Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 202 of 770
Found at i:60499442 original size:27 final size:27
Alignment explanation
Indices: 60499412--60499659 Score: 302
Period size: 27 Copynumber: 9.2 Consensus size: 27
60499402 GTAATTTCAC
* *
60499412 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60499439 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60499466 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
60499493 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
60499520 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60499547 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60499574 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60499601 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
60499628 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
60499655 AATCG
1 AATCG
60499660 GGAGTACTTT
Statistics
Matches: 195, Mismatches: 22, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 191 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:60499688 original size:54 final size:54
Alignment explanation
Indices: 60499402--60499690 Score: 280
Period size: 54 Copynumber: 5.4 Consensus size: 54
60499392 GGGTATTTCA
* * * *
60499402 GTAATTTCAC-AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* ** * * * **
60499455 ATAATTTTGTAAA-CTGAGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTTTACAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* ** **
60499509 GTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* * *
60499563 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATG
* ** ***
60499617 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG-GGAGTACTTTG
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG-GTAAAATG
*
60499671 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAAATCGAGGG
60499691 CATTTCAGTA
Statistics
Matches: 194, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
53 10 0.05
54 182 0.94
55 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
Found at i:60501707 original size:6 final size:6
Alignment explanation
Indices: 60501675--60501776 Score: 68
Period size: 6 Copynumber: 16.8 Consensus size: 6
60501665 AACCAAAATG
* * *
60501675 AGAATC ATAATC AAAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * *
60501723 AGTAA-C AAAATC AAAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
60501772 AGAAT
1 AGAAT
60501777 GTGAATGCAA
Statistics
Matches: 76, Mismatches: 11, Indels: 18
0.72 0.10 0.17
Matches are distributed among these distances:
5 6 0.08
6 63 0.83
7 5 0.07
8 2 0.03
ACGTcount: A:0.52, C:0.15, G:0.13, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:60501711 original size:30 final size:30
Alignment explanation
Indices: 60501675--60501776 Score: 132
Period size: 30 Copynumber: 3.4 Consensus size: 30
60501665 AACCAAAATG
* *
60501675 AGAATCATAATCAAAATCAGTAACAGAATC
1 AGAATCAGAATCAAAATTAGTAACAGAATC
* *
60501705 AGAATCAGAATCAATATTAGTAACAAAATC
1 AGAATCAGAATCAAAATTAGTAACAGAATC
* * *
60501735 AAAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAAAATTA-GTAACAGAATC
60501766 AGAATCAGAAT
1 AGAATCAGAAT
60501777 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
30 42 0.69
31 19 0.31
ACGTcount: A:0.52, C:0.15, G:0.13, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAAAATTAGTAACAGAATC
Found at i:60501942 original size:27 final size:26
Alignment explanation
Indices: 60501894--60501967 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
60501884 AGCATGGCTG
* * *
60501894 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
60501920 CTAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
60501947 CCAGAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
60501968 AACCCACCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.88
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:60502180 original size:22 final size:22
Alignment explanation
Indices: 60502132--60502190 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
60502122 GTAAATACAT
*
60502132 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
60502154 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
60502176 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
60502191 TAATAACGAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:60502357 original size:27 final size:26
Alignment explanation
Indices: 60502278--60502360 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
60502268 TCGATCGGTC
* * *
60502278 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGACAAAGCCACCAG
60502304 ATACAGATATTGTGACAAAGCCACCAG
1 A-ACAGATATTGTGACAAAGCCACCAG
* *
60502331 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGACAAAGCCACCAG
60502358 AAC
1 AAC
60502361 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGACAAAGCCACCAG
Found at i:60502589 original size:27 final size:27
Alignment explanation
Indices: 60502559--60502754 Score: 225
Period size: 27 Copynumber: 7.3 Consensus size: 27
60502549 GGGGCAAAAT
* * *
60502559 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
60502586 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60502613 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
60502640 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60502667 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
60502694 AGTAATTCTACCCTA-AAGGGGTATTTC
1 GGTAATTCTACCCTACAA-GGGTATTTC
**
60502721 GAAAATTCTACCCTAC-AGTGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
60502748 AGTAATT
1 GGTAATT
60502755 TCACAATCAA
Statistics
Matches: 141, Mismatches: 25, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.02
27 138 0.98
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:60502703 original size:81 final size:81
Alignment explanation
Indices: 60502561--60502754 Score: 255
Period size: 81 Copynumber: 2.4 Consensus size: 81
60502551 GGCAAAATGG
* * * * * * *
60502561 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
60502626 TATAA-GGGTATTTCGA
66 TA-AAGGGGTATTTCGA
* * *
60502642 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
60502707 TAAAGGGGTATTTCGA
66 TAAAGGGGTATTTCGA
* * *
60502723 AAATTCTACCCTACAGTGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
60502755 TCACAATCAA
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 96 0.98
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TAAAGGGGTATTTCGA
Found at i:60502795 original size:27 final size:27
Alignment explanation
Indices: 60502759--60503033 Score: 311
Period size: 27 Copynumber: 10.2 Consensus size: 27
60502749 GTAATTTCAC
*
60502759 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60502786 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
60502813 AA-CTGAAGGTAAACCAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
60502840 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
60502867 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60502894 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* ** *
60502921 AATTGAGGGTAAAATAGTAATTCCGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
60502948 AA-CTGATGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
60502975 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
60503002 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
60503029 AATCG
1 AATCG
60503034 GGAGTACTTT
Statistics
Matches: 210, Mismatches: 34, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
26 1 0.00
27 207 0.99
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:60503048 original size:54 final size:54
Alignment explanation
Indices: 60502759--60503064 Score: 251
Period size: 54 Copynumber: 5.7 Consensus size: 54
60502749 GTAATTTCAC
* * ** * *
60502759 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTA
* **** ** * * **
60502813 AA-CTGAAGGTAAACCAATAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACA
1 AATC-GAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTA
* * *
60502867 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTA
* * * * *
60502921 AATTGAGGGTAAAATAGTAATTCCGTA-AACT-GATGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATT-C-TACAAATCGAGGGTAAAACGGTAATTCTGTA
* * *
60502975 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTA
*** * *
60503029 AATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 AATCGAGG-GTAAAATGGTAATTCTACAAATCGAGGG
60503065 CATTTCAGTA
Statistics
Matches: 204, Mismatches: 41, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
52 2 0.01
53 7 0.03
54 189 0.93
55 4 0.02
56 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTCTGTA
Found at i:60503052 original size:81 final size:81
Alignment explanation
Indices: 60502759--60503033 Score: 347
Period size: 81 Copynumber: 3.4 Consensus size: 81
60502749 GTAATTTCAC
* *
60502759 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAAGGT
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGT
* ** *
60502823 AAACCAATAATTCTGTA
65 AAAACGGTAATTCTATA
* ** **
60502840 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
60502905 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
** ** * *
60502921 AATTGAGGGTAAAATAGTAATTCCGTAAA-CTGATGGTAAAACGGTAATTTTGTAAATCGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
60502985 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
* *
60503002 AATCGAGGGTAAAATGGTAATTCTGTAAATCG
1 AATCAAGGGTAAAACGGTAATTCTGTAAATCG
60503034 GGAGTACTTT
Statistics
Matches: 166, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 163 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:60504100 original size:45 final size:45
Alignment explanation
Indices: 60504035--60504158 Score: 155
Period size: 46 Copynumber: 2.7 Consensus size: 45
60504025 GGGGTAAGGT
60504035 GCCAATGCCATGTCCCAGACATGGTCTTACACTAAC-ACATCTTGTA-
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAACTACATCTTG-AG
* *
60504081 GCCAATGCATGTCCCAGACATGTCTTACACTGACTTACGTCTTGAG
1 GCCAATGCATGTCCCAGACATGTCTTACACTAAC-TACATCTTGAG
*
60504127 GCCGATGCATG-CCCTAGACATGTCTTACACTA
1 GCCAATGCATGTCCC-AGACATGTCTTACACTA
60504159 GCACTCGTCT
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
44 12 0.17
45 18 0.26
46 40 0.57
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTAACTACATCTTGAG
Found at i:60504178 original size:46 final size:46
Alignment explanation
Indices: 60504043--60504251 Score: 130
Period size: 46 Copynumber: 4.5 Consensus size: 46
60504033 GTGCCAATGC
* * ** *
60504043 CATGTCCCAGACATGGTCTTACACTAAC--ACATCTTGTA-GCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGACTTACGTC-TCAAGGCCGATG
**
60504088 CATGTCCCAGACATGTCTTACACTGACTTACGTCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACGTCTCAAGGCCGATG
** *
60504134 CATG-CCCTAGACATGTCTTACACTAGCAC-T-CGTCTCAATTCCGATAC
1 CATGTCCC-AGACATGTCTTACACT-G-ACTTACGTCTCAAGGCCGAT-G
* * * * *
60504181 CATGTCTCAGACGTGGTCTTACACTGGC-T-C-TCATGATATGGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTTACGTC-TCA-A-GGCCGATG
60504228 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
60504252 AGCTCACAAT
Statistics
Matches: 132, Mismatches: 20, Indels: 23
0.75 0.11 0.13
Matches are distributed among these distances:
44 12 0.09
45 21 0.16
46 56 0.42
47 25 0.19
48 18 0.14
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTTACGTCTCAAGGCCGATG
Found at i:60508380 original size:29 final size:29
Alignment explanation
Indices: 60508290--60508449 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
60508280 ACTCGATTTC
* * **
60508290 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
60508319 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
60508347 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
60508377 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
60508406 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
60508435 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
60508450 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:60523444 original size:14 final size:13
Alignment explanation
Indices: 60523411--60523445 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
60523401 ATGTTTAAAA
60523411 ACTTTTATTTGTT
1 ACTTTTATTTGTT
60523424 A-TTTTATGTTGTT
1 ACTTTTAT-TTGTT
60523437 ACTTTTATT
1 ACTTTTATT
60523446 CTATTTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.30
13 8 0.40
14 6 0.30
ACGTcount: A:0.17, C:0.06, G:0.09, T:0.69
Consensus pattern (13 bp):
ACTTTTATTTGTT
Found at i:60534502 original size:126 final size:125
Alignment explanation
Indices: 60534278--60534523 Score: 366
Period size: 126 Copynumber: 2.0 Consensus size: 125
60534268 ATCACATCAG
* * * * * *
60534278 GAGACTCTGCCTCTTCATGAGCGCGAATAGTTTAAGTCCTTGTAGGCTCTCTGCCATCGGACCTC
1 GAGACTCTACCTCTTCACGAGCACGAATAGGTTAAGTCCTTGTAGGCGCTCTGCCATCAGACCTC
* * **
60534343 ACTACAGCATCTCTTGGTGCACATCTGCTAGTAGCCCCACTTCTGGGGTTCTTTTTTCAA
66 ACTACAGCATCTCTTAGCGCACATCTGCTAGTAGCCCCACTTCCAGGGTTCTTTTTTCAA
* *
60534403 GAGACTCTACCTCTTCACGAGTACGAATAGCGTTAAGTCCTTGTAGGCGCTCTGCCCTCAGACCT
1 GAGACTCTACCTCTTCACGAGCACGAATAG-GTTAAGTCCTTGTAGGCGCTCTGCCATCAGACCT
*
60534468 TACTACAGCATCTCTTAGCGCACATCTGCTAGTAGCCCCACTTCCAGGGTTCTTTT
65 CACTACAGCATCTCTTAGCGCACATCTGCTAGTAGCCCCACTTCCAGGGTTCTTTT
60534524 GTGGTCTTCC
Statistics
Matches: 107, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
125 26 0.24
126 81 0.76
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (125 bp):
GAGACTCTACCTCTTCACGAGCACGAATAGGTTAAGTCCTTGTAGGCGCTCTGCCATCAGACCTC
ACTACAGCATCTCTTAGCGCACATCTGCTAGTAGCCCCACTTCCAGGGTTCTTTTTTCAA
Found at i:60546353 original size:30 final size:30
Alignment explanation
Indices: 60546319--60546377 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
60546309 TACTGGTCTC
60546319 GGGACCACAAATCCGAGATAGAAAAATTTT
1 GGGACCACAAATCCGAGATAGAAAAATTTT
60546349 GGGACCACAAATCCGAGATAGAAAAATTT
1 GGGACCACAAATCCGAGATAGAAAAATTT
60546378 ACTTTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (30 bp):
GGGACCACAAATCCGAGATAGAAAAATTTT
Found at i:60546805 original size:12 final size:12
Alignment explanation
Indices: 60546788--60546812 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60546778 ATGTAAGTGA
60546788 TCTTGATGATTT
1 TCTTGATGATTT
60546800 TCTTGATGATTT
1 TCTTGATGATTT
60546812 T
1 T
60546813 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:60549142 original size:3 final size:3
Alignment explanation
Indices: 60549134--60549166 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
60549124 CCCATACGGG
60549134 TAA TAA TAA TAA TAA TAA TAA TAA TATA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA
60549167 TAAAAAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:60550810 original size:47 final size:47
Alignment explanation
Indices: 60550740--60550914 Score: 167
Period size: 47 Copynumber: 3.7 Consensus size: 47
60550730 CGGCCATATT
* **
60550740 ATGAGAGCCAGTGTAAGACCATGTCAGGGACATGGCATCAACTTTCAG
1 ATGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCATCAACAAT-AG
* * * * * *
60550788 ACGAGGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATATT
1 ATGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCATCAACAATA-G
* * *
60550834 ATGAGAGCCAGTGTAAGACCATGTCAGGGACATGGCATCGACACAGAG
1 ATGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCATCAACA-ATAG
* * *
60550882 ATGAGTGCTAGAGTAAGA-CATGTCTGGGACATG
1 ATGAGAGCTAGTGTAAGACCATGTCAGGGACATG
60550915 CATTGGCCTC
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 23 0.23
47 40 0.39
48 36 0.35
49 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.30, T:0.21
Consensus pattern (47 bp):
ATGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCATCAACAATAG
Found at i:60550867 original size:94 final size:92
Alignment explanation
Indices: 60550706--60551060 Score: 348
Period size: 94 Copynumber: 3.8 Consensus size: 92
60550696 GGGTGTTACA
* * * *
60550706 GTAAGACATGTCTAGGATATGCTTCGGCCAT-ATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
1 GTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
* * *
60550770 CATGGCATCAACTTTCAGACGAGGGCTAGT
66 CATGGCATCGAC--TAAGA-GAGTGCTAGT
60550800 GTAAGACATGTCTGGGACATGCATCAGCCAT-ATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
1 GTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
* *
60550864 CATGGCATCGACACAGAGATGAGTGCTAGA
66 CATGGCATCGAC-TA-AGA-GAGTGCTAGT
** * * *
60550894 GTAAGACATGTCTGGGACATGCATTGGCC-TCGA-CA-GAGATAGCCAGTGTAAGA-CGTGTCTG
1 GTAAGACATGTCTGGGACATGCATCAGCCATC-ATTATGAG--AGCCAGTGTAAGACCATGTCAG
* * * *
60550955 GGACA-CGCATCGGCTAAGAGTTGTGCAAGT
63 GGACATGGCATCGACTAAGAG-AGTGCTAGT
* * *
60550985 GTAAGACATGTCTGGGACATGCATCAG-CATGCATATATGAGATCCAATGTAAGACCATGTCTGG
1 GTAAGACATGTCTGGGACATGCATCAGCCAT-CAT-TATGAGAGCCAGTGTAAGACCATGTCAGG
*
60551049 GACATTGCATCG
64 GACATGGCATCG
60551061 GCAATATATC
Statistics
Matches: 219, Mismatches: 29, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
90 2 0.01
91 36 0.16
92 13 0.06
93 24 0.11
94 130 0.59
95 14 0.06
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (92 bp):
GTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGTCAGGGA
CATGGCATCGACTAAGAGAGTGCTAGT
Found at i:60550945 original size:47 final size:44
Alignment explanation
Indices: 60550797--60551062 Score: 171
Period size: 47 Copynumber: 5.7 Consensus size: 44
60550787 GACGAGGGCT
* ** *
60550797 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGC-TAAGA-GATGAGCA
* * *
60550843 AGTGTAAGACCATGTCAGGGACATGGCATCGAC-ACAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-AGAGATGA--GCA
* * *
60550891 AGAGTAAGACATGTCTGGGACATGCATTGGCCTCGACAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CT--A-AGAGATGAGCA
* * * *
60550938 AGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAGCA
* * * *
60550982 AGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGATCCA
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-T-AAGAGATGAG---CA
60551031 A-TGTAAGACCATGTCTGGGACATTGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCGGC
60551063 AATATATCCC
Statistics
Matches: 176, Mismatches: 26, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
43 5 0.03
44 31 0.18
45 4 0.02
46 24 0.14
47 57 0.32
48 22 0.12
49 17 0.10
50 16 0.09
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAGCA
Found at i:60560804 original size:47 final size:47
Alignment explanation
Indices: 60560686--60560855 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 47
60560676 GGATGGTTGA
*
60560686 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
60560734 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
60560777 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* * *
60560826 -C-GCCGAGCTCATTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
60560856 GCTTATGGGC
Statistics
Matches: 104, Mismatches: 9, Indels: 21
0.78 0.07 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 29 0.28
46 30 0.29
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:60563792 original size:15 final size:15
Alignment explanation
Indices: 60563772--60563835 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
60563762 GTATCTTGGG
60563772 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
60563787 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
60563802 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
60563817 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
60563830 TTTCTT
1 TTTCTT
60563836 GTTATCTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 4 0.09
15 33 0.73
16 2 0.04
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60566256 original size:46 final size:46
Alignment explanation
Indices: 60566206--60566381 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
60566196 TGGTTGAGCA
*
60566206 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
60566252 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* * *
60566299 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
60566345 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60566382 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 2 0.02
46 58 0.55
47 25 0.24
48 2 0.02
50 5 0.05
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:60566362 original size:93 final size:93
Alignment explanation
Indices: 60566203--60566372 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
60566193 GGATGGTTGA
* * *
60566203 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
60566268 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* * *
60566296 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
*
60566361 TGAGTCTGAGTT
66 TGAGTCCGAGTT
60566373 CGCTTATGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:60575152 original size:12 final size:12
Alignment explanation
Indices: 60575135--60575159 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60575125 ATGCAAGTGA
60575135 TCTTGATGATTT
1 TCTTGATGATTT
60575147 TCTTGATGATTT
1 TCTTGATGATTT
60575159 T
1 T
60575160 ACATTTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:60581871 original size:22 final size:22
Alignment explanation
Indices: 60581828--60581881 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
60581818 TTATTTTATG
*
60581828 TTTTTAATTTTTATTAAAACTA
1 TTTTTATTTTTTATTAAAACTA
*
60581850 CTTTTTATTTTTTATT-ATACTA
1 -TTTTTATTTTTTATTAAAACTA
*
60581872 ATTTTATTTT
1 TTTTTATTTT
60581882 CTTAATCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 9 0.32
22 5 0.18
23 14 0.50
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTTATTTTTTATTAAAACTA
Found at i:60584492 original size:40 final size:40
Alignment explanation
Indices: 60584447--60584615 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
60584437 CGGAATATAA
60584447 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60584487 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
60584527 CCGGAATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGG-ATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60584568 CCGGATATAAATTC-C-AGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATAT-AA-TCACTAGCACAAATGCCTTCGGGTCTTAGC
60584608 CCGGATAT
1 CCGGATAT
60584616 CATTCAATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 72 0.67
41 34 0.31
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60592486 original size:40 final size:40
Alignment explanation
Indices: 60592441--60592607 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
60592431 CGGAATATAA
60592441 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
60592481 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
60592521 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60592561 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60592600 CCGGATAT
1 CCGGATAT
60592608 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60596213 original size:40 final size:39
Alignment explanation
Indices: 60596169--60596386 Score: 226
Period size: 40 Copynumber: 5.5 Consensus size: 39
60596159 GCTCGATTGT
* * *
60596169 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
60596209 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
60596249 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
60596289 CTTCGGGAC-TAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
60596328 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
60596369 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
60596387 ACACCATTCG
Statistics
Matches: 154, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 40 0.26
40 86 0.56
41 27 0.18
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:60604312 original size:40 final size:39
Alignment explanation
Indices: 60604268--60604486 Score: 217
Period size: 40 Copynumber: 5.5 Consensus size: 39
60604258 GCTCGATTGT
* * *
60604268 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
60604308 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
60604348 CTTTGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
60604388 CTTCGGGACTTAACTCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
60604428 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
60604469 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
60604487 ACACCATTCG
Statistics
Matches: 152, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.01
40 122 0.80
41 27 0.18
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:60605201 original size:2 final size:2
Alignment explanation
Indices: 60605194--60605219 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60605184 ATGTGCAAAC
60605194 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60605220 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60608306 original size:40 final size:40
Alignment explanation
Indices: 60608262--60608413 Score: 268
Period size: 40 Copynumber: 3.8 Consensus size: 40
60608252 CCAGCATGAT
* * * *
60608262 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
60608302 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
60608342 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
60608382 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
60608414 CTCAATTCTC
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:60610711 original size:49 final size:47
Alignment explanation
Indices: 60610536--60610757 Score: 286
Period size: 47 Copynumber: 4.7 Consensus size: 47
60610526 CCCTTCGGGA
* * * * * * *
60610536 CTTATCAAATTTATACACTTTCACATCCATCACGTTGGCCACTCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
* *
60610584 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60610630 CTTGTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60610677 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
60610725 CTTATCACATATATATACACTTTCACATTCATC
1 CTTATCAC--ATATATACACTTTCACATTCATC
60610758 GCGTAAAATC
Statistics
Matches: 158, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
46 2 0.01
47 89 0.56
48 32 0.20
49 33 0.21
50 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60612656 original size:31 final size:29
Alignment explanation
Indices: 60612570--60612701 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
60612560 GTGACGAGAT
60612570 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
60612599 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** * *
60612628 TGGCACTAAAAGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
60612657 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
60612686 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
60612702 GGCTTAAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:60620551 original size:31 final size:29
Alignment explanation
Indices: 60620465--60620596 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
60620455 GTGACGAGAT
60620465 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
60620494 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** * *
60620523 TGGCACTAAAAGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
60620552 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
60620581 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
60620597 GGCTTAAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:60624171 original size:48 final size:48
Alignment explanation
Indices: 60624073--60624234 Score: 128
Period size: 48 Copynumber: 3.4 Consensus size: 48
60624063 GGGGTGTCAC
* * * * * * * * * *
60624073 AGACCATGTCTGGGACATGGCATCGGCATCGATATGAGACCCTGTATA
1 AGACCATATCTGGGACATAGCATAGACGTTGATATGTGAGCCAGTGTA
* * *
60624121 AGACCATATCTTGGATATAGCATTAG-CGTTGATATTTGAGCCAGTGTA
1 AGACCATATCTGGGACATAGCA-TAGACGTTGATATGTGAGCCAGTGTA
* * * * *
60624169 AGACCATGTCTGGGACATGGCATCGATGTTGATATGTGAGGCAGTGTA
1 AGACCATATCTGGGACATAGCATAGACGTTGATATGTGAGCCAGTGTA
* *
60624217 AGACCATGTCTGAGACAT
1 AGACCATATCTGGGACAT
60624235 TGTAATAGCC
Statistics
Matches: 91, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
47 2 0.02
48 87 0.96
49 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
AGACCATATCTGGGACATAGCATAGACGTTGATATGTGAGCCAGTGTA
Found at i:60625883 original size:68 final size:66
Alignment explanation
Indices: 60625811--60625982 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
60625801 CATCATGTGT
* * * *
60625811 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
60625874 TGTAG
62 TGTAG
** * *
60625879 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
60625944 AG
65 AG
* * * *
60625946 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
60625983 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:60625916 original size:64 final size:64
Alignment explanation
Indices: 60625835--60626018 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
60625825 AGACATTATG
* * *
60625835 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
60625899 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
60625964 AA
63 AA
* * *
60625966 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
60626019 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:60630303 original size:68 final size:66
Alignment explanation
Indices: 60630231--60630402 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
60630221 CATCATGTGT
* * * *
60630231 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
60630294 TGTAG
62 TGTAG
** * *
60630299 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
60630364 AG
65 AG
* * * *
60630366 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
60630403 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:60630336 original size:64 final size:64
Alignment explanation
Indices: 60630255--60630438 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
60630245 AGACATTATG
* * *
60630255 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
60630319 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
60630384 AA
63 AA
* * *
60630386 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
60630439 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:60632226 original size:48 final size:47
Alignment explanation
Indices: 60632170--60632277 Score: 128
Period size: 48 Copynumber: 2.3 Consensus size: 47
60632160 GGGTGTTACA
* * * *
60632170 GACATGGCATC-AATGTGGATATGTGAGCTAGTGTAAGACCATGTCTGG
1 GACATGGCATCGAA-CT-GATATGTGAGCTACTGTAAGACCATATATGG
* *
60632218 GACATGGCATCGGCACTGATATGTGAGCTACTTTAAGACCATATATGG
1 GACATGGCATC-GAACTGATATGTGAGCTACTGTAAGACCATATATGG
60632266 GACATGGCATCG
1 GACATGGCATCG
60632278 GCACTAACAT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
47 1 0.02
48 49 0.94
49 1 0.02
50 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (47 bp):
GACATGGCATCGAACTGATATGTGAGCTACTGTAAGACCATATATGG
Found at i:60632278 original size:48 final size:48
Alignment explanation
Indices: 60632187--60632282 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
60632177 CATCAATGTG
* * *
60632187 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT
1 GATATGTGAGCTACTGTAAGACCATATATGGGACATGGCATCGGCACT
*
60632235 GATATGTGAGCTACTTTAAGACCATATATGGGACATGGCATCGGCACT
1 GATATGTGAGCTACTGTAAGACCATATATGGGACATGGCATCGGCACT
60632283 AACATGAGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
GATATGTGAGCTACTGTAAGACCATATATGGGACATGGCATCGGCACT
Found at i:60632303 original size:48 final size:48
Alignment explanation
Indices: 60632194--60632309 Score: 124
Period size: 48 Copynumber: 2.4 Consensus size: 48
60632184 GTGGATATGT
* * * * * * *
60632194 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATATGT
1 GAGCTACTATAAGACCATATATGGGACATGGCATCGGCACTAACATGA
*
60632242 GAGCTACTTTAAGACCATATATGGGACATGGCATCGGCACTAACATGA
1 GAGCTACTATAAGACCATATATGGGACATGGCATCGGCACTAACATGA
** **
60632290 GATTTTGTATAAGACCATAT
1 GAGCTACTATAAGACCATAT
60632310 CCAAAATATG
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (48 bp):
GAGCTACTATAAGACCATATATGGGACATGGCATCGGCACTAACATGA
Found at i:60634323 original size:20 final size:20
Alignment explanation
Indices: 60634286--60634323 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60634276 GACCACATGG
* *
60634286 CCTATCCACATGGGCGTGCC
1 CCTATCCACACGGACGTGCC
60634306 CCTATCCACACGGACGTG
1 CCTATCCACACGGACGTG
60634324 TGGCCCTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.39, G:0.24, T:0.18
Consensus pattern (20 bp):
CCTATCCACACGGACGTGCC
Found at i:60643338 original size:43 final size:43
Alignment explanation
Indices: 60643290--60643437 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 43
60643280 GTTATCGAGA
* * * *
60643290 TGTGATTACATGAAAGACCATGTCTGGGACATTGGTATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT
* * *
60643333 TGTGATT--GTGTAAGACCATGTCTGGGACACTGGCATCATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT
* * * * *
60643374 TATGATTTCGTGTAAGACCCTGTCTAGGACAATGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT
*
60643416 ATGTGATGACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
60643438 ATCTAGGATA
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
41 34 0.40
42 2 0.02
43 50 0.58
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT
Found at i:60643350 original size:41 final size:43
Alignment explanation
Indices: 60643303--60643417 Score: 135
Period size: 41 Copynumber: 2.7 Consensus size: 43
60643293 GATTACATGA
* * ** *
60643303 AAGACCATGTCTGGGACATTGGTATTGTATTGTGA-TT-GTGT
1 AAGACCATGTCTGGGACACTGGCATCATATTATGATTTCGTGT
60643344 AAGACCATGTCTGGGACACTGGCATCATATTATGATTTCGTGT
1 AAGACCATGTCTGGGACACTGGCATCATATTATGATTTCGTGT
* * *
60643387 AAGACCCTGTCTAGGACAATGGCATCGATAT
1 AAGACCATGTCTGGGACACTGGCATC-ATAT
60643418 GTGATGACAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 30 0.48
42 2 0.03
43 27 0.43
44 4 0.06
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
AAGACCATGTCTGGGACACTGGCATCATATTATGATTTCGTGT
Found at i:60643443 original size:43 final size:43
Alignment explanation
Indices: 60643341--60643453 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
60643331 ATTGTGATTG
* * ** *
60643341 TGTAAGACCATGTCTGGGACACTGGCATCATATTATGATTTCG
1 TGTAAGACCATGTCTAGGACAATGGCATCATATTATGATGACA
* *
60643384 TGTAAGACCCTGTCTAGGACAATGGCATCGATA-TGTGATGACA
1 TGTAAGACCATGTCTAGGACAATGGCATC-ATATTATGATGACA
* *
60643427 TGTAAGACCATATCTAGGA-TATGGCAT
1 TGTAAGACCATGTCTAGGACAATGGCAT
60643454 TGTGTGAACT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 7 0.12
43 49 0.83
44 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAATGGCATCATATTATGATGACA
Found at i:60647314 original size:15 final size:15
Alignment explanation
Indices: 60647282--60647310 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
60647272 ATTTTCTGTG
60647282 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
60647297 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
60647311 ATTTGCTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:60647458 original size:81 final size:80
Alignment explanation
Indices: 60647350--60647510 Score: 295
Period size: 81 Copynumber: 2.0 Consensus size: 80
60647340 TGATTAAATA
*
60647350 AAAGGACCTAATCGCGTAAAATTAAAATTTGGTGGTTATTTCTAAAAAGGGGCGAATTGATGATG
1 AAAGGACCTAATCGCGTAAAATTAAAATTTGGTGGTTATTTCTAAAAAGGGGCAAATTGATGATG
*
60647415 TTTTTATTTGATGATG
66 -TTTTATTTCATGATG
60647431 AAAGGACCTAATCGCGTAAAATTAAAATTTGGTGGTTATTTCTAAAAAGGGGCAAATTGATGATG
1 AAAGGACCTAATCGCGTAAAATTAAAATTTGGTGGTTATTTCTAAAAAGGGGCAAATTGATGATG
60647496 TTTTATTTCATGATG
66 TTTTATTTCATGATG
60647511 TATTTATGTT
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
80 14 0.18
81 64 0.82
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.35
Consensus pattern (80 bp):
AAAGGACCTAATCGCGTAAAATTAAAATTTGGTGGTTATTTCTAAAAAGGGGCAAATTGATGATG
TTTTATTTCATGATG
Found at i:60653494 original size:22 final size:22
Alignment explanation
Indices: 60653466--60653541 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
60653456 AGATATATAT
60653466 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
60653488 ATGTGATGAATGTGAAAGTGTATAG
1 ATGTGAT-AAGGCCTAA-TG-GCCG
60653513 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
60653535 ATGTGAT
1 ATGTGAT
60653542 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:60653520 original size:47 final size:47
Alignment explanation
Indices: 60653461--60653551 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
60653451 GTATGAGATA
*
60653461 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATAGATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
60653508 TATAGATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATAGATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
60653552 TATATGTGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATAGATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:60653598 original size:48 final size:48
Alignment explanation
Indices: 60653543--60653694 Score: 232
Period size: 48 Copynumber: 3.2 Consensus size: 48
60653533 CGATGTGATG
* * *
60653543 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGGCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* * ** *
60653591 AATGTGAAACATATATAAGATATGTGTATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
60653639 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
60653687 AATGTGAA
1 AATGTGAA
60653695 TGTTGTAATA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:60653794 original size:37 final size:37
Alignment explanation
Indices: 60653739--60653861 Score: 201
Period size: 37 Copynumber: 3.3 Consensus size: 37
60653729 GGAAATATAT
* *
60653739 TCCGGGTGAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
60653776 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60653813 TCCGGGTAAGACCCGTTGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60653850 TTCGGGTAAGAC
1 TCCGGGTAAGAC
60653862 TTCGTAATAA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60661672 original size:368 final size:368
Alignment explanation
Indices: 60660988--60661723 Score: 1427
Period size: 368 Copynumber: 2.0 Consensus size: 368
60660978 AAGGAACTCT
*
60660988 TTGCTATAGTTTTTGCTTTTGAAAAATTTCGCTCATATCTTATATGTACCAAAGTTATAGTTTTT
1 TTGCTATAGTTTTTGCTTTTGAAAAATTTCGCTCATATCTTATATGTACCAAAGTTATAGTATTT
60661053 ACTGACCATGCAGCCATTAAATACTTGCTCACGAAGAAAGATACAAAACGGAGGCTAATTCATTG
66 ACTGACCATGCAGCCATTAAATACTTGCTCACGAAGAAAGATACAAAACGGAGGCTAATTCATTG
*
60661118 GATACTACTACTCAATCATGTGTGCCTATCAATGAGAATTTCCCAGATGAACTCTTATTTGAGGT
131 GATACTACTACTCAATCATGTGTGCCTATCAATGAGAATTTCCCAGATGAACACTTATTTGAGGT
60661183 AAGTCGAATTCATGAAACATCTTGGTTTGCTGATTTTGCCAATTATCTTGCATGTGGAATAATTC
196 AAGTCGAATTCATGAAACATCTTGGTTTGCTGATTTTGCCAATTATCTTGCATGTGGAATAATTC
*
60661248 CTCGAGAAATGACATACCAGCAAAGGAAAAAATTCCTTCATGACAGTCGGTATTATTTTTGGGAA
261 CTCGAGAAATGACATACCAGCAAAGGAAAAAATTCCTTCATGACAGTCGATATTATTTTTGGGAA
*
60661313 GATCCATTTTTGTTTAAACAGTGTGCACATAATATAATCCGAA
326 GATCCATTTTTGTTTAAACAATGTGCACATAATATAATCCGAA
*
60661356 TTGCTATAGTTTTTGCTTTTGACAAATTTCGCTCATATCTTATATGTACCAAAGTTATAGTATTT
1 TTGCTATAGTTTTTGCTTTTGAAAAATTTCGCTCATATCTTATATGTACCAAAGTTATAGTATTT
60661421 ACTGACCATGCAGCCATTAAATACTTGCTCACGAAGAAAGATACAAAACGGAGGCTAATTCATTG
66 ACTGACCATGCAGCCATTAAATACTTGCTCACGAAGAAAGATACAAAACGGAGGCTAATTCATTG
60661486 GATACTACTACTCAATCATGTGTGCCTATCAATGAGAATTTCCCAGATGAACACTTATTTGAGGT
131 GATACTACTACTCAATCATGTGTGCCTATCAATGAGAATTTCCCAGATGAACACTTATTTGAGGT
60661551 AAGTCGAATTCATGAAACATCTTGGTTTGCTGATTTTGCCAATTATCTTGCATGTGGAATAATTC
196 AAGTCGAATTCATGAAACATCTTGGTTTGCTGATTTTGCCAATTATCTTGCATGTGGAATAATTC
60661616 CTCGAGAAATGACATACCAGCAAAGGAAAAAATTCCTTCATGACAGTCGATATTATTTTTGGGAA
261 CTCGAGAAATGACATACCAGCAAAGGAAAAAATTCCTTCATGACAGTCGATATTATTTTTGGGAA
60661681 GATCCATTTTTGTTTAAACAATGTGCACATAATATAATCCGAA
326 GATCCATTTTTGTTTAAACAATGTGCACATAATATAATCCGAA
60661724 AGTGTGTAGC
Statistics
Matches: 363, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
368 363 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (368 bp):
TTGCTATAGTTTTTGCTTTTGAAAAATTTCGCTCATATCTTATATGTACCAAAGTTATAGTATTT
ACTGACCATGCAGCCATTAAATACTTGCTCACGAAGAAAGATACAAAACGGAGGCTAATTCATTG
GATACTACTACTCAATCATGTGTGCCTATCAATGAGAATTTCCCAGATGAACACTTATTTGAGGT
AAGTCGAATTCATGAAACATCTTGGTTTGCTGATTTTGCCAATTATCTTGCATGTGGAATAATTC
CTCGAGAAATGACATACCAGCAAAGGAAAAAATTCCTTCATGACAGTCGATATTATTTTTGGGAA
GATCCATTTTTGTTTAAACAATGTGCACATAATATAATCCGAA
Found at i:60669230 original size:24 final size:24
Alignment explanation
Indices: 60669202--60669253 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
60669192 GCGCAGATGG
60669202 CTTGAGTTATTGAAAGATTATGAT
1 CTTGAGTTATTGAAAGATTATGAT
60669226 CTTGAGTTATTGAAAGATTATGAT
1 CTTGAGTTATTGAAAGATTATGAT
60669250 CTTG
1 CTTG
60669254 TCATTGACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (24 bp):
CTTGAGTTATTGAAAGATTATGAT
Found at i:60671577 original size:20 final size:21
Alignment explanation
Indices: 60671544--60671586 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
60671534 GGACTAAAAT
60671544 AAAAAGTTCCAAAATTTGATG
1 AAAAAGTTCCAAAATTTGATG
* *
60671565 AAAAA-TTCTAAAATTTTATG
1 AAAAAGTTCCAAAATTTGATG
60671585 AA
1 AA
60671587 TAATGTGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (21 bp):
AAAAAGTTCCAAAATTTGATG
Found at i:60674872 original size:40 final size:40
Alignment explanation
Indices: 60674809--60675015 Score: 168
Period size: 40 Copynumber: 5.2 Consensus size: 40
60674799 ATTATTGATG
** * *
60674809 ATTGCACATAGGTGCCCTTGTTTGTACTTCTGTACCCCTA
1 ATTGCACATACATGCCCATGTTTGTAATTCTGTACCCCTA
* * * * *
60674849 ATTGCACATACATGCTCACGTTTGTAATTCAGTGCCCCTG
1 ATTGCACATACATGCCCATGTTTGTAATTCTGTACCCCTA
* * * *
60674889 ATTACATATACATGCCCATGTTTATAATT-TGGTACCCCTG
1 ATTGCACATACATGCCCATGTTTGTAATTCT-GTACCCCTA
*
60674929 ATTGCACATACATGCCC-TAGTTTGTAGTT-TGGTACCCCTA
1 ATTGCACATACATGCCCAT-GTTTGTAATTCT-GTACCCCTA
* * * * * * *
60674969 AATGCACATACGTGCCCTTATTTGTACTTCGGTACCACTA
1 ATTGCACATACATGCCCATGTTTGTAATTCTGTACCCCTA
*
60675009 AATGCAC
1 ATTGCAC
60675016 CTACGTTCCC
Statistics
Matches: 136, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 134 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (40 bp):
ATTGCACATACATGCCCATGTTTGTAATTCTGTACCCCTA
Found at i:60674905 original size:80 final size:80
Alignment explanation
Indices: 60674821--60675015 Score: 196
Period size: 80 Copynumber: 2.4 Consensus size: 80
60674811 TGCACATAGG
* *
60674821 TGCCCTTGTTTGTACTTCTGTACCCCTAATTGCACATACATGCTC-ACGTTTGTAATTCAGTGCC
1 TGCCCTTGTTTGTACTTCTGTACCCCTAATTGCACATACATGCCCTA-GTTTGTAATTCAGTACC
* * *
60674885 CCTGATTACATATACA
65 CCTAAATACACATACA
* * * * * **
60674901 TGCCCATGTTTATAATT-TGGTACCCCTGATTGCACATACATGCCCTAGTTTGTAGTTTGGTACC
1 TGCCCTTGTTTGTACTTCT-GTACCCCTAATTGCACATACATGCCCTAGTTTGTAATTCAGTACC
* *
60674965 CCTAAATGCACATACG
65 CCTAAATACACATACA
* * * *
60674981 TGCCCTTATTTGTACTTCGGTACCACTAAATGCAC
1 TGCCCTTGTTTGTACTTCTGTACCCCTAATTGCAC
60675016 CTACGTTCCC
Statistics
Matches: 90, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
79 1 0.01
80 88 0.98
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (80 bp):
TGCCCTTGTTTGTACTTCTGTACCCCTAATTGCACATACATGCCCTAGTTTGTAATTCAGTACCC
CTAAATACACATACA
Found at i:60676530 original size:40 final size:40
Alignment explanation
Indices: 60676483--60676576 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
60676473 CTCAATATTG
* *
60676483 CACACTTAGTGCCATATATAGCCGAAGCT-ATTCCAATTCA
1 CACACTTAGTGCCATATATAACCGAAGCTGATT-CAAATCA
* * * *
60676523 CACACTTAGTGCTATTTATAACCGAAGCTGCTTCAAATCT
1 CACACTTAGTGCCATATATAACCGAAGCTGATTCAAATCA
60676563 CACACTTAGTGCCA
1 CACACTTAGTGCCA
60676577 AACATAGTCC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.29
Consensus pattern (40 bp):
CACACTTAGTGCCATATATAACCGAAGCTGATTCAAATCA
Found at i:60680637 original size:13 final size:13
Alignment explanation
Indices: 60680619--60680645 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
60680609 GAAGTAATCG
60680619 CACACGGGCGTGT
1 CACACGGGCGTGT
60680632 CACACGGGCGTGT
1 CACACGGGCGTGT
60680645 C
1 C
60680646 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:60688512 original size:31 final size:31
Alignment explanation
Indices: 60688474--60688537 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
60688464 CCTTTTCATA
*
60688474 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
60688505 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
60688536 TT
1 TT
60688538 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:60688887 original size:23 final size:23
Alignment explanation
Indices: 60688754--60688924 Score: 216
Period size: 25 Copynumber: 7.1 Consensus size: 23
60688744 CCTAGCCTCT
* * *
60688754 TTTAGTAACTGAGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
60688777 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
60688801 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
*
60688826 TTCATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCC
60688851 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
60688876 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
60688899 TTTAATAACTGGGACATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
60688922 TTT
1 TTT
60688925 TGCACTTCCT
Statistics
Matches: 136, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
23 47 0.35
24 19 0.14
25 70 0.51
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:60688997 original size:9 final size:9
Alignment explanation
Indices: 60688983--60689039 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
60688973 ATCTCATGTT
60688983 CATATCATA
1 CATATCATA
*
60688992 CATATCATGTG
1 CATATCA--TA
60689003 CATATCATA
1 CATATCATA
* *
60689012 CATGTCATGTG
1 CATATCA--TA
60689023 CATATCATA
1 CATATCATA
60689032 CATATCAT
1 CATATCAT
60689040 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:60688999 original size:20 final size:20
Alignment explanation
Indices: 60688971--60689041 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
60688961 GCATTTATAA
* *
60688971 ACATCTCATGTTCATATCAT
1 ACATATCATGTGCATATCAT
60688991 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
60689011 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
60689031 ACATATCATGT
1 ACATATCATGT
60689042 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:60689124 original size:25 final size:25
Alignment explanation
Indices: 60689078--60689125 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
60689068 ATATTTAAAC
* * *
60689078 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
*
60689103 CCTAGGGGCAAAACGGTTATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60689126 CATGTTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60690382 original size:27 final size:27
Alignment explanation
Indices: 60690282--60690365 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
60690272 GGGCATATTC
* *
60690282 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
60690309 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
60690336 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
60690363 GTC
1 GTC
60690366 TTTTTACCTA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:60690461 original size:27 final size:27
Alignment explanation
Indices: 60690426--60690509 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
60690416 GTAAATCTAC
60690426 AACCAAAGGTATTTCAGTAATTTTGTA
1 AACCAAAGGTATTTCAGTAATTTTGTA
60690453 AACCAAAGGTATTTCTA-TAATTTT-TAA
1 AACCAAAGGTATTTC-AGTAATTTTGT-A
* * * *
60690480 AAGTCAAGGGTATTTCTGTAACTTTGTA
1 AA-CCAAAGGTATTTCAGTAATTTTGTA
60690508 AA
1 AA
60690510 TCAGGGGTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
26 1 0.02
27 25 0.52
28 21 0.44
29 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (27 bp):
AACCAAAGGTATTTCAGTAATTTTGTA
Found at i:60690492 original size:28 final size:27
Alignment explanation
Indices: 60690433--60690521 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
60690423 TACAACCAAA
* * *
60690433 GGTATTTC-AGTAATTTTGTAAACCAAA
1 GGTATTTCTA-TAACTTTGTAAATCAAG
*
60690460 GGTATTTCTATAA-TTTTTAAAAGTCAAG
1 GGTATTTCTATAACTTTGT-AAA-TCAAG
* *
60690488 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTATAACTTTGTAAATCAAG
60690515 GGTATTT
1 GGTATTT
60690522 TGGTAATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.08
27 25 0.48
28 19 0.37
29 4 0.08
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (27 bp):
GGTATTTCTATAACTTTGTAAATCAAG
Found at i:60690527 original size:27 final size:26
Alignment explanation
Indices: 60690507--60690691 Score: 137
Period size: 27 Copynumber: 6.9 Consensus size: 26
60690497 GTAACTTTGT
60690507 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAA-TTTAC
* *
60690534 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTT-AC
* *
60690561 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAA-TTTAC
60690588 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAA-TTTAC
* *
60690615 AAAT-TGAGGGTATTTTTGTAATTTTAC
1 AAATCAG-GGGTATTTTGGTAA-TTTAC
* * * *
60690642 AAACCAAGGGTATTTTAGCAATTTTAC
1 AAATCAGGGGTATTTTGGTAA-TTTAC
* *
60690669 AGA-CTA-GGGTATTTTAGTAATTT
1 AAATC-AGGGGTATTTTGGTAATTT
60690692 TGTAAATCGA
Statistics
Matches: 133, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
25 3 0.02
26 20 0.15
27 106 0.80
28 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (26 bp):
AAATCAGGGGTATTTTGGTAATTTAC
Found at i:60690529 original size:55 final size:54
Alignment explanation
Indices: 60690433--60690692 Score: 160
Period size: 54 Copynumber: 4.8 Consensus size: 54
60690423 TACAACCAAA
* *
60690433 GGTATTTCAGTAATTTTGTAAACCAAAGGTATTTCT-ATAATTTTTA-AAAGTCAAG
1 GGTATTTCAGTAA-TTTGTAAACCAGAGGTATTT-TGGTAATTTTTACAAA-TCAAG
* * * **
60690488 GGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAA-TTTTACAAATTGAG
1 GGTATTTCAGTAA-TTTGTAAACCAGAGGTATTTTGGTAATTTTTACAAATCAAG
* ** * *
60690542 GGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAA-TTTTACAAA-CTAGG
1 GGTATTTCAGTAATTT-GTAAACCAGAGGTATTTTGGTAATTTTTACAAATC-AAG
** *** * *
60690596 GGTATTTTGGTAATTT-TACAAATTGAGGGTATTTTTGTAA-TTTTACAAACCAAG
1 GGTATTTCAGTAATTTGTA-AACCAGA-GGTATTTTGGTAATTTTTACAAATCAAG
* * * *
60690650 GGTATTTTAGCAATTT-TACAGACTAG-GGTATTTTAGTAATTTT
1 GGTATTTCAGTAATTTGTA-A-ACCAGAGGTATTTTGGTAATTTT
60690693 GTAAATCGAG
Statistics
Matches: 167, Mismatches: 29, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
52 1 0.01
53 18 0.11
54 109 0.65
55 39 0.23
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (54 bp):
GGTATTTCAGTAATTTGTAAACCAGAGGTATTTTGGTAATTTTTACAAATCAAG
Found at i:60690573 original size:54 final size:53
Alignment explanation
Indices: 60690514--60690706 Score: 199
Period size: 54 Copynumber: 3.6 Consensus size: 53
60690504 TGTAAATCAG
** * *
60690514 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACCA
* **
60690567 GTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACCGA-GGGTATTTTGGTAATTTTACAAA-CCA
* * * * * *
60690622 GGGTATTTTTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACCA
* ** *
60690675 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTA
60690707 AAACAGTAAT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
53 30 0.25
54 84 0.71
55 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACCA
Found at i:60690607 original size:81 final size:81
Alignment explanation
Indices: 60690512--60690706 Score: 277
Period size: 81 Copynumber: 2.4 Consensus size: 81
60690502 TTTGTAAATC
60690512 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATTT
* *
60690576 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
** *
60690593 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
*
60690658 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* ** *
60690674 A-GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
60690707 AAACAGTAAT
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
80 28 0.27
81 73 0.71
82 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:60690714 original size:27 final size:27
Alignment explanation
Indices: 60690684--60690841 Score: 201
Period size: 27 Copynumber: 5.9 Consensus size: 27
60690674 AGGGTATTTT
*
60690684 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
60690711 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
60690738 AATAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
60690765 GGTACTTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
60690792 AGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
60690819 -GATAATTATGTAAATCGGGGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
60690842 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 114 0.99
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:60690730 original size:80 final size:81
Alignment explanation
Indices: 60690512--60690733 Score: 216
Period size: 81 Copynumber: 2.8 Consensus size: 81
60690502 TTTGTAAATC
* * *** *
60690512 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATT-TCACAAACC-AGTGGTATT
1 AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-ACAAACCAAG-GGTATT
* *
60690575 TTGGTAATTTTACAAACT
64 TTAGCAATTTTACAAACT
* * ***** *
60690593 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
*
60690658 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
** * *
60690674 A-GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
1 AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTA
60690734 AAACAATAAT
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 47 0.39
81 72 0.59
82 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:60690864 original size:81 final size:79
Alignment explanation
Indices: 60690674--60690866 Score: 197
Period size: 81 Copynumber: 2.4 Consensus size: 79
60690664 TTTACAGACT
* *
60690674 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
1 AGGGTAATTTGGTAA-TTT-TAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
*
60690739 ATAATTCTATAAATCA
64 ATAATTATATAAATCA
*** * * * * *
60690755 AGGGTAAAACGGTACTTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAGTCGAGGGTAAAACG
1 AGGGTAATTTGGTAATT-T-TAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
* *
60690820 ATAATTATGTAAATCG
64 ATAATTATATAAATCA
* *
60690836 GGGGTACTTTGGTAATTTTACAAGTCGAGGG
1 AGGGTAATTTGGTAATTTTA-AA-TCGAGGG
60690867 ATTTCAATAA
Statistics
Matches: 90, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.02
80 5 0.06
81 83 0.92
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (79 bp):
AGGGTAATTTGGTAATTTTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAAT
AATTATATAAATCA
Found at i:60693642 original size:30 final size:31
Alignment explanation
Indices: 60693586--60693648 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
60693576 CCTTTTCATA
60693586 TTTCAGATTTCATAACACTGGGCCGAAGCCT
1 TTTCAGATTTCATAACACTGGGCCGAAGCCT
* **
60693617 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCAGATTTCATAACACTGGGCCGAAGCCT
60693647 TT
1 TT
60693649 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCAGATTTCATAACACTGGGCCGAAGCCT
Found at i:60693898 original size:24 final size:23
Alignment explanation
Indices: 60693855--60693985 Score: 172
Period size: 25 Copynumber: 5.4 Consensus size: 23
60693845 CTAGAGGCCT
*
60693855 AGCCTCTTTTAGTAACTGGGGCAAA
1 AGCC-CTTTTA-TAACTGGGGCATA
60693880 AGCCCTGTTTATAACTGGGGCATA
1 AGCCCT-TTTATAACTGGGGCATA
*
60693904 AGCCCTTTATCATAATTGGGGCATA
1 AGCCCTTT-T-ATAACTGGGGCATA
60693929 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-T-ATAACTGGGGCATA
*
60693954 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTATAACTGGGGCATA
60693977 AGCCCTTTT
1 AGCCCTTTT
60693986 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
23 24 0.24
24 21 0.21
25 53 0.54
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (23 bp):
AGCCCTTTTATAACTGGGGCATA
Found at i:60693953 original size:50 final size:46
Alignment explanation
Indices: 60693862--60693985 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 46
60693852 CCTAGCCTCT
* *
60693862 TTTAGTAACTGGGGCAAAAGCCCTGTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCT-TTTATAACTGGGGCATAAGCCC
*
60693909 TTTATCATAATTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCCTTT-T-ATAACTGGGGCATAAGCCC
60693959 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
60693986 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
47 5 0.07
48 23 0.33
49 18 0.26
50 23 0.33
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCC
Found at i:60694056 original size:9 final size:9
Alignment explanation
Indices: 60694042--60694098 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
60694032 ATCTCATGTG
60694042 CATATCATA
1 CATATCATA
*
60694051 CATATCATGTG
1 CATATCA--TA
60694062 CATATCATA
1 CATATCATA
* *
60694071 CATGTCATGTG
1 CATATCA--TA
60694082 CATATCATA
1 CATATCATA
60694091 CATATCAT
1 CATATCAT
60694099 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:60694058 original size:20 final size:20
Alignment explanation
Indices: 60694030--60694100 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
60694020 GCATTTATGA
*
60694030 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
60694050 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
60694070 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
60694090 ACATATCATGT
1 ACATATCATGT
60694101 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:60694065 original size:11 final size:11
Alignment explanation
Indices: 60694035--60694089 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
60694025 TATGAACATC
60694035 TCATGTGCATA
1 TCATGTGCATA
*
60694046 TCA--TACATA
1 TCATGTGCATA
60694055 TCATGTGCATA
1 TCATGTGCATA
* *
60694066 TCA--TACATG
1 TCATGTGCATA
60694075 TCATGTGCATA
1 TCATGTGCATA
60694086 TCAT
1 TCAT
60694090 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:60694165 original size:25 final size:25
Alignment explanation
Indices: 60694137--60694184 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60694127 ATATATAAAC
* * *
60694137 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
60694162 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60694185 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60695407 original size:27 final size:27
Alignment explanation
Indices: 60695316--60695399 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
60695306 GGGCATATTC
* *
60695316 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
60695343 GTCACTTTACCCTAAAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
60695370 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
60695397 GTC
1 GTC
60695400 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:60695415 original size:27 final size:27
Alignment explanation
Indices: 60695316--60695416 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
60695306 GGGCATATTC
* * *
60695316 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTAAAGGGGCT-TTACG
60695343 GTCACTTTACCCTAAAGGGGCTTTACG
1 GTCACTTTACCCTAAAGGGGCTTTACG
*
60695370 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTAAAGGGGCTTTACG
**
60695397 GTCTTTTTA-CCTAATAGGGG
1 GTCACTTTACCCTAA-AGGGG
60695417 TATTTTAGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 4 0.06
27 60 0.92
28 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCCTAAAGGGGCTTTACG
Found at i:60695512 original size:27 final size:27
Alignment explanation
Indices: 60695461--60695511 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
60695451 GTAAATCTAC
60695461 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
60695488 AAACC-AAGGTATTTCTA-TAATTTT
1 AAACCAAAGGTATTTC-AGTAATTTT
60695512 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:60695677 original size:26 final size:27
Alignment explanation
Indices: 60695550--60695727 Score: 218
Period size: 27 Copynumber: 6.7 Consensus size: 27
60695540 TGTAAATCAG
* *
60695550 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTAA
* *
60695577 GGGTATTTTGGTAATTTCACAAAC-CA
1 GGGTATTTTGGTAATTTTACAAACTAA
60695603 GTGGTATTTTGGTAATTTTACAAACTAA
1 G-GGTATTTTGGTAATTTTACAAACTAA
* *
60695631 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTAA
*
60695658 GGGTATTTT-GTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
*** *
60695684 GGGTATTTTAACAATTTTACAGACT-A
1 GGGTATTTTGGTAATTTTACAAACTAA
*
60695710 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
60695728 GTAAATCGAG
Statistics
Matches: 132, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
26 42 0.32
27 88 0.67
28 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:60695778 original size:27 final size:27
Alignment explanation
Indices: 60695719--60695873 Score: 156
Period size: 27 Copynumber: 5.9 Consensus size: 27
60695709 AGGGTATTTT
* *
60695719 AGTAATTTTGTAAATCGA-GGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
60695745 AGCAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
60695772 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
60695799 GGTACTTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
60695826 GGTAATTCTGT-AAGCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
60695852 -GTTAATTATGTAAATCG-GGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
60695874 CTTTGGTAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
25 1 0.01
26 42 0.39
27 65 0.60
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:60700513 original size:49 final size:49
Alignment explanation
Indices: 60700460--60700827 Score: 506
Period size: 49 Copynumber: 7.7 Consensus size: 49
60700450 GATTTTACGC
* * * *
60700460 GATGAATGTGAATGTGCATATATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
*
60700509 GATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
60700558 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
* *
60700607 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAACGGCCAAAGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
*
60700654 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
* * *
60700703 GATGAATGTG-AAG-GTGTATATATGTGACAAGGCCGAATGGCC-AATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GT
* * *
60700750 GATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCC-AACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GT
60700797 GAT-AGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGA-ATGTGAAAGTGTATATATATGTGATAAG
60700828 TCTCGAAGGG
Statistics
Matches: 292, Mismatches: 19, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
46 2 0.01
47 133 0.46
48 7 0.02
49 150 0.51
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGT
Found at i:60700658 original size:96 final size:96
Alignment explanation
Indices: 60700460--60700827 Score: 528
Period size: 96 Copynumber: 3.8 Consensus size: 96
60700450 GATTTTACGC
* * * * *
60700460 GATGAATGTGAATGTGCATATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAAAGTG
*
60700525 TATATATATGTGATAAGGCCTAATGGCCGAAGT
66 --TATATATGTGATAAGGCCTAATGGCCAAAGT
60700558 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAAAGTG
*
60700623 TATATATGTGATAAGGCCTAACGGCCAAAGT
66 TATATATGTGATAAGGCCTAATGGCCAAAGT
* *
60700654 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAAAGTG
* * *
60700719 TATATATGTGACAAGGCCGAATGGCCAATGT
66 TATATATGTGATAAGGCCTAATGGCCAAAGT
* * *
60700750 GATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCC-AACGTGAT-AGATGTGAAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GTGATGA-ATGTGAAAG
*
60700811 TGTATAAATGTGATAAG
64 TGTATATATGTGATAAG
60700828 TCTCGAAGGG
Statistics
Matches: 248, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
93 2 0.01
94 51 0.21
96 135 0.54
98 60 0.24
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCAAAGT
Found at i:60703037 original size:8 final size:8
Alignment explanation
Indices: 60703024--60703067 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
60703014 AAATGCTAGA
60703024 ATTTCGGC
1 ATTTCGGC
60703032 ATTTCGGC
1 ATTTCGGC
*
60703040 TTTTCGGC
1 ATTTCGGC
60703048 ATTTCGGC
1 ATTTCGGC
*
60703056 TTTTCGGC
1 ATTTCGGC
60703064 ATTT
1 ATTT
60703068 ATCGCTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.09, C:0.23, G:0.23, T:0.45
Consensus pattern (8 bp):
ATTTCGGC
Found at i:60703046 original size:16 final size:16
Alignment explanation
Indices: 60703025--60703067 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
60703015 AATGCTAGAA
60703025 TTTCGGCATTTCGGCT
1 TTTCGGCATTTCGGCT
60703041 TTTCGGCATTTCGGCT
1 TTTCGGCATTTCGGCT
60703057 TTTCGGCATTT
1 TTTCGGCATTT
60703068 ATCGCTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.07, C:0.23, G:0.23, T:0.47
Consensus pattern (16 bp):
TTTCGGCATTTCGGCT
Found at i:60703814 original size:27 final size:27
Alignment explanation
Indices: 60703778--60703856 Score: 124
Period size: 27 Copynumber: 2.9 Consensus size: 27
60703768 ATACAGGGTA
60703778 TTACGGTCACTTTACCCTAAAGGGGCT
1 TTACGGTCACTTTACCCTAAAGGGGCT
60703805 TTACGGTCACTTTACCCTAAAGGGGCT
1 TTACGGTCACTTTACCCTAAAGGGGCT
**
60703832 TTACGGTCTTTTTA-CCTAATAGGGG
1 TTACGGTCACTTTACCCTAA-AGGGG
60703857 TATTTTAGTC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 5 0.10
27 44 0.90
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTAAAGGGGCT
Found at i:60704014 original size:27 final size:27
Alignment explanation
Indices: 60703936--60704169 Score: 190
Period size: 27 Copynumber: 8.6 Consensus size: 27
60703926 GTAAGCCAAA
* *
60703936 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTACAAA-TCAGG
* * **
60703965 GGTATTTTTGTAACTTTGTAAATCAGG
1 GGTATTTTAGTAATTTTACAAATCAGG
* *
60703992 GGTATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTAGTAATTTTACAAATCAG-G
* * *
60704019 GGTATTTTAGTAATTTCACAAACCAGT
1 GGTATTTTAGTAATTTTACAAATCAGG
* *
60704046 GGTACTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTACAAATC-AGG
* *
60704073 GGTATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTAGTAATTTTACAAATCAG-G
* * *
60704100 GGTATTTTTGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTACAAATCAGG
* * *
60704127 GGTATTTTAGCAATTTTACAGA-CAAG
1 GGTATTTTAGTAATTTTACAAATCAGG
60704153 GGTATTTTAGTAATTTT
1 GGTATTTTAGTAATTTT
60704170 GTAAATCGAG
Statistics
Matches: 169, Mismatches: 29, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
26 23 0.14
27 128 0.76
28 8 0.05
29 10 0.06
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTACAAATCAGG
Found at i:60704055 original size:54 final size:53
Alignment explanation
Indices: 60703854--60704183 Score: 207
Period size: 54 Copynumber: 6.1 Consensus size: 53
60703844 TACCTAATAG
* * ** * * * *
60703854 GGGTATTTTAGTCATTTCATCCTACAAGGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTAGTAATTTTA-CAAACAAGGGTATTTTGGTAATTTTACAAACCGA
* * ** * * * * * *
60703908 AGGTATTTCAGTAATTTTGTAAGCCAAAGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTTTAGTAATTTTACAA-ACAAGGGTATTT-TGGTAA-TTTTACAAA-CCGA
* * * **
60703964 GGGTATTTTTGTAACTTTGTA-AATCAGGGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTAGTAA-TTT-TACAAACAAGGGTATTTTGGTAATTTTACAAACCGA
* * * *
60704018 GGGTATTTTAGTAATTTCACAAACCAGTGGTACTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTAGTAATTTTACAAACAAG-GGTATTTTGGTAATTTTACAAACCGA
* ** * *
60704071 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAA
1 -GGGTATTTTAGTAATTTTACAAA-CAAGGGTATTTTGGTAATTTTACAAACCGA
* * * ** *
60704126 GGGTATTTTAGCAATTTTACAGACAAGGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTACAAACAAGGGTATTTTGGTAATTTTACAAACCGA
60704179 GGGTA
1 GGGTA
60704184 AAACAGAAAT
Statistics
Matches: 212, Mismatches: 52, Indels: 25
0.73 0.18 0.09
Matches are distributed among these distances:
52 1 0.00
53 36 0.17
54 123 0.58
55 20 0.09
56 26 0.12
57 5 0.02
58 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACAAGGGTATTTTGGTAATTTTACAAACCGA
Found at i:60704090 original size:81 final size:80
Alignment explanation
Indices: 60703988--60704183 Score: 268
Period size: 81 Copynumber: 2.4 Consensus size: 80
60703978 CTTTGTAAAT
60703988 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTCACAAACC-AGTGGTACT
1 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTCACAAACCAAG-GGTACT
* *
60704052 TTGGTAATTTTACAAA
65 TTAGCAATTTTACAAA
* * *
60704068 CTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTACAAACCAAGGGTATT
1 C-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTCACAAACCAAGGGTACT
*
60704133 TTAGCAATTTTACAGA
65 TTAGCAATTTTACAAA
* * ** *
60704149 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
60704184 AAACAGAAAT
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
80 30 0.29
81 71 0.69
82 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTCACAAACCAAGGGTACTT
TAGCAATTTTACAAA
Found at i:60704194 original size:27 final size:27
Alignment explanation
Indices: 60704162--60704317 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
60704152 GGGTATTTTA
* *
60704162 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
60704189 GAAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
60704216 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
60704243 GTACTTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
60704270 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
60704297 GTAATTATGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
60704318 CTTTGGTAAT
Statistics
Matches: 112, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 5 0.04
27 107 0.96
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:60707124 original size:30 final size:31
Alignment explanation
Indices: 60707068--60707130 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
60707058 CCTTTTCATA
60707068 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
60707099 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
60707129 TT
1 TT
60707131 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:60707374 original size:24 final size:24
Alignment explanation
Indices: 60707322--60707511 Score: 239
Period size: 24 Copynumber: 8.0 Consensus size: 24
60707312 GCTTTATCAT
*
60707322 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
60707347 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
60707371 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
60707396 ATAACTGGGGCATAAGCCC-TTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
60707419 TATAACTGGGGCATAAGCCCTTTATC
1 -ATAACTGGGGCATAAGCCCTTT-TA
60707445 ATAACTGGGGCATAA-CCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
60707467 ATAA-TGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
60707489 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60707512 GCACTTCCTC
Statistics
Matches: 147, Mismatches: 10, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
21 10 0.07
22 16 0.11
23 16 0.11
24 56 0.38
25 49 0.33
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60707374 original size:49 final size:49
Alignment explanation
Indices: 60707321--60707511 Score: 252
Period size: 49 Copynumber: 4.0 Consensus size: 49
60707311 TGCTTTATCA
* *
60707321 TATAACTGGAGGCCT-AGCCTCTTT-TAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTATAATAACTGGGGCATAAGCCCTTTT
* **
60707370 TATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTCA
1 TATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCCTTTT
*
60707419 TATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAA-CCC-TTT
1 TATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCCTTTT
*
60707466 AATAA-TGGGGCATAAGCCC-TT-TAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCCTTTT
60707512 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
44 16 0.12
45 5 0.04
46 17 0.13
47 5 0.04
48 11 0.09
49 75 0.58
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (49 bp):
TATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCCTTTT
Found at i:60707582 original size:9 final size:9
Alignment explanation
Indices: 60707568--60707624 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
60707558 ATCTCATGTG
60707568 CATATCATA
1 CATATCATA
*
60707577 CATATCATGTG
1 CATATCA--TA
60707588 CATATCATA
1 CATATCATA
* *
60707597 CATGTCATGTG
1 CATATCA--TA
60707608 CATATCATA
1 CATATCATA
60707617 CATATCAT
1 CATATCAT
60707625 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:60707584 original size:20 final size:20
Alignment explanation
Indices: 60707556--60707626 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
60707546 GCATTTATGA
*
60707556 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
60707576 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
60707596 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
60707616 ACATATCATGT
1 ACATATCATGT
60707627 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:60707591 original size:11 final size:11
Alignment explanation
Indices: 60707561--60707615 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
60707551 TATGAACATC
60707561 TCATGTGCATA
1 TCATGTGCATA
*
60707572 TCA--TACATA
1 TCATGTGCATA
60707581 TCATGTGCATA
1 TCATGTGCATA
* *
60707592 TCA--TACATG
1 TCATGTGCATA
60707601 TCATGTGCATA
1 TCATGTGCATA
60707612 TCAT
1 TCAT
60707616 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:60707691 original size:25 final size:25
Alignment explanation
Indices: 60707663--60707710 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60707653 ACATATAAAC
* * *
60707663 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
60707688 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60707711 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60708889 original size:27 final size:27
Alignment explanation
Indices: 60708849--60708920 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
60708839 TCATTTTACA
60708849 TACAGGGG-TATTACGGTCACTTTACCC
1 TACAGGGGCT-TTACGGTCACTTTACCC
60708876 TACAGGGGCTTTACGGTCACTTTACCC
1 TACAGGGGCTTTACGGTCACTTTACCC
*
60708903 TATAGGGGCTTTACGGTC
1 TACAGGGGCTTTACGGTC
60708921 TTTTTACCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 42 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (27 bp):
TACAGGGGCTTTACGGTCACTTTACCC
Found at i:60709011 original size:27 final size:27
Alignment explanation
Indices: 60708981--60709032 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
60708971 GTAAATCTAC
60708981 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
60709008 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
60709033 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:60709094 original size:27 final size:26
Alignment explanation
Indices: 60709068--60709243 Score: 157
Period size: 26 Copynumber: 6.8 Consensus size: 26
60709058 CTTTGTAAAT
60709068 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
** * *
60709094 TTGAGGGTATTTCGGTAATTTCACAAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
*
60709121 CCAGTGGTATTTT-GTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
60709147 CTAGGGGTA-TTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
**
60709173 TTGAGGGTATTTT-GTAATTTT--AAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
* * * *
60709197 CAAGGGTATTTTAGCAATTTTACAGA
1 CAGGGGTATTTTGGTAATTTTACAAA
*
60709223 CTA-GGGTATTTTAGTAATTTT
1 C-AGGGGTATTTTGGTAATTTT
60709244 GTAAATCGAG
Statistics
Matches: 122, Mismatches: 18, Indels: 20
0.76 0.11 0.12
Matches are distributed among these distances:
23 9 0.07
24 10 0.08
25 5 0.04
26 65 0.53
27 32 0.26
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:60709145 original size:26 final size:25
Alignment explanation
Indices: 60709043--60709243 Score: 154
Period size: 26 Copynumber: 7.7 Consensus size: 25
60709033 TAGAAAGTCA
* ** *
60709043 AGGGTATTTCTGTAACTTTGTAAATC
1 AGGGTATTT-TGTAATTTTACAAACC
**
60709069 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTT-GTAATTTTACAAA-CC
* *
60709097 AGGGTATTTCGGTAATTTCACAAACC
1 AGGGTATTT-TGTAATTTTACAAACC
*
60709123 AGTGGTATTTTGTAATTTTACAAACT
1 AG-GGTATTTTGTAATTTTACAAACC
* **
60709149 AGGGGTATTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGTAATTTTACAAA-CC
*
60709176 AGGGTATTTTGTAATTTT--AAACA
1 AGGGTATTTTGTAATTTTACAAACC
* * *
60709199 AGGGTATTTTAGCAATTTTACAGACT
1 AGGGTATTTT-GTAATTTTACAAACC
60709225 AGGGTATTTTAGTAATTTT
1 AGGGTATTTT-GTAATTTT
60709244 GTAAATCGAG
Statistics
Matches: 144, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
23 10 0.07
24 10 0.07
26 75 0.52
27 47 0.33
28 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (25 bp):
AGGGTATTTTGTAATTTTACAAACC
Found at i:60709267 original size:27 final size:27
Alignment explanation
Indices: 60709236--60709388 Score: 188
Period size: 27 Copynumber: 5.8 Consensus size: 27
60709226 GGGTATTTTA
* **
60709236 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
60709263 ATAATTCTGTAAAT--AAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
60709288 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
60709315 GT-ATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
60709341 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
60709368 GTAATTATGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
60709389 CTTTGGTAAT
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
25 21 0.19
26 29 0.26
27 60 0.55
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:60709347 original size:53 final size:54
Alignment explanation
Indices: 60709235--60709388 Score: 172
Period size: 53 Copynumber: 2.9 Consensus size: 54
60709225 AGGGTATTTT
* * * *** *
60709235 AGTAATTTTGTAAATCGAGGGTAAAATAATAATTCTGTAAAT--AAGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
60709287 AGTAATTCTATAAATCAAGGGTAAAACGGT-ATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
* * * * *
60709340 GGTAATTCTGTAAGTCGAGGGTAAAACGGTAATTATGTAAATCG-GGGTA
1 AGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
60709389 CTTTGGTAAT
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
51 11 0.13
52 24 0.28
53 40 0.46
54 12 0.14
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
AGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:60709397 original size:53 final size:53
Alignment explanation
Indices: 60709279--60709415 Score: 159
Period size: 53 Copynumber: 2.6 Consensus size: 53
60709269 CTGTAAATAA
* * * *
60709279 GGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTATTCTGTAAATCGAG
1 GGTAAAACGGTAATTCTATAAGTCGAGGGTAAAACGGTATTATGTAAATCGAG
*
60709332 GGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGGTAATTATGTAAATCG-G
1 GGTAAAACGGTAATTCTATAAGTCGAGGGTAAAACGGT-ATTATGTAAATCGAG
**** * *
60709385 GGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GGTAAAACGGTAATTCTATAAGTCGAGGGTA
60709416 TTTCAATAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 59 0.83
54 12 0.17
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (53 bp):
GGTAAAACGGTAATTCTATAAGTCGAGGGTAAAACGGTATTATGTAAATCGAG
Found at i:60712167 original size:31 final size:29
Alignment explanation
Indices: 60712129--60712190 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 29
60712119 CCTTTTCATA
60712129 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACT-GG-CGAAGCCT
**
60712160 TTTCATATTTCATATTACTGGCGAAGCCT
1 TTTCATATTTCATAACACTGGCGAAGCCT
60712189 TT
1 TT
60712191 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 10 0.34
30 2 0.07
31 17 0.59
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (29 bp):
TTTCATATTTCATAACACTGGCGAAGCCT
Found at i:60712435 original size:23 final size:23
Alignment explanation
Indices: 60712382--60712569 Score: 247
Period size: 23 Copynumber: 8.1 Consensus size: 23
60712372 TGCTTTATCA
*
60712382 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
* *
60712406 TAGTAACTGGGGCAAAAGCCTTTT
1 TA-TAACTGGGGCATAAGCCCTTT
60712430 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
60712453 ATATAACTGGGGCATAAGCCCTTCA
1 -TATAACTGGGGCATAAGCCCTT-T
60712478 TATAACTGGGG-ATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
60712500 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
60712523 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
60712546 AATAACT-GGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
60712568 TA
1 TA
60712570 GACTTCCTCC
Statistics
Matches: 150, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
22 26 0.17
23 70 0.47
24 43 0.29
25 11 0.07
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:60712644 original size:20 final size:20
Alignment explanation
Indices: 60712614--60712684 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
60712604 GCATTTATGA
*
60712614 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
60712634 ACATATAATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
60712654 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
60712674 ACATATCATGT
1 ACATATCATGT
60712685 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:60713997 original size:26 final size:27
Alignment explanation
Indices: 60713919--60714000 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
60713909 GGGCATATTC
* *
60713919 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
60713946 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
60713973 GTCACTTTACCCTA-AGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
60713999 GT
1 GT
60714001 TTTTACCTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
26 14 0.27
27 37 0.71
28 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:60714091 original size:27 final size:27
Alignment explanation
Indices: 60714061--60714112 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
60714051 GTAAATCTAC
60714061 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
60714088 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
60714113 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:60714172 original size:27 final size:27
Alignment explanation
Indices: 60714124--60714340 Score: 171
Period size: 27 Copynumber: 8.1 Consensus size: 27
60714114 AGAAAGTCAA
* **
60714124 GGTATTTT-GTAACTTTGTAAATCAGG
1 GGTATTTTAGTAATTTTACAAATCAGG
* *
60714150 GGTATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTAGTAATTTTACAAATCAG-G
* * *
60714177 GGTATTTTAGTAATTTCACAAACCAGT
1 GGTATTTTAGTAATTTTACAAATCAGG
*
60714204 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTACAAATC-AGG
* *
60714231 GGTATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTAGTAATTTTACAAATCAG-G
* *
60714258 GGTATTTCT-GTAATTTTACAAACCAAG
1 GGTATTT-TAGTAATTTTACAAATCAGG
* *
60714285 GGTATTTTAGCAATTTTA-ACA-CTA-G
1 GGTATTTTAGTAATTTTACAAATC-AGG
** *
60714310 GGTATTTTAGTAATTTTGTAAATCAAG
1 GGTATTTTAGTAATTTTACAAATCAGG
60714337 GGTA
1 GGTA
60714341 AAACAGTAAT
Statistics
Matches: 157, Mismatches: 21, Indels: 25
0.77 0.10 0.12
Matches are distributed among these distances:
25 18 0.11
26 18 0.11
27 119 0.76
28 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTACAAATCAGG
Found at i:60714181 original size:81 final size:82
Alignment explanation
Indices: 60714096--60714326 Score: 257
Period size: 81 Copynumber: 2.9 Consensus size: 82
60714086 GTAAACCAAT
* * * *
60714096 GGTATTTCTATAATTTTTAGAAAGTCA-AGGTATTTT-GTAACTTTGTA-AATC-AGGGGTATTT
1 GGTATTTCTATAATTTTCACAAA-CCAGAGGTATTTTGGTAA-TTT-TACAAACTAGGGGTATTT
60714157 TGGTAATTTTACAAATTGAG
63 TGGTAATTTTACAAATTGAG
*
60714177 GGTATTT-TAGTAA-TTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GGTATTTCTA-TAATTTTCACAAACCAGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
60714240 GTAATTTTACAAATTGAG
65 GTAATTTTACAAATTGAG
* * * * *
60714258 GGTATTTCTGTAATTTT-ACAAACCA-AGGGTATTTTAGCAATTTTA-ACACTA-GGGTATTTTA
1 GGTATTTCTATAATTTTCACAAACCAGA-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
60714319 GTAATTTT
65 GTAATTTT
60714327 GTAAATCAAG
Statistics
Matches: 131, Mismatches: 11, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
79 21 0.16
80 28 0.21
81 78 0.60
82 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (82 bp):
GGTATTTCTATAATTTTCACAAACCAGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
TAATTTTACAAATTGAG
Done.