Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 203 of 770
Found at i:60714472 original size:26 final size:27
Alignment explanation
Indices: 60714319--60714465 Score: 192
Period size: 27 Copynumber: 5.6 Consensus size: 27
60714309 GGGTATTTTA
* *
60714319 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
60714346 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
60714373 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
60714400 GT-ATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
60714426 GTAATTCTGTAAGTC-GGGGT-AAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
60714451 GTAATTATGTAAATC
1 GTAATTCTGTAAATC
60714466 GGGGGTACTT
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
25 18 0.17
26 27 0.25
27 63 0.58
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACG
Found at i:60717991 original size:28 final size:28
Alignment explanation
Indices: 60717922--60718022 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60717912 GACAAGATTG
* * * *
60717922 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
60717952 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
60717980 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
60718009 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60718023 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:60725914 original size:28 final size:28
Alignment explanation
Indices: 60725845--60725945 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60725835 GACAAGATTG
* * * *
60725845 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
60725875 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
60725903 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
60725932 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60725946 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:60733979 original size:17 final size:17
Alignment explanation
Indices: 60733959--60733993 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60733949 AAAGAAGCGT
60733959 TTGATAGGCAGAAGTCC
1 TTGATAGGCAGAAGTCC
60733976 TTGATAGGCAGAAGTCC
1 TTGATAGGCAGAAGTCC
60733993 T
1 T
60733994 ATGCAGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (17 bp):
TTGATAGGCAGAAGTCC
Found at i:60738592 original size:28 final size:28
Alignment explanation
Indices: 60738559--60738619 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
60738549 TCGCTAAGCA
*
60738559 TGCGAGTTTGGTTAAT-GAGCACTAAGTG
1 TGCGAGTTTGATT-ATCGAGCACTAAGTG
60738587 TGCGAGTTTGATTATCGAGCACTAAGTG
1 TGCGAGTTTGATTATCGAGCACTAAGTG
60738615 TGCGA
1 TGCGA
60738620 AGGAAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
TGCGAGTTTGATTATCGAGCACTAAGTG
Found at i:60738914 original size:3 final size:3
Alignment explanation
Indices: 60738893--60738932 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
60738883 GTTGAAAAGT
60738893 ATA A-A ATA A-A ATAA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA AT
60738933 GATATGATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.12
3 27 0.79
4 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:60744924 original size:40 final size:40
Alignment explanation
Indices: 60744863--60744956 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
60744853 TCTCAATATT
* *
60744863 GCACACTTAGTGCCACATATAGCTAAAGCTATTCCAATTC
1 GCACACTTAGTGCCACATATAGCCAAAGCTATTCCAAATC
* ** * *
60744903 GCACACTTAGTGCTATTTATAGCCGAAGCTATTTCAAATC
1 GCACACTTAGTGCCACATATAGCCAAAGCTATTCCAAATC
*
60744943 TCACACTTAGTGCC
1 GCACACTTAGTGCC
60744957 GAACATAGTC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (40 bp):
GCACACTTAGTGCCACATATAGCCAAAGCTATTCCAAATC
Found at i:60749746 original size:45 final size:46
Alignment explanation
Indices: 60749649--60749757 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
60749639 AGCTTAAGAT
*
60749649 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
60749696 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
60749741 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
60749758 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:60750567 original size:2 final size:2
Alignment explanation
Indices: 60750560--60750592 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
60750550 GAATTAAGTT
60750560 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60750593 TCATGTATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60752164 original size:40 final size:40
Alignment explanation
Indices: 60752056--60752265 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
60752046 CGGGATTTAA
* * * * *
60752056 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
60752096 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60752136 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60752176 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60752216 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60752256 CCGGATATAT
1 CCGGATATAT
60752266 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:60755899 original size:13 final size:14
Alignment explanation
Indices: 60755879--60755911 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60755869 ATAGCTATAG
60755879 AATTATTA-GTGGA
1 AATTATTATGTGGA
*
60755892 AGTTATTATGTGGA
1 AATTATTATGTGGA
60755906 AATTAT
1 AATTAT
60755912 CCCATGAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.42
Consensus pattern (14 bp):
AATTATTATGTGGA
Found at i:60757025 original size:49 final size:49
Alignment explanation
Indices: 60756903--60757169 Score: 274
Period size: 49 Copynumber: 5.4 Consensus size: 49
60756893 ACTATGTGAT
* * * *
60756903 TATGTGA-TCCCGTATAAGACCATATCTAGGATATGACATCGGTGTGATTA
1 TATGTGACT-CCGTATAAGACCATATCTGGGATATGGCATCGGTATG-TAA
*
60756953 TATGT-TCT-CGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
1 TATGTGACTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
* * *
60757000 TATGTGACTCCGTATAAGACCATATCTGGGATATTGCACCGGTATGTGA
1 TATGTGACTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
* * * *
60757049 TATGTGATTCTGTATAAGACCATATCTGGGATATGGCATTGGTATGTGA
1 TATGTGACTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
* * * * * *
60757098 TATGTGATTTCATATAAGACCATAGT-TGGGCTCTGGCATCGGGT-TGTGAT
1 TATGTGACTCCGTATAAGACCATA-TCTGGGATATGGCATC-GGTATGT-AA
* *
60757148 TATGTGACTCTGTTTAAGACCA
1 TATGTGACTCCGTATAAGACCA
60757170 CAATTTTACT
Statistics
Matches: 184, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
47 7 0.04
48 35 0.19
49 115 0.62
50 27 0.15
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (49 bp):
TATGTGACTCCGTATAAGACCATATCTGGGATATGGCATCGGTATGTAA
Found at i:60757085 original size:98 final size:97
Alignment explanation
Indices: 60756903--60757169 Score: 310
Period size: 98 Copynumber: 2.7 Consensus size: 97
60756893 ACTATGTGAT
* * *
60756903 TATGTGATCCCGTATAAGACCATATCTAGGATA-TGACATCGG-TGTGATTATATG-TTCTCGTA
1 TATGTGAT-CCGTATAAGACCATATCTGGGATATTG-CACCGGTTGTGATTATGTGATTCT-GTA
60756965 TAAGACCATATCTGGGATATGGCATCGGTATGTAA
63 TAAGACCATATCTGGGATATGGCATCGGTATGTAA
60757000 TATGTGACTCCGTATAAGACCATATCTGGGATATTGCACCGGTATGTGA-TATGTGATTCTGTAT
1 TATGTGA-TCCGTATAAGACCATATCTGGGATATTGCACCGGT-TGTGATTATGTGATTCTGTAT
* *
60757064 AAGACCATATCTGGGATATGGCATTGGTATGTGA
64 AAGACCATATCTGGGATATGGCATCGGTATGTAA
* * * * * * * *
60757098 TATGTGATTTCATATAAGACCATAGT-TGGGCTCTGGCATCGGGTTGTGATTATGTGACTCTGTT
1 TATGTGA-TCCGTATAAGACCATA-TCTGGGATATTGCA-CCGGTTGTGATTATGTGATTCTGTA
60757162 TAAGACCA
63 TAAGACCA
60757170 CAATTTTACT
Statistics
Matches: 148, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
97 35 0.24
98 79 0.53
99 34 0.23
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (97 bp):
TATGTGATCCGTATAAGACCATATCTGGGATATTGCACCGGTTGTGATTATGTGATTCTGTATAA
GACCATATCTGGGATATGGCATCGGTATGTAA
Found at i:60758082 original size:38 final size:35
Alignment explanation
Indices: 60758023--60758140 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
60758013 TCAATCATGC
*
60758023 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
60758062 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
60758093 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
60758124 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
60758141 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:60758084 original size:31 final size:31
Alignment explanation
Indices: 60758046--60758140 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
60758036 CCTTTTCATA
*
60758046 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60758077 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60758108 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60758139 TT
1 TT
60758141 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:60758383 original size:24 final size:24
Alignment explanation
Indices: 60758332--60758498 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
60758322 ACTTTATCAT
* *
60758332 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
60758357 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
60758381 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
60758404 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60758428 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60758452 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60758476 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60758499 TTCACTTCCT
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:60758432 original size:71 final size:71
Alignment explanation
Indices: 60758331--60758498 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
60758321 TACTTTATCA
*
60758331 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
60758395 AGCCCTTT
64 AGCCCTTT
* * **
60758403 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
60758468 CCCTTT
66 CCCTTT
60758474 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
60758499 TTCACTTCCT
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:60758575 original size:20 final size:20
Alignment explanation
Indices: 60758550--60758609 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
60758540 TATGATTACC
60758550 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
60758570 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
60758590 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
60758610 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:60758684 original size:25 final size:25
Alignment explanation
Indices: 60758652--60758699 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60758642 ATACATAAAC
* * *
60758652 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
60758677 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60758700 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60759892 original size:27 final size:27
Alignment explanation
Indices: 60759857--60759912 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
60759847 GGGCATATTC
*
60759857 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
60759884 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
60759911 GT
1 GT
60759913 GTTGTTACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:60760005 original size:27 final size:27
Alignment explanation
Indices: 60759975--60760026 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
60759965 GTAAATCAAC
60759975 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
60760002 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
60760027 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:60760148 original size:27 final size:27
Alignment explanation
Indices: 60759983--60760231 Score: 119
Period size: 27 Copynumber: 9.1 Consensus size: 27
60759973 ACAAACCAAA
* * *
60759983 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTGTAAATCAAG
60760010 GGTATTTCTA-TAATTTT-TAGAAAGTCAAG
1 GGTATTT-TAGTAATTTTGT--AAA-TCAAG
* * *
60760039 GGTATTTCT-GTAACTTTGTAAATTAGG
1 GGTATTT-TAGTAATTTTGTAAATCAAG
* ** **
60760066 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
* *** *
60760093 GGT-TTTTCGGTAATTTCACAAACCAAG
1 GGTATTTT-AGTAATTTTGTAAATCAAG
*
60760120 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
**** *
60760147 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
**** * *
60760174 GGTAAAACAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
*** * *
60760201 GGTAAAATAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
60760228 GGTA
1 GGTA
60760232 AAACAGTAAT
Statistics
Matches: 184, Mismatches: 29, Indels: 18
0.80 0.13 0.08
Matches are distributed among these distances:
26 6 0.03
27 148 0.80
28 11 0.06
29 18 0.10
30 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTGTAAATCAAG
Found at i:60760232 original size:27 final size:27
Alignment explanation
Indices: 60760128--60760521 Score: 418
Period size: 27 Copynumber: 14.6 Consensus size: 27
60760118 AGGGTATTTT
* *
60760128 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
60760155 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
60760182 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
60760209 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
60760236 AGTAATTCAGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
60760263 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * *
60760290 -GATAATTATGTAAATTAGGGGTAAAAC
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
* * * *
60760317 GGTAATTATGTAAATTAGGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
60760344 AGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
60760371 -GATAATTATGTAAATCAGGGGTAAAAC
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
* * *
60760398 -GATAATTATGTAAATTAGGGGTAAAAC
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
* * *
60760425 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
60760452 -GATAATTATGTAAATCAGGGGTAAAAC
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
* * * *
60760479 GGTAATTATGTAAATTAGGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
60760506 GGTAATTCTGTAAATC
1 AGTAATTCTGTAAATC
60760522 GGGGTACTTT
Statistics
Matches: 322, Mismatches: 39, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
26 3 0.01
27 316 0.98
28 3 0.01
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:60760515 original size:81 final size:81
Alignment explanation
Indices: 60760130--60760527 Score: 554
Period size: 81 Copynumber: 4.9 Consensus size: 81
60760120 GGTATTTTAG
* * * * * * *
60760130 TAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 TAATTATGTAAATCAG-GGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTA
* * *
60760194 AATCAAGGGTAAAA-TA
65 AGTCGAGGGTAAAACGA
* * * * *
60760210 GTAATTCTATAAATCAAGGGTAAAACAGTAATTCA-GTAAA-TCGAGGGTAAAACGGTAATTCTG
1 -TAATTATGTAAATCAGGGGTAAAACGGTAATT-ATGTAAATTAG-GGGTAAAACGGTAATTCTG
60760273 TAAGTCGAGGGTAAAACGA
63 TAAGTCGAGGGTAAAACGA
* *
60760292 TAATTATGTAAATTAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACAGTAATTCTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
60760357 GTCGAGGGTAAAACGA
66 GTCGAGGGTAAAACGA
*
60760373 TAATTATGTAAATCAGGGGTAAAACGATAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
60760438 GTCGAGGGTAAAACGA
66 GTCGAGGGTAAAACGA
60760454 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
*
60760519 ATCG-GGGTA
66 GTCGAGGGTA
60760528 CTTTAGTAAT
Statistics
Matches: 287, Mismatches: 24, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
80 6 0.02
81 278 0.97
82 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
GTCGAGGGTAAAACGA
Found at i:60760563 original size:27 final size:26
Alignment explanation
Indices: 60760533--60760622 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
60760523 GGGTACTTTA
60760533 GTAATTTTACAAGTCGAAGGTATTTCG
1 GTAATTTTACAA-TCGAAGGTATTTCG
* * *
60760560 GTAAATTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCG
* * * *
60760587 GTATTTTTACAAACTAAGGGTATTTTG
1 GTAATTTTACAATCGAA-GGTATTTCG
60760614 GTAATTTTA
1 GTAATTTTA
60760623 GTAAACTAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 4 0.08
27 44 0.88
28 2 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCG
Found at i:60760620 original size:53 final size:53
Alignment explanation
Indices: 60760517--60760622 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
60760507 GTAATTCTGT
*
60760517 AAATCGGGGTACTTTAGTAATTTTACAAGTCGAAGGTATTTCGGTAAATTTAC
1 AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCGGTAAATTTAC
* * * *
60760570 AAATCGAGGGTA-TTTCAGTATTTTTACAA-ACTAAGGGTATTTTGGTAATTTTA
1 AAATCG-GGGTACTTT-AGTAATTTTACAAGACGAA-GGTATTTCGGTAAATTTA
60760623 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (53 bp):
AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCGGTAAATTTAC
Found at i:60761497 original size:15 final size:16
Alignment explanation
Indices: 60761477--60761511 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
60761467 GTATGGCAGG
60761477 ATATGTTAGTGAA-TT
1 ATATGTTAGTGAATTT
60761492 ATATGTTAGTGAATTT
1 ATATGTTAGTGAATTT
60761508 ATAT
1 ATAT
60761512 TTGAAGTTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (16 bp):
ATATGTTAGTGAATTT
Found at i:60765464 original size:24 final size:24
Alignment explanation
Indices: 60765436--60765482 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
60765426 TATAAACTGA
60765436 GTGTATGTATTCCTGAAAGAGTAT
1 GTGTATGTATTCCTGAAAGAGTAT
60765460 GTGTATGTATTCCTGAAAGAGTA
1 GTGTATGTATTCCTGAAAGAGTA
60765483 ACTGAGATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.36
Consensus pattern (24 bp):
GTGTATGTATTCCTGAAAGAGTAT
Found at i:60767022 original size:49 final size:49
Alignment explanation
Indices: 60766893--60767168 Score: 308
Period size: 49 Copynumber: 5.6 Consensus size: 49
60766883 ACATGTGACC
** *
60766893 ATGTGATTATGTGATCCCGTATAAGACCATATCTAGGATATGGCATC-G-
1 ATGTGA-TATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* * *
60766941 GTGTGATTATATGTTTTCGTATAAGACCATATCTGGGATATGGCATCAGT
1 ATGTGA-TATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* * * * *
60766991 ATGTAATATGTAATTTCGTACAAGACCATATCTAGGATATGGCATCGGT
1 ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* *
60767040 ATGTGATATGTGATTCCGTATAAAACCATATCTGGGATATGGCATCAGT
1 ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* * * *
60767089 ATGTGATATGTGATTTCGTAGAAGACCATAGCTGGGCTATGGCATCGGCT
1 ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAG-T
* *
60767139 -TGTGATTATGTGA-CTCTGTTTAAGACCATA
1 ATGTGA-TATGTGATTTC-GTATAAGACCATA
60767169 GTTTTACTAT
Statistics
Matches: 193, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
48 41 0.21
49 129 0.67
50 23 0.12
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (49 bp):
ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
Found at i:60767089 original size:98 final size:98
Alignment explanation
Indices: 60766910--60767151 Score: 353
Period size: 98 Copynumber: 2.5 Consensus size: 98
60766900 TATGTGATCC
* * * * *
60766910 CGTATAAGACCATATCTAGGATATGGCATCGG-TGTGATTATATGTTTTCGTATAAGACCATATC
1 CGTACAAGACCATATCTAGGATATGGCATCGGTTGTGATTATGTGATTCCGTATAAAACCATATC
60766974 TGGGATATGGCATCAGTATGTAATATGTAATTT
66 TGGGATATGGCATCAGTATGTAATATGTAATTT
60767007 CGTACAAGACCATATCTAGGATATGGCATCGGTATGTGA-TATGTGATTCCGTATAAAACCATAT
1 CGTACAAGACCATATCTAGGATATGGCATCGGT-TGTGATTATGTGATTCCGTATAAAACCATAT
* *
60767071 CTGGGATATGGCATCAGTATGTGATATGTGATTT
65 CTGGGATATGGCATCAGTATGTAATATGTAATTT
* * * *
60767105 CGTAGAAGACCATAGCTGGGCTATGGCATCGGCTTGTGATTATGTGA
1 CGTACAAGACCATATCTAGGATATGGCATCGG-TTGTGATTATGTGA
60767152 CTCTGTTTAA
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
97 31 0.24
98 86 0.66
99 13 0.10
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (98 bp):
CGTACAAGACCATATCTAGGATATGGCATCGGTTGTGATTATGTGATTCCGTATAAAACCATATC
TGGGATATGGCATCAGTATGTAATATGTAATTT
Found at i:60769324 original size:40 final size:40
Alignment explanation
Indices: 60769279--60769446 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
60769269 CGGAATATAA
60769279 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60769319 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
60769359 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60769399 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
60769439 CCGGATAT
1 CCGGATAT
60769447 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60777329 original size:40 final size:40
Alignment explanation
Indices: 60777284--60777451 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
60777274 CGGAATATAA
60777284 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60777324 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
60777364 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60777404 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
60777444 CCGGATAT
1 CCGGATAT
60777452 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60786503 original size:16 final size:16
Alignment explanation
Indices: 60786478--60786509 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60786468 CAATCTTTAT
*
60786478 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
60786494 AAAATCTTTGTTTTTG
1 AAAATCTTTGTTTTTG
60786510 TAAACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:60787516 original size:27 final size:26
Alignment explanation
Indices: 60787477--60787642 Score: 188
Period size: 27 Copynumber: 6.2 Consensus size: 26
60787467 AGCATGGCTG
* *
60787477 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
60787503 CCAGATACTGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
60787531 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
60787558 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
60787585 CCAGAACAGATATATGTGGCAGAACCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
60787612 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
60787639 CCAG
1 CCAG
60787643 GACGCTTCCT
Statistics
Matches: 120, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.05
27 98 0.82
28 16 0.13
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:60787541 original size:54 final size:54
Alignment explanation
Indices: 60787477--60787642 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
60787467 AGCATGGCTG
* * * ** *
60787477 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACTGATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
*
60787531 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
*
60787585 CCAGAACAGATATATGTGGCAGAACCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
60787639 CCAG
1 CCAG
60787643 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 84 0.82
55 18 0.18
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
Found at i:60790488 original size:40 final size:40
Alignment explanation
Indices: 60790443--60790572 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60790433 CGGAATACAA
60790443 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
60790483 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
60790523 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
60790563 CCGGATATAA
1 CCGGATATAA
60790573 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:60790587 original size:40 final size:40
Alignment explanation
Indices: 60790443--60790605 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
60790433 CGGAATACAA
* **
60790443 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
60790483 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
60790523 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
60790563 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
60790602 CCGG
1 CCGG
60790606 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:60798505 original size:40 final size:40
Alignment explanation
Indices: 60798460--60798589 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
60798450 CGGAATACAA
60798460 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
60798500 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
60798540 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
60798580 CCGGATATAA
1 CCGGATATAA
60798590 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:60798604 original size:40 final size:40
Alignment explanation
Indices: 60798460--60798622 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
60798450 CGGAATACAA
* **
60798460 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
60798500 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
60798540 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
60798580 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
60798619 CCGG
1 CCGG
60798623 TATCATTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:60800534 original size:26 final size:26
Alignment explanation
Indices: 60800498--60800685 Score: 313
Period size: 26 Copynumber: 7.2 Consensus size: 26
60800488 CATGATATTC
60800498 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
60800524 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
60800550 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
60800576 TTATCATGAAACATTTATCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
60800602 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
60800628 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
60800654 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
60800680 TTATCA
1 TTATCA
60800686 ATTTGTATCA
Statistics
Matches: 150, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 150 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:60800579 original size:52 final size:52
Alignment explanation
Indices: 60800498--60800685 Score: 349
Period size: 52 Copynumber: 3.6 Consensus size: 52
60800488 CATGATATTC
* *
60800498 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
*
60800550 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTATCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
60800602 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
60800654 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
60800686 ATTTGTATCA
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 132 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:60814082 original size:32 final size:32
Alignment explanation
Indices: 60814046--60814109 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
60814036 ACACATCTCC
60814046 ACATACTTGAATCGGTTATTCATTCATTCAAT
1 ACATACTTGAATCGGTTATTCATTCATTCAAT
*
60814078 ACATACTTGAATTGGTTATTCATTCATTCAAT
1 ACATACTTGAATCGGTTATTCATTCATTCAAT
60814110 CATGTATTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.42
Consensus pattern (32 bp):
ACATACTTGAATCGGTTATTCATTCATTCAAT
Found at i:60814304 original size:43 final size:44
Alignment explanation
Indices: 60814185--60814304 Score: 158
Period size: 42 Copynumber: 2.8 Consensus size: 44
60814175 AGCTCATACA
60814185 ATGCCAATGT-CCAGATATGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAAATCAAATATCG
* * * *
60814227 ATGCCACTATCCCAGATAGGGTCTTACACG-AAATCAAATAT-G
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAAATCAAATATCG
* *
60814269 ATGCGAATGTCCCAGACATGGTCTTACATGTAAATC
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAAATC
60814305 TCAAATCAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
42 33 0.51
43 32 0.49
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (44 bp):
ATGCCAATGTCCCAGATATGGTCTTACATGTAAATCAAATATCG
Found at i:60816727 original size:40 final size:40
Alignment explanation
Indices: 60816672--60816875 Score: 257
Period size: 40 Copynumber: 5.1 Consensus size: 40
60816662 TGAATGATAC
* *
60816672 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
60816712 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
60816752 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
60816792 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
60816832 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
60816872 CCGG
1 CCGG
60816876 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 140 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:60820097 original size:28 final size:28
Alignment explanation
Indices: 60820012--60820103 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
60820002 TGGGAAGTAG
*
60820012 TTGGGCCTGATAGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
60820040 TTAGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
60820068 TTGGGCTTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
60820096 TTGGGCCT
1 TTGGGCCT
60820104 AAAGGGGCCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.22, C:0.15, G:0.35, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:60820448 original size:27 final size:27
Alignment explanation
Indices: 60820418--60820890 Score: 407
Period size: 27 Copynumber: 17.6 Consensus size: 27
60820408 TAATAAAGAG
*
60820418 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
60820445 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
60820472 AAATTA-TCGAAATACCCTCGATTT-TGA
1 AAATTACT-GAAATACCCTCGATTTGT-A
*
60820499 AAA-TACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
60820525 AAATTATTGAAATACCCTCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
60820552 AAATTACCAAAACACGCC-CAATTTGTA
1 AAATTACTGAAATAC-CCTCGATTTGTA
* * *
60820579 AAATTA-TCAAAATACCCTC-AATTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* **
60820605 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
60820632 AAATTA-TCAAAATACCC-CTGATTTGTG
1 AAATTACT-GAAATACCCTC-GATTTGTA
* * *
60820659 AAATTA-TCGGAACACCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
60820686 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
60820713 AAATTA-TCGAAACACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
** *
60820740 AAATTACCAAAATGCCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
60820767 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
60820794 ATATTACCGAAACACCC-CGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
60820820 AAATTA-TCGAAATACCCT-TATAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
* * *
60820847 AAATTACTAAAATACCCTTG-TAGTGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
* *
60820874 AAATGACTGACATACCC
1 AAATTACTGAAATACCC
60820891 CTGGAGGGTA
Statistics
Matches: 373, Mismatches: 52, Indels: 42
0.80 0.11 0.09
Matches are distributed among these distances:
26 72 0.19
27 298 0.80
28 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:60820877 original size:107 final size:108
Alignment explanation
Indices: 60820418--60820864 Score: 500
Period size: 107 Copynumber: 4.2 Consensus size: 108
60820408 TAATAAAGAG
* *
60820418 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAA
*
60820483 ATACCCTCGATTT-TGAAAA-TACTAAAATACCCTCGATTTGTA
66 ACACCCTCGATTTGT-AAAATTACTAAAATACCCTCGATTTGTA
* * * * * * *
60820525 AAATTATTGAAATACCCTCGATTTGTGAAATTACCAAAACACGCC-CAATTTGTAAAATTATCAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAACAC-CCTCGATTTGTAAAATTACCGA
* * * **
60820589 AATACCCTC-AATTGTGAAATTACTAAAATACCCTCGACCTGTA
65 AACACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
* * * *
60820632 AAATTA-TCAAAATACCC-CTGATTTGTGAAATTATCGGAACACCCTTGATTTGTAAAATTACCG
1 AAATTACT-AAAATACCCTC-GATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCG
* * *
60820695 AAACACCCTCAATTTGTAAAATTA-TCGAAACACCCTCGATTTGTA
64 AAACACCCTCGATTTGTAAAATTACT-AAAATACCCTCGATTTGTA
* * * *
60820740 AAATTACCAAAATGCCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAATATTACCGAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAA
* * *
60820805 ACACCC-CGATTTGTAAAATTA-TCGAAATACCCT-TATAGTGTA
66 ACACCCTCGATTTGTAAAATTACT-AAAATACCCTCGAT-TTGTA
60820847 AAATTACTAAAATACCCT
1 AAATTACTAAAATACCCT
60820865 TGTAGTGTAA
Statistics
Matches: 289, Mismatches: 40, Indels: 22
0.82 0.11 0.06
Matches are distributed among these distances:
106 12 0.04
107 188 0.65
108 88 0.30
109 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (108 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAA
ACACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
Found at i:60820901 original size:27 final size:27
Alignment explanation
Indices: 60820844--60820909 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
60820834 CCCTTATAGT
* * * *
60820844 GTAAAATTACTAAAATACCCTTGTAGT
1 GTAAAATGACTAAAATACCCCTGGAGG
* *
60820871 GTAAAATGACTGACATACCCCTGGAGG
1 GTAAAATGACTAAAATACCCCTGGAGG
60820898 GTAAAATGACTA
1 GTAAAATGACTA
60820910 TTTTGCCCTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAAAATGACTAAAATACCCCTGGAGG
Found at i:60827845 original size:40 final size:40
Alignment explanation
Indices: 60827800--60827967 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
60827790 CGGAATACAA
60827800 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
60827840 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
60827880 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
60827920 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
60827960 CCGGATAT
1 CCGGATAT
60827968 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:60839948 original size:40 final size:40
Alignment explanation
Indices: 60839903--60840070 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
60839893 CGGAATACAA
60839903 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
60839943 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
60839983 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
60840023 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
60840063 CCGGATAT
1 CCGGATAT
60840071 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:60843586 original size:40 final size:40
Alignment explanation
Indices: 60843541--60843708 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
60843531 CGGAATACAA
60843541 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
60843581 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
60843621 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
60843661 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
60843701 CCGGATAT
1 CCGGATAT
60843709 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:60846027 original size:39 final size:39
Alignment explanation
Indices: 60845984--60846082 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 39
60845974 CATTTTCACT
* * *
60845984 TTTAAGCATATATCACATTACACATATAATCATACAACA
1 TTTAAGCATATATCACAATACACATATAATAACACAACA
* *
60846023 TTTAAGCATATATCACAATACTCATATAATAACATAACA
1 TTTAAGCATATATCACAATACACATATAATAACACAACA
* *
60846062 TTCAAACATATATCACAATAC
1 TTTAAGCATATATCACAATAC
60846083 TAAAAAACAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.30
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATAACACAACA
Found at i:60846667 original size:7 final size:7
Alignment explanation
Indices: 60846655--60846702 Score: 60
Period size: 7 Copynumber: 6.6 Consensus size: 7
60846645 CACATATTCA
60846655 TAAACCC
1 TAAACCC
*
60846662 TAAACCT
1 TAAACCC
60846669 TAAAACCC
1 T-AAACCC
60846677 TAAACCC
1 TAAACCC
*
60846684 TAAATCC
1 TAAACCC
60846691 TAAAACCC
1 T-AAACCC
60846699 TAAA
1 TAAA
60846703 TTTAGGACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
7 23 0.66
8 12 0.34
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:60846676 original size:15 final size:15
Alignment explanation
Indices: 60846656--60846702 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
60846646 ACATATTCAT
*
60846656 AAACCCTAAACCTTA
1 AAACCCTAAACCCTA
60846671 AAACCCTAAACCCT-
1 AAACCCTAAACCCTA
*
60846685 AAATCCTAAAACCCTA
1 AAACCCT-AAACCCTA
60846701 AA
1 AA
60846703 TTTAGGACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 6 0.21
15 20 0.71
16 2 0.07
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (15 bp):
AAACCCTAAACCCTA
Found at i:60846683 original size:22 final size:22
Alignment explanation
Indices: 60846655--60846702 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
60846645 CACATATTCA
60846655 TAAACCCTAAA-CCTTAAAACCC
1 TAAACCCTAAATCC-TAAAACCC
60846677 TAAACCCTAAATCCTAAAACCC
1 TAAACCCTAAATCCTAAAACCC
60846699 TAAA
1 TAAA
60846703 TTTAGGACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (22 bp):
TAAACCCTAAATCCTAAAACCC
Found at i:60849815 original size:40 final size:40
Alignment explanation
Indices: 60849756--60849897 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
60849746 AAATTGAATG
* * *
60849756 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
60849796 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
60849836 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
60849876 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
60849898 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:60849898 original size:40 final size:39
Alignment explanation
Indices: 60849795--60849923 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
60849785 TGCTGGAAAT
* * *
60849795 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
60849835 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
60849875 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
60849915 TATATCCGG
1 TATATCCGG
60849924 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:60851705 original size:27 final size:27
Alignment explanation
Indices: 60851667--60851736 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
60851657 CAATTTGATG
*
60851667 AAATGACTATTTTGCCCTTATGA-GGTA
1 AAATGACTATTTTGCCCTTAT-ACAGTA
60851694 AAATGACTATTTTGCCCTTATACAGTA
1 AAATGACTATTTTGCCCTTATACAGTA
* *
60851721 AGATGACTGTTTTGCC
1 AAATGACTATTTTGCC
60851737 TCTATGTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 38 0.97
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATACAGTA
Found at i:60853388 original size:50 final size:49
Alignment explanation
Indices: 60853210--60853453 Score: 283
Period size: 49 Copynumber: 4.9 Consensus size: 49
60853200 TCTATTGTGA
* *
60853210 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
60853259 GGTCGCATGTGCAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * **
60853310 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
60853359 AGGTCACGTGTGTAGTACTAATTGTAGGCTACTACATGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
60853409 GG-CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
60853454 CCTTTGGCTA
Statistics
Matches: 161, Mismatches: 31, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
48 36 0.22
49 44 0.27
50 42 0.26
51 39 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:60853452 original size:98 final size:99
Alignment explanation
Indices: 60853217--60853440 Score: 281
Period size: 100 Copynumber: 2.3 Consensus size: 99
60853207 TGAGGTCACG
* *
60853217 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGCAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGCAGTACTAAGTG
** * * *
60853282 CAGGCTACTATGCGTACCCGATAACTTTGATCACG
66 CAGGCTACTACACGTACCAGATAAC-TTGAGCACA
** * * *
60853317 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAATT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACATGTGCAGTACTAAGT
* * *
60853382 GTAGGCTACTACATGTACCAGATAA-TTG-GCGCA
65 GCAGGCTACTACACGTACCAGATAACTTGAGCACA
60853415 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
60853441 TGCGTACCAG
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
98 28 0.26
99 3 0.03
100 39 0.36
101 38 0.35
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGCAGTACTAAGTG
CAGGCTACTACACGTACCAGATAACTTGAGCACA
Found at i:60853483 original size:149 final size:150
Alignment explanation
Indices: 60853209--60853486 Score: 400
Period size: 149 Copynumber: 1.9 Consensus size: 150
60853199 ATCTATTGTG
* * *
60853209 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGCAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGT
* * * *
60853274 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAAGTGCAGGCT
60853339 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* * *
60853359 AGGTCACGTGTGTAGTACTAATTGTAGGCTACTACATGTACCAGATAATTGG-CGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGT
* * *
60853423 ACTAAGTGCAGGCTACTATGCGTACCAGATACCTTTGGCTACAAGTGTG-A-AAATATGTGCAGG
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTT-GAT-CAAGTGTGTAGAAATAAGTGCAGG
60853486 C
129 C
60853487 AATTGAGTAT
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
149 56 0.50
150 50 0.44
151 7 0.06
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAAGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:60853819 original size:23 final size:24
Alignment explanation
Indices: 60853773--60853825 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
60853763 AAAGCTTAAT
60853773 TAAAATAGGGGATACTTTTAATAA
1 TAAAATAGGGGATACTTTTAATAA
60853797 TAAAATAGGGGATAC-TTTAATAA
1 TAAAATAGGGGATACTTTTAATAA
60853820 TAAAAT
1 TAAAAT
60853826 GTACTTATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.49, C:0.04, G:0.15, T:0.32
Consensus pattern (24 bp):
TAAAATAGGGGATACTTTTAATAA
Found at i:60860775 original size:27 final size:27
Alignment explanation
Indices: 60860736--60860808 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
60860726 CAGTTTGATG
* *
60860736 AAATGACTGTTTTGCCGTTATGA-GGTA
1 AAATGACTATTTTGCCCTTAT-ATGGTA
60860763 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
*
60860790 AGATGACTATTTTGTCCCT
1 AAATGACTATTTTG-CCCT
60860809 ATGTGATGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 36 0.88
28 4 0.10
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATATGGTA
Found at i:60862204 original size:2 final size:2
Alignment explanation
Indices: 60862162--60862186 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60862152 CACACATACT
60862162 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
60862187 GCCTAAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60865783 original size:11 final size:11
Alignment explanation
Indices: 60865747--60865802 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60865737 CATGGTATGT
60865747 ATGATATGCAC
1 ATGATATGCAC
* *
60865758 ATGACATG--T
1 ATGATATGCAC
60865767 ATGATATGCAC
1 ATGATATGCAC
*
60865778 ATGATATG--T
1 ATGATATGCAC
60865787 ATGATATGCAC
1 ATGATATGCAC
60865798 ATGAT
1 ATGAT
60865803 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60865802 original size:20 final size:20
Alignment explanation
Indices: 60865736--60865802 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
60865726 ATTTTGATAA
*
60865736 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60865756 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
60865776 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60865796 ACATGAT
1 ACATGAT
60865803 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60865879 original size:24 final size:24
Alignment explanation
Indices: 60865852--60865998 Score: 269
Period size: 24 Copynumber: 6.1 Consensus size: 24
60865842 GAGGAAGTGC
60865852 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
60865876 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
60865900 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
60865924 AAAAAGGGCTTATGCCCCGGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
60865949 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
60865973 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
60865996 AAA
1 AAA
60865999 GAAGCTAGGC
Statistics
Matches: 120, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
23 16 0.13
24 81 0.68
25 23 0.19
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:60865948 original size:49 final size:48
Alignment explanation
Indices: 60865852--60865998 Score: 269
Period size: 49 Copynumber: 3.1 Consensus size: 48
60865842 GAGGAAGTGC
60865852 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
60865900 AAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCGGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
60865949 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
60865996 AAA
1 AAA
60865999 GAAGCTAGGC
Statistics
Matches: 96, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 15 0.16
48 34 0.35
49 47 0.49
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:60865971 original size:73 final size:72
Alignment explanation
Indices: 60865852--60865998 Score: 276
Period size: 73 Copynumber: 2.0 Consensus size: 72
60865842 GAGGAAGTGC
60865852 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCC
60865917 AGTTATTA
65 AGTTATTA
*
60865925 AAAAGGGCTTATGCCCCGGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCA
60865990 GTTATTA
66 GTTATTA
60865997 AA
1 AA
60865999 GAAGCTAGGC
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
72 16 0.22
73 57 0.78
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCA
GTTATTA
Found at i:60874524 original size:28 final size:27
Alignment explanation
Indices: 60874463--60874532 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
60874453 ATAGTGAGTC
*
60874463 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
60874490 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
60874518 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60874533 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:60876999 original size:11 final size:11
Alignment explanation
Indices: 60876963--60877018 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60876953 CATGGTATGT
60876963 ATGATATGCAC
1 ATGATATGCAC
* *
60876974 ATGACATG--T
1 ATGATATGCAC
60876983 ATGATATGCAC
1 ATGATATGCAC
*
60876994 ATGATATG--T
1 ATGATATGCAC
60877003 ATGATATGCAC
1 ATGATATGCAC
60877014 ATGAT
1 ATGAT
60877019 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60877018 original size:20 final size:20
Alignment explanation
Indices: 60876952--60877018 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
60876942 ATTTTGATAA
*
60876952 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60876972 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
60876992 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60877012 ACATGAT
1 ACATGAT
60877019 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60877096 original size:25 final size:25
Alignment explanation
Indices: 60877068--60877142 Score: 136
Period size: 25 Copynumber: 3.1 Consensus size: 25
60877058 GAGGAAGTGC
60877068 AAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
60877093 AAAAGGGCTTATGCCCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATTA
60877117 AAAAGGGCTT-TGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
60877141 AA
1 AA
60877143 GAGGCTAGGC
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
23 13 0.27
24 12 0.24
25 24 0.49
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTATTA
Found at i:60878407 original size:27 final size:27
Alignment explanation
Indices: 60878371--60878474 Score: 109
Period size: 27 Copynumber: 3.9 Consensus size: 27
60878361 CAGCGATGGT
* * *
60878371 AATATAATCGGCACACAGCCATGGGTA
1 AATATGATCGGCACAAAGCCATAGGTA
* * * * *
60878398 AATATGATCGACACAGAGTCATCGATA
1 AATATGATCGGCACAAAGCCATAGGTA
* *
60878425 AATATGATAGGCACATAGCCATAGGTA
1 AATATGATCGGCACAAAGCCATAGGTA
*
60878452 AATATGATTGGCACAAAGCCATA
1 AATATGATCGGCACAAAGCCATA
60878475 ATCAAGATAG
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.21
Consensus pattern (27 bp):
AATATGATCGGCACAAAGCCATAGGTA
Found at i:60878920 original size:27 final size:27
Alignment explanation
Indices: 60878890--60878959 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
60878880 CCTATAGGGA
60878890 TATTTCGATAATTTTACACTACAAAGG
1 TATTTCGATAATTTTACACTACAAAGG
** *
60878917 TATTTCGGCAATTTTACACTACAAGGG
1 TATTTCGATAATTTTACACTACAAAGG
60878944 TATTTCGATAATTTTA
1 TATTTCGATAATTTTA
60878960 TAAACTGGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (27 bp):
TATTTCGATAATTTTACACTACAAAGG
Found at i:60881485 original size:11 final size:12
Alignment explanation
Indices: 60881463--60881491 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
60881453 CAAAAATGTA
60881463 AAAATATTCATC
1 AAAATATTCATC
60881475 AAAAT-TTCATC
1 AAAATATTCATC
60881486 AAAATA
1 AAAATA
60881492 AAAAATTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATATTCATC
Found at i:60885347 original size:33 final size:35
Alignment explanation
Indices: 60885256--60885367 Score: 102
Period size: 35 Copynumber: 3.3 Consensus size: 35
60885246 GCATCCACAA
* * *
60885256 AGATAAAGTCCATCAAGACAGTAAACACGAAACAG
1 AGATAAAGTTCACCAGGACAGTAAACACGAAACAG
* * *
60885291 TGATAAAGTTCACCAGGATAGTAAACACGAAATAG
1 AGATAAAGTTCACCAGGACAGTAAACACGAAACAG
* ** * *
60885326 AG-T-AAGTTCGCTGGGACAGTAAACACAAAACAT
1 AGATAAAGTTCACCAGGACAGTAAACACGAAACAG
*
60885359 ATATAAAGT
1 AGATAAAGT
60885368 CCACTGGAAA
Statistics
Matches: 60, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
33 24 0.40
34 2 0.03
35 34 0.57
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (35 bp):
AGATAAAGTTCACCAGGACAGTAAACACGAAACAG
Found at i:60886464 original size:46 final size:45
Alignment explanation
Indices: 60886411--60886583 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 45
60886401 TGGTTGAGCA
*
60886411 TCCGAACTCGTTGAGTTGAGTGCGAGTTCACTTATGGGTGCGAATG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
* * *
60886457 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAA-T--G
60886502 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAG-TCGAGTTCACTTATGGATGCGAATG
60886550 -CCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTC-GAGTTCACTTA
60886584 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 56 0.52
47 27 0.25
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATG
Found at i:60886567 original size:93 final size:93
Alignment explanation
Indices: 60886408--60886578 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
60886398 GGATGGTTGA
*
60886408 GCATCCGAACTCGTTGAGTTGAGTGCGAGTTCACTTATGGGTGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTGCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
60886473 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60886501 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG-CCTGAACTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTGCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
*
60886565 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
60886579 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTGCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60889820 original size:12 final size:12
Alignment explanation
Indices: 60889798--60889834 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
60889788 TAATTAATAC
60889798 AAAAG-AAGTTG
1 AAAAGAAAGTTG
*
60889809 AAACGAAAGTTG
1 AAAAGAAAGTTG
60889821 AAAAGAAAGTTG
1 AAAAGAAAGTTG
60889833 AA
1 AA
60889835 TCAGTGCCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.57, C:0.03, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAAGAAAGTTG
Found at i:60893602 original size:46 final size:46
Alignment explanation
Indices: 60893552--60893724 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
60893542 TGGTTGAGCA
60893552 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60893598 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60893643 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60893691 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60893725 GGGCCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60893708 original size:93 final size:93
Alignment explanation
Indices: 60893549--60893719 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60893539 GGATGGTTGA
*
60893549 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
60893614 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
60893642 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
60893707 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60893720 ACTTAGGGCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60898874 original size:32 final size:33
Alignment explanation
Indices: 60898833--60898895 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
60898823 AAGGAGAGCA
* *
60898833 TGCTGGTTGACGAATTTAATG-AGCTGCTGGGC
1 TGCTAGTTGACGAATTAAATGAAGCTGCTGGGC
*
60898865 TGCTAGTTGACGGATTAAATGAAGCTGCTGG
1 TGCTAGTTGACGAATTAAATGAAGCTGCTGG
60898896 TGGCTGAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 18 0.67
33 9 0.33
ACGTcount: A:0.22, C:0.14, G:0.33, T:0.30
Consensus pattern (33 bp):
TGCTAGTTGACGAATTAAATGAAGCTGCTGGGC
Found at i:60902234 original size:40 final size:40
Alignment explanation
Indices: 60902062--60902227 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
60902052 AACCCAAGTA
* *
60902062 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60902101 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60902141 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
60902181 CCTTTGGAACTTAGCCCGGATATAGTAACACACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60902221 CCTTCGG
1 CCTTCGG
60902228 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 13 0.11
40 106 0.89
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60904257 original size:93 final size:93
Alignment explanation
Indices: 60904145--60904316 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60904135 CGCCCATAAG
* *
60904145 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60904210 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
60904238 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60904303 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
60904317 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:60904313 original size:46 final size:46
Alignment explanation
Indices: 60904138--60904313 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60904128 TGTAACCCGC
* * *
60904138 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
60904184 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
60904234 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
60904277 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
60904314 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:60911790 original size:93 final size:93
Alignment explanation
Indices: 60911678--60911849 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60911668 CGCCCATAAG
* *
60911678 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60911743 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
60911771 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60911836 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
60911850 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:60911846 original size:46 final size:46
Alignment explanation
Indices: 60911671--60911846 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60911661 TGTAACCCGC
* * *
60911671 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
60911717 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
60911767 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
60911810 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
60911847 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:60919154 original size:18 final size:18
Alignment explanation
Indices: 60919131--60919167 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
60919121 AATATAATCG
60919131 TTATTTTAAATCATTTAA
1 TTATTTTAAATCATTTAA
60919149 TTATTTTAAATCATTTAA
1 TTATTTTAAATCATTTAA
60919167 T
1 T
60919168 GCTATTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATTTTAAATCATTTAA
Found at i:60919422 original size:46 final size:46
Alignment explanation
Indices: 60919370--60919639 Score: 323
Period size: 46 Copynumber: 5.8 Consensus size: 46
60919360 GATATTTGGG
60919370 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
60919416 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *
60919462 CATCTGAACTCGTTGAGTTAAGTTCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * *
60919508 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
* * * *
60919555 CATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGAATGTG-A
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
60919600 -ATGCCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CAT-CCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60919640 GCGGGTTACA
Statistics
Matches: 188, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
44 2 0.01
45 5 0.03
46 148 0.79
47 32 0.17
48 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:60921418 original size:38 final size:39
Alignment explanation
Indices: 60921371--60921478 Score: 137
Period size: 38 Copynumber: 2.8 Consensus size: 39
60921361 TTTGAGTATA
* * *
60921371 TAATCATGTCATAATTTCAACACCATTAATATGAGT-TT
1 TAATTATGTCATAATTTAAACATCATTAATATGAGTCTT
* * *
60921409 TAATTATGTCATAATCTGAACATCATTAATATGGGTCTT
1 TAATTATGTCATAATTTAAACATCATTAATATGAGTCTT
* *
60921448 TAATTATGTCATAGTTTAAACATCTTTAATA
1 TAATTATGTCATAATTTAAACATCATTAATA
60921479 CTTGTTTTCA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
38 31 0.52
39 29 0.48
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (39 bp):
TAATTATGTCATAATTTAAACATCATTAATATGAGTCTT
Found at i:60927862 original size:26 final size:26
Alignment explanation
Indices: 60927826--60927935 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
60927816 TGATACAAAT
60927826 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
60927852 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
60927878 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
60927904 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
60927930 TGATAA
1 TGATAA
60927936 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:60930516 original size:29 final size:29
Alignment explanation
Indices: 60930474--60930555 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
60930464 TTATTTTTTT
60930474 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
60930503 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
60930532 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
60930556 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:60937352 original size:29 final size:29
Alignment explanation
Indices: 60937310--60937391 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
60937300 ATTATTTTTT
60937310 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
60937339 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
60937368 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
60937392 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:60939578 original size:27 final size:26
Alignment explanation
Indices: 60939474--60939588 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 26
60939464 TGGAGGAAGC
* *
60939474 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
60939501 GATT-TGGTGGCTCTGCCACATATATCT
1 G-TTCTGGTGGCTCTGCCACAT-TATCT
60939528 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
60939555 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
60939582 GTTCTGG
1 GTTCTGG
60939589 CAGTCATGCT
Statistics
Matches: 79, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
26 8 0.10
27 52 0.66
28 19 0.24
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:60939581 original size:54 final size:54
Alignment explanation
Indices: 60939474--60939588 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
60939464 TGGAGGAAGC
* *
60939474 GTTCTGGTGGCTATGCCACAAATATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
60939528 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
60939582 GTTCTGG
1 GTTCTGG
60939589 CAGTCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:60941131 original size:20 final size:20
Alignment explanation
Indices: 60941106--60941153 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
60941096 TTAGAGAGTT
60941106 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
60941126 ACACGGGTGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
60941146 ACACGGGC
1 ACACGGGC
60941154 TTGTGTGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.38, G:0.31, T:0.10
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:60942382 original size:27 final size:27
Alignment explanation
Indices: 60942346--60942398 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
60942336 TGTCATGTGA
* *
60942346 AATTGAATATCAAATTATTGTTACATG
1 AATTGAATATCAAATTACTATTACATG
*
60942373 AATTGAATATTAAATTACTATTACAT
1 AATTGAATATCAAATTACTATTACAT
60942399 AGGTTGTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (27 bp):
AATTGAATATCAAATTACTATTACATG
Found at i:60946030 original size:10 final size:10
Alignment explanation
Indices: 60946012--60946062 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
60946002 TAAAGGAAAA
*
60946012 GAAATGAGCT
1 GAAACGAGCT
60946022 GAAACGAGCT
1 GAAACGAGCT
*
60946032 AAAATCGAGCT
1 GAAA-CGAGCT
* *
60946043 CAGACGAGCT
1 GAAACGAGCT
60946053 GAAACGAGCT
1 GAAACGAGCT
60946063 CAAGTGAGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 26 0.76
11 8 0.24
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (10 bp):
GAAACGAGCT
Found at i:60946041 original size:21 final size:21
Alignment explanation
Indices: 60946013--60946065 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
60946003 AAAGGAAAAG
*
60946013 AAAT-GAGCTGAAACGAGCTA
1 AAATCGAGCTCAAACGAGCTA
* *
60946033 AAATCGAGCTCAGACGAGCTG
1 AAATCGAGCTCAAACGAGCTA
60946054 AAA-CGAGCTCAA
1 AAATCGAGCTCAA
60946066 GTGAGCTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.42, C:0.21, G:0.25, T:0.13
Consensus pattern (21 bp):
AAATCGAGCTCAAACGAGCTA
Found at i:60947193 original size:27 final size:27
Alignment explanation
Indices: 60947162--60947231 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
60947152 AAGTCTTTTT
60947162 ATTTTCTCTTTCATTTTCTTT-TCTTTC
1 ATTTTCTCTTTC-TTTTCTTTCTCTTTC
*
60947189 ATTTTCAT-TTTCTTTTCTTTCTTTTTC
1 ATTTTC-TCTTTCTTTTCTTTCTCTTTC
* *
60947216 ATTTTCACTTTTTTTT
1 ATTTTCTCTTTCTTTT
60947232 TCCACTCTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 8 0.22
27 28 0.76
28 1 0.03
ACGTcount: A:0.09, C:0.19, G:0.00, T:0.73
Consensus pattern (27 bp):
ATTTTCTCTTTCTTTTCTTTCTCTTTC
Found at i:60947194 original size:21 final size:21
Alignment explanation
Indices: 60947170--60947221 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
60947160 TTATTTTCTC
60947170 TTTCATTTTCTTTTCTTTCAT
1 TTTCATTTTCTTTTCTTTCAT
*
60947191 TTTCATTTTCTTTTCTTTCTT
1 TTTCATTTTCTTTTCTTTCAT
60947212 TTTCATTTTC
1 TTTCATTTTC
60947222 ACTTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTCATTTTCTTTTCTTTCAT
Found at i:60947209 original size:15 final size:16
Alignment explanation
Indices: 60947168--60947203 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
60947158 TTTTATTTTC
60947168 TCTTTCATTTTC-TTT
1 TCTTTCATTTTCATTT
60947183 TCTTTCATTTTCATTT
1 TCTTTCATTTTCATTT
60947199 TCTTT
1 TCTTT
60947204 TCTTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.72
Consensus pattern (16 bp):
TCTTTCATTTTCATTT
Found at i:60947215 original size:6 final size:5
Alignment explanation
Indices: 60947158--60947213 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
60947148 TCATAAGTCT
*
60947158 TTTTA TTTTC TCTTTC ATTTTC TTTTC -TTTC ATTTTC ATTTTC TTTTC
1 TTTTC TTTTC T-TTTC -TTTTC TTTTC TTTTC -TTTTC -TTTTC TTTTC
60947206 -TTTC TTTT
1 TTTTC TTTT
60947214 TCATTTTCAC
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
4 8 0.18
5 18 0.40
6 18 0.40
7 1 0.02
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:60947227 original size:7 final size:6
Alignment explanation
Indices: 60947157--60947227 Score: 57
Period size: 6 Copynumber: 12.7 Consensus size: 6
60947147 ATCATAAGTC
*
60947157 TTTTTA TTTTC- TCTTTCA TTTTC- TTTTC- -TTTCA TTTTCA TTTTC-
1 TTTTCA TTTTCA T-TTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA
*
60947201 TTTTC- -TTTCT TTTTCA TTTTCA CTTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA -TTTT
60947228 TTTTTCCACT
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
4 8 0.14
5 11 0.20
6 32 0.57
7 5 0.09
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.73
Consensus pattern (6 bp):
TTTTCA
Found at i:60952198 original size:40 final size:40
Alignment explanation
Indices: 60952154--60952379 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
60952144 GCTACTCGTT
* * *
60952154 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
60952194 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
*
60952234 CCAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
*
60952274 CAAATGCCTTCAGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * *
60952314 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
60952355 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
60952380 CATCATTCGA
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 155 0.91
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:60957000 original size:10 final size:10
Alignment explanation
Indices: 60956987--60957037 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
60956977 TAAATGAAAA
*
60956987 GAAATGAGCT
1 GAAACGAGCT
60956997 GAAACGAGCT
1 GAAACGAGCT
*
60957007 AAAATCGAGCT
1 GAAA-CGAGCT
*
60957018 CAAACGAGCT
1 GAAACGAGCT
*
60957028 AAAACGAGCT
1 GAAACGAGCT
60957038 CAAGTGAGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
10 27 0.75
11 9 0.25
ACGTcount: A:0.43, C:0.20, G:0.24, T:0.14
Consensus pattern (10 bp):
GAAACGAGCT
Found at i:60957047 original size:20 final size:21
Alignment explanation
Indices: 60956988--60957040 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
60956978 AAATGAAAAG
*
60956988 AAAT-GAGCTGAAACGAGCTA
1 AAATCGAGCTCAAACGAGCTA
60957008 AAATCGAGCTCAAACGAGCTA
1 AAATCGAGCTCAAACGAGCTA
60957029 AAA-CGAGCTCAA
1 AAATCGAGCTCAA
60957041 GTGAGCTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.45, C:0.21, G:0.21, T:0.13
Consensus pattern (21 bp):
AAATCGAGCTCAAACGAGCTA
Found at i:60958908 original size:49 final size:49
Alignment explanation
Indices: 60958777--60959050 Score: 385
Period size: 49 Copynumber: 5.7 Consensus size: 49
60958767 CCCTTCGGGA
* * * *
60958777 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
60958824 CCTATCACATA--TATGCACTTTCACATTCATGACATTGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATTGGCCATTAGGC
*
60958871 CTTATCACATATGTATACGCTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60958920 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60958969 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
60959018 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATATGTATACACTTTCACATTCATC
60959051 GCGTAAAATC
Statistics
Matches: 208, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 49 0.24
49 159 0.76
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (49 bp):
CTTATCACATATGTATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:60962792 original size:40 final size:40
Alignment explanation
Indices: 60962688--60962877 Score: 348
Period size: 40 Copynumber: 4.8 Consensus size: 40
60962678 CCAGCATGAT
* *
60962688 TGCTCTTCGGGAC-TAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
60962727 TGCTCTTCGG-ACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
60962766 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
60962806 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
60962846 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
60962878 CTCAATTCTC
Statistics
Matches: 148, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
38 2 0.01
39 45 0.30
40 101 0.68
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:60966964 original size:27 final size:27
Alignment explanation
Indices: 60966934--60966988 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
60966924 GGTCCACAAC
* *
60966934 CCCTTATTAAGCACTAACAAATCCATA
1 CCCTTACTAAACACTAACAAATCCATA
60966961 CCCTTACTAAACACTAACAAATCCATA
1 CCCTTACTAAACACTAACAAATCCATA
60966988 C
1 C
60966989 TTCTTCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.33, G:0.02, T:0.24
Consensus pattern (27 bp):
CCCTTACTAAACACTAACAAATCCATA
Found at i:60967050 original size:28 final size:28
Alignment explanation
Indices: 60966992--60967110 Score: 123
Period size: 28 Copynumber: 4.2 Consensus size: 28
60966982 TCCATACTTC
* * *
60966992 TTCATTTGGCCCATTTAGGCCCAATCTCA
1 TTCATATGGCCCA-TTCGGCCCAATCACA
* *
60967021 TTTATATGGCCCA-TCGAGCCCACTCACA
1 TTCATATGGCCCATTCG-GCCCAATCACA
* *
60967049 TTCATATGGCCCATTTGGCCCAATCACC
1 TTCATATGGCCCATTCGGCCCAATCACA
* *
60967077 TTCATATGGCCCGTTAGGCCCAATCACA
1 TTCATATGGCCCATTCGGCCCAATCACA
*
60967105 CTCATA
1 TTCATA
60967111 GTCATGCAAT
Statistics
Matches: 75, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.03
28 60 0.80
29 13 0.17
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.29
Consensus pattern (28 bp):
TTCATATGGCCCATTCGGCCCAATCACA
Found at i:60967098 original size:56 final size:57
Alignment explanation
Indices: 60966992--60967110 Score: 143
Period size: 56 Copynumber: 2.1 Consensus size: 57
60966982 TCCATACTTC
* * * * *
60966992 TTCATTTGGCCCATTTAGGCCCAATCTCATTTATATGGCCCATCGAGCCCACTCACA
1 TTCATATGGCCCATTTAGGCCCAATCACATTCATATGGCCCATAGAGCCCAATCACA
* *
60967049 TTCATATGGCCCATTT-GGCCCAATCACCTTCATATGGCCCGTTAG-GCCCAATCACA
1 TTCATATGGCCCATTTAGGCCCAATCACATTCATATGGCCC-ATAGAGCCCAATCACA
*
60967105 CTCATA
1 TTCATA
60967111 GTCATGCAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 36 0.68
57 17 0.32
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.29
Consensus pattern (57 bp):
TTCATATGGCCCATTTAGGCCCAATCACATTCATATGGCCCATAGAGCCCAATCACA
Found at i:60977526 original size:27 final size:26
Alignment explanation
Indices: 60977489--60977603 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
60977479 GCATGGCTGA
* * *
60977489 CAGAACAGATATTGTGACTGAGTCAC
1 CAGAACAGATATTGTGGCAGAGCCAC
60977515 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGA-ACAGATATTGTGGCAGAGCCAC
* *
60977542 CAAAAATAGATATTTGTGGCAGAGCCAC
1 C-AGAACAGATA-TTGTGGCAGAGCCAC
*
60977570 CAGAACAGATATTTGTGGCAGAGCAAC
1 CAGAACAGATA-TTGTGGCAGAGCCAC
60977597 CAGAACA
1 CAGAACA
60977604 CTTCCTCCAT
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 4 0.05
27 56 0.72
28 18 0.23
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGAACAGATATTGTGGCAGAGCCAC
Found at i:60977586 original size:55 final size:54
Alignment explanation
Indices: 60977495--60977598 Score: 147
Period size: 55 Copynumber: 1.9 Consensus size: 54
60977485 CTGACAGAAC
* * *
60977495 AGATATTGTGACTGAGTCACCAGATACAGATATTGTGGCAGAGCCACCAAAAAT
1 AGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCAACCAAAAAT
*
60977549 AGATATTTGTGGCAGAGCCACCAGA-ACAGATATTTGTGGCAGAGCAACCA
1 AGATA-TTGTGACAGAGCCACCAGATACAGATA-TTGTGGCAGAGCAACCA
60977599 GAACACTTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
54 12 0.27
55 32 0.73
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
AGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCAACCAAAAAT
Found at i:60982183 original size:40 final size:39
Alignment explanation
Indices: 60982018--60982201 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
60982008 AAATTGAATG
* * *
60982018 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
60982058 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
60982098 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
60982138 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
60982177 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
60982202 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:60982226 original size:80 final size:81
Alignment explanation
Indices: 60982058--60982246 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
60982048 GCTGGAAATT
* * * *
60982058 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
60982123 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
60982139 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
60982202 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
60982218 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
60982247 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:60990106 original size:40 final size:39
Alignment explanation
Indices: 60989941--60990124 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
60989931 AAATTGAATG
* * *
60989941 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
60989981 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
60990021 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
60990061 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
60990100 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
60990125 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:60990149 original size:80 final size:81
Alignment explanation
Indices: 60989981--60990169 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
60989971 GCTGGAAATT
* * * *
60989981 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
60990046 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
60990062 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
60990125 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
60990141 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
60990170 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:60994017 original size:29 final size:29
Alignment explanation
Indices: 60993984--60994048 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
60993974 GTGACGAGAT
60993984 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
60994013 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
60994042 CGGCACT
1 TGGCACT
60994049 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Done.