Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 201 of 770
Found at i:60150779 original size:46 final size:46
Alignment explanation
Indices: 60150633--60150843 Score: 196
Period size: 46 Copynumber: 4.5 Consensus size: 46
60150623 CACTTGTGTA
* * *
60150633 AGCTAGTGTAAGGCATGTCTGGGACATGCATCGGCCAC-ATTATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAG
* * * * * *
60150679 AGCCAGAGTAAGAGCATGTCTGAGACATGGCATCAGCATTGAGATGAG
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAG
* * *
60150727 GGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AG
* *
60150773 AGCTAGTGTAAGACATGTCTGGGACATGCATC-GACTACGAGATGAT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAG
*
60150819 AG-TCAGTGTAAGACCATGTCAGGGA
1 AGCT-AGTGTAAGA-CATGTCTGGGA
60150844 AAAGGCATCG
Statistics
Matches: 134, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
45 5 0.04
46 70 0.52
47 36 0.27
48 22 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAG
Found at i:60152067 original size:21 final size:22
Alignment explanation
Indices: 60152028--60152068 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
60152018 TTGGAATGCT
60152028 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
60152050 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
60152069 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:60169064 original size:46 final size:47
Alignment explanation
Indices: 60168969--60169091 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 47
60168959 TATCTGTGCT
* *
60168969 GATGCCATGTCCCAAACATGGTCTTACACTG-ACACATCTCATAGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGCACTCATCTCATAGCC
60169015 GATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCATCTCA-ATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACT-GCACTCATCTCATA-GCC
*
60169061 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAAACATGGTCTTACACTG
60169092 GCTCTCATAA
Statistics
Matches: 69, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
44 10 0.14
45 16 0.23
46 19 0.28
47 14 0.20
48 10 0.14
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (47 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGCACTCATCTCATAGCC
Found at i:60173631 original size:47 final size:47
Alignment explanation
Indices: 60173516--60173642 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 47
60173506 GATGTGTTAG
* * * *
60173516 TGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GACTCGA-TTCAATAGCCAA
* * **
60173565 TGTAAGACCATGTCCGGGACATGGCATCGACTTGA-TGGATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTCGATTCAAT-AGCCAA
*
60173612 TGTAAGACCATGTCTGGGACATGTCATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
60173643 ATTATACCAT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 3 0.04
47 33 0.49
48 5 0.07
49 26 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTCGATTCAATAGCCAA
Found at i:60180130 original size:28 final size:28
Alignment explanation
Indices: 60180090--60180188 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
60180080 GTAATAAGCC
*
60180090 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
60180118 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* ** * * *
60180146 TGCACACTTAGTGCTATACCATTTGAACC
1 CGCACACTTAGTGCT-TAATAATCGAACT
60180175 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60180189 CAATTTGTGA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.62
29 18 0.31
30 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:60184021 original size:46 final size:46
Alignment explanation
Indices: 60183921--60184084 Score: 149
Period size: 46 Copynumber: 3.5 Consensus size: 46
60183911 TATTGTGAGA
* *
60183921 TAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGA--CAAGTGC
1 TAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTTGAGATGTAA--GC
*
60183969 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAAGC
* * * * ** *
60184015 CAGTGTAAGATATGTATGAGACATGCATTAG-CTATGAGATGT--GT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGAGATGTAAGC
60184059 TAGTGTAAGAACATGTCTGGGACATG
1 TAGTGTAAG-ACATGTCTGGGACATG
60184085 GCGTTTGCCT
Statistics
Matches: 97, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
44 9 0.09
45 15 0.15
46 46 0.47
47 15 0.15
48 12 0.12
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAAGC
Found at i:60186800 original size:21 final size:21
Alignment explanation
Indices: 60186776--60186815 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
60186766 TGTTTCATGG
*
60186776 AAAAATTTCCTAAGTTTTCCT
1 AAAAATTTCCGAAGTTTTCCT
* *
60186797 AAAACTTTTCGAAGTTTTC
1 AAAAATTTCCGAAGTTTTC
60186816 AGTTTAGTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.42
Consensus pattern (21 bp):
AAAAATTTCCGAAGTTTTCCT
Found at i:60188599 original size:48 final size:48
Alignment explanation
Indices: 60188538--60188755 Score: 217
Period size: 48 Copynumber: 4.5 Consensus size: 48
60188528 CATTAAGGGA
* * *
60188538 TACAATGATTTGGCTTTAGGCCATGATATCGGTACTTCGGGTGCGAGT
1 TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGGTGCGAGT
* * ** *
60188586 TACTTTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGA
1 TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGGTGCGAGT
* *
60188634 TACATTGGTTTGGCTTCAGGCCATGATATCGGCACTTCAGGAT-CGAGCT
1 TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTC-GGGTGCGAG-T
* * *** *
60188683 T-CATTGATTTGGCTACGGGCCATGATATTATCACTTCGGGTGCGAGA
1 TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGGTGCGAGT
* * *
60188730 TATATTGAGTTGGATTC-GTGCCATGA
1 TACATTGATTTGGCTTCAG-GCCATGA
60188756 GTTTAGCACT
Statistics
Matches: 138, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
47 5 0.04
48 129 0.93
49 4 0.03
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (48 bp):
TACATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGGTGCGAGT
Found at i:60188702 original size:96 final size:96
Alignment explanation
Indices: 60188536--60188755 Score: 293
Period size: 96 Copynumber: 2.3 Consensus size: 96
60188526 GTCATTAAGG
* * * * *
60188536 GATACAATGATTTGGCTTTAGGCCATGATATCGGTACTTCGGGTGCGAGTTACTTTGATTTGGCT
1 GATACATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGATGCGAGTTACATTGATTTGGCT
*
60188601 TCGGGCCATGATATTAGCACTTCGGGTGCGA
66 ACGGGCCATGATATTAGCACTTCGGGTGCGA
*
60188632 GATACATTGGTTTGGCTTCAGGCCATGATATCGGCACTTCAGGAT-CGAGCTT-CATTGATTTGG
1 GATACATTGATTTGGCTTCAGGCCATGATATCGGCACTTC-GGATGCGAG-TTACATTGATTTGG
*
60188695 CTACGGGCCATGATATTATCACTTCGGGTGCGA
64 CTACGGGCCATGATATTAGCACTTCGGGTGCGA
* * *
60188728 GATATATTGAGTTGGATTC-GTGCCATGA
1 GATACATTGATTTGGCTTCAG-GCCATGA
60188756 GTTTAGCACT
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
95 1 0.01
96 103 0.94
97 5 0.05
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (96 bp):
GATACATTGATTTGGCTTCAGGCCATGATATCGGCACTTCGGATGCGAGTTACATTGATTTGGCT
ACGGGCCATGATATTAGCACTTCGGGTGCGA
Found at i:60196360 original size:23 final size:22
Alignment explanation
Indices: 60196321--60196363 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
60196311 TTACCACATG
* *
60196321 CATAATATTATATTCTAAATCT
1 CATAATATTAAAATCTAAATCT
60196343 CATAATGATTAAAATCTAAAT
1 CATAAT-ATTAAAATCTAAAT
60196364 ATTTTAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.40
Consensus pattern (22 bp):
CATAATATTAAAATCTAAATCT
Found at i:60201219 original size:39 final size:40
Alignment explanation
Indices: 60201165--60201338 Score: 176
Period size: 40 Copynumber: 4.4 Consensus size: 40
60201155 AAACCAAGTA
* * * * *
60201165 CCTTCGGAATTTAGCCAGATATAACT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCAGATATAAGTAACTCGCACAAATG
* *
60201204 CCTTCGGGACTTAGCCTGGT-TATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCAGATATA-AGTAACTCGCACAAATG
* *
60201244 CCTTCGGGACTTAGCCCGGATAT-AGTAGCTCGCACAAATG
1 CCTTCGGGACTTAG-CCAGATATAAGTAACTCGCACAAATG
* * * * *
60201284 CCTTCGGG-CTTAGCCCGAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCAGATATAAGTAACTCGCACAAATG
60201323 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
60201339 CGGTTATCAT
Statistics
Matches: 114, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
38 8 0.07
39 45 0.39
40 56 0.49
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCAGATATAAGTAACTCGCACAAATG
Found at i:60201249 original size:40 final size:40
Alignment explanation
Indices: 60201198--60201341 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
60201188 ACTACTTGCT
* *
60201198 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
60201238 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
60201278 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
60201317 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
60201342 TTATCATCCA
Statistics
Matches: 94, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
38 3 0.03
39 31 0.33
40 59 0.63
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:60204150 original size:43 final size:42
Alignment explanation
Indices: 60204103--60204198 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
60204093 TCCTAGACGT
* * *
60204103 GGTCTTACATGTAATTAAACATCGATGCCACTGTCCCAAACAG
1 GGTCTTACATGAAATCAAACA-CGATGCCAATGTCCCAAACAG
* * * * *
60204146 GGTCTTACATGAAATCATATACGATTCCAATGTCCCAGACAT
1 GGTCTTACATGAAATCAAACACGATGCCAATGTCCCAAACAG
60204188 GGTCTTACATG
1 GGTCTTACATG
60204199 CAAAAAATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 28 0.62
43 17 0.38
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAACACGATGCCAATGTCCCAAACAG
Found at i:60204192 original size:42 final size:43
Alignment explanation
Indices: 60204084--60204198 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
60204074 AGTAAATACA
* * * * *
60204084 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATTAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATCG
* * * * *
60204127 ATGCCACTGTCCCAAACAGGGTCTTACATGAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATCG
*
60204169 ATTCCAATGTCCCAGACATGGTCTTACATG
1 ATGCCAATGTCCCAGACATGGTCTTACATG
60204199 CAAAAAATAT
Statistics
Matches: 58, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
42 28 0.48
43 30 0.52
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATCG
Found at i:60214070 original size:43 final size:43
Alignment explanation
Indices: 60214022--60214104 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
60214012 CTACAAGCGA
** *
60214022 CGTTTGTAGGAAAAGTGCCGGTAAAGATCATGTTCTATAGCAG
1 CGTTTGTAGGAAAAGCACCAGTAAAGATCATGTTCTATAGCAG
*
60214065 CGTTTGTATGAAAAGCACCAGTAAAGATCATGTTCTATAG
1 CGTTTGTAGGAAAAGCACCAGTAAAGATCATGTTCTATAG
60214105 TGGCATTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (43 bp):
CGTTTGTAGGAAAAGCACCAGTAAAGATCATGTTCTATAGCAG
Found at i:60214354 original size:18 final size:17
Alignment explanation
Indices: 60214327--60214360 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
60214317 GAATTTTTTG
*
60214327 TAAAATATATGAAATATT
1 TAAAAAATAT-AAATATT
60214345 TAAAAAATATAAATAT
1 TAAAAAATATAAATAT
60214361 AAAAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
TAAAAAATATAAATATT
Found at i:60216806 original size:25 final size:25
Alignment explanation
Indices: 60216732--60216809 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
60216722 CTCGGCCCTG
60216732 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
** *
60216757 TCACAT-T-GGCTA--TTCAGCCTT-A
1 TCACATATATAC-ACCTTCA-CATTCA
60216779 TCACATATATACACCTTCACATTCA
1 TCACATATATACACCTTCACATTCA
60216804 TCACAT
1 TCACAT
60216810 CTGCCATTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 17 0.43
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
TCACATATATACACCTTCACATTCA
Found at i:60216855 original size:49 final size:47
Alignment explanation
Indices: 60216681--60217093 Score: 582
Period size: 47 Copynumber: 8.7 Consensus size: 47
60216671 CCCTTCGGGA
* * * * * *
60216681 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* * *
60216728 CCTGTCACATATATACACCTTCACATTCATCACATTGGCTATTCA-GC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATT-AGGC
60216775 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
60216822 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
60216871 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
60216920 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
60216967 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATT-AGGC
*
60217016 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
60217063 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
60217094 GCGTAAAATC
Statistics
Matches: 332, Mismatches: 20, Indels: 28
0.87 0.05 0.07
Matches are distributed among these distances:
46 3 0.01
47 193 0.58
48 4 0.01
49 130 0.39
50 2 0.01
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:60216878 original size:96 final size:94
Alignment explanation
Indices: 60216681--60217093 Score: 616
Period size: 96 Copynumber: 4.3 Consensus size: 94
60216671 CCCTTCGGGA
* * * * * * * *
60216681 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACAC
* *
60216746 CTTCACATTCATCACATTGGCTATTCA-GC
66 CTTCACATTCATCACATCGGCCATT-AGGC
60216775 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATT-AGGCCTTATCACATATATAT
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTCA-GCCTTATCAC--ATATAT
*
60216838 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACCTTCACATTCATCACATCGGCCATTAGGC
60216871 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATAC
60216936 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
60216967 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATAC
60217032 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
*
60217063 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
60217094 GCGTAAAATC
Statistics
Matches: 297, Mismatches: 13, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
94 56 0.19
95 2 0.01
96 204 0.69
97 2 0.01
98 32 0.11
99 1 0.00
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:60220895 original size:43 final size:43
Alignment explanation
Indices: 60220834--60221097 Score: 465
Period size: 43 Copynumber: 6.1 Consensus size: 43
60220824 CCTTGCTCGA
** * *
60220834 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
60220877 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
60220920 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
60220963 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
60221006 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
60221049 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
60221092 ATCACC
1 ATCACC
60221098 AGCATGACTG
Statistics
Matches: 214, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 214 1.00
ACGTcount: A:0.32, C:0.33, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:60221136 original size:40 final size:40
Alignment explanation
Indices: 60221092--60221294 Score: 140
Period size: 40 Copynumber: 5.1 Consensus size: 40
60221082 CCGAATACAT
* * * *
60221092 ATCACCAGCATGACTGCTCTTCGGAACCTGGTCCGGATAC
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
* ** *
60221132 ATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATAT
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
* ** **
60221172 ATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATGT
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
* * * * * * * *
60221212 AACACCAGCACG-ATGCTCTACGGGACTTAACCCGGATATAT
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGG--ATAC
* * * * *
60221253 ATCGCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-C
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
60221292 ATC
1 ATC
60221295 GTCGAGACCT
Statistics
Matches: 139, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 23 0.17
40 82 0.59
41 13 0.09
42 21 0.15
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
Found at i:60228643 original size:40 final size:39
Alignment explanation
Indices: 60228599--60228724 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
60228589 GGGACTCAAC
*
60228599 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
60228639 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
60228679 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
60228719 CCGGAT
1 CCGGAT
60228725 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:60228683 original size:80 final size:80
Alignment explanation
Indices: 60228538--60228724 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
60228528 GCTACACATT
* * *
60228538 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
60228602 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
60228618 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
60228681 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
60228699 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
60228725 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:60230763 original size:25 final size:25
Alignment explanation
Indices: 60230731--60230820 Score: 153
Period size: 25 Copynumber: 3.6 Consensus size: 25
60230721 TTTTAATAAC
* *
60230731 GGGCAAAGCCCTTTTTGATAAACTG
1 GGGCAAAGCCCTTTTCGGTAAACTG
60230756 GGGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTCGGTAAACTG
*
60230781 GCGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTCGGTAAACTG
60230806 GGGCAAAGCCCTTTT
1 GGGCAAAGCCCTTTT
60230821 AGCACTTCCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGGTAAACTG
Found at i:60231057 original size:27 final size:27
Alignment explanation
Indices: 60231027--60231194 Score: 171
Period size: 27 Copynumber: 6.3 Consensus size: 27
60231017 GGCAAAATGG
* *
60231027 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCTACAAGGGTATTTCGA
* * *
60231054 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTTTACCCTACAAGGGTATTTCGA
* *
60231080 GTAATTTTACCTTACAAGGGTATTTCGG
1 -TAATTTTACCCTACAAGGGTATTTCGA
* *
60231108 TAATTCTACCCTACAGGGGTA-TTC-A
1 TAATTTTACCCTACAAGGGTATTTCGA
* *
60231133 GTAATTTTACCTTACAAGGGTATTTCGG
1 -TAATTTTACCCTACAAGGGTATTTCGA
* * *
60231161 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTTTACCCTACAAGGGTATTTCGA
60231188 TAATTTT
1 TAATTTT
60231195 GTAAATCGAG
Statistics
Matches: 112, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
26 22 0.20
27 90 0.80
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATTTCGA
Found at i:60231156 original size:53 final size:54
Alignment explanation
Indices: 60231026--60231194 Score: 277
Period size: 54 Copynumber: 3.1 Consensus size: 54
60231016 GGGCAAAATG
** * * *
60231026 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTTTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
60231080 GTAATTTTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTCA
1 GTAATTTTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
60231133 GTAATTTTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
60231187 ATAATTTT
1 GTAATTTT
60231195 GTAAATCGAG
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 52 0.48
54 56 0.52
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (54 bp):
GTAATTTTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:60231207 original size:27 final size:27
Alignment explanation
Indices: 60231177--60231625 Score: 189
Period size: 27 Copynumber: 16.6 Consensus size: 27
60231167 TACCCTACAG
* *
60231177 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*** * * * *
60231204 GGGTGAAAACGGTAATTCTATAAATTGG
1 GGGT-ATTTCAGTAATTTTATAAATCGA
*
60231232 GGGTACTTT-GGTAATTTT-TACAAGTCGA
1 GGGTA-TTTCAGTAATTTTATA-AA-TCGA
*
60231260 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
** * *
60231287 GGGTATTTCAGTAATTTTGCAAAACTA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * * * * * *
60231314 GGGTATGTCGGTAGTTTCACAACT-AA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
60231340 GGGTATTT-GGTAATTTTACAAA-CTA
1 GGGTATTTCAGTAATTTTATAAATCGA
** * * *
60231365 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTCAGTAATTTTATAAATCGA
** * *
60231393 GGGTATTTTGGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
60231420 GGGTATTTCAGTAATTTCACAAATCAA
1 GGGTATTTCAGTAATTTTATAAATCGA
** * *
60231447 GGGTATTTTGGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * * *
60231474 GGGTATTTTAGTAATTTCACAAAT-TA
1 GGGTATTTCAGTAATTTTATAAATCGA
** * * *
60231500 GGGGTATTTTGGTAATTTCACAAA-CTA
1 -GGGTATTTCAGTAATTTTATAAATCGA
* *
60231527 GGGGTATTTTC-GTAATTTTACAAA-CCA
1 -GGGTA-TTTCAGTAATTTTATAAATCGA
** * *
60231554 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTCAGTAATTTTATAAATCGA
* * *
60231581 GGGGTATTTTAGTAATTTTACAAATTGA
1 -GGGTATTTCAGTAATTTTATAAATCGA
* *
60231609 GGGCATTTTAGTAATTT
1 GGGTATTTCAGTAATTT
60231626 GGTAAACAGA
Statistics
Matches: 343, Mismatches: 64, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
25 12 0.03
26 22 0.06
27 267 0.78
28 41 0.12
29 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAATCGA
Found at i:60231408 original size:54 final size:54
Alignment explanation
Indices: 60231232--60231604 Score: 362
Period size: 54 Copynumber: 6.9 Consensus size: 54
60231222 TATAAATTGG
* * * * * *
60231232 GGGTACTTTGGTAATTTTTAC-AAGTCGAGGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAA-TTTTACAAACTAG-GGGTATTTTAGTAATTTTACAAACCAA
** * * ** * * *
60231287 GGGTATTTCAGTAATTTTGCAAAACTA-GGGTATGTCGGTAGTTTCAC-AACTAA
1 GGGTATTTTGGTAATTTTAC-AAACTAGGGGTATTTTAGTAATTTTACAAACCAA
* **
60231340 GGGTA-TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAA
* * * * *
60231393 GGGTATTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTTACAAACCAA
* * * ** *
60231447 GGGTATTTTGGTAATTTTAC-AAGTCGAGGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTTACAAACCAA
* * *
60231501 GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTCGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAA
*
60231555 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAA
60231605 TTGAGGGCAT
Statistics
Matches: 267, Mismatches: 44, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
51 6 0.02
52 25 0.09
53 22 0.08
54 196 0.73
55 15 0.06
56 3 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAA
Found at i:60231452 original size:81 final size:81
Alignment explanation
Indices: 60231232--60231625 Score: 359
Period size: 81 Copynumber: 4.9 Consensus size: 81
60231222 TATAAATTGG
* * *
60231232 GGGTACTTTGGTAATTTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCA
1 GGGTATTTTGGTAA-TTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
* *
60231297 GTAATTTTGCAAAACTA
65 GTAATTTTGCAAACCAA
* * * * * * * * *
60231314 GGGTATGTCGGTAGTTTCACAACT-AAGGGTATTT-GGTAATTTTACAAA-CTAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATC-AAGGGTATTTTA
*
60231376 GTAATTTTGTAAACCAA
65 GTAATTTTGCAAACCAA
* *
60231393 GGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTAG
* ** *
60231458 TAATTTTACAAGTCGA
66 TAATTTTGCAAACCAA
* * * * ** * *
60231474 GGGTATTTTAGTAATTTCACAAAT-TAGGGGTATTTTGGTAATTTCACAAA-CTAGGGGTATTTT
1 GGGTATTTTGGTAATTTTACAAGTCGA-GGGTATTTCAGTAATTTTACAAATC-AAGGGTATTTT
* * *
60231537 CGTAATTTTACAAACCAG
64 AGTAATTTTGCAAACCAA
* * * ** *
60231555 GGGTATTTTGGTAATTTTACAA-ACCAGGGGTATTTTAGTAATTTTACAAATTGAGGGCATTTTA
1 GGGTATTTTGGTAATTTTACAAGTCGA-GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
60231619 GTAATTT
65 GTAATTT
60231626 GGTAAACAGA
Statistics
Matches: 252, Mismatches: 52, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
78 1 0.00
79 54 0.21
80 20 0.08
81 166 0.66
82 11 0.04
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTAG
TAATTTTGCAAACCAA
Found at i:60236197 original size:46 final size:46
Alignment explanation
Indices: 60236141--60236316 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
60236131 TGGTTGAGCA
* *
60236141 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
60236187 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
60236232 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60236280 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
60236317 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 28 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60236297 original size:93 final size:93
Alignment explanation
Indices: 60236138--60236309 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
60236128 ATATGGTTGA
* * * * * *
60236138 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
60236203 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
60236231 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
60236296 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60236310 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60251686 original size:47 final size:47
Alignment explanation
Indices: 60251622--60251738 Score: 130
Period size: 47 Copynumber: 2.5 Consensus size: 47
60251612 GAATTGACGG
**
60251622 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGGCATTGA
1 TTAAGGATACCATGTAAGACCACATCAAGACATGGCATCGGCATTGA
** *
60251669 TTAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCATTAAGA
1 TTAAGGA-TACCATGTAAGACCACATCAAGACATGGCATCGGCATT--GA
* *
60251718 -CAAGGATACCATGTAAAACCA
1 TTAAGGATACCATGTAAGACCA
60251739 TGTTTGGAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
47 39 0.66
48 18 0.31
49 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (47 bp):
TTAAGGATACCATGTAAGACCACATCAAGACATGGCATCGGCATTGA
Found at i:60251891 original size:55 final size:54
Alignment explanation
Indices: 60251766--60251947 Score: 251
Period size: 55 Copynumber: 3.4 Consensus size: 54
60251756 TTGGTAAGAT
* * *
60251766 AAGGATATCATGTTAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
60251820 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* *
60251875 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
60251928 AAGGATACCATGTAAGACCA
1 AAGGATACCATGTAAGACCA
60251948 CATGACAATG
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
52 4 0.04
53 21 0.19
54 41 0.36
55 43 0.38
56 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:60253938 original size:39 final size:39
Alignment explanation
Indices: 60253893--60253971 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
60253883 AACTCGTCAA
*
60253893 CAAATCGCTTGCACATATCTTTTTGGTAGAAACATACTC
1 CAAATCGCTTGCACATATCTCTTTGGTAGAAACATACTC
60253932 CAAATCGCTTGCACATATCTCTTTGGTAGAAACATACTC
1 CAAATCGCTTGCACATATCTCTTTGGTAGAAACATACTC
60253971 C
1 C
60253972 CGAGTACTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (39 bp):
CAAATCGCTTGCACATATCTCTTTGGTAGAAACATACTC
Found at i:60256229 original size:62 final size:62
Alignment explanation
Indices: 60256128--60256254 Score: 157
Period size: 62 Copynumber: 2.0 Consensus size: 62
60256118 TTCAAACAAC
* * **
60256128 TTTGTAACACCCCAAACCCGGCCTAGATATTAGGCCCGAATCTGGCATGTCACATTGAAGTG
1 TTTGTAACACCCCAAACCCGGCCTAGACACTAGGCCCGAATCTGGCATGTCACATCAAAGTG
* * * * *
60256190 TTTGTAACACCCCAAGCCTGGCCTAGACGCTATGG-CCGAATCTGGCGTGTTACATCAAAGTG
1 TTTGTAACACCCCAAACCCGGCCTAGACACTA-GGCCCGAATCTGGCATGTCACATCAAAGTG
60256252 TTT
1 TTT
60256255 TTTGAAAATT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 53 0.96
63 2 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (62 bp):
TTTGTAACACCCCAAACCCGGCCTAGACACTAGGCCCGAATCTGGCATGTCACATCAAAGTG
Found at i:60256756 original size:34 final size:33
Alignment explanation
Indices: 60256713--60256807 Score: 118
Period size: 33 Copynumber: 2.8 Consensus size: 33
60256703 TGCAGTAACG
* * *
60256713 GTCTGGGCCTGAGCCTTATTCAGTAATCACTACA
1 GTCTGGGCCTTAGCCCTATACAGTAA-CACTACA
* * *
60256747 GTCTGGGCCTTCGCCCTATACAGCAACAGTACA
1 GTCTGGGCCTTAGCCCTATACAGTAACACTACA
*
60256780 ATCTGGGCCTTAGCCCTATACAGTAACA
1 GTCTGGGCCTTAGCCCTATACAGTAACA
60256808 GTGTAATGCA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
33 31 0.60
34 21 0.40
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (33 bp):
GTCTGGGCCTTAGCCCTATACAGTAACACTACA
Found at i:60258554 original size:22 final size:22
Alignment explanation
Indices: 60258526--60258569 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
60258516 GAGGGAAAGA
60258526 AAGACTAATGTAGTTCGACTAT
1 AAGACTAATGTAGTTCGACTAT
60258548 AAGACTAATGTAGTTCGACTAT
1 AAGACTAATGTAGTTCGACTAT
60258570 GGTTGTGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (22 bp):
AAGACTAATGTAGTTCGACTAT
Found at i:60261954 original size:17 final size:19
Alignment explanation
Indices: 60261909--60261948 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
60261899 ATGAAATTTT
60261909 AATTAGTATTATGAGATAA
1 AATTAGTATTATGAGATAA
*
60261928 AATTAGTATTATTAGA-AA
1 AATTAGTATTATGAGATAA
60261946 AAT
1 AAT
60261949 ATTATTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (19 bp):
AATTAGTATTATGAGATAA
Found at i:60286778 original size:46 final size:46
Alignment explanation
Indices: 60286615--60286787 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
60286605 ATTTGGGCAT
*
60286615 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
60286659 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
60286704 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
60286752 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60286788 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:60289757 original size:15 final size:15
Alignment explanation
Indices: 60289737--60289805 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
60289727 GTATCTTGGG
60289737 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
60289752 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
60289767 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
60289782 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
60289797 TTTCTTTAT
1 TTTCTTTAT
60289806 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:60289806 original size:30 final size:30
Alignment explanation
Indices: 60289728--60289815 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
60289718 CATAGTATCG
* * * *
60289728 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
60289758 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
60289788 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
60289816 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:60293665 original size:41 final size:41
Alignment explanation
Indices: 60293588--60293714 Score: 193
Period size: 41 Copynumber: 3.1 Consensus size: 41
60293578 TTAAAAAATT
* * *
60293588 AAACCCTAAACCTTAATTTA-TTTTTACTTAAACCCTAAAT
1 AAACCTTAAACCTTAATTTATTTTTTTCTTAAACCCTAAAC
* *
60293628 AAACCTTAAACCTTAATTTATTTTTTTCTTGAACCCTAGAC
1 AAACCTTAAACCTTAATTTATTTTTTTCTTAAACCCTAAAC
*
60293669 AAACCTTAAACCCTAATTTATTTTTTTCTTAAACCCTAAAC
1 AAACCTTAAACCTTAATTTATTTTTTTCTTAAACCCTAAAC
60293710 AAACC
1 AAACC
60293715 CTAACCCTAA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 19 0.24
41 59 0.76
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.38
Consensus pattern (41 bp):
AAACCTTAAACCTTAATTTATTTTTTTCTTAAACCCTAAAC
Found at i:60295325 original size:40 final size:40
Alignment explanation
Indices: 60295202--60295341 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
60295192 TATTCGAATG
*
60295202 ATATCCGGGCTAAGTCCCGAAGGC-TCTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAT-TTGTGCTA-GTGACT
* * * ** *
60295243 ATAACCGGACTAAGATCCGAAGGCATTCATGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
60295283 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
60295323 ATATCCGGGCTAAGTCCCG
1 ATATCCGGGCTAAGACCCG
60295342 GTCTTGAGTT
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
39 1 0.01
40 50 0.63
41 27 0.34
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:60301078 original size:40 final size:40
Alignment explanation
Indices: 60300996--60301179 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
60300986 TATTCGAATG
60300996 ATATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
60301036 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
60301076 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
60301116 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
60301156 ATATCCGGGCTAAGA-CTCGAAGGC
1 ATATCCGGGCTAAGATC-CGAAGGC
60301180 CTTGTGCAAG
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:60301129 original size:80 final size:80
Alignment explanation
Indices: 60300996--60301186 Score: 244
Period size: 80 Copynumber: 2.4 Consensus size: 80
60300986 TATTCGAATG
* *
60300996 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACTATAACCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGCGACTATAACCGGACTAAG-TCCCGAAGGC
* *
60301060 ATTCGTGCGAGTTG-CT
65 ATTCATGCGAG-TGACC
* *
60301076 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGC
* *
60301140 ATTTATGCTAGTGACC
65 ATTCATGCGAGTGACC
* *
60301156 ATATCCGGGCTAAGACTCGAAGGCCTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGC
60301187 AAGTAGTTCT
Statistics
Matches: 98, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
79 9 0.09
80 80 0.82
81 9 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGCA
TTCATGCGAGTGACC
Found at i:60307952 original size:20 final size:19
Alignment explanation
Indices: 60307929--60307999 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
60307919 GGGCACCAAA
60307929 GTGCAATTAGGAGCACGAAT
1 GTGCAATTAGGAGCAC-AAT
* *
60307949 GTGCAATCAGGAGCACCAAA
1 GTGCAATTAGGAGCA-CAAT
* *
60307969 ATGCAATTAGGGGCACAGAT
1 GTGCAATTAGGAGCACA-AT
*
60307989 GTGCATTTAGG
1 GTGCAATTAGG
60308000 GGTATCGAAG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.05
20 38 0.93
21 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.20
Consensus pattern (19 bp):
GTGCAATTAGGAGCACAAT
Found at i:60308000 original size:20 final size:20
Alignment explanation
Indices: 60307929--60308073 Score: 64
Period size: 20 Copynumber: 7.2 Consensus size: 20
60307919 GGGCACCAAA
*
60307929 GTGCAATTAGGAGCAC-GAAT
1 GTGCAATTAGGGGCACAG-AT
* * *
60307949 GTGCAATCAGGAGCACCA-AA
1 GTGCAATTAGGGGCA-CAGAT
*
60307969 ATGCAATTAGGGGCACAGAT
1 GTGCAATTAGGGGCACAGAT
* * *
60307989 GTGCATTTAGGGGTATC-GAA
1 GTGCAATTAGGGGCA-CAGAT
* * *
60308009 GTACAAATAGGGGCATAGAT
1 GTGCAATTAGGGGCACAGAT
* * *
60308029 GTGC-ATTCAGGGGTACCGAA
1 GTGCAATT-AGGGGCACAGAT
* * * *
60308049 GTACAAATAGGGACACGGAT
1 GTGCAATTAGGGGCACAGAT
60308069 GTGCA
1 GTGCA
60308074 TTCAGGGGTA
Statistics
Matches: 89, Mismatches: 29, Indels: 14
0.67 0.22 0.11
Matches are distributed among these distances:
19 4 0.04
20 81 0.91
21 4 0.04
ACGTcount: A:0.34, C:0.16, G:0.31, T:0.19
Consensus pattern (20 bp):
GTGCAATTAGGGGCACAGAT
Found at i:60308020 original size:40 final size:40
Alignment explanation
Indices: 60307976--60308129 Score: 209
Period size: 40 Copynumber: 3.9 Consensus size: 40
60307966 AAAATGCAAT
* *
60307976 TAGGGGCACAGATGTGCATTTAGGGGTATCGAAGTACAAA
1 TAGGGGCACAGATGTGCATTCAGGGGTACCGAAGTACAAA
*
60308016 TAGGGGCATAGATGTGCATTCAGGGGTACCGAAGTACAAA
1 TAGGGGCACAGATGTGCATTCAGGGGTACCGAAGTACAAA
* * * *
60308056 TAGGGACACGGATGTGCATTCAGGGGTATCAAAGTACAAA
1 TAGGGGCACAGATGTGCATTCAGGGGTACCGAAGTACAAA
* * * *
60308096 CAAGGGCATAGATGTGCATTCAAGGGTACCGAAG
1 TAGGGGCACAGATGTGCATTCAGGGGTACCGAAG
60308130 GGCCACTTCT
Statistics
Matches: 98, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (40 bp):
TAGGGGCACAGATGTGCATTCAGGGGTACCGAAGTACAAA
Found at i:60308060 original size:80 final size:80
Alignment explanation
Indices: 60307976--60308129 Score: 245
Period size: 80 Copynumber: 1.9 Consensus size: 80
60307966 AAAATGCAAT
* * * * * *
60307976 TAGGGGCACAGATGTGCATTTAGGGGTATCGAAGTACAAATAGGGGCATAGATGTGCATTCAGGG
1 TAGGGACACAGATGTGCATTCAGGGGTATCAAAGTACAAACAAGGGCATAGATGTGCATTCAAGG
60308041 GTACCGAAGTACAAA
66 GTACCGAAGTACAAA
*
60308056 TAGGGACACGGATGTGCATTCAGGGGTATCAAAGTACAAACAAGGGCATAGATGTGCATTCAAGG
1 TAGGGACACAGATGTGCATTCAGGGGTATCAAAGTACAAACAAGGGCATAGATGTGCATTCAAGG
60308121 GTACCGAAG
66 GTACCGAAG
60308130 GGCCACTTCT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 67 1.00
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (80 bp):
TAGGGACACAGATGTGCATTCAGGGGTATCAAAGTACAAACAAGGGCATAGATGTGCATTCAAGG
GTACCGAAGTACAAA
Found at i:60308809 original size:28 final size:29
Alignment explanation
Indices: 60308763--60308818 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
60308753 TACTTATAAA
* *
60308763 TAACAACTAATACCTC-AAATTCATCATT
1 TAACAACTAAAACCACAAAATTCATCATT
*
60308791 TAACAACTAAAATCACAAAAATTCATCA
1 TAACAACTAAAACCAC-AAAATTCATCA
60308819 ATGGCAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 13 0.57
30 10 0.43
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (29 bp):
TAACAACTAAAACCACAAAATTCATCATT
Found at i:60312322 original size:27 final size:27
Alignment explanation
Indices: 60312284--60312371 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
60312274 GTATGAGATA
60312284 TATATATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATGAATGTGAAAGTGTG
* ***
60312311 TATATATGTGAT-AAGGCCTAA-TG-G
1 TATATATGTGATGAATGTGAAAGTGTG
***
60312335 --CCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATGAATGTGAAAGTGTG
60312360 TATATATGTGAT
1 TATATATGTGAT
60312372 AAGGCGTGAT
Statistics
Matches: 42, Mismatches: 14, Indels: 10
0.64 0.21 0.15
Matches are distributed among these distances:
22 7 0.17
23 5 0.12
24 3 0.07
25 3 0.07
26 5 0.12
27 19 0.45
ACGTcount: A:0.32, C:0.05, G:0.28, T:0.35
Consensus pattern (27 bp):
TATATATGTGATGAATGTGAAAGTGTG
Found at i:60312345 original size:49 final size:49
Alignment explanation
Indices: 60312289--60312701 Score: 579
Period size: 49 Copynumber: 8.8 Consensus size: 49
60312279 AGATATATAT
60312289 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
60312338 ATGTGATGAATGTGAAAGTGTGTATATATGTG---A----TAA-GG-C-
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
60312377 --GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
60312424 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
*
60312473 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTCATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
*
60312522 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
60312571 ATGTGATGAATGAGAAGGTGTATATATATGTGATAAGGCATAATGGCCA
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
60312620 ATGTGATGAATGTGAAA--GTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
60312667 AAGTGATGGATGTGGAA--GTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAG
60312702 TCCTGAAGGG
Statistics
Matches: 333, Mismatches: 19, Indels: 26
0.88 0.05 0.07
Matches are distributed among these distances:
37 30 0.09
40 2 0.01
41 2 0.01
42 3 0.01
44 3 0.01
45 2 0.01
46 2 0.01
47 55 0.17
49 234 0.70
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:60312370 original size:18 final size:18
Alignment explanation
Indices: 60312347--60312407 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 18
60312337 GATGTGATGA
60312347 ATGTGAAAGTGTGTATAT
1 ATGTGAAAGTGTGTATAT
*
60312365 ATGTGATAAG-GCGTGATGA-
1 ATGTGA-AAGTGTGT-AT-AT
60312384 ATGTGAAAGTGTGTATAT
1 ATGTGAAAGTGTGTATAT
60312402 ATGTGA
1 ATGTGA
60312408 TAAGGCCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
17 1 0.03
18 20 0.56
19 14 0.39
20 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.31, T:0.34
Consensus pattern (18 bp):
ATGTGAAAGTGTGTATAT
Found at i:60312382 original size:37 final size:37
Alignment explanation
Indices: 60312340--60312413 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
60312330 AATGGCCGAT
60312340 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGC
1 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGC
60312377 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGC
1 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGC
60312414 CTAATGGCCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.32
Consensus pattern (37 bp):
GTGATGAATGTGAAAGTGTGTATATATGTGATAAGGC
Found at i:60312389 original size:19 final size:17
Alignment explanation
Indices: 60312340--60312392 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 17
60312330 AATGGCCGAT
*
60312340 GTGATGAATGTGAAAGT
1 GTGATGAATGTGAAAGC
60312357 GTGTAT-ATATGTGATAAGGC
1 GTG-ATGA-ATGTGA-AA-GC
60312377 GTGATGAATGTGAAAG
1 GTGATGAATGTGAAAG
60312393 TGTGTATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
17 5 0.17
18 10 0.33
19 10 0.33
20 5 0.17
ACGTcount: A:0.34, C:0.02, G:0.34, T:0.30
Consensus pattern (17 bp):
GTGATGAATGTGAAAGC
Found at i:60315039 original size:21 final size:21
Alignment explanation
Indices: 60315013--60315055 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
60315003 ATGGATAGGG
60315013 TTAGGTGTGTTACACATACTC
1 TTAGGTGTGTTACACATACTC
60315034 TTAGGTGTGTTACACATACTC
1 TTAGGTGTGTTACACATACTC
60315055 T
1 T
60315056 GCTAAGGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (21 bp):
TTAGGTGTGTTACACATACTC
Found at i:60322493 original size:27 final size:27
Alignment explanation
Indices: 60322462--60322520 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
60322452 TACGGAACAA
60322462 AAGGGCATAATC-GTCATTTTAC-CATAC
1 AAGGGCATAA-CGGTCATTTTACAC-TAC
* *
60322489 AAGGGTATTACGGTCATTTTACACTAC
1 AAGGGCATAACGGTCATTTTACACTAC
60322516 AAGGG
1 AAGGG
60322521 TATTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 1 0.04
27 26 0.93
28 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (27 bp):
AAGGGCATAACGGTCATTTTACACTAC
Found at i:60322534 original size:27 final size:28
Alignment explanation
Indices: 60322474--60322538 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
60322464 GGGCATAATC
*
60322474 GTCATTTTAC-CATACAAGGGTATTACG
1 GTCATTTTACACATACAAGGGTATTACA
**
60322501 GTCATTTTACAC-TACAAGGGTATTTTA
1 GTCATTTTACACATACAAGGGTATTACA
*
60322528 GTGATTTTACA
1 GTCATTTTACA
60322539 AACTGAGGTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (28 bp):
GTCATTTTACACATACAAGGGTATTACA
Found at i:60324443 original size:42 final size:42
Alignment explanation
Indices: 60324331--60324482 Score: 207
Period size: 42 Copynumber: 3.6 Consensus size: 42
60324321 TACCATACCA
* * * *
60324331 ATGCCATATCTCAGATATGGTCTTACATGTAA-TCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* * * *
60324373 ATGCCAATAGCCTAGCTATGATCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
60324416 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
60324458 ATGCCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
60324483 GACATAATCC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
42 65 0.68
43 31 0.32
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:60326389 original size:40 final size:40
Alignment explanation
Indices: 60326341--60326416 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
60326331 TAAAAACAAA
60326341 TGGCACTTACTGTGCG-GTGCGAAATAGCTTCGGCTAAATG
1 TGGCACTTACTGTGCGAGTG-GAAATAGCTTCGGCTAAATG
* * *
60326381 TGGCACTTAGTGTGCGATTGGAGATAGCTTCGGCTA
1 TGGCACTTACTGTGCGAGTGGAAATAGCTTCGGCTA
60326417 TATATGTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 30 0.94
41 2 0.06
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (40 bp):
TGGCACTTACTGTGCGAGTGGAAATAGCTTCGGCTAAATG
Found at i:60326500 original size:28 final size:28
Alignment explanation
Indices: 60326425--60326501 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
60326415 TATATATGTA
* *
60326425 TATGGCACTTAGTGTGCAAAATATTAAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
* *
60326453 AATGGCACTTAGTGTGCGAGATATTGAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
*
60326481 TATGGCACTTAGTGTACGAGA
1 TATGGCACTTAGTGTGCGAGA
60326502 CATCGAAGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (28 bp):
TATGGCACTTAGTGTGCGAGATATTAAG
Found at i:60336534 original size:5 final size:5
Alignment explanation
Indices: 60336524--60336599 Score: 52
Period size: 5 Copynumber: 14.8 Consensus size: 5
60336514 ATATTCTTTC
* *
60336524 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
60336572 AAAA- ATAAAT AAAAT AAAAT -AAAT AAAA
1 AAAAT A-AAAT AAAAT AAAAT AAAAT AAAA
60336600 AAATAAGAGG
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
3 3 0.05
4 5 0.09
5 27 0.47
6 22 0.39
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:60336577 original size:6 final size:6
Alignment explanation
Indices: 60336544--60336605 Score: 54
Period size: 6 Copynumber: 10.0 Consensus size: 6
60336534 AATAAAATTG
* * * *
60336544 AAATGA AAATAA AAATCA AAAGAA AAATAA AAATAA ATAAAATA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA-A AAATAA
60336594 ATAA-AA AAATAA
1 A-AATAA AAATAA
60336606 GAGGATTCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
5 2 0.04
6 33 0.73
7 8 0.18
8 2 0.04
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:60340862 original size:26 final size:26
Alignment explanation
Indices: 60340832--60340884 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
60340822 CCTCTATGAA
60340832 TTCATAGGCATCTTCTGATGTTTTAT
1 TTCATAGGCATCTTCTGATGTTTTAT
*
60340858 TTCATAGGCATCTTCTGGTGTTTTAT
1 TTCATAGGCATCTTCTGATGTTTTAT
60340884 T
1 T
60340885 GTTGATGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (26 bp):
TTCATAGGCATCTTCTGATGTTTTAT
Found at i:60342017 original size:13 final size:13
Alignment explanation
Indices: 60341995--60342027 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
60341985 AATGATTTGT
60341995 TTAT-TAAACTAA
1 TTATCTAAACTAA
60342007 TTATCTAAACTAA
1 TTATCTAAACTAA
*
60342020 TTAACTAA
1 TTATCTAA
60342028 TTTACTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:60344644 original size:21 final size:21
Alignment explanation
Indices: 60344618--60344662 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
60344608 CTCACACACG
60344618 CTAGGTTAGTCTGAGAATCAA
1 CTAGGTTAGTCTGAGAATCAA
60344639 CTAGGTTAGTCTGAGAATCAA
1 CTAGGTTAGTCTGAGAATCAA
60344660 CTA
1 CTA
60344663 AACCATAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (21 bp):
CTAGGTTAGTCTGAGAATCAA
Found at i:60346730 original size:42 final size:42
Alignment explanation
Indices: 60346668--60346761 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
60346658 TCTAGCTATG
* * *
60346668 GTCTTACACAAAGTCTCATATTGATGTCATATCCAAGATATA
1 GTCTTACACGAAGTCCCATATTGATGCCATATCCAAGATATA
* *
60346710 GTCTTACACGAAGTCCCATATTGATGCCATATCCCAGATATG
1 GTCTTACACGAAGTCCCATATTGATGCCATATCCAAGATATA
60346752 GTCTTACACG
1 GTCTTACACG
60346762 TAATCTCAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (42 bp):
GTCTTACACGAAGTCCCATATTGATGCCATATCCAAGATATA
Found at i:60347622 original size:12 final size:13
Alignment explanation
Indices: 60347605--60347633 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
60347595 AAGATGGACA
60347605 AATTTGGC-TTTT
1 AATTTGGCTTTTT
60347617 AATTTGGCTTTTT
1 AATTTGGCTTTTT
60347630 AATT
1 AATT
60347634 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:60353361 original size:23 final size:24
Alignment explanation
Indices: 60353331--60353389 Score: 84
Period size: 23 Copynumber: 2.5 Consensus size: 24
60353321 GAACTGGTGG
*
60353331 ACAGTAAGCTCTATTGAACTGA-A
1 ACAGTAAGCTCTAATGAACTGAGA
**
60353354 ACAGTAAGCTCTAATGAGTTGAGA
1 ACAGTAAGCTCTAATGAACTGAGA
60353378 ACAGTAAGCTCT
1 ACAGTAAGCTCT
60353390 TACGAGCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 19 0.59
24 13 0.41
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (24 bp):
ACAGTAAGCTCTAATGAACTGAGA
Found at i:60357057 original size:47 final size:47
Alignment explanation
Indices: 60357006--60357341 Score: 510
Period size: 47 Copynumber: 7.1 Consensus size: 47
60356996 TTAGGATTTT
*
60357006 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
60357053 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
60357100 ATGTGATGGATGTGAACATGCGTATGTGTGATACGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
60357147 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
60357198 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
60357245 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
60357292 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
60357339 ATG
1 ATG
60357342 CGAAACGTGT
Statistics
Matches: 267, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 223 0.84
49 2 0.01
51 42 0.16
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:60357193 original size:145 final size:143
Alignment explanation
Indices: 60357028--60357341 Score: 524
Period size: 145 Copynumber: 2.2 Consensus size: 143
60357018 TGAACATGCG
60357028 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
* * * * *
60357093 ATGGCCAATGTGATGGATGTGAACATGCGTATGTGTGATACGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
*
60357158 GTGAACCCGTATATA
131 GTGAACACG-A-ATA
60357173 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
60357238 ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
*
60357303 GTGAACATGAATA
131 GTGAACACGAATA
*
60357316 TATGTG-G-TAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
60357342 CGAAACGTGT
Statistics
Matches: 161, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
141 18 0.11
142 1 0.01
143 9 0.06
144 1 0.01
145 132 0.82
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (143 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
GTGAACACGAATA
Found at i:60357202 original size:24 final size:24
Alignment explanation
Indices: 60357174--60357249 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
60357164 CCGTATATAT
60357174 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
60357198 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
60357221 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
60357245 ATGTG
1 ATGTG
60357250 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:60357399 original size:46 final size:46
Alignment explanation
Indices: 60357315--60357402 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
60357305 GAACATGAAT
* * *
60357315 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGGTGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGGTGG
* * *
60357361 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAG
60357403 ATGTGTATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGGTGG
Found at i:60357732 original size:37 final size:37
Alignment explanation
Indices: 60357554--60357732 Score: 304
Period size: 37 Copynumber: 4.8 Consensus size: 37
60357544 ATATATTCCA
* *
60357554 GGTAAGATCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
60357591 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
*
60357628 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
60357665 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
* * *
60357702 GGTAAGACCCGATAACTTCATGTGGAGATTT
1 GGTAAGACCCGATGACTACGTGTGGAGATTT
60357733 CGTCTGAGCT
Statistics
Matches: 135, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 135 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
Found at i:60362176 original size:20 final size:20
Alignment explanation
Indices: 60362148--60362189 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
60362138 AAATTCTCGT
*
60362148 TTGTCAAAAATTATTGGTAC
1 TTGTCAAAAATTATTGATAC
*
60362168 TTGTTAAAAATTATTGATAC
1 TTGTCAAAAATTATTGATAC
60362188 TT
1 TT
60362190 TAGTCCAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (20 bp):
TTGTCAAAAATTATTGATAC
Found at i:60367168 original size:55 final size:55
Alignment explanation
Indices: 60367053--60367193 Score: 178
Period size: 55 Copynumber: 2.6 Consensus size: 55
60367043 TACGACATGG
* * *
60367053 CCGTGGTCAAACCTGCCAAAACAACACGGGCGTGAGACACGCCCGTGTGGAAGAA
1 CCGTGGTCGAACCTGTCAAAACAACACGGGCGTGAGACACGCCCGTGTCGAAGAA
* * *
60367108 CCGTGGGT-GAACCTGTCAAAACAACACGGGCGTGCGACACGCCCGTGTCTAA-CA
1 CCGT-GGTCGAACCTGTCAAAACAACACGGGCGTGAGACACGCCCGTGTCGAAGAA
**
60367162 CTCGTGGTCGAACCTGTCAAATTAACACGGGC
1 C-CGTGGTCGAACCTGTCAAAACAACACGGGC
60367194 ATGGGAGAAG
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
54 5 0.07
55 67 0.89
56 3 0.04
ACGTcount: A:0.28, C:0.30, G:0.28, T:0.15
Consensus pattern (55 bp):
CCGTGGTCGAACCTGTCAAAACAACACGGGCGTGAGACACGCCCGTGTCGAAGAA
Found at i:60375456 original size:40 final size:40
Alignment explanation
Indices: 60375376--60375595 Score: 347
Period size: 40 Copynumber: 5.5 Consensus size: 40
60375366 ACCCAAGTTT
* * * *
60375376 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
60375415 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
60375455 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
60375495 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
60375535 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
60375575 CTTCGGG-CTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
60375596 CATTCAAATG
Statistics
Matches: 169, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 24 0.14
40 144 0.85
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:60383528 original size:40 final size:40
Alignment explanation
Indices: 60383448--60383628 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
60383438 ACCCAAGTTT
* * * *
60383448 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
60383487 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
60383527 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
60383567 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
60383607 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
60383629 CATTCAAATG
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 118 0.91
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:60385749 original size:39 final size:40
Alignment explanation
Indices: 60385415--60385759 Score: 367
Period size: 40 Copynumber: 8.7 Consensus size: 40
60385405 CACCAACACA
* * * * * * *
60385415 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * * * * *
60385455 AAGCCTAC-GGACTTTAAGTCCAGATACAGTACCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* *
60385494 AAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * *
60385533 AAGCCTGTGGGTCTTTAAG-CCGTGATACAATTTCAACACG
1 AAGCCTGCGGGTCTTTAAGCCCG-GATACAATTCCAGCACG
*
60385573 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCATCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * * *
60385613 AAGCCTGTGGGTCTTTAAGCCCTGATACAATTTCAGCACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* *
60385653 AATCTTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * * * *
60385693 AAGCCTG-AGGACCTTAAGTCCGGTTACAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
*
60385732 AAGCC-GCGGGTCTTTAAGCCCAGATACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACA
60385760 CATCAAATAT
Statistics
Matches: 258, Mismatches: 42, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
38 1 0.00
39 117 0.45
40 137 0.53
41 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
Found at i:60391481 original size:39 final size:39
Alignment explanation
Indices: 60391431--60391556 Score: 173
Period size: 39 Copynumber: 3.2 Consensus size: 39
60391421 GACTTAATGT
* *
60391431 CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTGTAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* *
60391470 CTAGCAGGCCTCGTGCTGGTGATAAATTTAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* * *
60391509 CTAGTAGGCCTCGTGCCGGTGTTAAGTTC-GAGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAG-GTTTATAC
60391548 CTAGCAGGC
1 CTAGCAGGC
60391557 AAATTGCTGG
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
38 1 0.01
39 75 0.99
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:60393478 original size:37 final size:37
Alignment explanation
Indices: 60393426--60393528 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
60393416 CGAATAATTC
60393426 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
60393463 CTACACGTAGTCATCGGGTCTTACTCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
60393500 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
60393529 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:60393737 original size:48 final size:48
Alignment explanation
Indices: 60393661--60393871 Score: 244
Period size: 48 Copynumber: 4.2 Consensus size: 48
60393651 TGGCCACAAT
* *
60393661 ATATACACATCTCA-AAATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
60393708 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
60393756 ATATATATATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ----------ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
60393814 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
60393862 ACATATATAT
1 ATATACATAT
60393872 ATTTATCTTG
Statistics
Matches: 140, Mismatches: 13, Indels: 21
0.80 0.07 0.12
Matches are distributed among these distances:
47 13 0.09
48 83 0.59
58 44 0.31
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:60393770 original size:58 final size:57
Alignment explanation
Indices: 60393708--60393873 Score: 206
Period size: 58 Copynumber: 3.0 Consensus size: 57
60393698 GCTTTACCAC
*
60393708 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATATAT
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA-ATATATAT
* **
60393766 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC---------
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAATATATAT
*
60393814 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATATAT
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA-ATATATAT
60393872 AT
1 AT
60393874 TTATCTTGTA
Statistics
Matches: 90, Mismatches: 8, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
48 44 0.49
58 46 0.51
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (57 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAATATATAT
Found at i:60393797 original size:106 final size:105
Alignment explanation
Indices: 60393659--60393873 Score: 349
Period size: 106 Copynumber: 2.0 Consensus size: 105
60393649 TTTGGCCACA
60393659 ATATATACACATCTCAAAATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 ATATATACACATCTCAAAATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
* *
60393724 CATATTTCACATTAGCCATTCGGATTTACCACATATATAT
66 CATATTTCACACTAGCCATTCGGATTTACCACACATATAT
* * * **
60393764 ATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ATATATACACATCTCA-AAATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
60393829 ACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
65 ACATATTTCACACTAGCCATTCGGATTTACCACACATATAT
60393870 ATAT
1 ATAT
60393874 TTATCTTGTA
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
105 14 0.14
106 87 0.86
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (105 bp):
ATATATACACATCTCAAAATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
CATATTTCACACTAGCCATTCGGATTTACCACACATATAT
Found at i:60395944 original size:40 final size:40
Alignment explanation
Indices: 60395899--60396083 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
60395889 CTTTCACAAG
* *
60395899 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
60395939 GCCTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
60395979 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
60396019 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAGA-
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAA-AT
* *
60396060 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
60396084 CATTCGAATA
Statistics
Matches: 121, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 92 0.76
41 27 0.22
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:60402962 original size:40 final size:40
Alignment explanation
Indices: 60402917--60403083 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60402907 CGGAATATAA
60402917 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
60402957 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
60402997 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60403037 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60403076 CCGGATAT
1 CCGGATAT
60403084 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60403067 original size:80 final size:79
Alignment explanation
Indices: 60402917--60403083 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
60402907 CGGAATATAA
* *
60402917 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
60402982 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
60402997 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
60403059 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
60403076 CCGGATAT
1 CCGGATAT
60403084 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:60403929 original size:17 final size:19
Alignment explanation
Indices: 60403906--60403951 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
60403896 AAGAAGCATG
60403906 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
60403924 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
60403942 AATCATGCTC
1 AATCATGCTC
60403952 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:60415198 original size:40 final size:40
Alignment explanation
Indices: 60415117--60415258 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
60415107 CAACCAAGTA
* ** *
60415117 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
60415156 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
60415196 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
60415236 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
60415259 CATCCGAATA
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.14
40 83 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:60418718 original size:40 final size:40
Alignment explanation
Indices: 60418663--60418844 Score: 314
Period size: 40 Copynumber: 4.6 Consensus size: 40
60418653 TATTCGAATG
60418663 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60418703 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60418743 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
60418783 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
60418823 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
60418845 TACTTGGGTT
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 14 0.10
40 121 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60424238 original size:29 final size:29
Alignment explanation
Indices: 60424204--60424281 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
60424194 GTGACGAGAT
* *
60424204 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
60424233 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
60424262 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
60424282 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:60429661 original size:40 final size:40
Alignment explanation
Indices: 60429591--60429810 Score: 376
Period size: 40 Copynumber: 5.6 Consensus size: 40
60429581 TATTCGAATG
60429591 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60429630 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60429670 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60429710 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
60429750 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
60429790 ATATCC-GGCTAAAT-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
60429811 TACTTGGGTT
Statistics
Matches: 175, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
38 7 0.04
39 21 0.12
40 145 0.83
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60434718 original size:40 final size:39
Alignment explanation
Indices: 60434591--60434720 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
60434581 AGAAATTGAA
* * *
60434591 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
60434632 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
60434670 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
60434711 TTATATCCGG
1 TTATATCCGG
60434721 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:60437344 original size:36 final size:36
Alignment explanation
Indices: 60437304--60437372 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
60437294 GATTTATAAT
60437304 ACTTCGGTCTAAGTTTTATTAATATTTACATTCTAA
1 ACTTCGGTCTAAGTTTTATTAATATTTACATTCTAA
* *
60437340 ACTTCGTTCTAAGTTTTATTTATATTTACATTC
1 ACTTCGGTCTAAGTTTTATTAATATTTACATTC
60437373 AAGAAGGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.51
Consensus pattern (36 bp):
ACTTCGGTCTAAGTTTTATTAATATTTACATTCTAA
Found at i:60441049 original size:28 final size:29
Alignment explanation
Indices: 60441017--60441130 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
60441007 TACCTGTATC
* *
60441017 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
60441045 TGGCCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCCAAATCACATT-CATA
*
60441074 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
60441103 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
60441131 ATCATGCTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
28 27 0.35
29 48 0.62
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:60441367 original size:16 final size:16
Alignment explanation
Indices: 60441346--60441400 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
60441336 CCAAACTTTA
60441346 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
*
60441362 AGCTTTTCGGTATTTC
1 AGCTTTTCGGCATTTC
*
60441378 -GGTATTTCGGCATTTC
1 AGCT-TTTCGGCATTTC
*
60441394 GGCTTTT
1 AGCTTTT
60441401 ACCGATTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 2 0.06
16 29 0.88
17 2 0.06
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:60441377 original size:24 final size:24
Alignment explanation
Indices: 60441350--60441395 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
60441340 ACTTTAAGCT
*
60441350 TTTCGGCATTTCAGCTTTTCGGTA
1 TTTCGGCATTTCAGCATTTCGGTA
* *
60441374 TTTCGGTATTTCGGCATTTCGG
1 TTTCGGCATTTCAGCATTTCGG
60441396 CTTTTACCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.20, G:0.24, T:0.46
Consensus pattern (24 bp):
TTTCGGCATTTCAGCATTTCGGTA
Found at i:60441396 original size:8 final size:8
Alignment explanation
Indices: 60441350--60441396 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
60441340 ACTTTAAGCT
60441350 TTTCGGCA
1 TTTCGGCA
* *
60441358 TTTCAGCT
1 TTTCGGCA
*
60441366 TTTCGGTA
1 TTTCGGCA
*
60441374 TTTCGGTA
1 TTTCGGCA
60441382 TTTCGGCA
1 TTTCGGCA
60441390 TTTCGGC
1 TTTCGGC
60441397 TTTTACCGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.45
Consensus pattern (8 bp):
TTTCGGCA
Found at i:60444493 original size:46 final size:46
Alignment explanation
Indices: 60444439--60444614 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
60444429 TGGTTGAGCA
*
60444439 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
60444485 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
60444530 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
60444578 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60444615 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 60 0.57
47 27 0.25
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:60444595 original size:93 final size:93
Alignment explanation
Indices: 60444436--60444607 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
60444426 GGATGGTTGA
* * * *
60444436 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCATTGAGT
60444501 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
60444529 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCATTGAGT
60444594 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60444608 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60453377 original size:30 final size:30
Alignment explanation
Indices: 60453322--60453452 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
60453312 ATAGTGAATC
*
60453322 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
60453351 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
60453381 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
60453409 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
60453439 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60453453 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:60453432 original size:58 final size:58
Alignment explanation
Indices: 60453321--60453452 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
60453311 TATAGTGAAT
* * * * *
60453321 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
60453380 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
60453438 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
60453453 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:60455184 original size:46 final size:46
Alignment explanation
Indices: 60455132--60455307 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
60455122 TGGTTGAGCA
60455132 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60455178 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
60455223 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60455271 CCCGAACTCATTAAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60455308 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60455288 original size:93 final size:93
Alignment explanation
Indices: 60455129--60455300 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
60455119 GGATGGTTGA
* ** * *
60455129 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAGT
60455194 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60455222 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAGT
60455287 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60455301 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60471813 original size:46 final size:46
Alignment explanation
Indices: 60471761--60471936 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60471751 TGGTTGAGCA
60471761 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60471807 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60471852 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60471900 CCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60471937 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60471917 original size:93 final size:93
Alignment explanation
Indices: 60471758--60471929 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60471748 GGATGGTTGA
* **
60471758 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60471823 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
60471851 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60471916 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60471930 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60482785 original size:33 final size:33
Alignment explanation
Indices: 60482743--60482808 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
60482733 TAGATGAGTT
60482743 AGAAGTGACCTTGGAATCTTCTATGGCTGCTAA
1 AGAAGTGACCTTGGAATCTTCTATGGCTGCTAA
60482776 AGAAGTGACCTTGGAATCTTCTATGGCTGCTAA
1 AGAAGTGACCTTGGAATCTTCTATGGCTGCTAA
60482809 CTCTTGGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (33 bp):
AGAAGTGACCTTGGAATCTTCTATGGCTGCTAA
Found at i:60484116 original size:12 final size:12
Alignment explanation
Indices: 60484080--60484128 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
60484070 CCTAGCATTT
60484080 TTTATTCA-TAA
1 TTTATTCATTAA
* *
60484091 TTGATTTTATTAA
1 TTTA-TTCATTAA
60484104 TTTATTCATTAA
1 TTTATTCATTAA
*
60484116 TCTATTCATTAA
1 TTTATTCATTAA
60484128 T
1 T
60484129 CATTTTCATC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 3 0.10
12 22 0.71
13 6 0.19
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.57
Consensus pattern (12 bp):
TTTATTCATTAA
Found at i:60490307 original size:43 final size:42
Alignment explanation
Indices: 60490238--60490352 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 42
60490228 AATTCCATAT
* * **
60490238 CCCATATATGGTCTTACATGTCATCTCATATCGATGTCAATAG
1 CCCAGATATGGTCTTACACGAAATCTCATATCGATG-CAATAG
* * * * *
60490281 CCTAGCTATGGTCTTACAGGAAATCTCATATCGATGCCATAT
1 CCCAGATATGGTCTTACACGAAATCTCATATCGATGCAATAG
*
60490323 CCCAGATATGGTCTTACACGAAGTCTCATA
1 CCCAGATATGGTCTTACACGAAATCTCATA
60490353 CTGATGACAC
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACGAAATCTCATATCGATGCAATAG
Found at i:60490350 original size:42 final size:42
Alignment explanation
Indices: 60490232--60490393 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
60490222 CATAACAATT
* * *
60490232 CCATATCCCATATATGGTCTTACATGTCATCTCATATCGATG
1 CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATG
* * * * * *
60490274 TCAATAGCCTAGCTATGGTCTTACAGGAAATCTCATATCGATG
1 -CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATG
60490317 CCATATCCCAGATATGGTCTTACACG-AAGTCTCATA-CTGATG
1 CCATATCCCAGATATGGTCTTACACGTAA-TCTCATATC-GATG
* * * *
60490359 ACACATCCTAGATATGGGCCTTACACGTAATCTCA
1 CCATATCCCAGATAT-GGTCTTACACGTAATCTCA
60490394 GTAACCCTAA
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
41 3 0.03
42 44 0.45
43 49 0.50
44 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATG
Found at i:60490382 original size:85 final size:84
Alignment explanation
Indices: 60490232--60490393 Score: 186
Period size: 85 Copynumber: 1.9 Consensus size: 84
60490222 CATAACAATT
* * * * * *
60490232 CCATATCCCATATATGGTCTTACATGTCATCTCATATCGATGTCAATAGCCTAGCTATGGTCTTA
1 CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGACAATA-CCTAGATATGGCCTTA
*
60490297 CAGGAAATCTCATATCGATG
65 CACGAAATCTCATATCGATG
60490317 CCATATCCCAGATATGGTCTTACACG-AAGTCTCATA-CTGATGACACAT-CCTAGATATGGGCC
1 CCATATCCCAGATATGGTCTTACACGTAA-TCTCATATC-GATGACA-ATACCTAGATAT-GGCC
*
60490379 TTACACGTAATCTCA
62 TTACACGAAATCTCA
60490394 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
84 10 0.15
85 53 0.82
86 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (84 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGACAATACCTAGATATGGCCTTAC
ACGAAATCTCATATCGATG
Found at i:60492027 original size:20 final size:20
Alignment explanation
Indices: 60492002--60492096 Score: 118
Period size: 20 Copynumber: 4.8 Consensus size: 20
60491992 TAATAGCAAC
*
60492002 TCATCCGTATAAACAATACT
1 TCATCCGTATAAACAATAAT
60492022 TCATCCGTATAAACAATAAT
1 TCATCCGTATAAACAATAAT
* * *
60492042 TCATCCGTATAAATAGTACT
1 TCATCCGTATAAACAATAAT
* * *
60492062 TCATCCATATAAATAGTAAT
1 TCATCCGTATAAACAATAAT
*
60492082 TCATCCTTATAAACA
1 TCATCCGTATAAACA
60492097 CATAGCTTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 67 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (20 bp):
TCATCCGTATAAACAATAAT
Found at i:60492052 original size:40 final size:40
Alignment explanation
Indices: 60492002--60492096 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
60491992 TAATAGCAAC
*
60492002 TCATCCGTATAAACAATACTTCATCCGTATAAACAATAAT
1 TCATCCGTATAAACAATACTTCATCCATATAAACAATAAT
* * * *
60492042 TCATCCGTATAAATAGTACTTCATCCATATAAATAGTAAT
1 TCATCCGTATAAACAATACTTCATCCATATAAACAATAAT
*
60492082 TCATCCTTATAAACA
1 TCATCCGTATAAACA
60492097 CATAGCTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (40 bp):
TCATCCGTATAAACAATACTTCATCCATATAAACAATAAT
Found at i:60492073 original size:60 final size:58
Alignment explanation
Indices: 60491971--60492096 Score: 146
Period size: 60 Copynumber: 2.1 Consensus size: 58
60491961 CTCTCAATCA
* * * *
60491971 TATAAATAATAATTCATTCGATAATAGCAACTCATCCGTATAAACAATACTTCATCCG
1 TATAAACAATAATTCATCCGATAATAGCAACTCATCCATATAAACAATAATTCATCCG
* * * *
60492029 TATAAACAATAATTCATCCGTATAAATAG-TACTTCATCCATATAAATAGTAATTCATCCT
1 TATAAACAATAATTCATCCG-AT-AATAGCAAC-TCATCCATATAAACAATAATTCATCCG
60492089 TATAAACA
1 TATAAACA
60492097 CATAGCTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
58 18 0.32
59 4 0.07
60 35 0.61
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.33
Consensus pattern (58 bp):
TATAAACAATAATTCATCCGATAATAGCAACTCATCCATATAAACAATAATTCATCCG
Found at i:60492338 original size:24 final size:23
Alignment explanation
Indices: 60492273--60492339 Score: 73
Period size: 24 Copynumber: 2.9 Consensus size: 23
60492263 GAACTGATGG
60492273 ACAGTAAGCTC-TATTGAGCTAAA
1 ACAGTAAGCTCTTA-TGAGCTAAA
* * * *
60492296 ACGGTAAACTCTGACGAGCTAAAA
1 ACAGTAAGCTCTTATGAGCT-AAA
60492320 ACAGTAAGCTCTTATGAGCT
1 ACAGTAAGCTCTTATGAGCT
60492340 GATATATCAG
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
23 14 0.41
24 20 0.59
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (23 bp):
ACAGTAAGCTCTTATGAGCTAAA
Found at i:60498333 original size:6 final size:6
Alignment explanation
Indices: 60498322--60498429 Score: 89
Period size: 6 Copynumber: 17.8 Consensus size: 6
60498312 AACCAAAATG
* * *
60498322 AGAATC AGAATC AGAATC AGTAA-C AGAATC AAAATC AAAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
60498370 AGTAA-C AGAATC AAAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
60498419 AGAATC AGAAT
1 AGAATC AGAAT
60498430 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
5 6 0.07
6 71 0.85
7 5 0.06
8 2 0.02
ACGTcount: A:0.52, C:0.15, G:0.14, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:60498358 original size:30 final size:30
Alignment explanation
Indices: 60498324--60498429 Score: 151
Period size: 30 Copynumber: 3.5 Consensus size: 30
60498314 CCAAAATGAG
*
60498324 AATCAGAATCAGAATCAGTAACAGAATCAA
1 AATCAGAATCAGAATTAGTAACAGAATCAA
*
60498354 AATCAAAATCA-ATATTAGTAACAGAATCAA
1 AATCAGAATCAGA-ATTAGTAACAGAATCAA
* *
60498384 AATCAGAATCAGAATTACGTGACAGAATCAG
1 AATCAGAATCAGAATTA-GTAACAGAATCAA
60498415 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
60498430 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.01
30 40 0.59
31 27 0.40
ACGTcount: A:0.52, C:0.15, G:0.13, T:0.20
Consensus pattern (30 bp):
AATCAGAATCAGAATTAGTAACAGAATCAA
Found at i:60498833 original size:22 final size:22
Alignment explanation
Indices: 60498785--60498843 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
60498775 GTAAATACGT
*
60498785 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
60498807 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
60498829 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
60498844 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:60499010 original size:27 final size:26
Alignment explanation
Indices: 60498931--60499013 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
60498921 TCGATCGGTC
* * *
60498931 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
60498957 ATACAAATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
60498984 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
60499011 AAC
1 AAC
60499014 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:60499242 original size:27 final size:27
Alignment explanation
Indices: 60499212--60499407 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
60499202 GGGGCAAAAT
* * * *
60499212 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
60499239 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60499266 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
60499293 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
60499320 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60499347 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60499374 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60499401 AGTAATT
1 GGTAATT
60499408 TCACAATCAA
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Done.