Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 205 of 770
Found at i:61310061 original size:40 final size:40
Alignment explanation
Indices: 61309983--61310206 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
61309973 ACCCAAGTAT
* *
61309983 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
61310022 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
61310062 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
61310102 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
61310145 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
61310185 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
61310207 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:61310179 original size:83 final size:80
Alignment explanation
Indices: 61309983--61310206 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
61309973 ACCCAAGTAT
* * * *
61309983 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
61310047 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
61310062 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
61310126 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
61310145 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
61310207 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:61318254 original size:40 final size:40
Alignment explanation
Indices: 61318176--61318399 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
61318166 ACCCAAGTAT
* *
61318176 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
61318215 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
61318255 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
61318295 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
61318338 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
61318378 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
61318400 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:61318372 original size:83 final size:80
Alignment explanation
Indices: 61318176--61318399 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
61318166 ACCCAAGTAT
* * * *
61318176 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
61318240 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
61318255 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
61318319 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
61318338 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
61318400 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:61319393 original size:40 final size:41
Alignment explanation
Indices: 61319338--61319420 Score: 150
Period size: 40 Copynumber: 2.0 Consensus size: 41
61319328 CATCTTCATT
61319338 TCGGCTATTACACATATATACACTAGCAATC-ATACTAACA
1 TCGGCTATTACACATATATACACTAGCAATCAATACTAACA
61319378 TCGGCTATTACACATATATACACTAGCAATCAAATACTAACA
1 TCGGCTATTACACATATATACACTAGCAATC-AATACTAACA
61319420 T
1 T
61319421 TTGCACTTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 31 0.76
42 10 0.24
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (41 bp):
TCGGCTATTACACATATATACACTAGCAATCAATACTAACA
Found at i:61323213 original size:80 final size:80
Alignment explanation
Indices: 61323129--61323277 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
61323119 TATGGTAACC
* * * *
61323129 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
61323193 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
61323209 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
61323274 CCGG
66 CCGG
61323278 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:61323219 original size:40 final size:38
Alignment explanation
Indices: 61323170--61323277 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
61323160 ATCACGATTT
*
61323170 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
61323210 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
61323250 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
61323278 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:61331248 original size:80 final size:80
Alignment explanation
Indices: 61331164--61331312 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
61331154 TATGGTAACC
* * * *
61331164 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
61331228 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
61331244 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
61331309 CCGG
66 CCGG
61331313 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:61331254 original size:40 final size:38
Alignment explanation
Indices: 61331205--61331312 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
61331195 ATCACGATTT
*
61331205 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
61331245 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
61331285 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
61331313 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:61337796 original size:40 final size:40
Alignment explanation
Indices: 61337752--61337900 Score: 280
Period size: 40 Copynumber: 3.7 Consensus size: 40
61337742 GCTACTTGCT
61337752 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
61337792 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
61337832 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
61337872 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
61337901 CATCCGAATA
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:61342737 original size:40 final size:39
Alignment explanation
Indices: 61342610--61342739 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
61342600 ATGCTGGAAA
* *
61342610 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
61342650 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
61342690 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
61342730 TTATATCCGG
1 TTATATCCGG
61342740 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:61350733 original size:39 final size:40
Alignment explanation
Indices: 61350685--61350784 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 40
61350675 ATATCGGGTT
*
61350685 AAGACCCGAAGGCAATT-GTGCTAGCGGCTAC-ATCCGGGCG
1 AAGACCCGAAGGCAATTCGTGCAAGC-G-TACTATCCGGGCG
* *
61350725 AAGA-CCGAAGGC-ATTCGTGCAAGCGTTCTATCCGGGCT
1 AAGACCCGAAGGCAATTCGTGCAAGCGTACTATCCGGGCG
61350763 AAGACCCGAAGGC-ATTCGTGCA
1 AAGACCCGAAGGCAATTCGTGCA
61350785 CATGGTTATA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
37 2 0.04
38 16 0.30
39 32 0.59
40 4 0.07
ACGTcount: A:0.26, C:0.27, G:0.30, T:0.17
Consensus pattern (40 bp):
AAGACCCGAAGGCAATTCGTGCAAGCGTACTATCCGGGCG
Found at i:61363758 original size:39 final size:40
Alignment explanation
Indices: 61363704--61363857 Score: 197
Period size: 41 Copynumber: 3.9 Consensus size: 40
61363694 TTATTTGATG
61363704 TGGAATTGTATCCGGGCTTAAAGACCCGCA-GCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
61363743 TGGAATTGTATCCGGGCTTAAAGACCGAGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACC-CGCAGGCTTCGTGC
* * *
61363784 TGGAATTGTATCCGGGCCTTAAAGATCCGCAGGCGTCGTAC
1 TGGAATTGTATCCGGG-CTTAAAGACCCGCAGGCTTCGTGC
* * *
61363825 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
61363858 GTGCTAAATA
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 39 0.39
40 5 0.05
41 48 0.48
42 9 0.09
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:61363855 original size:80 final size:80
Alignment explanation
Indices: 61363704--61363857 Score: 206
Period size: 80 Copynumber: 1.9 Consensus size: 80
61363694 TTATTTGATG
* * * *
61363704 TGGAATTGTATCCGGGCTTAAAGACCCGCAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGCGTCGTACTGGAATTGCATCCGGGCTTAAAAACC
61363769 GAGCAGGCTTCGTGC
66 GAGCAGGCTTCGTGC
*
61363784 TGGAATTGTATCCGGGCCTTAAAGATCCGCAGGCGTCGTACTGGAA-TGACATCCGGG-TTAAAA
1 TGGAATTGTATCCGGG-CTTAAAGACCCGCA-GCGTCGTACTGGAATTG-CATCCGGGCTTAAAA
*
61363847 ACC-TGCAGGCT
63 ACCGAGCAGGCT
61363858 GTGCTAAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
80 23 0.35
81 23 0.35
82 19 0.29
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (80 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGCGTCGTACTGGAATTGCATCCGGGCTTAAAAACC
GAGCAGGCTTCGTGC
Found at i:61364185 original size:2 final size:2
Alignment explanation
Indices: 61364178--61364210 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
61364168 TGTATTCATG
61364178 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
61364211 TCGGCCAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:61365650 original size:24 final size:24
Alignment explanation
Indices: 61365598--61365763 Score: 212
Period size: 24 Copynumber: 7.0 Consensus size: 24
61365588 ACTTTATCAT
*
61365598 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * * *
61365623 ATAACTGGGGAAAAATCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
61365647 ATAACTGAGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
61365670 ATAACTGGGGCCTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
61365694 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
61365718 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
61365741 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61365764 TCACTTCCTC
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 42 0.34
24 70 0.57
25 11 0.09
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:61365673 original size:47 final size:48
Alignment explanation
Indices: 61365597--61365763 Score: 205
Period size: 47 Copynumber: 3.5 Consensus size: 48
61365587 TACTTTATCA
* * * *
61365597 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAATCCCTTTT
1 TATAACT-GAGGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
61365646 TATAACTGAGGCATAAGCCC-TTTAATAACTGGGGCCTAAGCCCTTTT
1 TATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
61365693 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
61365740 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGAGGCATAAGCCCTTTT
61365764 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 67 0.63
48 28 0.26
49 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
TATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:61365715 original size:71 final size:71
Alignment explanation
Indices: 61365598--61365763 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
61365588 ACTTTATCAT
* *
61365598 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAATCCCTTTTTATAACTGAGGCATAA
1 ATAACTGG-GGCCTAAGCC-CTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGAGGCATAA
61365662 GCCCTTTA
64 GCCCTTTA
* * * *
61365670 ATAACTGGGGCCTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCCTAAGCCCTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGAGGCATAAGC
61365735 CCTTTA
66 CCTTTA
*
61365741 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCCTAAGCCCTTTT
61365764 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 74 0.86
72 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCCTAAGCCCTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGAGGCATAAGC
CCTTTA
Found at i:61365838 original size:20 final size:20
Alignment explanation
Indices: 61365813--61365879 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
61365803 TTATGAATAC
61365813 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
61365833 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
61365853 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
61365873 ACCATGT
1 ATCATGT
61365880 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:61365844 original size:11 final size:11
Alignment explanation
Indices: 61365813--61365868 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
61365803 TTATGAATAC
61365813 ATCATGTGCAT
1 ATCATGTGCAT
*
61365824 ATCA--TACAT
1 ATCATGTGCAT
61365833 ATCATGTGCAT
1 ATCATGTGCAT
*
61365844 ATCA--TACAT
1 ATCATGTGCAT
*
61365853 GTCATGTGCAT
1 ATCATGTGCAT
61365864 ATCAT
1 ATCAT
61365869 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:61365948 original size:25 final size:25
Alignment explanation
Indices: 61365916--61365963 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61365906 ATACATAAAC
* * *
61365916 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
61365941 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
61365964 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:61367132 original size:26 final size:27
Alignment explanation
Indices: 61367099--61367159 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
61367089 TCATACGGAA
*
61367099 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGCA-ATTACGGTCACTTTAC
*
61367124 CATACAGGGGAATTACGGTCACTTTAC
1 CATACAGGGCAATTACGGTCACTTTAC
*
61367151 CCTACAGGG
1 CATACAGGG
61367160 GCTTTACGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 7 0.23
26 6 0.20
27 17 0.57
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (27 bp):
CATACAGGGCAATTACGGTCACTTTAC
Found at i:61367144 original size:27 final size:27
Alignment explanation
Indices: 61367114--61367178 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
61367104 GGGCATATTC
61367114 GTCATTTTACCATACAGGGGAATTACG
1 GTCATTTTACCATACAGGGGAATTACG
* * **
61367141 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGAATTACG
*
61367168 GTCTTTTTACC
1 GTCATTTTACC
61367179 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGAATTACG
Found at i:61367262 original size:27 final size:27
Alignment explanation
Indices: 61367232--61367506 Score: 131
Period size: 27 Copynumber: 10.1 Consensus size: 27
61367222 GTAAATCTAC
61367232 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
61367259 AAACCAATGGTATTTCTA-TCATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
61367285 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** **
61367315 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** * * ***
61367342 AAATTGAGGGTATTCCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
** **
61367369 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ** **
61367396 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
61367423 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * *** *
61367450 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *** *
61367477 AAATCAAGGGTAAAACAGTAATTATGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
61367504 AAA
1 AAA
61367507 TCGAGGTTAA
Statistics
Matches: 201, Mismatches: 41, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 1 0.00
27 176 0.88
28 7 0.03
29 16 0.08
30 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:61367380 original size:54 final size:54
Alignment explanation
Indices: 61367322--61367461 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
61367312 TGTAAATCAG
61367322 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTCCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTCCGGTAATTTCACAAACCAA
* ** *
61367376 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTCCGGTAATTTCACAAACCAA
* ** *
61367430 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
61367462 AAACAGTAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTCCGGTAATTTCACAAACCAA
Found at i:61367444 original size:81 final size:79
Alignment explanation
Indices: 61367185--61367446 Score: 197
Period size: 81 Copynumber: 3.2 Consensus size: 79
61367175 TACCTATTAG
* ** ** * * * **
61367185 GGGTATTTTAGTCATTTCATCCTACAAGGGTGCTTTGGTAAATCTACAAACCAAGGGTATTTCAG
1 GGGTATTTTAGTAATTTCA-CAAACAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGG
**
61367250 TAATTTTGTAAACCAA
64 TAATTTTACAAACCAA
* * * * *
61367266 TGGTATTTCTA-TCATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGTA-AATCAGGGGTAT
1 GGGTATTT-TAGT-AATTTCACAAA--CAAGGGTATTT-TGGTAA-TTT-TACAAACAGGGGTAT
***
61367328 TTTGGTAATTTTACAAATTGA
59 TTTGGTAATTTTACAAACCAA
***
61367349 GGGTATTCCGGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAA-CAAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGG
61367414 TAATTTTACAAACCAA
64 TAATTTTACAAACCAA
61367430 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
61367447 TGTAAATCGA
Statistics
Matches: 135, Mismatches: 35, Indels: 22
0.70 0.18 0.11
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 64 0.47
82 14 0.10
83 42 0.31
84 4 0.03
85 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (79 bp):
GGGTATTTTAGTAATTTCACAAACAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTA
ATTTTACAAACCAA
Found at i:61367471 original size:54 final size:54
Alignment explanation
Indices: 61367322--61367526 Score: 151
Period size: 54 Copynumber: 3.8 Consensus size: 54
61367312 TGTAAATCAG
* * *** *
61367322 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTCCGGTAATTTCACAAACCAA
1 GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
* * ****
61367376 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTAGTAATTTTACAAATCGA-GGGTAAAACGGTAATTTTACAAACCAA
** * * ** *
61367430 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
**** * ** *
61367484 GGGTAAAACAGTAATTATGTAAATCGAGGTTAAAACGGTAATT
1 GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATT
61367527 ATGTAAATCG
Statistics
Matches: 124, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.98
55 2 0.02
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
Found at i:61367569 original size:27 final size:27
Alignment explanation
Indices: 61367439--61367561 Score: 165
Period size: 27 Copynumber: 4.6 Consensus size: 27
61367429 AGGGTATTTT
*
61367439 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
* *
61367466 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
*
61367493 AGTAATTATGTAAATCGAGGTTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
* * *
61367520 GGTAATTATGTAAATCGGGGGTAAAAT
1 AGTAATTATGTAAATCGAGGGTAAAAC
* *
61367547 GGTAATTCTGTAAAT
1 AGTAATTATGTAAAT
61367562 TGGGGGTACT
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AGTAATTATGTAAATCGAGGGTAAAAC
Found at i:61367605 original size:27 final size:27
Alignment explanation
Indices: 61367575--61367637 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
61367565 GGGTACTTTG
*
61367575 GTAATTTTACAAGTCGAAGGCATTTCA
1 GTAATTTTACAAATCGAAGGCATTTCA
* *
61367602 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGCATTTCA
*
61367629 GTATTTTTA
1 GTAATTTTA
61367638 TAAACTAAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGCATTTCA
Found at i:61369089 original size:21 final size:23
Alignment explanation
Indices: 61369060--61369101 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
61369050 TTTAGCAAGA
*
61369060 ACAACATT-AATCATAGAAACAG
1 ACAACATTAAATCACAGAAACAG
61369082 ACAA-ATTAAATCACAGAAAC
1 ACAACATTAAATCACAGAAAC
61369102 TTCGCAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.57, C:0.19, G:0.07, T:0.17
Consensus pattern (23 bp):
ACAACATTAAATCACAGAAACAG
Found at i:61381750 original size:28 final size:28
Alignment explanation
Indices: 61381718--61381786 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
61381708 GCGTAGATCA
61381718 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
61381746 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
61381774 CGATA-TACCCCTA
1 CGAAATTACCCCTA
61381787 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:61388067 original size:20 final size:20
Alignment explanation
Indices: 61388042--61388079 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
61388032 GTTTATTCGC
*
61388042 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
61388062 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
61388080 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:61389638 original size:27 final size:26
Alignment explanation
Indices: 61389607--61389661 Score: 101
Period size: 27 Copynumber: 2.1 Consensus size: 26
61389597 AGCGTAGATC
61389607 ACGAAATTACCCCTAAAGAGCAAAATT
1 ACGAAATTACCCCTAAAGAGC-AAATT
61389634 ACGAAATTACCCCTAAAGAGCAAATT
1 ACGAAATTACCCCTAAAGAGCAAATT
61389660 AC
1 AC
61389662 CATATACCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.47, C:0.24, G:0.11, T:0.18
Consensus pattern (26 bp):
ACGAAATTACCCCTAAAGAGCAAATT
Found at i:61391209 original size:41 final size:41
Alignment explanation
Indices: 61391042--61391212 Score: 170
Period size: 41 Copynumber: 4.2 Consensus size: 41
61391032 GGTCTAAATC
61391042 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
* * * * * *
61391083 CGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAAC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
* * * * * *
61391123 CG-GACTTAGT-TCCAAAGGGCCTTCGAGCCAGTGGT-CTAAT
1 CGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGTGCTAATAAT
*
61391163 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAAGAAT
1 -CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
61391205 CGAGCTTG
1 CGAGCTTG
61391213 ATTCTGAAGG
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
39 1 0.01
40 34 0.33
41 64 0.62
42 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
Found at i:61399574 original size:41 final size:41
Alignment explanation
Indices: 61399516--61399663 Score: 176
Period size: 41 Copynumber: 3.6 Consensus size: 41
61399506 GAGCTTGGTC
61399516 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * *
61399557 TCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
61399597 CCGAAGGGCCTTCGAGCCAGTGGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
61399638 TCGAAGGGCTTTTGAGCCAGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
61399664 GAATCGGCTT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
39 4 0.04
40 35 0.39
41 48 0.53
43 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:61399680 original size:81 final size:80
Alignment explanation
Indices: 61399517--61399684 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 80
61399507 AGCTTGGTCT
* * * *
61399517 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTGTCA
1 CGAAGGGCCTTCGAGCCAGTGCTAAT-ACCGAACTTAGTCTCGAAGGGCTTTAGAGCCAGTGTAA
*
61399582 TAACCGGACTTAGTTC
65 GAACCGGACTTAGTTC
* * *
61399598 CGAAGGGCCTTCGAGCCAGTGGTCTAAT-CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCT
1 CGAAGGGCCTTCGAGCCAGT-G-CTAATACCGAACTTAGTCTCGAAGGGCTTTAGAGCCAGTG-T
*
61399662 AAGAATCGG-CTT-GATTC
63 AAGAACCGGACTTAG-TTC
61399679 CGAAGG
1 CGAAGG
61399685 ATGTTTGTGC
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
80 1 0.01
81 60 0.81
82 8 0.11
83 5 0.07
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
CGAAGGGCCTTCGAGCCAGTGCTAATACCGAACTTAGTCTCGAAGGGCTTTAGAGCCAGTGTAAG
AACCGGACTTAGTTC
Found at i:61403179 original size:55 final size:55
Alignment explanation
Indices: 61403075--61403179 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 55
61403065 CGACCATGCC
* * * *
61403075 AAAACAACACGGGCGTGCAACATGCCCGTGTGGAAGAACCGTGGATGAACCTGTT
1 AAAACAACACGGGCATGCAACACGCCCGTGTCGAACAACCGTGGATGAACCTGTT
* * * *
61403130 AAAACAACACGGGCATGCGACACGCCTGTGTCTAACACCCGTCGG-TGAAC
1 AAAACAACACGGGCATGCAACACGCCCGTGTCGAACAACCGT-GGATGAAC
61403180 TTGTGACAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
55 39 0.95
56 2 0.05
ACGTcount: A:0.30, C:0.28, G:0.27, T:0.15
Consensus pattern (55 bp):
AAAACAACACGGGCATGCAACACGCCCGTGTCGAACAACCGTGGATGAACCTGTT
Found at i:61404928 original size:29 final size:29
Alignment explanation
Indices: 61404895--61404997 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
61404885 GTGACGAGAT
61404895 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
61404924 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
61404953 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
61404982 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
61404998 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:61410708 original size:46 final size:46
Alignment explanation
Indices: 61410641--61410766 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
61410631 AACCCGCCCC
* *
61410641 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
*
61410687 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
*
61410733 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
61410767 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
Found at i:61410785 original size:46 final size:45
Alignment explanation
Indices: 61410643--61410785 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
61410633 CCCGCCCCTA
** * *
61410643 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCACCATCC-T
*** * *
61410688 AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTC-GCATTCAT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCACCA-TCCT
*
61410734 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-ACCATCCT
61410781 AGTGA
1 AGTGA
61410786 CATGTCACTT
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
46 78 0.92
47 5 0.06
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCACCATCCT
Found at i:61418260 original size:93 final size:93
Alignment explanation
Indices: 61418148--61418318 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
61418138 GCCCCTAAGT
* *
61418148 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61418213 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
61418241 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
61418306 CGAGTTCGGATGC
66 CGAGCTCGGATGC
61418319 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:61418315 original size:46 final size:46
Alignment explanation
Indices: 61418143--61418315 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
61418133 TAACCGCCCC
* *
61418143 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
*
61418189 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCA
* * *
61418237 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
*
61418282 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
61418316 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
Found at i:61421537 original size:41 final size:41
Alignment explanation
Indices: 61421480--61421576 Score: 167
Period size: 41 Copynumber: 2.4 Consensus size: 41
61421470 GGTACTTGGT
*
61421480 AGCTTGTGTGAGCAGCACCGTGTAGCTACATCCTGACTGAC
1 AGCTTGTGTGAGCAGCACCATGTAGCTACATCCTGACTGAC
* *
61421521 AGCTTGTGTGAGCAGCACCATGTAGCTACGTCTTGACTGAC
1 AGCTTGTGTGAGCAGCACCATGTAGCTACATCCTGACTGAC
61421562 AGCTTGTGTGAGCAG
1 AGCTTGTGTGAGCAG
61421577 GCCCGTTTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (41 bp):
AGCTTGTGTGAGCAGCACCATGTAGCTACATCCTGACTGAC
Found at i:61428357 original size:39 final size:40
Alignment explanation
Indices: 61428314--61428480 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
61428304 CGGAATATAA
61428314 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTC-TAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61428353 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61428393 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
61428433 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61428473 CCGGATAT
1 CCGGATAT
61428481 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
38 1 0.01
39 30 0.28
40 75 0.71
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61435563 original size:39 final size:40
Alignment explanation
Indices: 61435520--61435686 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
61435510 CGGAATATAA
61435520 CCGGATATAATCACGT-GCACAAATGCCTTC-GGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61435559 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61435599 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
61435639 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61435679 CCGGATAT
1 CCGGATAT
61435687 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
38 1 0.01
39 25 0.24
40 80 0.75
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61436965 original size:27 final size:28
Alignment explanation
Indices: 61436909--61436978 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
61436899 AAATTTGTAC
61436909 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
61436937 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
61436964 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
61436979 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:61436989 original size:27 final size:27
Alignment explanation
Indices: 61436909--61436990 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
61436899 AAATTTGTAC
* *
61436909 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
61436937 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
61436964 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
61436991 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:61440560 original size:27 final size:27
Alignment explanation
Indices: 61440519--61440664 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
61440509 TGGATAAGTT
**
61440519 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
61440546 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
61440573 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
61440600 ATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
61440627 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
61440654 GTAAAATTACC
1 GTAGAATTACC
61440665 ATTTTTCCCC
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:61443039 original size:39 final size:39
Alignment explanation
Indices: 61442982--61443172 Score: 337
Period size: 39 Copynumber: 4.9 Consensus size: 39
61442972 ATGTATGAGA
*
61442982 CTAGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
*
61443021 CTGGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
*
61443060 CTAGAAATATATCCGGACATGAGGTCCGTAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
*
61443099 CTGGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
*
61443138 CTAGAAATATATCCGGACTTGAGGTCCGCAGGCTA
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTA
61443173 CGTGCTGAAA
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 144 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (39 bp):
CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
Found at i:61444619 original size:33 final size:32
Alignment explanation
Indices: 61444570--61444633 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
61444560 CTCGCTGCAA
* *
61444570 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
61444603 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
61444634 GTGACTCCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:61447125 original size:25 final size:25
Alignment explanation
Indices: 61447097--61447147 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
61447087 AAACCCCCTT
61447097 TATTTTTATTAAAGAAATAAAATTA
1 TATTTTTATTAAAGAAATAAAATTA
61447122 TATTTTTATTAAAGAAATAAAATTA
1 TATTTTTATTAAAGAAATAAAATTA
61447147 T
1 T
61447148 CATTGCTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (25 bp):
TATTTTTATTAAAGAAATAAAATTA
Found at i:61450276 original size:19 final size:19
Alignment explanation
Indices: 61450230--61450275 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
61450220 TCTCTCTACT
*
61450230 TCTCGTTTTATCGCTTTTC
1 TCTCGTTTTATCACTTTTC
*
61450249 TCTCGTTTTATCATTTTTC
1 TCTCGTTTTATCACTTTTC
61450268 TCTC-TTTT
1 TCTCGTTTT
61450276 TGAGGTCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.07, C:0.24, G:0.07, T:0.63
Consensus pattern (19 bp):
TCTCGTTTTATCACTTTTC
Found at i:61454698 original size:20 final size:19
Alignment explanation
Indices: 61454668--61454721 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
61454658 GGTGCCGAAA
* * *
61454668 TTTTGCTTCTCTTTTCTTC
1 TTTTTCTTCTCTTTTATCC
61454687 TTTCTTCTTCTCGTTTTATCC
1 TTT-TTCTTCTC-TTTTATCC
61454708 TTTTTC-TCTCTTTT
1 TTTTTCTTCTCTTTT
61454722 TGAGGCTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.13
19 7 0.23
20 10 0.33
21 9 0.30
ACGTcount: A:0.02, C:0.26, G:0.04, T:0.69
Consensus pattern (19 bp):
TTTTTCTTCTCTTTTATCC
Found at i:61458336 original size:27 final size:28
Alignment explanation
Indices: 61458272--61458340 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
61458262 GCGTAGATCA
*
61458272 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCTTAAAGAGCAAAATTAC
61458300 CGAAATTACCCTTAAAGAGCAAAATTAC
1 CGAAATTACCCTTAAAGAGCAAAATTAC
*
61458328 CGATA-TACCCTTA
1 CGAAATTACCCTTA
61458341 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCTTAAAGAGCAAAATTAC
Found at i:61459698 original size:26 final size:26
Alignment explanation
Indices: 61459640--61459691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
61459630 CCTAGTTGAT
61459640 AAAATGACTATTATGCCCCTACTGAG
1 AAAATGACTATTATGCCCCTACTGAG
*
61459666 AAAATGACTGTTATGCCCCTA-TGAG
1 AAAATGACTATTATGCCCCTACTGAG
61459691 A
1 A
61459692 TGTATGATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (26 bp):
AAAATGACTATTATGCCCCTACTGAG
Found at i:61464970 original size:123 final size:123
Alignment explanation
Indices: 61464751--61465089 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
61464741 GAATTATGTG
*
61464751 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
61464816 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
61464874 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
61464939 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
61464997 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
61465062 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
61465090 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:61465113 original size:40 final size:40
Alignment explanation
Indices: 61465058--61465301 Score: 283
Period size: 40 Copynumber: 6.1 Consensus size: 40
61465048 TGAATGATAC
* * * * **
61465058 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
61465098 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
* *
61465138 CCAGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
61465178 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * *
61465218 CCGGGCTAATACCTGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
61465258 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
61465298 CCGG
1 CCGG
61465302 TTGTATTCTG
Statistics
Matches: 178, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 176 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:61469663 original size:29 final size:29
Alignment explanation
Indices: 61469628--61469701 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
61469618 GTTGTGAGAT
* *
61469628 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
61469657 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
61469686 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61469702 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:61477086 original size:2 final size:2
Alignment explanation
Indices: 61477079--61477114 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
61477069 AGTATAGTTG
* *
61477079 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61477115 TCGGCCATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:61477789 original size:29 final size:29
Alignment explanation
Indices: 61477754--61477827 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
61477744 GTTGTGAGAT
* *
61477754 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
61477783 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
61477812 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61477828 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:61484209 original size:79 final size:80
Alignment explanation
Indices: 61484025--61484248 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
61484015 CGGATGATAA
*
61484025 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAATGGCTA--AT-TCCGGGCTAAGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGC-AA--GCTACTATATCCGGGCTAAGTCCCGAAGGCA
*
61484086 TTCGTACGAGCTACTATAT
62 TTTGTACGAGCTACTATAT
* * * *
61484105 TCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
61484170 TGCGAGTTATTATA-
66 TACGAGCTACTATAT
* *
61484184 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
61484249 AGCTAGTGGC
Statistics
Matches: 126, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
77 4 0.03
79 62 0.49
80 58 0.46
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TACGAGCTACTATAT
Found at i:61484262 original size:40 final size:39
Alignment explanation
Indices: 61484025--61484271 Score: 243
Period size: 40 Copynumber: 6.2 Consensus size: 39
61484015 CGGATGATAA
* * *
61484025 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAATGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGT-ACTATA-T
*
61484065 CCGGGCTAAGTCCCGAAGGCATTCGTA-CGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TACTATAT
* * * *
61484105 TCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATAT
* *
61484145 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATAT
* * *
61484184 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATAT
* *
61484224 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-ACTATAT
61484264 CC-GGCTAA
1 CCGGGCTAA
61484272 ACTCCGAAGG
Statistics
Matches: 182, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
39 44 0.24
40 133 0.73
41 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTACTATAT
Found at i:61484281 original size:79 final size:78
Alignment explanation
Indices: 61484065--61484271 Score: 247
Period size: 79 Copynumber: 2.6 Consensus size: 78
61484055 ATGGCTAATT
* * *
61484065 CCGGGCTAAGTCCCGAAGGCATTCGTA-CGAGCTACTATATTCGGGCTAAGTCCCGAAGGCGTTT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TACTATA-TCCGGCTAAGTCCCGAAGGCATTT
* * *
61484129 GTGCGAGCTATTATAT
63 GTGCAAGCTACTATAA
* *
61484145 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATATCC-GGCTAAGTCCCGAAGGCATTTG
*
61484209 TGCAAGTTACTATAA
64 TGCAAGCTACTATAA
* *
61484224 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-ACTATATCCGGCTAA
61484272 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
78 2 0.02
79 71 0.65
80 36 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTACTATATCCGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAA
Found at i:61485980 original size:76 final size:76
Alignment explanation
Indices: 61485894--61486048 Score: 283
Period size: 76 Copynumber: 2.0 Consensus size: 76
61485884 ATTAACAATC
*
61485894 AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGTATATAATGCTCATGGTG
1 AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGCATATAATGCTCATGGTG
61485959 TACTATTACAT
66 TACTATTACAT
* *
61485970 AAAGTACATGTATATATGTACACATAATTATCAATTTTTCAAAAATGCATATAATGGTCATGGTG
1 AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGCATATAATGCTCATGGTG
61486035 TACTATTACAT
66 TACTATTACAT
61486046 AAA
1 AAA
61486049 ATCACTATTC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (76 bp):
AAAGTACATGTATATACGTACACATAATTATCAATTTTTCAAAAATGCATATAATGCTCATGGTG
TACTATTACAT
Found at i:61488092 original size:20 final size:20
Alignment explanation
Indices: 61488028--61488094 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
61488018 ATTTTGATAA
*
61488028 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
61488048 ACATAACATGTATGATATGC
1 ACATGATATGTATGATATGC
61488068 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
61488088 ACATGAT
1 ACATGAT
61488095 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:61488178 original size:25 final size:25
Alignment explanation
Indices: 61488149--61488239 Score: 150
Period size: 25 Copynumber: 3.7 Consensus size: 25
61488139 AATGTAAAAA
61488149 GGCTTATGCCCCAGTTATGATAAAG
1 GGCTTATGCCCCAGTTATGATAAAG
61488174 GGCTTATGCCCCAGTTATGATAAAG
1 GGCTTATGCCCCAGTTATGATAAAG
*
61488199 GGCTTATGCCCCAGTTATTA-AAAG
1 GGCTTATGCCCCAGTTATGATAAAG
*
61488223 GGCTT-TGCCCTAGTTAT
1 GGCTTATGCCCCAGTTAT
61488240 TAAAAGAGAC
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
23 11 0.17
24 9 0.14
25 44 0.69
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (25 bp):
GGCTTATGCCCCAGTTATGATAAAG
Found at i:61488231 original size:23 final size:24
Alignment explanation
Indices: 61488143--61488245 Score: 145
Period size: 25 Copynumber: 4.2 Consensus size: 24
61488133 GGAGGAAATG
*
61488143 TAAAAAGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
61488167 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
61488192 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
61488217 TAAAAGGGCTT-TGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
61488240 TAAAAG
1 TAAAAG
61488246 AGACAAGGCC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
23 17 0.23
24 10 0.14
25 47 0.64
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:61496039 original size:46 final size:46
Alignment explanation
Indices: 61495938--61496025 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
61495928 TGTAACACGC
* * *
61495938 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
61495984 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
61496026 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:61509988 original size:20 final size:20
Alignment explanation
Indices: 61509922--61509988 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
61509912 ATTTTGATAA
* *
61509922 ACATGGTATGTATGACATGC
1 ACATGATATGTATGATATGC
* *
61509942 GCATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
61509962 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
61509982 ACATGAT
1 ACATGAT
61509989 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:61510100 original size:23 final size:24
Alignment explanation
Indices: 61510037--61510133 Score: 135
Period size: 25 Copynumber: 4.0 Consensus size: 24
61510027 GGAGGAAGTG
61510037 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
61510061 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
61510086 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
61510109 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
61510134 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.29
24 16 0.24
25 31 0.47
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:61510130 original size:48 final size:49
Alignment explanation
Indices: 61510037--61510133 Score: 137
Period size: 48 Copynumber: 2.0 Consensus size: 49
61510027 GGAGGAAGTG
*
61510037 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCAGTTAT
*
61510086 TAAAAGGGCTT-TGCCCCAGTTATTA-AAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAG-GGCTTAGGCC-CCAGTTAT
61510134 ATGATAAAGC
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
47 9 0.20
48 24 0.55
49 11 0.25
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (49 bp):
TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCAGTTAT
Found at i:61519228 original size:39 final size:40
Alignment explanation
Indices: 61519170--61519270 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
61519160 AAATTGAATG
* *
61519170 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
61519209 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
61519249 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
61519271 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:61519263 original size:40 final size:40
Alignment explanation
Indices: 61519170--61519347 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
61519160 AAATTGAATG
* * * * *
61519170 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
61519209 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
61519249 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
61519289 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
61519329 ATATCCGGGTTAAGTCCCG
1 ATATCCGGGCTAAGACCCG
61519348 TGGCCTTGGT
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 32 0.27
40 83 0.71
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:61527325 original size:40 final size:39
Alignment explanation
Indices: 61527157--61527327 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
61527147 AGAAATTGAA
* *
61527157 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
61527197 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
61527237 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
61527277 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
61527317 TGATATCCGGG
1 TGATATCCGGG
61527328 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:61533502 original size:14 final size:14
Alignment explanation
Indices: 61533483--61533510 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
61533473 TTTGGAAGTG
61533483 TATATATATACATA
1 TATATATATACATA
61533497 TATATATATACATA
1 TATATATATACATA
61533511 AGTATGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATACATA
Found at i:61539707 original size:43 final size:43
Alignment explanation
Indices: 61539659--61539807 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
61539649 AGTTTTGAGC
61539659 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * * * ** *
61539702 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATCGGGCTCCAA-GC
1 CTAGCAGGC-GTAATGCCGGTGAAATGA-TATCGGACTTAAAGGT
*
61539743 CTAGCAGGCGTAATGCCAGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* *
61539786 CTAGCAGGCTTATTGCCGGTGA
1 CTAGCAGGCGTAATGCCGGTGA
61539808 TGAAATCAGG
Statistics
Matches: 82, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
40 3 0.04
41 15 0.18
42 26 0.32
43 35 0.43
44 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
Found at i:61542836 original size:18 final size:18
Alignment explanation
Indices: 61542809--61542847 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
61542799 CCCATATCCA
61542809 AGGTCAGAACAGGGTACG
1 AGGTCAGAACAGGGTACG
*
61542827 AGGTCGGAACAGGGTACG
1 AGGTCAGAACAGGGTACG
61542845 AGG
1 AGG
61542848 CATTACCAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.44, T:0.10
Consensus pattern (18 bp):
AGGTCAGAACAGGGTACG
Found at i:61545683 original size:27 final size:27
Alignment explanation
Indices: 61545653--61545806 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
61545643 ATAGTGAATC
61545653 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
61545680 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
61545708 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
61545735 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
61545764 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
61545793 TGCACACTTAGTGC
1 CGCACACTTAGTGC
61545807 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:61545700 original size:29 final size:28
Alignment explanation
Indices: 61545653--61545806 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
61545643 ATAGTGAATC
61545653 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
61545680 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
61545708 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
61545735 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
61545764 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
61545793 TGCACACTTAGTGC
1 CGCACACTTAGTGC
61545807 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:61545724 original size:55 final size:55
Alignment explanation
Indices: 61545653--61545756 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
61545643 ATAGTGAATC
61545653 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
61545708 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
61545757 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:61553537 original size:27 final size:27
Alignment explanation
Indices: 61553507--61553660 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
61553497 ATAGTGAATC
61553507 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
61553534 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
61553562 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
61553589 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
61553618 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
61553647 TGCACACTTAGTGC
1 CGCACACTTAGTGC
61553661 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:61553554 original size:29 final size:28
Alignment explanation
Indices: 61553507--61553660 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
61553497 ATAGTGAATC
61553507 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
61553534 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
61553562 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
61553589 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
61553618 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
61553647 TGCACACTTAGTGC
1 CGCACACTTAGTGC
61553661 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:61553578 original size:55 final size:55
Alignment explanation
Indices: 61553507--61553610 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
61553497 ATAGTGAATC
61553507 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
61553562 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
61553611 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:61554306 original size:2 final size:2
Alignment explanation
Indices: 61554294--61554323 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
61554284 TGATGGTCGA
*
61554294 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61554324 CAACTATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61556128 original size:30 final size:30
Alignment explanation
Indices: 61556093--61556151 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
61556083 CCAAAATCAT
61556093 ATTTTGGAAAAATTACAATTTTGCCCCTAA
1 ATTTTGGAAAAATTACAATTTTGCCCCTAA
** *
61556123 ATTTTGTCAAAATTACATTTTTGCCCCTA
1 ATTTTGGAAAAATTACAATTTTGCCCCTA
61556152 GACTCGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (30 bp):
ATTTTGGAAAAATTACAATTTTGCCCCTAA
Found at i:61563414 original size:42 final size:42
Alignment explanation
Indices: 61563302--61563422 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
61563292 TACCATAACA
* *
61563302 ATGCCATATCCCAGATATGGTATTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
* *
61563344 ATGCCAGTAGCCCA-ACTATGGTCTTACATG-ATATCTCTTATCG
1 ATGCCA-TATCCCAGA-TATGGTCTTACATGTA-ATCTCGTATCG
* *
61563387 ATGTCATATCCCAGATATGGTCCTACATGTAATCTC
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTC
61563423 AGTAACCCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
Found at i:61567440 original size:49 final size:50
Alignment explanation
Indices: 61567367--61567589 Score: 213
Period size: 49 Copynumber: 4.5 Consensus size: 50
61567357 TGAGGTCATG
* * *
61567367 TGTGTAGTACTAAGTGTAGACTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
*** * * *
61567416 TGTGTAGTACTAAGTGCAGGCTACTATACGTACTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATAA-TTAGGTCACA
* * * ** *
61567467 TGTGTA--ACTAAGTGCAGGCTACTAGGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
* * * *
61567515 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATAATT-GGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
*
61567564 TGTGTAGTACTAAGTGCAGACTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
61567590 TGCGTACCAG
Statistics
Matches: 140, Mismatches: 28, Indels: 12
0.78 0.16 0.07
Matches are distributed among these distances:
48 15 0.11
49 85 0.61
50 30 0.21
51 10 0.07
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCACA
Found at i:61567576 original size:99 final size:98
Alignment explanation
Indices: 61567367--61567602 Score: 251
Period size: 99 Copynumber: 2.4 Consensus size: 98
61567357 TGAGGTCATG
* * *
61567367 TGTGTAGTACTAAGTGTAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
* * *
61567432 CAGGCTACTATACGTACTCGATAACTTCGATCA
66 CAAGCTACTACACGTACTCGATAACTTCGAGCA
* * * * ** *
61567465 CGTGT-GTAACTAAGTGCAGGCTACTAGGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGT-ACTAAGTGCAGACTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAG
** * * *
61567529 TGCAAGCTACTACGTGTACTGGATAA-TTGGCCGCA
64 TGCAAGCTACTACACGTACTCGATAACTTCG-AGCA
* *
61567564 TGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATA
61567603 GCTTTGGCTA
Statistics
Matches: 110, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
97 2 0.02
98 34 0.31
99 72 0.65
100 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
CAAGCTACTACACGTACTCGATAACTTCGAGCA
Found at i:61567646 original size:148 final size:147
Alignment explanation
Indices: 61567359--61567648 Score: 370
Period size: 148 Copynumber: 2.0 Consensus size: 147
61567349 ATCTATTGTG
* * *
61567359 AGGTCATGTGTGTAGTACTAAGTGTAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGAAGACTACTACGTGTACCGGATAATTGGCCGCATGTGTAGT
* * * * * *
61567424 ACTAAGTGCAGGCTACTATACGTACTCGATAACTTCGATCACGTGTGTAACTAAGTGCAGGCTAC
66 ACTAAGTGCAGACTACTATACGTACTCGATAACTTCGATCAAGTGTGAAAATAAGTGCAGACAAC
*
61567489 TAGGTGTATCAGATGGTT
131 TA-GAGTATCAGATGGTT
*
61567507 AGGTCACGTGTGTAGTACTAAGTGCAAG-CTACTACGTGTACTGGATAATTGGCCGCATGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTG-AAGACTACTACGTGTACCGGATAATTGGCCGCATGTGTAG
* * * * *
61567571 TACTAAGTGCAGACTACTATGCGTAC-CAGATAGCTTTGGCTACAAGTGTGAAAATATGTGCAGA
65 TACTAAGTGCAGACTACTATACGTACTC-GATAAC-TTCGAT-CAAGTGTGAAAATAAGTGCAGA
61567635 CAACT-GAGTATCAG
127 CAACTAGAGTATCAG
61567649 TTATTATTCC
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
147 1 0.01
148 94 0.77
149 6 0.05
150 21 0.17
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (147 bp):
AGGTCACGTGTGTAGTACTAAGTGAAGACTACTACGTGTACCGGATAATTGGCCGCATGTGTAGT
ACTAAGTGCAGACTACTATACGTACTCGATAACTTCGATCAAGTGTGAAAATAAGTGCAGACAAC
TAGAGTATCAGATGGTT
Found at i:61570861 original size:20 final size:20
Alignment explanation
Indices: 61570833--61570877 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
61570823 GTGTCAATTA
*
61570833 TGCTGGTATACTAGAATGTC
1 TGCTCGTATACTAGAATGTC
*
61570853 TGCTCGTATACTCGAATGTC
1 TGCTCGTATACTAGAATGTC
61570873 TGCTC
1 TGCTC
61570878 ACCAGAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (20 bp):
TGCTCGTATACTAGAATGTC
Found at i:61571334 original size:24 final size:24
Alignment explanation
Indices: 61571302--61571372 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
61571292 CTGTCAAGAG
61571302 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
61571326 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
61571350 AGGATTTAGGAGTTGATTAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
61571373 GAACAGTGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.32, C:0.00, G:0.38, T:0.30
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:61572778 original size:27 final size:27
Alignment explanation
Indices: 61572738--61572848 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
61572728 AGGAAGCGTC
* *
61572738 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
61572765 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
61572792 CTGGTGGCTTTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* **
61572819 CTGGTGACTCTATCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
61572845 CTGG
1 CTGG
61572849 CAGTAATGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 13 0.18
27 61 0.82
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:61572822 original size:54 final size:53
Alignment explanation
Indices: 61572738--61572848 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 53
61572728 AGGAAGCGTC
* * *
61572738 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * *
61572792 CTGGTGGCTTTGCCACAATTATCTGTTCTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
61572845 CTGG
1 CTGG
61572849 CAGTAATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 12 0.24
54 39 0.76
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:61578628 original size:28 final size:27
Alignment explanation
Indices: 61578565--61578634 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
61578555 ATAGTGAGTC
61578565 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61578592 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61578620 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61578635 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61579137 original size:2 final size:2
Alignment explanation
Indices: 61579132--61579161 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
61579122 TCACACATGC
61579132 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61579162 GGCCGAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61582173 original size:24 final size:24
Alignment explanation
Indices: 61582141--61582211 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
61582131 ATGTCAGGAG
61582141 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
61582165 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
* * *
61582189 AGGATTTAAGAGCTGATTAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
61582212 GATTAGTGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.34, C:0.01, G:0.37, T:0.28
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:61583692 original size:54 final size:53
Alignment explanation
Indices: 61583594--61583703 Score: 139
Period size: 54 Copynumber: 2.1 Consensus size: 53
61583584 AGGAAGCGTC
* * *
61583594 CTGGTGGCTATGCCACATTTATCTGGTCTAGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGGTCTAGTGACTCTACCACAT-TATCAGTT
* * * **
61583648 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCAGTT
1 CTGGTGGCTATGCCACAATTATCTGGTCTAGTGACTCTACCACATTATCAGTT
61583701 CTG
1 CTG
61583704 CCAGCAATGC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 10 0.21
54 38 0.79
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGGTCTAGTGACTCTACCACATTATCAGTT
Found at i:61583701 original size:26 final size:26
Alignment explanation
Indices: 61583594--61583703 Score: 112
Period size: 27 Copynumber: 4.1 Consensus size: 26
61583584 AGGAAGCGTC
* * *
61583594 CTGGTGGCTATGCCACATTTATCTGGT
1 CTGGTGACTCTGCCACA-TTATCTGTT
* * *
61583621 CTAGTGGCTCTACCACATATATCTGTT
1 CTGGTGACTCTGCCACAT-TATCTGTT
*
61583648 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGACTCTGCCAC-ATTATCTGTT
* *
61583675 CTGGTGACTCTGTCACATTATCAGTT
1 CTGGTGACTCTGCCACATTATCTGTT
61583701 CTG
1 CTG
61583704 CCAGCAATGC
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 13 0.18
27 57 0.79
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGTT
Found at i:61585963 original size:51 final size:49
Alignment explanation
Indices: 61585841--61586043 Score: 262
Period size: 50 Copynumber: 4.1 Consensus size: 49
61585831 TCTATTGTGA
* * *
61585841 GGTCACGTGTGTAGTACTAAGTGTAGACTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
61585890 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * **
61585940 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
61585990 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
61586040 GGTC
1 GGTC
61586044 GCATGCGTAC
Statistics
Matches: 130, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 44 0.34
50 48 0.37
51 38 0.29
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:61586201 original size:49 final size:49
Alignment explanation
Indices: 61586126--61586224 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
61586116 GAAGAGTTCA
*
61586126 ATGGAAAAATTGATTAAGTAAAAATACATGTGAACATGATTATATGATG
1 ATGGAAAAATCGATTAAGTAAAAATACATGTGAACATGATTATATGATG
*
61586175 ATGGGAAAATCGATTAAGTAAAAATACATGTGAACATGATTATATGATG
1 ATGGAAAAATCGATTAAGTAAAAATACATGTGAACATGATTATATGATG
61586224 A
1 A
61586225 ATAAGTGTAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.29
Consensus pattern (49 bp):
ATGGAAAAATCGATTAAGTAAAAATACATGTGAACATGATTATATGATG
Found at i:61590555 original size:42 final size:42
Alignment explanation
Indices: 61590435--61590598 Score: 168
Period size: 42 Copynumber: 3.9 Consensus size: 42
61590425 TACCATACCA
* * * * *
61590435 ATGCCATATCCGAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATGTCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * *
61590477 ATGCTA-GTAGCCCAGCTATAGTCTTACACGATATCTCTTATCG
1 ATGCCATGT--CCCAGATATGGTCTTACACGAAATCTCATATCG
* *
61590520 ATGCCATGTCCTAGATATGGTCTTACACGAAATCTCATATAG
1 ATGCCATGTCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
61590562 ATTCCATCTCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATGTCCCAGATATGGTCTTACACGAAATCTCA
61590599 GTAACCTTAA
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 65 0.66
43 31 0.31
44 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATGTCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:61591452 original size:12 final size:13
Alignment explanation
Indices: 61591435--61591463 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
61591425 AGATGGACAA
61591435 AATTTGGC-TTTT
1 AATTTGGCTTTTT
61591447 AATTTGGCTTTTT
1 AATTTGGCTTTTT
61591460 AATT
1 AATT
61591464 AATTTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:61593429 original size:16 final size:16
Alignment explanation
Indices: 61593408--61593438 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61593398 GTTTAGTTTA
61593408 AGTTTTAAGTTTTATT
1 AGTTTTAAGTTTTATT
*
61593424 AGTTTTATGTTTTAT
1 AGTTTTAAGTTTTAT
61593439 AAAAACCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.65
Consensus pattern (16 bp):
AGTTTTAAGTTTTATT
Found at i:61593874 original size:8 final size:8
Alignment explanation
Indices: 61593861--61593895 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
61593851 CCTTTAAAAT
61593861 CCCTTAAA
1 CCCTTAAA
61593869 CCCTTAAA
1 CCCTTAAA
61593877 CCCTTAAA
1 CCCTTAAA
*
61593885 CCCTAAAA
1 CCCTTAAA
61593893 CCC
1 CCC
61593896 ACTTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.37, C:0.43, G:0.00, T:0.20
Consensus pattern (8 bp):
CCCTTAAA
Found at i:61593882 original size:16 final size:16
Alignment explanation
Indices: 61593855--61593895 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
61593845 CCAAAACCTT
61593855 TAAAATCCCTTAAACCC
1 TAAAA-CCCTTAAACCC
*
61593872 TTAAACCCTTAAACCC
1 TAAAACCCTTAAACCC
61593888 TAAAACCC
1 TAAAACCC
61593896 ACTTTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (16 bp):
TAAAACCCTTAAACCC
Found at i:61599399 original size:29 final size:28
Alignment explanation
Indices: 61599367--61599423 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
61599357 TTCAGGCCAG
*
61599367 ATGGACCATATGAATGTGATTTGGGCCTA
1 ATGGACCATATGAATGAGA-TTGGGCCTA
*
61599396 ATGGGCCATATGAATGAGATTGGGCCTA
1 ATGGACCATATGAATGAGATTGGGCCTA
61599424 GTGGGCTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (28 bp):
ATGGACCATATGAATGAGATTGGGCCTA
Found at i:61599428 original size:28 final size:29
Alignment explanation
Indices: 61599367--61599435 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 29
61599357 TTCAGGCCAG
* *
61599367 ATGGACCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
61599396 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
* *
61599424 GTGGGCTATATG
1 ATGGGCCATATG
61599436 CATGTATGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 19 0.53
29 17 0.47
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:61604366 original size:43 final size:42
Alignment explanation
Indices: 61604199--61604368 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 42
61604189 ACATATCGTA
* * *
61604199 CAATGCCAA-TGTCCCAGACGTGGTCTTACATGTAATCATATCT
1 CAATGCCAACT-TCCCAGACATGGTCTTACATG-AATCACATAT
* * * * *
61604242 CGATGCC-ACTTTCCCAAATAGGGTCTTACATGAATCAAATA-
1 CAATGCCAAC-TTCCCAGACATGGTCTTACATGAATCACATAT
* * * *
61604283 CGATGTCGATTTCCCAGACATGGTCTTACACAT-AATCACATAT
1 CAATGCCAACTTCCCAGACATGGTCTT--ACATGAATCACATAT
*
61604326 CAATGCCAACATCCCAGACATGGTCTTACATGAATACACATAT
1 CAATGCCAACTTCCCAGACATGGTCTTACATGAAT-CACATAT
61604369 AAAAAATCCT
Statistics
Matches: 101, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
41 24 0.24
42 20 0.20
43 56 0.55
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (42 bp):
CAATGCCAACTTCCCAGACATGGTCTTACATGAATCACATAT
Found at i:61606821 original size:48 final size:48
Alignment explanation
Indices: 61606759--61607327 Score: 1003
Period size: 48 Copynumber: 11.9 Consensus size: 48
61606749 TATATATGTG
*
61606759 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
61606807 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
61606855 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
61606903 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
61606951 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
61606999 TGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
61607047 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
61607095 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
61607143 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
61607191 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
61607239 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
61607287 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
61607328 GTGTGTATAT
Statistics
Matches: 499, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 499 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:61607522 original size:37 final size:37
Alignment explanation
Indices: 61607468--61607607 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
61607458 GGAAATATAT
*
61607468 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61607505 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
61607542 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
61607579 TCCGGGTAAGACCCGATAACTACGCGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
61607608 GGACTATTCG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:61608654 original size:16 final size:16
Alignment explanation
Indices: 61608614--61608654 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
61608604 CAAATTAAAC
*
61608614 TCATTCAAAAATAATT
1 TCATTCAATAATAATT
61608630 TCATTCAATAATAATT
1 TCATTCAATAATAATT
61608646 TCATTCAAT
1 TCATTCAAT
61608655 TTAGTCCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (16 bp):
TCATTCAATAATAATT
Found at i:61609450 original size:14 final size:15
Alignment explanation
Indices: 61609433--61609461 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
61609423 ACACTGAAAT
61609433 TTTACACA-TATAAA
1 TTTACACATTATAAA
61609447 TTTACACATTATAAA
1 TTTACACATTATAAA
61609462 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (15 bp):
TTTACACATTATAAA
Found at i:61617819 original size:37 final size:37
Alignment explanation
Indices: 61617769--61617842 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
61617759 TTCGCGACAG
61617769 GTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAA
1 GTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAA
61617806 GTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAA
1 GTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAA
61617843 CTATTATCAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (37 bp):
GTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAA
Found at i:61625139 original size:40 final size:40
Alignment explanation
Indices: 61625094--61625223 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
61625084 CGGAATACAA
61625094 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * * *
61625134 CCGGATAGAACGACTCGCACGAATGCCTTTGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
61625174 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
61625214 CCGGATATAA
1 CCGGATATAA
61625224 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:61626990 original size:38 final size:38
Alignment explanation
Indices: 61626905--61627038 Score: 162
Period size: 38 Copynumber: 3.5 Consensus size: 38
61626895 GGCTGTCACA
* *
61626905 TTCGTGCTGGTATTATATCCGGGCTTAAAGACCCGCAGGC
1 TTCGTGCTGGTATTATATCCAGG-TTAAA-TCCCGCAGGC
* **
61626945 TTTGTGCTGGTAAAATATCCAGGTTAAATCCCGCAGGC
1 TTCGTGCTGGTATTATATCCAGGTTAAATCCCGCAGGC
*
61626983 TTCGTGCTGGTATTATAT-CAGGGATAAATCCCGCAGGC
1 TTCGTGCTGGTATTATATCCA-GGTTAAATCCCGCAGGC
* *
61627021 CTAGTGCTGGTATTATAT
1 TTCGTGCTGGTATTATAT
61627039 TTGGGCCTTC
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
37 2 0.02
38 56 0.68
39 5 0.06
40 19 0.23
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TTCGTGCTGGTATTATATCCAGGTTAAATCCCGCAGGC
Found at i:61627113 original size:43 final size:43
Alignment explanation
Indices: 61627036--61627117 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
61627026 GCTGGTATTA
* * **
61627036 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
*
61627079 TATTCGGGCCTTCGTGCCTAGTAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
61627118 AATGATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.12, C:0.23, G:0.34, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:61627484 original size:45 final size:46
Alignment explanation
Indices: 61627425--61627541 Score: 127
Period size: 45 Copynumber: 2.6 Consensus size: 46
61627415 TGGAACTTGT
* * * *
61627425 TGACATGATTATTCGGGCCTTTGATCTTAGCAAACTATAATGCCGG
1 TGACATGACTATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGG
** *
61627471 TGACAT-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGG
1 TGACATGACTATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGG
61627516 TGA-ACTGA-TA-TCGGGCC-TCGAGCCTA
1 TGACA-TGACTATTCGGGCCTTCGAGCCTA
61627542 ACAGGCGAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
43 9 0.15
44 8 0.13
45 38 0.61
46 7 0.11
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (46 bp):
TGACATGACTATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGG
Found at i:61637222 original size:45 final size:44
Alignment explanation
Indices: 61637075--61637233 Score: 146
Period size: 45 Copynumber: 3.5 Consensus size: 44
61637065 GCGTACTATA
*
61637075 ACTCAACTCAACGAGCTTAGG-CGTTTGCATCCATAAGTGAACTCG
1 ACTCAACTCAACGAG-TTCGGACGTTT-CATCCATAAGTGAACTCG
* * * * *
61637120 AACTCAACTCAACGAGTTTGGATGCCTAGTTACAT--TTCA-CGAACTCGG
1 -ACTCAACTCAACGAGTTCGGA---C--GTTTCATCCATAAGTGAACTC-G
61637168 ACTCAACTCAACGAGTTCGGACGTTTCATCCATAAGTGAACTCAG
1 ACTCAACTCAACGAGTTCGGACGTTTCATCCATAAGTGAACTC-G
61637213 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGTTCGGA
61637234 TGCCCAAATA
Statistics
Matches: 92, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
42 6 0.07
44 3 0.03
45 32 0.35
46 15 0.16
47 26 0.28
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (44 bp):
ACTCAACTCAACGAGTTCGGACGTTTCATCCATAAGTGAACTCG
Found at i:61651460 original size:93 final size:93
Alignment explanation
Indices: 61651332--61651503 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
61651322 GCCCATAAGT
* * *
61651332 GAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAATTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
61651397 GGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
61651425 GAACTCTGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
61651490 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
61651504 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:61651499 original size:46 final size:46
Alignment explanation
Indices: 61651324--61651499 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
61651314 TGTAACCCGC
* * * *
61651324 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
61651370 CCATAATTGAACTCGGACTCAACTCAAGGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
61651416 ACATCTCTCGAACTCTGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
61651463 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
61651500 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 65 0.62
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Done.