAGAATGATCTAATTGGTAATGG
391 AAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAATATGAGAATGATCTAATTGGTAATGG
57347367 TATGTTTGTATAATAAAGTATGCGATGAAATATTCTTATGTATTAGTGCATATTCTGCCCAAAAG
456 TATGTTTGTATAATAAAGTATGCGATGAAATATTCTTATGTATTAGTGCATATTCTGCCCAAAAG
57347432 CCTTATGATTTGAGTATGGGTTGGGTTGAGCTAGATGTGCCAGTACAAGGTAAGGATTATGATTT
521 CCTTATGATTTGAGTATGGGTTGGGTTGAGCTAGATGTGCCAGTACAAGGTAAGGATTATGATTT
57347497 GTAAGCTTACGTATATGTGATAAGGAACATGTTTGGTTCTTTATGTGCCTATGGTAATTTAGTAC
586 GTAAGCTTACGTATATGTGATAAGGAACATGTTTGGTTCTTTATGTGCCTATGGTAATTTAGTAC
57347562 TTGTCATGTTGAAATACTTAAAAGTATGGATGTGATTATGAACAAGTGGAAAGGATTATTGAAAG
651 TTGTCATGTTGAAATACTTAAAAGTATGGATGTGATTATGAACAAGTGGAAAGGATTATTGAAAG
57347627 TTGAAAATTGATGAAGAATGTGCTTTGGAAATATTTGACCATCTAGGTCATTATTATTCGAAAGT
716 TTGAAAATTGATGAAGAATGTGCTTTGGAAATATTTGACCATCTAGGTCATTATTATTCGAAAGT
57347692 ATAT
781 ATAT
57347696 ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
1 ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
*
57347761 GTGATATGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGG
66 GTGATATGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGG
57347826 CATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGAT
131 CATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGAT
57347891 TAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAG
196 TAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAG
57347956 GATTCAAGTAAGACTTTGATATTGAGTATCTGCATTAAGTTACCATCAAATAAGTATTATGTATT
261 GATTCAAGTAAGACTTTGATATTGAGTATCTGCATTAAGTTACCATCAAATAAGTATTATGTATT
57348021 TAAGATGTTCAGGTACGTATTACTTACTCATCGGTGGAGTGATTTCGAGGTGAATTATCAGTATC
326 TAAGATGTTCAGGTACGTATTACTTACTCATCGGTGGAGTGATTTCGAGGTGAATTATCAGTATC
*
57348086 GAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAATATGAGAATGATCTAATTGGTAATGG
391 AAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAATATGAGAATGATCTAATTGGTAATGG
57348151 TATGTTTGTATAATAAAGTATGCGATGAAATATTCTTATGTATTAGTGCATATTCTGCCCAAAAG
456 TATGTTTGTATAATAAAGTATGCGATGAAATATTCTTATGTATTAGTGCATATTCTGCCCAAAAG
57348216 CCTTATGATTTGAGTATGGGTTGGGTTGAGCTAGATGTGCCAGTACAAGGTAAGGATTATGATTT
521 CCTTATGATTTGAGTATGGGTTGGGTTGAGCTAGATGTGCCAGTACAAGGTAAGGATTATGATTT
57348281 GTAAGCTTACGTATATGTGATAAGGAACATGTTTGGTTCTTTATGTGCCTATGGTAATTTAGTAC
586 GTAAGCTTACGTATATGTGATAAGGAACATGTTTGGTTCTTTATGTGCCTATGGTAATTTAGTAC
57348346 TTGTCATGTTGAAATACTTAAAAGTATGGATGTGATTATGAACAAGTGGAAAGGATTATTGAAAG
651 TTGTCATGTTGAAATACTTAAAAGTATGGATGTGATTATGAACAAGTGGAAAGGATTATTGAAAG
57348411 TTGAAAATTGATGAAGAATGTGCTTTGGAAATATTTGACCATCTAGGTCATTATTATTCGAAAGT
716 TTGAAAATTGATGAAGAATGTGCTTTGGAAATATTTGACCATCTAGGTCATTATTATTCGAAAGT
57348476 ATAT
781 ATAT
57348480 ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
1 ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
*
57348545 GTGATATGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGGTAAGTCCCGAAGGG
66 GTGATATGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGG
57348610 CATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGAT
131 CATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGAT
57348675 TAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAG
196 TAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAG
57348740 GATTCAAGTAAGACTTTGATATTGAGTATCTGCATTAAGTTACCATCAAATAAGTATTATGTATT
261 GATTCAAGTAAGACTTTGATATTGAGTATCTGCATTAAGTTACCATCAAATAAGTATTATGTATT
57348805 TAAGATGTTCAGGTACGTATTACTTACTCATCGGTGGAGTGATTTCGAGGTGAATTATCAGTATC
326 TAAGATGTTCAGGTACGTATTACTTACTCATCGGTGGAGTGATTTCGAGGTGAATTATCAGTATC
57348870 AAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAATATGAGAATGATCTAATTGGTAATGG
391 AAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAATATGAGAATGATCTAATTGGTAATGG
57348935 TATGTTTGTATAATAAAGTATGCGATGAAATATTCTTATGTATTAGTGCATATTCTGCCCAAAAG
456 TATGTTTGTATAATAAAGTATGCGATGAAATATTCTTATGTATTAGTGCATATTCTGCCCAAAAG
*
57349000 CCTTATGATTTGAGTATGGGTTAGGTTGAGCTAGATGTGCCAGTACAAGGTAAGGATTATGATTT
521 CCTTATGATTTGAGTATGGGTTGGGTTGAGCTAGATGTGCCAGTACAAGGTAAGGATTATGATTT
57349065 GTAAGCTTACGTATATGTGATAAGGAACATGTTTGGTTCTTTATGTGCCTATGGTAATTTAGTAC
586 GTAAGCTTACGTATATGTGATAAGGAACATGTTTGGTTCTTTATGTGCCTATGGTAATTTAGTAC
57349130 TTGTCATGTTGAAATACTTAAAAGTATGGATGTGATTATGAACAAGTGGAAAGGATTATTGAAAG
651 TTGTCATGTTGAAATACTTAAAAGTATGGATGTGATTATGAACAAGTGGAAAGGATTATTGAAAG
57349195 TTGAAAATTGATGAAGAATGTGCTTTGGAAATATTTGACCATCTAGGTCATTATTATTCGAAAGT
716 TTGAAAATTGATGAAGAATGTGCTTTGGAAATATTTGACCATCTAGGTCATTATTATTCGAAAGT
57349260 ATAT
781 ATAT
57349264 ATGTAAAAGT
1 ATGTAAAAGT
57349274 CAAGTGTTGC
Statistics
Matches: 1570, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
784 1570 1.00
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (784 bp):
ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
GTGATATGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCCGAAGGG
CATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGAT
TAATGTCCGTAGGCTTCGTGCTCGTACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAG
GATTCAAGTAAGACTTTGATATTGAGTATCTGCATTAAGTTACCATCAAATAAGTATTATGTATT
TAAGATGTTCAGGTACGTATTACTTACTCATCGGTGGAGTGATTTCGAGGTGAATTATCAGTATC
AAAGAGGTAGGTAAATGTGATTAATATTATAACTCCAAATATGAGAATGATCTAATTGGTAATGG
TATGTTTGTATAATAAAGTATGCGATGAAATATTCTTATGTATTAGTGCATATTCTGCCCAAAAG
CCTTATGATTTGAGTATGGGTTGGGTTGAGCTAGATGTGCCAGTACAAGGTAAGGATTATGATTT
GTAAGCTTACGTATATGTGATAAGGAACATGTTTGGTTCTTTATGTGCCTATGGTAATTTAGTAC
TTGTCATGTTGAAATACTTAAAAGTATGGATGTGATTATGAACAAGTGGAAAGGATTATTGAAAG
TTGAAAATTGATGAAGAATGTGCTTTGGAAATATTTGACCATCTAGGTCATTATTATTCGAAAGT
ATAT
Found at i:57348561 original size:47 final size:47
Alignment explanation
Indices: 57348480--57348599 Score: 159
Period size: 47 Copynumber: 2.6 Consensus size: 47
57348470 GAAAGTATAT
* * *
57348480 ATGTAAAAGTGTATATATGAGATAAGACCTAATGGCCAACGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAACGTGATGA
* * * *
57348527 ATGTGAAAGTGTATATATGTGATATGGCCGAATGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAACGTGATGA
* *
57348574 ATGTGAAAGTGTATAAATGTGGTAAG
1 ATGTGAAAGTGTATATATGTGATAAG
57348600 TCCCGAAGGG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAACGTGATGA
Found at i:57358554 original size:78 final size:81
Alignment explanation
Indices: 57358419--57358600 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 81
57358409 TCGAATGATG
* *
57358419 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
57358483 TGTGCGAG-TACTA-A
66 TGTGCGAGTTACTATA
* * **
57358497 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
57358559 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
57358577 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57358601 TGAATGAGTA
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.50
79 31 0.34
80 13 0.14
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:57358560 original size:40 final size:40
Alignment explanation
Indices: 57358419--57358602 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
57358409 TCGAATGATG
* * *
57358419 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
57358459 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57358498 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57358537 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57358578 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57358603 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 18 0.14
39 30 0.24
40 68 0.54
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57367195 original size:40 final size:40
Alignment explanation
Indices: 57367151--57367317 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
57367141 CGGAATATAA
57367151 CCGGATATAATCACGT-GCACAAATGCCTTTC-GGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCC-TTCGGGTCTTAGC
* * * * *
57367191 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
57367231 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
57367271 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57367310 CCGGATAT
1 CCGGATAT
57367318 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 17 0.16
40 87 0.84
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.