Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 209 of 770
Found at i:62574088 original size:92 final size:93
Alignment explanation
Indices: 62573921--62574090 Score: 261
Period size: 92 Copynumber: 1.8 Consensus size: 93
62573911 GCCCATAAGT
* * * *
62573921 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62573986 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
62574014 GAACTCGGA-TCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
62574078 CGAGTTCGGATGC
66 CGAGCTCGGATGC
62574091 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
92 60 0.87
93 9 0.13
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:62574106 original size:46 final size:46
Alignment explanation
Indices: 62573964--62574106 Score: 104
Period size: 46 Copynumber: 3.1 Consensus size: 46
62573954 CGTATCCATA
*
62573964 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CT
* * * * *
62574013 --CGAACTCGGA-TCAACTCAACGAGTTCAGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCT-CAACCATCCT
62574056 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
62574102 AGTGA
1 AGTGA
62574107 CATGTCACTT
Statistics
Matches: 72, Mismatches: 11, Indels: 25
0.67 0.10 0.23
Matches are distributed among these distances:
44 8 0.11
45 11 0.15
46 39 0.54
47 10 0.14
48 3 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:62576055 original size:30 final size:31
Alignment explanation
Indices: 62576020--62576099 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
62576010 CAGGAAAACC
* *
62576020 GAATAAAGAAATCCAAGATAGAGA-AACCCG
1 GAATAAAGAAATCCAAGATAAAGAGAACCAG
*
62576050 GAATAAAGAAATCC-AGAATAAAGAGATCCAG
1 GAATAAAGAAATCCAAG-ATAAAGAGAACCAG
*
62576081 G-ATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
62576100 CGATACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 2 0.05
30 34 0.79
31 7 0.16
ACGTcount: A:0.55, C:0.15, G:0.19, T:0.11
Consensus pattern (31 bp):
GAATAAAGAAATCCAAGATAAAGAGAACCAG
Found at i:62576099 original size:15 final size:15
Alignment explanation
Indices: 62576022--62576099 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
62576012 GGAAAACCGA
62576022 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
62576037 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
62576051 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
62576066 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
62576082 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
62576097 ATA
1 ATA
62576100 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:62579129 original size:93 final size:93
Alignment explanation
Indices: 62579014--62579185 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
62579004 TGCCCATAAG
* *
62579014 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
62579079 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* **
62579107 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
62579172 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
62579186 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:62579182 original size:46 final size:46
Alignment explanation
Indices: 62579007--62579182 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
62578997 TGTAACCTGC
* * *
62579007 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
*
62579053 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTACAT
* *
62579103 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
*
62579146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
62579183 TGCTCAACCA
Statistics
Matches: 114, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 66 0.58
47 29 0.25
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
Found at i:62583222 original size:42 final size:42
Alignment explanation
Indices: 62583159--62583244 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
62583149 TGATTTTCCC
*
62583159 TTTTTGCGGCGTTTCCACTAAAAACGCCATTATAGTTTAATT
1 TTTTTGCGGCGTTTCCACTAAAAACGCCACTATAGTTTAATT
* * * * *
62583201 TTTTTGTGGCGTTTTGC-CTAAAAATGCTACTATTGTTTAATT
1 TTTTTGCGGCG-TTTCCACTAAAAACGCCACTATAGTTTAATT
62583243 TT
1 TT
62583245 AATTTTTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 33 0.89
43 4 0.11
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.47
Consensus pattern (42 bp):
TTTTTGCGGCGTTTCCACTAAAAACGCCACTATAGTTTAATT
Found at i:62583376 original size:7 final size:7
Alignment explanation
Indices: 62583366--62583390 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
62583356 ATATGAACTA
62583366 AAATATT
1 AAATATT
62583373 AAATATT
1 AAATATT
62583380 AAATATT
1 AAATATT
62583387 AAAT
1 AAAT
62583391 TTTTAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:62583416 original size:22 final size:22
Alignment explanation
Indices: 62583385--62583447 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
62583375 ATATTAAATA
62583385 TTAAATTTTTAAGTTTTTTATTT
1 TTAAATTTTTAA-TTTTTTATTT
* * *
62583408 TTAAGTTTTTTATTTTTTTTTT
1 TTAAATTTTTAATTTTTTATTT
*
62583430 TTAAATTTTAAATTTTTT
1 TTAAATTTTTAATTTTTT
62583448 TTTGAAGATT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 24 0.71
23 10 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (22 bp):
TTAAATTTTTAATTTTTTATTT
Found at i:62583431 original size:15 final size:15
Alignment explanation
Indices: 62583389--62583424 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
62583379 TAAATATTAA
62583389 ATTTTTAAGTTTTTT
1 ATTTTTAAGTTTTTT
62583404 ATTTTTAAGTTTTTT
1 ATTTTTAAGTTTTTT
62583419 ATTTTT
1 ATTTTT
62583425 TTTTTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (15 bp):
ATTTTTAAGTTTTTT
Found at i:62583458 original size:21 final size:22
Alignment explanation
Indices: 62583414--62583469 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 22
62583404 ATTTTTAAGT
* *
62583414 TTTTTAT-TTTTTTTTTTTAAA
1 TTTTTATAATTTTTTTTTGAAA
62583435 -TTTTA-AATTTTTTTTTGAAGA
1 TTTTTATAATTTTTTTTTGAA-A
62583456 TTTTTATAATTTTT
1 TTTTTATAATTTTT
62583470 AAATTAAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 16 0.55
21 1 0.03
22 5 0.17
23 7 0.24
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (22 bp):
TTTTTATAATTTTTTTTTGAAA
Found at i:62583467 original size:9 final size:8
Alignment explanation
Indices: 62583385--62583474 Score: 50
Period size: 7 Copynumber: 11.9 Consensus size: 8
62583375 ATATTAAATA
62583385 TTAAATTT
1 TTAAATTT
*
62583393 TTAAGTTT
1 TTAAATTT
*
62583401 TT-TATTT
1 TTAAATTT
*
62583408 TTAAGTTT
1 TTAAATTT
*
62583416 TT-TATTT
1 TTAAATTT
**
62583423 TT-TTTTT
1 TTAAATTT
62583430 TTAAA-TT
1 TTAAATTT
62583437 TTAAATTT
1 TTAAATTT
62583445 TT---TTT
1 TTAAATTT
*
62583450 TGAAGATTT
1 TTAA-ATTT
62583459 TTATAATTT
1 TTA-AATTT
62583468 TTAAATT
1 TTAAATT
62583475 AAGATATAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 4 0.06
7 23 0.37
8 22 0.35
9 12 0.19
10 1 0.02
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (8 bp):
TTAAATTT
Found at i:62584240 original size:14 final size:15
Alignment explanation
Indices: 62584213--62584245 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
62584203 CTTAAGCCCT
*
62584213 AACCCCTAAGCCTTA
1 AACCCCTAACCCTTA
62584228 AACCCC-AACCCTTA
1 AACCCCTAACCCTTA
62584242 AACC
1 AACC
62584246 ATAAATCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.36, C:0.45, G:0.03, T:0.15
Consensus pattern (15 bp):
AACCCCTAACCCTTA
Found at i:62584272 original size:15 final size:15
Alignment explanation
Indices: 62584234--62584281 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
62584224 CTTAAACCCC
* *
62584234 AACCCTTAAACCATA
1 AACCCATAATCCATA
* *
62584249 AA-TCATAATCCCTA
1 AACCCATAATCCATA
62584263 AACCCATAATCCATA
1 AACCCATAATCCATA
62584278 AACC
1 AACC
62584282 TTAAAACAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:62584286 original size:22 final size:21
Alignment explanation
Indices: 62584237--62584336 Score: 58
Period size: 22 Copynumber: 4.7 Consensus size: 21
62584227 AAACCCCAAC
*
62584237 CCTTAAACCATAAATCATAAT
1 CCTTAAACCATAAATCATAAA
*
62584258 CCCTAAACCCAT-AATCCATAAA
1 CCTTAAA-CCATAAAT-CATAAA
* * * *
62584280 CCTTAAAACAGTGACTCATACA
1 CCTTAAACCA-TAAATCATAAA
* * * * *
62584302 CTTTAAAGCTTAAACCCTAAA
1 CCTTAAACCATAAATCATAAA
*
62584323 CCCTAAACCATAAA
1 CCTTAAACCATAAA
62584337 CTATAATGAT
Statistics
Matches: 57, Mismatches: 18, Indels: 8
0.69 0.22 0.10
Matches are distributed among these distances:
21 27 0.47
22 28 0.49
23 2 0.04
ACGTcount: A:0.45, C:0.29, G:0.03, T:0.23
Consensus pattern (21 bp):
CCTTAAACCATAAATCATAAA
Found at i:62584448 original size:7 final size:7
Alignment explanation
Indices: 62584436--62584556 Score: 50
Period size: 7 Copynumber: 17.0 Consensus size: 7
62584426 ACTAATTAAT
62584436 CTAAACC
1 CTAAACC
62584443 CTAAACTC
1 CTAAAC-C
*
62584451 CTAATCC
1 CTAAACC
* *
62584458 TTAAATC
1 CTAAACC
*
62584465 CTAAACT
1 CTAAACC
* *
62584472 ATAAATC
1 CTAAACC
*
62584479 CTAAAAC
1 CTAAACC
*
62584486 ATAAACC
1 CTAAACC
*
62584493 CTGAACC
1 CTAAACC
*
62584500 CTGAACC
1 CTAAACC
*
62584507 ACT-AACA
1 -CTAAACC
*
62584514 CTTAACC
1 CTAAACC
62584521 C-ATAACAC
1 CTA-AAC-C
62584529 CTAAACC
1 CTAAACC
*
62584536 TTAAACC
1 CTAAACC
*
62584543 C-CAACC
1 CTAAACC
62584549 CTTAAACC
1 C-TAAACC
62584557 ACCCTTAAAT
Statistics
Matches: 83, Mismatches: 23, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
6 7 0.08
7 58 0.70
8 17 0.20
9 1 0.01
ACGTcount: A:0.42, C:0.36, G:0.02, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:62584587 original size:15 final size:14
Alignment explanation
Indices: 62584562--62584594 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
62584552 AAACCACCCT
62584562 TAAATCATAATCCA
1 TAAATCATAATCCA
62584576 TAAATCCATAATCCA
1 TAAAT-CATAATCCA
62584591 TAAA
1 TAAA
62584595 CCTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAATCATAATCCA
Found at i:62585148 original size:116 final size:115
Alignment explanation
Indices: 62585004--62585265 Score: 325
Period size: 116 Copynumber: 2.3 Consensus size: 115
62584994 ACTTGATCTT
* * * * * *
62585004 TAGCGGCGTTTTTAAAAAGCGCCGCTAAAGCCACTAAATGCTCAATACAAAATGACGGGGTTTTA
1 TAGCGGCTTTTTTAAAAAGTGCCGCTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTTA
*
62585069 CAAAATTCTT-T-T-GCGACGTTTTTCAAAAA-ATGCCGCTAAAGGTGTACATA
66 CAAAATTCTTCTATAGCGTC--TTTTCAAAAACAT--CGCTAAAGGTGTACATA
*
62585119 TAGCGGCATTTTTTAAAAAGTGCCACTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTT
1 TAGCGGC-TTTTTTAAAAAGTGCCGCTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTT
* *
62585184 GCAAAATTCTTCTATAGCGTCTTTTGAAAAACATCGCTAAAGGTGTACATA
65 ACAAAATTCTTCTATAGCGTCTTTTCAAAAACATCGCTAAAGGTGTACATA
* * *
62585235 TAGTGGCGTTTTTCAAAAAATGCCGCTAAAG
1 TAGCGGC-TTTTTTAAAAAGTGCCGCTAAAG
62585266 GTGTACTTAT
Statistics
Matches: 127, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
115 7 0.06
116 103 0.81
117 10 0.08
118 3 0.02
119 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (115 bp):
TAGCGGCTTTTTTAAAAAGTGCCGCTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTTA
CAAAATTCTTCTATAGCGTCTTTTCAAAAACATCGCTAAAGGTGTACATA
Found at i:62585254 original size:40 final size:39
Alignment explanation
Indices: 62585205--62585292 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 39
62585195 CTATAGCGTC
* * * *
62585205 TTTTGAAAAACATCGCTAAAGGTGTACATATAGTGGCGT
1 TTTTAAAAAACACCGCTAAAGGTGTACATATAGTAGAGT
** *
62585244 TTTTCAAAAAATGCCGCTAAAGGTGTACTTATAGTAGAGT
1 TTTT-AAAAAACACCGCTAAAGGTGTACATATAGTAGAGT
62585284 TTTTAAAAA
1 TTTTAAAAA
62585293 GCGCTGCTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 9 0.22
40 32 0.78
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (39 bp):
TTTTAAAAAACACCGCTAAAGGTGTACATATAGTAGAGT
Found at i:62585303 original size:39 final size:40
Alignment explanation
Indices: 62585218--62585304 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
62585208 TGAAAAACAT
* * *
62585218 CGCTAAAGGTGTACATATAGTGGCGTTTTTCAAAAAATGC
1 CGCTAAAGGTGTACATATAGTAGAGTTTTTCAAAAAACGC
* *
62585258 CGCTAAAGGTGTACTTATAGTAGAGTTTTT-AAAAAGCGC
1 CGCTAAAGGTGTACATATAGTAGAGTTTTTCAAAAAACGC
*
62585297 TGCTAAAG
1 CGCTAAAG
62585305 CCACTAAAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
39 14 0.34
40 27 0.66
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (40 bp):
CGCTAAAGGTGTACATATAGTAGAGTTTTTCAAAAAACGC
Found at i:62585398 original size:155 final size:154
Alignment explanation
Indices: 62585075--62585402 Score: 378
Period size: 155 Copynumber: 2.1 Consensus size: 154
62585065 TTTACAAAAT
* * * * *
62585075 TCTTTTGCGACGTTTTTCAAAAAATGCCGCTAAAGGTGTACATATAGCGGCATTTTTTAAAAAGT
1 TCTTTAGCGGCGTTTTTCAAAAAATGCCGCTAAAGGTGTACATATAGCAGCAGTTTTTAAAAAGC
* *
62585140 GCCACTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTCTTCTATAGCGTC
66 GCCACTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTATTCTATAGCGGC
* *
62585205 TTTTGAAAAACATCGCTAAAGGTG
131 TTTTGAAAAACAGCGCTAAACGTG
* * * *
62585229 TACATATAGTGGCGTTTTTCAAAAAATGCCGCTAAAGGTGTACTTATAGTAG-AGTTTTTAAAAA
1 T-C-TTTAGCGGCGTTTTTCAAAAAATGCCGCTAAAGGTGTACATATAGCAGCAGTTTTTAAAAA
** * *
62585293 GCGCTGCTAAAGCCACTAAAAGCTCAATACAAAATGACCGAGTTTTGCAAAATTATT-T-T-GCG
64 GCGCCACTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTATTCTATAGCG
* *
62585355 GCATTTTTAAAAA-AGCGCCACTAATACTTG
129 GC-TTTTGAAAAACAGCG---CTAA-ACGTG
62585385 ATCTTTAGCGGCGTTTTT
1 -TCTTTAGCGGCGTTTTT
62585403 TGTAAAGCGC
Statistics
Matches: 145, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
152 7 0.05
153 10 0.07
154 2 0.01
155 80 0.55
156 45 0.31
157 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (154 bp):
TCTTTAGCGGCGTTTTTCAAAAAATGCCGCTAAAGGTGTACATATAGCAGCAGTTTTTAAAAAGC
GCCACTAAAGCCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTATTCTATAGCGGC
TTTTGAAAAACAGCGCTAAACGTG
Found at i:62585410 original size:40 final size:39
Alignment explanation
Indices: 62585345--62585482 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 39
62585335 TTTTGCAAAA
* *
62585345 TTAT-TTT-GCGGCATTTTTAAAAAAGCGCCACTAATAC
1 TTATCTTTAGCGGCGTTTTTTAAAAAGCGCCACTAATAC
** **
62585382 TTGATCTTTAGCGGCGTTTTTTGTAAAGCGCTGCTAATAC
1 TT-ATCTTTAGCGGCGTTTTTTAAAAAGCGCCACTAATAC
* *
62585422 TCTATCTTTAGCGGCGTTTTTTAAAAAGCACCACTAATGC
1 T-TATCTTTAGCGGCGTTTTTTAAAAAGCGCCACTAATAC
*
62585462 TCATTCTTTAGCGGCGTTTTT
1 TTA-TCTTTAGCGGCGTTTTT
62585483 CATTCAAATG
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
37 2 0.02
38 2 0.02
39 4 0.05
40 74 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (39 bp):
TTATCTTTAGCGGCGTTTTTTAAAAAGCGCCACTAATAC
Found at i:62585418 original size:155 final size:156
Alignment explanation
Indices: 62585085--62585372 Score: 379
Period size: 155 Copynumber: 1.9 Consensus size: 156
62585075 TCTTTTGCGA
* * * *
62585085 CGTTTTTCAAAAAATGCCGCTAAAGGTGTACATATAGCGGCATTTTTTAAAAAGTGCCACTAAAG
1 CGTTTTTCAAAAAACGCCGCTAAAGGTGTACATATAGCAGCAGTTTTTAAAAAGCGCCACTAAAG
* *
62585150 CCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTCTTCTATAGCGTCTTTTGAAAAA
66 CCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTATTCTATAGCGGCTTTTGAAAAA
* * *
62585215 CATCGCTAAAGGTGTACATATAGTGG
131 CAGCGCTAAACGTGTACATATAGCGG
* * * **
62585241 CGTTTTTCAAAAAATGCCGCTAAAGGTGTACTTATAGTAG-AGTTTTTAAAAAGCGCTGCTAAAG
1 CGTTTTTCAAAAAACGCCGCTAAAGGTGTACATATAGCAGCAGTTTTTAAAAAGCGCCACTAAAG
* * *
62585305 CCACTAAAAGCTCAATACAAAATGACCGAGTTTTGCAAAATTATT-T-T-GCGGCATTTTTAAAA
66 CCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTATTCTATAGCGGC-TTTTGAAAA
62585367 A-AGCGC
130 ACAGCGC
62585373 CACTAATACT
Statistics
Matches: 118, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
152 8 0.07
153 10 0.08
154 1 0.01
155 62 0.53
156 37 0.31
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (156 bp):
CGTTTTTCAAAAAACGCCGCTAAAGGTGTACATATAGCAGCAGTTTTTAAAAAGCGCCACTAAAG
CCACTAAAAGCTCAATACAAAACGACAGAGTTTTGCAAAATTATTCTATAGCGGCTTTTGAAAAA
CAGCGCTAAACGTGTACATATAGCGG
Found at i:62588668 original size:29 final size:29
Alignment explanation
Indices: 62588634--62588794 Score: 186
Period size: 29 Copynumber: 5.6 Consensus size: 29
62588624 TAATCGATCA
*
62588634 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
62588663 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
62588692 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
62588721 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
62588750 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
62588779 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62588795 ATCTTGTCAC
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 110 0.93
31 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:62590760 original size:30 final size:30
Alignment explanation
Indices: 62590716--62590810 Score: 136
Period size: 30 Copynumber: 3.2 Consensus size: 30
62590706 ATTACAGGAG
* * *
62590716 TCACACACCCGTGTGGCTAGGCCGTGTGCC
1 TCACACGCCCGTGTGGCCAGGCCATGTGCC
*
62590746 TCACACGCCTGTGTGGCCAGGCCATGTGCC
1 TCACACGCCCGTGTGGCCAGGCCATGTGCC
* *
62590776 TCACATGCCCGTGTGGCCAGGCCATGTGAC
1 TCACACGCCCGTGTGGCCAGGCCATGTGCC
62590806 TCACA
1 TCACA
62590811 TGGCTGAGAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.16, C:0.36, G:0.28, T:0.20
Consensus pattern (30 bp):
TCACACGCCCGTGTGGCCAGGCCATGTGCC
Found at i:62592422 original size:42 final size:45
Alignment explanation
Indices: 62592363--62592716 Score: 232
Period size: 47 Copynumber: 7.7 Consensus size: 45
62592353 CATGGTTCAA
62592363 CTATGGTCTTACAC-AT-AT-TCACATAAT-GATGCCATAGCCCAG
1 CTATGGTCTTACACGATCATATCACAT-ATCGATGCCATAGCCCAG
62592405 CTATGGTCTTACAC-AT-AT-TCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACGATCATATCACATATCGATGCCATAGCCCAG
* *
62592447 CTATGGTCTTACACGTAATCACATATCACATATCGATGTCATAGCCTAG
1 CTATGGTCTTACACG--AT--CATATCACATATCGATGCCATAGCCCAG
* * *
62592496 CTATGGTCTTACACGGATCACATATCATATATTGATGCCA-AGCCCGG
1 CTATGGTCTTACAC-GAT--CATATCACATATCGATGCCATAGCCCAG
* * * *
62592543 CTATGGTCTTACACGAATCACATATCTCA-CT-GATGCCATATCCTAG
1 CTATGGTCTTACACG-AT--CATATCACATATCGATGCCATAGCCCAG
* * * * *
62592589 ATATGGTCTTATACAGTAGCACATATCAC--ACCGATGCCATATCCCAG
1 CTATGGTCTTACAC-G-A--TCATATCACATATCGATGCCATAGCCCAG
* * *
62592636 CTATGGTCTTAAACGGAAGCACATAATCACATCTCTCCGATGCCATAGCCCAG
1 CTATGGTCTTACAC-G-A--TCAT-ATCACA--TAT-CGATGCCATAGCCCAG
* *
62592689 CTATGGTCTTATACGA--AAATCACATATC
1 CTATGGTCTTACACGATCATATCACATATC
62592717 ACATGTTGCC
Statistics
Matches: 260, Mismatches: 31, Indels: 41
0.78 0.09 0.12
Matches are distributed among these distances:
41 2 0.01
42 53 0.20
43 1 0.00
44 2 0.01
45 9 0.03
46 24 0.09
47 74 0.28
48 28 0.11
49 36 0.14
50 1 0.00
51 1 0.00
52 1 0.00
53 28 0.11
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (45 bp):
CTATGGTCTTACACGATCATATCACATATCGATGCCATAGCCCAG
Found at i:62592563 original size:47 final size:48
Alignment explanation
Indices: 62592416--62592720 Score: 305
Period size: 47 Copynumber: 6.2 Consensus size: 48
62592406 TATGGTCTTA
62592416 CACATATTCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* * *
62592466 CACATATCACATATCGATGTCATAGCCTAGCTATGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * *
62592514 CACATATCATATATTGATGCCA-AGCCCGGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * * * *
62592561 CACATATCTCA-CT-GATGCCATATCCTAGATATGGTCTTATACAGTAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * * *
62592608 CACATATCAC--ACCGATGCCATATCCCAGCTATGGTCTTAAACGGAAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* *
62592655 CACATAATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATACGAAAAT
1 CACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTACACG--AAT
62592709 CACATATCACAT
1 CACATATCACAT
62592721 GTTGCCATGG
Statistics
Matches: 212, Mismatches: 32, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
45 7 0.03
46 17 0.08
47 76 0.36
48 26 0.12
49 37 0.17
50 6 0.03
51 1 0.00
52 1 0.00
53 34 0.16
54 7 0.03
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:62592639 original size:93 final size:95
Alignment explanation
Indices: 62592431--62592699 Score: 276
Period size: 93 Copynumber: 2.8 Consensus size: 95
62592421 ATTCACATAT
*
62592431 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCGATGTCATAGCCTAG
1 CGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATCACATATCGATGCCATAGCCTAG
* * * *
62592496 CTATGGTCTTACACGGATCACATATCATATAT
65 ATATGGTCTTACACGGAGCACATATCA-ACAC
* * * * *
62592528 TGATGCCA-AGCCCGGCTATGGTCTTACACGAATCACATATCTCA-CT-GATGCCATATCCTAGA
1 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATATCGATGCCATAGCCTAGA
* *
62592590 TATGGTCTTATACAGTAGCACATATC-ACAC
66 TATGGTCTTACAC-GGAGCACATATCAACAC
* * * *
62592620 CGATGCCATATCCCAGCTATGGTCTTAAACGGAAGCACATAATCACATCTCTCCGATGCCATAGC
1 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACAT-ATCACA--TAT-CGATGCCATAGC
* *
62592685 CCAGCTATGGTCTTA
61 CTAGATATGGTCTTA
62592700 TACGAAAATC
Statistics
Matches: 142, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
92 9 0.06
93 43 0.30
94 19 0.13
95 18 0.13
96 21 0.15
97 7 0.05
98 2 0.01
100 23 0.16
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (95 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATATCGATGCCATAGCCTAGA
TATGGTCTTACACGGAGCACATATCAACAC
Found at i:62592718 original size:53 final size:53
Alignment explanation
Indices: 62592619--62592720 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 53
62592609 ACATATCACA
* *
62592619 CCGATGCCATATCCCAGCTATGGTCTTAAACGGAAGCACATAATCACATCTCT
1 CCGATGCCATAGCCCAGCTATGGTCTTAAACGAAAGCACATAATCACATCTCT
* *
62592672 CCGATGCCATAGCCCAGCTATGGTCTTATACGAAAATCACAT-ATCACAT
1 CCGATGCCATAGCCCAGCTATGGTCTTAAACG-AAAGCACATAATCACAT
62592721 GTTGCCATGG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 37 0.84
54 7 0.16
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (53 bp):
CCGATGCCATAGCCCAGCTATGGTCTTAAACGAAAGCACATAATCACATCTCT
Found at i:62595952 original size:20 final size:18
Alignment explanation
Indices: 62595927--62595971 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
62595917 AACAATTAAA
*
62595927 TCAATTTAATATTACACATT
1 TCAATTTAACATTA-A-ATT
*
62595947 TCAATTTCACATTAAATT
1 TCAATTTAACATTAAATT
62595965 TCAATTT
1 TCAATTT
62595972 CCACACTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (18 bp):
TCAATTTAACATTAAATT
Found at i:62595984 original size:19 final size:18
Alignment explanation
Indices: 62595944--62595989 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
62595934 AATATTACAC
*
62595944 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
62595962 ATTTCAATTTCCACACTAT
1 ATTTCAATTT-CACACTAA
*
62595981 ATTTTAATT
1 ATTTCAATT
62595990 ATTCTTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:62598207 original size:31 final size:32
Alignment explanation
Indices: 62598157--62598241 Score: 122
Period size: 31 Copynumber: 2.8 Consensus size: 32
62598147 TCAATCTCAA
*
62598157 CATAT-ACTAGGCCGAAGCCTTTAT-ATTATT
1 CATATCACTGGGCCGAAGCCTTTATCATTATT
* *
62598187 CATATCACTGGGCTGTAGCCTTT-TCATTATT
1 CATATCACTGGGCCGAAGCCTTTATCATTATT
62598218 CATATCACTGGGCCGAAGCCTTTA
1 CATATCACTGGGCCGAAGCCTTTA
62598242 CTGCAACAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 6 0.13
31 41 0.87
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (32 bp):
CATATCACTGGGCCGAAGCCTTTATCATTATT
Found at i:62600419 original size:79 final size:80
Alignment explanation
Indices: 62600264--62600486 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 80
62600254 TCGAATGATG
* * * * **
62600264 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGTACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
62600327 TCGTGCGAGTTACTAAA
64 TCGTGCGAGTTACTAAA
*
62600344 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
62600406 TGGTGCGAGTTACTAAA
64 TCGTGCGAGTTACTAAA
** *
62600423 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
62600487 TGAACGAGTA
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 70 0.56
80 47 0.37
81 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:62600487 original size:119 final size:120
Alignment explanation
Indices: 62600264--62600488 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
62600254 TCGAATGATG
* * *
62600264 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGTACTAAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
62600329 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
* * **
62600384 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
62600446 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TCGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
62600489 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.77
120 19 0.21
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:62600495 original size:40 final size:40
Alignment explanation
Indices: 62600264--62600488 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
62600254 TCGAATGATG
* * *
62600264 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
62600304 TCCGTACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62600344 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62600384 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62600423 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62600464 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62600489 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62600519 original size:79 final size:78
Alignment explanation
Indices: 62600317--62600521 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 78
62600307 GTACTAAGAT
* ** ** *
62600317 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAA-CTCCGAAGGCATTTGTGCGAGTTACTA
*
62600382 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
** *
62600396 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAACT-CCGAAGGCATTTGTGCGAGTTACTA
*
62600460 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
* *
62600476 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAACTCCGAAGG
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGTT-AACTCCGAAGG
62600522 TACGTGATTC
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 80 0.73
80 27 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAACTCCGAAGGCATTTGTGCGAGTTACTAA
TACCGGGCTAAGC
Found at i:62604463 original size:26 final size:26
Alignment explanation
Indices: 62604434--62604487 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
62604424 AGTTATATGC
62604434 TAAGTTCAGTAAGTGTGAGTTCTGGT
1 TAAGTTCAGTAAGTGTGAGTTCTGGT
62604460 TAAGTTCAGTAAGTGTGAGTTCTGGT
1 TAAGTTCAGTAAGTGTGAGTTCTGGT
62604486 TA
1 TA
62604488 GAGAGGTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.07, G:0.30, T:0.39
Consensus pattern (26 bp):
TAAGTTCAGTAAGTGTGAGTTCTGGT
Found at i:62607350 original size:42 final size:43
Alignment explanation
Indices: 62607280--62607373 Score: 115
Period size: 42 Copynumber: 2.2 Consensus size: 43
62607270 TGAGATATCG
*
62607280 TGTAAGACCGTGTCTGGGACATCAGCATCGCAT-CTG-ATT-TCA
1 TGTAAGACCCTGTCTGGGACATCAGCATCG-ATACTGAATTAT-A
*
62607322 TGTAAGACCCTGTCTGGGACA-GAGGCATCGATACTGAATTATA
1 TGTAAGACCCTGTCTGGGACATCA-GCATCGATACTGAATTATA
62607365 TGTAAGACC
1 TGTAAGACC
62607374 ACATCTGGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
41 3 0.07
42 29 0.63
43 13 0.28
44 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATCAGCATCGATACTGAATTATA
Found at i:62610493 original size:24 final size:23
Alignment explanation
Indices: 62610441--62610495 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
62610431 CAATCGAATT
*
62610441 TGCACACATAGTGCTCGTCACAC
1 TGCACACATAGTGCTAGTCACAC
62610464 TCGCACACATAGTGCCATAG-CACAC
1 T-GCACACATAGTG-C-TAGTCACAC
62610489 TGCACAC
1 TGCACAC
62610496 TCAGTGCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 18 0.64
25 7 0.25
26 2 0.07
ACGTcount: A:0.29, C:0.36, G:0.16, T:0.18
Consensus pattern (23 bp):
TGCACACATAGTGCTAGTCACAC
Found at i:62617203 original size:24 final size:24
Alignment explanation
Indices: 62617157--62617275 Score: 163
Period size: 24 Copynumber: 5.0 Consensus size: 24
62617147 GCTTTATCAT
*
62617157 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62617182 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
62617206 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
62617229 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62617253 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62617276 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
23 25 0.29
24 49 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62617236 original size:47 final size:48
Alignment explanation
Indices: 62617157--62617275 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
62617147 GCTTTATCAT
*
62617157 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
**
62617206 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
62617253 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62617276 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 2 0.03
47 42 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:62617351 original size:20 final size:20
Alignment explanation
Indices: 62617326--62617385 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
62617316 TATGATTACC
62617326 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
62617346 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
62617366 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62617386 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62617460 original size:25 final size:25
Alignment explanation
Indices: 62617428--62617475 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62617418 ATACATAAAC
* * *
62617428 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62617453 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62617476 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62619456 original size:20 final size:22
Alignment explanation
Indices: 62619418--62619457 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
62619408 TTCAAATACG
*
62619418 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
62619440 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
62619458 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:62621587 original size:31 final size:31
Alignment explanation
Indices: 62621549--62621612 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
62621539 CCTTTTCATA
62621549 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
62621580 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
62621611 TT
1 TT
62621613 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:62621868 original size:24 final size:24
Alignment explanation
Indices: 62621804--62621943 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
62621794 GCTTTATCAT
*
62621804 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62621829 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
62621852 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
62621874 -TAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
62621897 ATAACAGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62621921 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62621944 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.17
22 3 0.03
23 19 0.18
24 57 0.54
25 8 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62621901 original size:45 final size:47
Alignment explanation
Indices: 62621818--62621943 Score: 177
Period size: 45 Copynumber: 2.7 Consensus size: 47
62621808 CTGGAGGCCT
* *
62621818 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCAATAACTGGGGCATA
1 AGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTAATAACAGGGGCATA
*
62621866 AGCCC-TTT-TAACTGGGGCATAAGCCCTTTTGATAACAGGGGCATA
1 AGCCCTTTTATAACTGGGGCATAAGCCCTTTTAATAACAGGGGCATA
62621911 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
62621944 TCACTTCCTC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
44 11 0.15
45 27 0.38
46 6 0.08
47 1 0.01
48 26 0.37
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
AGCCCTTTTATAACTGGGGCATAAGCCCTTTTAATAACAGGGGCATA
Found at i:62621918 original size:69 final size:69
Alignment explanation
Indices: 62621805--62621943 Score: 201
Period size: 69 Copynumber: 2.0 Consensus size: 69
62621795 CTTTATCATA
* *
62621805 TAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAGCC
1 TAACTGGAGGCATAGCCTCTTTTAATAACAGGGGCAAAGCCCTTTCAATAACTGGGGCATAAGCC
62621870 CTTT
66 CTTT
* **
62621874 TAACTGG-GGCATAAGCC-CTTTTGATAACAGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TAACTGGAGGCAT-AGCCTCTTTTAATAACAGGGGCA-AAGCCCTTTCAATAACTGGGGCATAAG
62621937 CCCTTT
64 CCCTTT
62621943 T
1 T
62621944 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
68 20 0.32
69 43 0.68
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (69 bp):
TAACTGGAGGCATAGCCTCTTTTAATAACAGGGGCAAAGCCCTTTCAATAACTGGGGCATAAGCC
CTTT
Found at i:62622019 original size:20 final size:20
Alignment explanation
Indices: 62621994--62622053 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
62621984 TATGATTACC
62621994 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
62622014 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
62622034 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62622054 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62622128 original size:25 final size:25
Alignment explanation
Indices: 62622096--62622143 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62622086 ATACATAAAC
* * *
62622096 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62622121 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62622144 CATATATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62624122 original size:20 final size:22
Alignment explanation
Indices: 62624084--62624123 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
62624074 TTCAAATACG
*
62624084 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
62624106 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
62624124 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:62626254 original size:31 final size:31
Alignment explanation
Indices: 62626216--62626279 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
62626206 CCTTTTCATA
62626216 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
62626247 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
62626278 TT
1 TT
62626280 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:62626535 original size:24 final size:24
Alignment explanation
Indices: 62626471--62626610 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
62626461 GCTTTATCAT
*
62626471 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62626496 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
62626519 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
62626541 -TAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
62626564 ATAACAGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62626588 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62626611 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.17
22 3 0.03
23 19 0.18
24 57 0.54
25 8 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62626568 original size:45 final size:47
Alignment explanation
Indices: 62626485--62626610 Score: 177
Period size: 45 Copynumber: 2.7 Consensus size: 47
62626475 CTGGAGGCCT
* *
62626485 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCAATAACTGGGGCATA
1 AGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTAATAACAGGGGCATA
*
62626533 AGCCC-TTT-TAACTGGGGCATAAGCCCTTTTGATAACAGGGGCATA
1 AGCCCTTTTATAACTGGGGCATAAGCCCTTTTAATAACAGGGGCATA
62626578 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
62626611 TCACTTCCTC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
44 11 0.15
45 27 0.38
46 6 0.08
47 1 0.01
48 26 0.37
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
AGCCCTTTTATAACTGGGGCATAAGCCCTTTTAATAACAGGGGCATA
Found at i:62626585 original size:69 final size:69
Alignment explanation
Indices: 62626472--62626610 Score: 201
Period size: 69 Copynumber: 2.0 Consensus size: 69
62626462 CTTTATCATA
* *
62626472 TAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAGCC
1 TAACTGGAGGCATAGCCTCTTTTAATAACAGGGGCAAAGCCCTTTCAATAACTGGGGCATAAGCC
62626537 CTTT
66 CTTT
* **
62626541 TAACTGG-GGCATAAGCC-CTTTTGATAACAGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TAACTGGAGGCAT-AGCCTCTTTTAATAACAGGGGCA-AAGCCCTTTCAATAACTGGGGCATAAG
62626604 CCCTTT
64 CCCTTT
62626610 T
1 T
62626611 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
68 20 0.32
69 43 0.68
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (69 bp):
TAACTGGAGGCATAGCCTCTTTTAATAACAGGGGCAAAGCCCTTTCAATAACTGGGGCATAAGCC
CTTT
Found at i:62626686 original size:20 final size:20
Alignment explanation
Indices: 62626661--62626720 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
62626651 TATGATTACC
62626661 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
62626681 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
62626701 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62626721 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62626795 original size:25 final size:25
Alignment explanation
Indices: 62626763--62626810 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62626753 ATACATAAAC
* * *
62626763 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62626788 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62626811 CATATATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62628790 original size:20 final size:22
Alignment explanation
Indices: 62628752--62628791 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
62628742 TTCAAATACG
*
62628752 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
62628774 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
62628792 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:62630922 original size:31 final size:31
Alignment explanation
Indices: 62630884--62630947 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
62630874 CCTTTTCATA
62630884 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
62630915 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
62630946 TT
1 TT
62630948 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:62631185 original size:24 final size:24
Alignment explanation
Indices: 62631139--62631279 Score: 175
Period size: 24 Copynumber: 6.0 Consensus size: 24
62631129 GCTTTATCAT
*
62631139 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62631164 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
62631188 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
62631210 -TAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
62631233 ATAACAGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62631257 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62631280 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
21 18 0.17
22 3 0.03
23 4 0.04
24 67 0.64
25 13 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62631217 original size:45 final size:47
Alignment explanation
Indices: 62631153--62631278 Score: 168
Period size: 45 Copynumber: 2.7 Consensus size: 47
62631143 CTGGAGGCCT
*
62631153 AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCAATAACTGGGGCATA
1 AGCC-CTTTT-ATAACTGGGG-CATAAGCCCTTTCAATAACAGGGGCATA
**
62631202 AGCCC-TTT-TAACTGGGGCATAAGCCCTTTTGATAACAGGGGCATA
1 AGCCCTTTTATAACTGGGGCATAAGCCCTTTCAATAACAGGGGCATA
62631247 AGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTT
62631279 TTCACTTCCT
Statistics
Matches: 70, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
44 2 0.03
45 36 0.51
46 3 0.04
47 3 0.04
48 22 0.31
49 4 0.06
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (47 bp):
AGCCCTTTTATAACTGGGGCATAAGCCCTTTCAATAACAGGGGCATA
Found at i:62631243 original size:69 final size:70
Alignment explanation
Indices: 62631140--62631279 Score: 196
Period size: 69 Copynumber: 2.0 Consensus size: 70
62631130 CTTTATCATA
* *
62631140 TAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCAATAACTGGGGCATAAG
1 TAACTGGAGGCATAGCCTCTTTTAATAACAGGGG-CATAAGCCCTTTCAATAACTGGGGCATAAG
62631204 CCCTTT
65 CCCTTT
* **
62631210 TAACTGG-GGCATAAGCC-CTTTTGATAACAGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TAACTGGAGGCAT-AGCCTCTTTTAATAACAGGGGCATAAGCCCTTTCAATAACTGGGGCATAAG
62631273 CCCTTT
65 CCCTTT
62631279 T
1 T
62631280 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
68 2 0.03
69 50 0.79
70 11 0.17
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (70 bp):
TAACTGGAGGCATAGCCTCTTTTAATAACAGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGC
CCTTT
Found at i:62631355 original size:20 final size:20
Alignment explanation
Indices: 62631330--62631389 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
62631320 TATGATTACC
62631330 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
62631350 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
62631370 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62631390 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62631464 original size:25 final size:25
Alignment explanation
Indices: 62631432--62631479 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62631422 ATACATAAAC
* * *
62631432 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62631457 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62631480 CATATATAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62633459 original size:20 final size:22
Alignment explanation
Indices: 62633421--62633460 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
62633411 TTCAAATACG
*
62633421 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
62633443 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
62633461 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:62635592 original size:31 final size:31
Alignment explanation
Indices: 62635554--62635617 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
62635544 CCTTTTCATA
62635554 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
62635585 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
62635616 TT
1 TT
62635618 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:62635855 original size:24 final size:24
Alignment explanation
Indices: 62635809--62635949 Score: 175
Period size: 24 Copynumber: 6.0 Consensus size: 24
62635799 GCTTTATCAT
*
62635809 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62635834 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
62635858 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
62635880 -TAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
62635903 ATAACAGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62635927 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62635950 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
21 18 0.17
22 3 0.03
23 4 0.04
24 67 0.64
25 13 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62635887 original size:45 final size:47
Alignment explanation
Indices: 62635823--62635948 Score: 168
Period size: 45 Copynumber: 2.7 Consensus size: 47
62635813 CTGGAGGCCT
*
62635823 AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCAATAACTGGGGCATA
1 AGCC-CTTTT-ATAACTGGGG-CATAAGCCCTTTCAATAACAGGGGCATA
**
62635872 AGCCC-TTT-TAACTGGGGCATAAGCCCTTTTGATAACAGGGGCATA
1 AGCCCTTTTATAACTGGGGCATAAGCCCTTTCAATAACAGGGGCATA
62635917 AGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTT
62635949 TTCACTTCCT
Statistics
Matches: 70, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
44 2 0.03
45 36 0.51
46 3 0.04
47 3 0.04
48 22 0.31
49 4 0.06
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (47 bp):
AGCCCTTTTATAACTGGGGCATAAGCCCTTTCAATAACAGGGGCATA
Found at i:62635913 original size:69 final size:70
Alignment explanation
Indices: 62635810--62635949 Score: 196
Period size: 69 Copynumber: 2.0 Consensus size: 70
62635800 CTTTATCATA
* *
62635810 TAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCAATAACTGGGGCATAAG
1 TAACTGGAGGCATAGCCTCTTTTAATAACAGGGG-CATAAGCCCTTTCAATAACTGGGGCATAAG
62635874 CCCTTT
65 CCCTTT
* **
62635880 TAACTGG-GGCATAAGCC-CTTTTGATAACAGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TAACTGGAGGCAT-AGCCTCTTTTAATAACAGGGGCATAAGCCCTTTCAATAACTGGGGCATAAG
62635943 CCCTTT
65 CCCTTT
62635949 T
1 T
62635950 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
68 2 0.03
69 50 0.79
70 11 0.17
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (70 bp):
TAACTGGAGGCATAGCCTCTTTTAATAACAGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGC
CCTTT
Found at i:62636025 original size:20 final size:20
Alignment explanation
Indices: 62636000--62636059 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
62635990 TATGATTACC
62636000 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
62636020 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
62636040 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62636060 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62636134 original size:25 final size:25
Alignment explanation
Indices: 62636102--62636149 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62636092 ATACATAAAC
* * *
62636102 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62636127 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62636150 CATACTATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62640258 original size:31 final size:31
Alignment explanation
Indices: 62640220--62640283 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
62640210 CCTTTTCATA
62640220 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
62640251 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
62640282 TT
1 TT
62640284 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:62640520 original size:24 final size:24
Alignment explanation
Indices: 62640474--62640591 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
62640464 GCTTTATCAT
*
62640474 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62640499 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
62640523 ATAACTGGGGCATAAG-CCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
62640545 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62640569 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62640592 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
22 16 0.19
23 13 0.15
24 43 0.51
25 13 0.15
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62640562 original size:46 final size:48
Alignment explanation
Indices: 62640474--62640591 Score: 154
Period size: 46 Copynumber: 2.5 Consensus size: 48
62640464 GCTTTATCAT
*
62640474 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCCAAAGCCCTTTCA
**
62640523 ATAACTGGGGCATAAG-CCTTTT-ATAACTGGGG-CATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
62640569 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62640592 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
45 2 0.03
46 35 0.56
47 11 0.17
48 5 0.08
49 10 0.16
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCCAAAGCCCTTTCA
Found at i:62640667 original size:20 final size:20
Alignment explanation
Indices: 62640642--62640701 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
62640632 TATGATTACC
62640642 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
62640662 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
*
62640682 TTATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62640702 CCATATTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62641081 original size:11 final size:11
Alignment explanation
Indices: 62641065--62641096 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
62641055 AAGCCCAATG
62641065 GGCCCCACTTC
1 GGCCCCACTTC
62641076 GGCCCCACTTC
1 GGCCCCACTTC
*
62641087 GGCCCAACTT
1 GGCCCCACTT
62641097 ACCAAGAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.50, G:0.19, T:0.19
Consensus pattern (11 bp):
GGCCCCACTTC
Found at i:62642768 original size:20 final size:22
Alignment explanation
Indices: 62642730--62642769 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
62642720 TTCAAATACG
*
62642730 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
62642752 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
62642770 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:62643141 original size:56 final size:56
Alignment explanation
Indices: 62643055--62643189 Score: 191
Period size: 56 Copynumber: 2.4 Consensus size: 56
62643045 GGCGTTACAG
* * * *
62643055 GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCTAACGTATAAAATGT
1 GGTCTTACTCTCACACATATATCAAAATCACATATCGATCCCAACGTATAAAACGT
* *
62643111 GGTCTTACTCTCACACATATATCAGAATCACATATCGATCCCAACGTTTAAAACGT
1 GGTCTTACTCTCACACATATATCAAAATCACATATCGATCCCAACGTATAAAACGT
*
62643167 GGTCTAACTCGT-ACACATATATC
1 GGTCTTACTC-TCACACATATATC
62643190 GATGCCATTG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
56 70 0.99
57 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCTCACACATATATCAAAATCACATATCGATCCCAACGTATAAAACGT
Found at i:62643219 original size:42 final size:42
Alignment explanation
Indices: 62643166--62643246 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
62643156 GTTTAAAACG
*
62643166 TGGTCTAACTCGTACACATATATCGATGCCATTGTCTTAACA
1 TGGTCTAACTCGCACACATATATCGATGCCATTGTCTTAACA
*
62643208 TGGTCTTACTCGCACACATATATCGATGCCATTGTCTTA
1 TGGTCTAACTCGCACACATATATCGATGCCATTGTCTTA
62643247 TTCGCACATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.35
Consensus pattern (42 bp):
TGGTCTAACTCGCACACATATATCGATGCCATTGTCTTAACA
Found at i:62648145 original size:40 final size:41
Alignment explanation
Indices: 62648085--62648304 Score: 251
Period size: 40 Copynumber: 5.6 Consensus size: 41
62648075 TATTCGAATG
* *
62648085 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
62648125 ATATCCGGACTAAGAT-CCGAAGGCACTTGTGCGAGCTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
* *
62648165 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
62648205 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * * *
62648245 ATATCCGGGCTAA-AACCCGAAGGC-CTTGTGCAAGTGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
62648284 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
62648305 ATACTTGGGT
Statistics
Matches: 153, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
38 14 0.09
39 17 0.11
40 119 0.78
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:62654986 original size:40 final size:40
Alignment explanation
Indices: 62654929--62655114 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
62654919 TCGAATGATG
* * * *
62654929 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
62654969 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
62655009 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
62655049 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
62655090 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
62655115 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62655121 original size:80 final size:79
Alignment explanation
Indices: 62654982--62655137 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 79
62654972 GGACTAAGAT
* **
62654982 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
62655046 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
62655062 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
62655125 TATATCCGGTTAA
64 TAAATCCGGTTAA
62655138 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.14
80 55 0.83
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:62664564 original size:40 final size:40
Alignment explanation
Indices: 62664504--62664687 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
62664494 TATTCGAATG
* * *
62664504 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTATTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
62664544 ATATCCAGACTAAGATCCGAAGGCATTTGTGCGAGCTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
62664584 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
62664624 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTGGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
62664664 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
62664688 CTTGTGCGAG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 116 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:62673524 original size:40 final size:40
Alignment explanation
Indices: 62673480--62673689 Score: 348
Period size: 40 Copynumber: 5.2 Consensus size: 40
62673470 CTAAGTCCGG
* *
62673480 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
*
62673522 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
62673564 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
62673604 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
62673644 ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
62673684 ATATAT
1 ATATAT
62673690 ATTATATTGA
Statistics
Matches: 163, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
40 87 0.53
42 76 0.47
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:62673542 original size:42 final size:42
Alignment explanation
Indices: 62673480--62673693 Score: 364
Period size: 42 Copynumber: 5.2 Consensus size: 42
62673470 CTAAGTCCGG
* *
62673480 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
62673522 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
62673564 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
62673604 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
62673644 ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
62673686 ATATATTA
1 ATATATTA
62673694 TATTGAGAGC
Statistics
Matches: 165, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
40 79 0.48
42 86 0.52
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:62673566 original size:82 final size:83
Alignment explanation
Indices: 62673480--62673693 Score: 362
Period size: 82 Copynumber: 2.6 Consensus size: 83
62673470 CTAAGTCCGG
* * *
62673480 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCATGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACGAAGCCTG
62673545 CGGGATTTAACCCGGATAT
66 CGGGATTTAACCCGGA-AT
62673564 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--ATATATATTACCAGCACGAAGCCTG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACGAAGCCTG
62673627 CGGGATTTAACCCGG-AT
66 CGGGATTTAACCCGGAAT
*
62673644 ATATATTACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTA
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTA
62673694 TATTGAGAGC
Statistics
Matches: 124, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
80 39 0.31
82 49 0.40
84 36 0.29
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (83 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACGAAGCCTG
CGGGATTTAACCCGGAAT
Found at i:62677744 original size:14 final size:14
Alignment explanation
Indices: 62677725--62677759 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
62677715 ATGTGACGTG
62677725 GCCATTTGAAAGAA
1 GCCATTTGAAAGAA
*
62677739 GCCATTTGAAGGAA
1 GCCATTTGAAAGAA
*
62677753 TCCATTT
1 GCCATTT
62677760 ATGCGAGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (14 bp):
GCCATTTGAAAGAA
Found at i:62681261 original size:12 final size:12
Alignment explanation
Indices: 62681244--62681268 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62681234 TTTTGGATGA
62681244 ATTTGATTGAAT
1 ATTTGATTGAAT
62681256 ATTTGATTGAAT
1 ATTTGATTGAAT
62681268 A
1 A
62681269 AATTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTTGATTGAAT
Found at i:62682732 original size:46 final size:46
Alignment explanation
Indices: 62682682--62682854 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
62682672 TGGTTGAGCA
*
62682682 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
62682728 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
62682775 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
62682821 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62682855 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:62682838 original size:93 final size:93
Alignment explanation
Indices: 62682679--62682849 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
62682669 GGATGGTTGA
* *
62682679 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
62682744 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
62682772 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
62682837 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62682850 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62683114 original size:19 final size:20
Alignment explanation
Indices: 62683077--62683114 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
62683067 ATAAGGTGGT
62683077 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
62683097 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
62683115 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:62690316 original size:46 final size:46
Alignment explanation
Indices: 62690266--62690391 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
62690256 TGGTTGAGCA
*
62690266 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
62690312 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
62690358 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62690392 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:62690653 original size:19 final size:20
Alignment explanation
Indices: 62690616--62690653 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
62690606 ATAAGGTGGT
62690616 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
62690636 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
62690654 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:62693523 original size:28 final size:28
Alignment explanation
Indices: 62693477--62693545 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
62693467 TTTAAAACCC
*
62693477 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
62693504 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
62693532 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
62693546 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:62695197 original size:20 final size:20
Alignment explanation
Indices: 62695174--62695211 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62695164 CACATCCAAA
*
62695174 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
62695194 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
62695212 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:62701534 original size:28 final size:28
Alignment explanation
Indices: 62701488--62701556 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
62701478 TTTAAAACCC
*
62701488 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
62701515 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
62701543 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
62701557 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:62703208 original size:20 final size:20
Alignment explanation
Indices: 62703185--62703222 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62703175 CACATCCAAA
*
62703185 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
62703205 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
62703223 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:62709299 original size:12 final size:12
Alignment explanation
Indices: 62709282--62709318 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
62709272 ACTCGATCTC
62709282 ATATTTTGTACA
1 ATATTTTGTACA
*
62709294 ATATTTTGTACG
1 ATATTTTGTACA
*
62709306 GTATTTTGTACA
1 ATATTTTGTACA
62709318 A
1 A
62709319 AATGATCTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (12 bp):
ATATTTTGTACA
Found at i:62725820 original size:56 final size:56
Alignment explanation
Indices: 62725753--62725883 Score: 174
Period size: 56 Copynumber: 2.3 Consensus size: 56
62725743 CAGATAGGGT
* *
62725753 CTTACTTGTACATATATATC-AGAATCACATATTGATGCAAACGTATAAAACGTGGC
1 CTTACTCGTACACATATATCGA-AATCACATATTGATGCAAACGTATAAAACGTGGC
* * * * *
62725809 CTTACTCGTACACATATATCGAAATCACGTATTGATGCCAACGTTTAAAATGTGGT
1 CTTACTCGTACACATATATCGAAATCACATATTGATGCAAACGTATAAAACGTGGC
*
62725865 CTTACTCGCACACATATAT
1 CTTACTCGTACACATATAT
62725884 TGATGCCATG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
56 65 0.98
57 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (56 bp):
CTTACTCGTACACATATATCGAAATCACATATTGATGCAAACGTATAAAACGTGGC
Found at i:62728350 original size:27 final size:27
Alignment explanation
Indices: 62728320--62728847 Score: 494
Period size: 27 Copynumber: 19.7 Consensus size: 27
62728310 TAATAGAGAG
* * *
62728320 AAATTATCGAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
62728347 AAATTATCGAAATACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
62728374 AAATTACTAAAATACCCTCAAATTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62728401 ATATTACCGAAATATCCTCGA-TTCTA
1 AAATTACCGAAATACCCTCGATTTGTA
**
62728427 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
62728454 AAATTACCG-AATACCCTCAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* ** *
62728480 AAATTACCAAAATACCCTTAATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
*
62728507 AAATTACCGAAATACCC-CTAATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
* ** *
62728534 AAAGTACTAAAATACCCTCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** ** *
62728561 AAATTATTGAAATACCCTTAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
62728588 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
62728614 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62728641 AAATTACCAAAACACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62728668 GAATTACCGAAACACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
62728695 AAATTACAAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
62728722 AAATTACCGAAATACCTTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
62728749 AAATTACCGAAACATCCC-CGATTTGTA
1 AAATTACCGAAATA-CCCTCGATTTGTA
* * * * *
62728776 AAATCATCGAAATACCTTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
62728803 AAATTACCAAAATACCCTCG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
62728830 AAATGACCGACATACCCT
1 AAATTACCGAAATACCCT
62728848 AATAACTGTT
Statistics
Matches: 410, Mismatches: 83, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
26 70 0.17
27 337 0.82
28 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:62728618 original size:134 final size:135
Alignment explanation
Indices: 62728320--62728756 Score: 427
Period size: 134 Copynumber: 3.3 Consensus size: 135
62728310 TAATAGAGAG
* * ** * * * * * *
62728320 AAATTATCGAAACACCCCCGATTTGTAAAATTATCGAAATACCATCGATTTGTAAAATTACTAAA
1 AAATTACCGAAATACCATCGATTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCAAA
* * * * * * * *
62728385 ATACCCTCAAATTGTAATATTACCGAAATATCC-TCGA-TTCTAAAATTATTGAAATACCCTCGA
66 ACACCCTCAATTTGTAAAAGTACCAAAACA-CCATCGATTTGTAAAATTATTGAAATACCCTTGA
62728448 TTTGTA
130 TTTGTA
* * * *
62728454 AAATTACCG-AATACCCTCAATTTTTAAAATTACCAAAATACCCTTAATTTATAAAATTACCGAA
1 AAATTACCGAAATACCATCGATTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACC-AA
* * * * *
62728518 ATAC-CCCT-AATTTGTAAAAGTACTAAAATACCCTCGGTTTGTAAAATTATTGAAATACCCTTA
65 A-ACACCCTCAATTTGTAAAAGTACCAAAACACCATCGATTTGTAAAATTATTGAAATACCCTTG
*
62728581 ATTTTTA
129 ATTTGTA
** * *
62728588 AAATTACCGAAATACCATCGA-TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA
1 AAATTACCGAAATACCATCGATTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCAAA
* * * * * ***
62728652 ACACCTTCGATTTGTAGAATTACCGAAACACCATCGATTTGTAAAATTACAAAAATACCCTTGAT
66 ACACCCTCAATTTGTAAAAGTACCAAAACACCATCGATTTGTAAAATTATTGAAATACCCTTGAT
62728717 TTGTA
131 TTGTA
* *
62728722 AAATTACCGAAATACCTTTGATTTGTAAAATTACC
1 AAATTACCGAAATACCATCGATTTGTAAAATTACC
62728757 GAAACATCCC
Statistics
Matches: 247, Mismatches: 48, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
132 4 0.02
133 67 0.27
134 154 0.62
135 22 0.09
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (135 bp):
AAATTACCGAAATACCATCGATTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCAAA
ACACCCTCAATTTGTAAAAGTACCAAAACACCATCGATTTGTAAAATTATTGAAATACCCTTGAT
TTGTA
Found at i:62731477 original size:46 final size:44
Alignment explanation
Indices: 62731420--62731596 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 44
62731410 ATGTTTGGGC
* *
62731420 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGCTGCGA
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGCTGCGA
*** * *
62731464 ATGTCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG--GCT-GCGA
*
62731513 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGCTGCG-A
* * *
62731558 CACCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 -ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62731597 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.61
47 33 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGCTGCGA
Found at i:62731576 original size:93 final size:93
Alignment explanation
Indices: 62731417--62731588 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
62731407 AAGATGTTTG
* *** *
62731417 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGCTGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
62731482 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
62731510 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
*
62731575 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
62731589 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:62736980 original size:46 final size:44
Alignment explanation
Indices: 62736923--62737096 Score: 168
Period size: 46 Copynumber: 3.8 Consensus size: 44
62736913 GTTTGGGCAT
* *
62736923 CGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGACGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GC-AACGTC
*** * * * *
62736969 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAGC-A-ACGTC
* **
62737016 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GC-AACGTC
*
62737062 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62737097 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 69 0.66
47 35 0.34
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (44 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGCAACGTC
Found at i:62739990 original size:28 final size:28
Alignment explanation
Indices: 62739950--62740013 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
62739940 TGGGAAGTAG
* * * *
62739950 TTGGGCTTGATGGGCTATATGAATGTGA
1 TTGGGCCTGATGGGCTATACGAACGAGA
62739978 TTGGGCCTGATGGGCTATACGAACGAGA
1 TTGGGCCTGATGGGCTATACGAACGAGA
62740006 TTGGGCCT
1 TTGGGCCT
62740014 AAAAGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.14, G:0.36, T:0.30
Consensus pattern (28 bp):
TTGGGCCTGATGGGCTATACGAACGAGA
Found at i:62740386 original size:27 final size:27
Alignment explanation
Indices: 62740330--62740825 Score: 443
Period size: 27 Copynumber: 18.6 Consensus size: 27
62740320 TAATAAAGAG
* * * * *
62740330 AAATTATCGAAACACCCCCGGTTTCTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62740357 AAATTATCGAAATACCATCGATTTGCA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
62740384 AAATTATTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62740411 ATATTACCGAAATATCCTCGA-TTCTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
62740437 AAATTATCGAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62740464 AAATTACCG-AACACCCTCAATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* **
62740490 AAATTACCAAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
62740517 AAATTACCGAAATACCC-CTGATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
** *
62740544 AAATTACTAAAATACCCTCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** **
62740571 AAATTATTGAAATACCCTTAATTT-TA
1 AAATTACCGAAATACCCTCGATTTGTA
*
62740597 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
62740623 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62740650 AAATTACCAAAACACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
62740677 GAATTACCGAAACACCATCGATTTGT-
1 AAATTACCGAAATACCCTCGATTTGTA
** *
62740703 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
62740730 AAATTACCGAAATACCTTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
62740757 AAATTACAGAAACATA-CCT-GATTTGTA
1 AAATTACCG-AA-ATACCCTCGATTTGTA
* * * * *
62740784 AAATCATCGAAATACCTTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
*
62740811 AAATTACCAAAATAC
1 AAATTACCGAAATAC
62740826 TCTCATAGTG
Statistics
Matches: 381, Mismatches: 76, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
25 5 0.01
26 105 0.28
27 263 0.69
28 5 0.01
29 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:62740519 original size:80 final size:80
Alignment explanation
Indices: 62740355--62740787 Score: 443
Period size: 80 Copynumber: 5.4 Consensus size: 80
62740345 CCCCGGTTTC
* * ** *
62740355 TAAAATTATCGAAATACCATCGATTTGCAAAATTATTGAAATACCCTCAATTTGTAATATTACCG
1 TAAAATTACCGAAATACCATCGATTTGTAAAATTACAG-AATACCCTCAATTTGTAAAATTACCG
* * *
62740420 AAATATCCTCGA-TTC
65 AAATACCCTTGATTTG
* * * * * * *
62740435 TAAAATTATCGAAATACCCTTGATTTGTAAAATTACCGAACACCCTCAATTTTTAAAATTACCAA
1 TAAAATTACCGAAATACCATCGATTTGTAAAATTACAGAATACCCTCAATTTGTAAAATTACCGA
*
62740500 AATACCCTTAATTTG
66 AATACCCTTGATTTG
* * ** **
62740515 TAAAATTACCGAAATACC-CCTGATTTGTAAAATTACTAAAATACCCTCGGTTTGTAAAATTATT
1 TAAAATTACCGAAATACCATC-GATTTGTAAAATTAC-AGAATACCCTCAATTTGTAAAATTACC
*
62740579 GAAATACCCTTAATTT-
64 GAAATACCCTTGATTTG
*
62740595 TAAAATTACCGAAATACCATCGA-TTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACC-
1 TAAAATTACCGAAATACCATCGATTTGTAAAATTACAG-AATACCCTCAATTTGTAAAATTACCG
62740658 AAA-ACACCTTCGATTTG
65 AAATAC-CCTT-GATTTG
* * * **
62740675 TAGAATTACCGAAACACCATCGATTTGT-AAATTACTAAAATACCCTTGATTTGTAAAATTACCG
1 TAAAATTACCGAAATACCATCGATTTGTAAAATTAC-AGAATACCCTCAATTTGTAAAATTACCG
*
62740739 AAATACCTTTGATTTG
65 AAATACCCTTGATTTG
*
62740755 TAAAATTACAGAAACATACC-T-GATTTGTAAAAT
1 TAAAATTACCG-AA-ATACCATCGATTTGTAAAAT
62740788 CATCGAAATA
Statistics
Matches: 295, Mismatches: 43, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
77 2 0.01
78 7 0.02
79 68 0.23
80 160 0.54
81 52 0.18
82 6 0.02
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (80 bp):
TAAAATTACCGAAATACCATCGATTTGTAAAATTACAGAATACCCTCAATTTGTAAAATTACCGA
AATACCCTTGATTTG
Found at i:62740753 original size:53 final size:54
Alignment explanation
Indices: 62740355--62740825 Score: 449
Period size: 53 Copynumber: 8.8 Consensus size: 54
62740345 CCCCGGTTTC
* * * *** **
62740355 TAAAATTATCGAAATACCATCGATTTGCAAAATTATTGAAATACCCTCAATTTG
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTG
* * * * *
62740409 TAATATTACCGAAATATCCTCGA-TTCTAAAATTATCGAAATACCCTTGATTTG
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTG
* * * *
62740462 TAAAATTACCG-AACACCCTCAATTTTTAAAATTACCAAAATACCCTTAATTTG
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTG
* * *
62740515 TAAAATTACCGAAATACCC-CTGATTTGTAAAATTACTAAAATACCCTCGGTTTG
1 TAAAATTACCGAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTTGATTTG
** ** * * *
62740569 TAAAATTATTGAAATACCCTTAATTT-TAAAATTACCGAAATACCATCGA-TTG
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTG
* * *
62740621 TAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAACA-CCTTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTT-GATTTG
* * * *
62740675 TAGAATTACCGAAACACCATCGATTTGT-AAATTACTAAAATACCCTTGATTTG
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTG
* * *
62740728 TAAAATTACCGAAATACCTTTGATTTGTAAAATTACAGAAACATA-CC-TGATTTG
1 TAAAATTACCGAAATACCCTCGATTTGTAAAATTAC-CAAA-ATACCCTTGATTTG
* * * * *
62740782 TAAAATCATCGAAATACCTTTG-TAGTGTAAAATTACCAAAATAC
1 TAAAATTACCGAAATACCCTCGAT-TTGTAAAATTACCAAAATAC
62740826 TCTCATAGTG
Statistics
Matches: 350, Mismatches: 54, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
52 40 0.11
53 154 0.44
54 148 0.42
55 5 0.01
56 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTG
Found at i:62740838 original size:54 final size:54
Alignment explanation
Indices: 62740726--62740853 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 54
62740716 ACCCTTGATT
* * * * *
62740726 TGTAAAATTACCGAAATACCTTTGATTTGTAAAATTACAGAAACATACCTGATT
1 TGTAAAATCACCGAAATACCTTTGATGTGTAAAATTACACAAACATACCTCATG
*
62740780 TGTAAAATCATCGAAATACCTTTG-TAGTGTAAAATTAC-CAAA-ATACTCTCATAG
1 TGTAAAATCACCGAAATACCTTTGAT-GTGTAAAATTACACAAACATAC-CTCAT-G
* * *
62740834 TGTAAAGTGACCGACATACC
1 TGTAAAATCACCGAAATACC
62740854 CCTTTAATTT
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
52 4 0.07
53 8 0.13
54 49 0.80
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.30
Consensus pattern (54 bp):
TGTAAAATCACCGAAATACCTTTGATGTGTAAAATTACACAAACATACCTCATG
Found at i:62744735 original size:26 final size:27
Alignment explanation
Indices: 62744706--62744829 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
62744696 TTAGTTTACC
*
62744706 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCGAAATACCCCCAGTTTGTA
* *
62744732 AAATTACC-AAAGTACCCTCAGTTTATA
1 AAATTACCGAAA-TACCCCCAGTTTGTA
* * *
62744759 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTGTA
* *
62744786 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCCCAGTTTGTA
*
62744813 AAATTACTGAAATACCC
1 AAATTACCGAAATACCC
62744830 TCGACATGTA
Statistics
Matches: 84, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
25 3 0.04
26 16 0.19
27 61 0.73
28 4 0.05
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGTTTGTA
Found at i:62744766 original size:27 final size:26
Alignment explanation
Indices: 62744727--62744860 Score: 128
Period size: 27 Copynumber: 5.0 Consensus size: 26
62744717 ATACCCCCAG
62744727 TTGTAAAATTACCAAAGTACCCTC-AGT
1 TTGTAAAATTACCAAA-TACCCTCGA-T
* *
62744754 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
62744781 TTGTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* * *
62744808 TTGCAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
62744835 ATGTAAAATTATCAAAGTACCCTCGA
1 TTGTAAAATTACCAAA-TACCCTCGA
62744861 ATTACAAAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
26 6 0.07
27 76 0.85
28 7 0.08
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:62744859 original size:81 final size:80
Alignment explanation
Indices: 62744706--62744860 Score: 172
Period size: 81 Copynumber: 1.9 Consensus size: 80
62744696 TTAGTTTACC
* * **
62744706 AAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCCTCAGTTTATAAAATTACCCAAA
1 AAATTACCGAAATACCCCCAGTTGCAAAATTACCAAAGTACCCTCAGCATATAAAATTACCCAAA
*
62744771 TATCCTCGATTTGTA
66 TACCCTCGATTTGTA
* * * *
62744786 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAA-TACCCTC-GACATGTAAAATTA-TC
1 AAATTACCGAAATACCCCCAG-TTGCAAAATTAC-CAAAGTACCCTCAG-CATATAAAATTACCC
62744848 AAAGTACCCTCGA
63 AAA-TACCCTCGA
62744861 ATTACAAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
80 24 0.39
81 35 0.56
82 3 0.05
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (80 bp):
AAATTACCGAAATACCCCCAGTTGCAAAATTACCAAAGTACCCTCAGCATATAAAATTACCCAAA
TACCCTCGATTTGTA
Found at i:62744874 original size:54 final size:54
Alignment explanation
Indices: 62744698--62744874 Score: 207
Period size: 54 Copynumber: 3.3 Consensus size: 54
62744688 AGAATACTTT
* * *
62744698 AGTTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
* ** * *
62744751 AGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTC
* * *
62744805 AGTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
*
62744859 -GAATTACAAAATTACT
1 AG-TTTACAAAATTACT
62744875 ATTTTACCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
53 24 0.23
54 76 0.74
55 3 0.03
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (54 bp):
AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
Found at i:62744882 original size:27 final size:27
Alignment explanation
Indices: 62744852--62745046 Score: 246
Period size: 27 Copynumber: 7.2 Consensus size: 27
62744842 ATTATCAAAG
* *
62744852 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
62744879 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
62744906 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
62744933 TACCCTTGATTGATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
** *
62744960 TACCCTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
62744987 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
62745014 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
62745041 TACCCT
1 TACCCT
62745047 TAAGGTGTTA
Statistics
Matches: 148, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:62745047 original size:81 final size:81
Alignment explanation
Indices: 62744852--62745049 Score: 279
Period size: 81 Copynumber: 2.4 Consensus size: 81
62744842 ATTATCAAAG
* * * ** * * *
62744852 TACCCTCGAATTACAAAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTAATTTACAAAATTACCATTTTACCCTTGATT
62744917 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* * * *
62744933 TACCCTTGATTGATAGAATTACCATTTTACCCTTAATTTACAAAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTAATTTACAAAATTACCATTTTACCCTTGATT
62744998 TACAAAATTACCATTT
66 TACAAAATTACCATTT
*
62745014 TACCCTCGATTTACAGAATTACCGTTTTACCCTTAA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTAA
62745050 GGTGTTAAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 101 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTTAATTTACAAAATTACCATTTTACCCTTGATT
TACAAAATTACCATTT
Found at i:62745326 original size:27 final size:26
Alignment explanation
Indices: 62745282--62745333 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62745272 CTCACTGCAA
*
62745282 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
62745309 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
62745334 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:62745614 original size:25 final size:25
Alignment explanation
Indices: 62745585--62745653 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
62745575 GACACTGATA
* *
62745585 CTGATTCTAATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
* *
62745610 TTGATTCTGATTCTGATTTTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
62745635 CTGATTCTGATTCTGATTC
1 CTGATTCTGATTCTGATTC
62745654 CCATTTTCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:62745620 original size:6 final size:6
Alignment explanation
Indices: 62745551--62745653 Score: 50
Period size: 6 Copynumber: 16.7 Consensus size: 6
62745541 TTGCATTCAC
* ** * * *
62745551 ATTCTG ATTTTG ATTCTG -TTACCTG ACACTG ATACTG ATTCTA ATTCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
62745600 ATTCTG -TCACTTG ATTCTG ATTCTG ATTTTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
62745650 ATTC
1 ATTC
62745654 CCATTTTCAT
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 4 0.05
6 60 0.81
7 8 0.11
8 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:62746368 original size:27 final size:27
Alignment explanation
Indices: 62746338--62746790 Score: 477
Period size: 27 Copynumber: 16.9 Consensus size: 27
62746328 AATACTATCA
* *
62746338 ATTTGCAAAATTACTGAAATACCCTTG
1 ATTTGTAAAATTACTGAAATACCCTCG
* * *
62746365 ATTTGTAATATTACCGAAATATCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
*
62746392 A-TTCTAAAATTACTGAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
* * *
62746418 ATTTGTAAAATTACCGAAACACCCTCA
1 ATTTGTAAAATTACTGAAATACCCTCG
* * *
62746445 ATTTGTAAAGTTACTAAAATACCCT-T
1 ATTTGTAAAATTACTGAAATACCCTCG
* *
62746471 ACTTTGTAAAATTACCGAAATACCCCCG
1 A-TTTGTAAAATTACTGAAATACCCTCG
* ** *
62746499 ATCTACAAAATTACTAAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
* **
62746526 ATTTGTAAAATTATTGAAATACCCTTA
1 ATTTGTAAAATTACTGAAATACCCTCG
**
62746553 ATTTGTAAAATTGTTGAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
*
62746580 A-TTGTAAAATTATTGAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
* *
62746606 ATTTGTAAAATTACTGAAACACCCTCT
1 ATTTGTAAAATTACTGAAATACCCTCG
** *
62746633 ATTTGTAAAATTACCAAAACACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
*
62746660 ATTTGTAAAATTA-TCGAAACACCCTCG
1 ATTTGTAAAATTACT-GAAATACCCTCG
* *
62746687 ATTTGTAAAATTACTAAAATACCCTTG
1 ATTTGTAAAATTACTGAAATACCCTCG
* * *
62746714 ATTTGTAAAATTACCGAAACATCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
* * *
62746741 ATTTGTAAAATTA-TCAAAATACCTTTG
1 ATTTGTAAAATTACT-GAAATACCCTCG
*
62746768 -TAGTGTAAAATTACTGAAATACC
1 AT-TTGTAAAATTACTGAAATACC
62746791 TTTGTAGTGT
Statistics
Matches: 353, Mismatches: 64, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
26 49 0.14
27 301 0.85
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCTCG
Found at i:62746791 original size:27 final size:27
Alignment explanation
Indices: 62746744--62746805 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
62746734 ATCCTCGATT
62746744 TGTAAAATTATCAAAATACCTTTGTAG
1 TGTAAAATTATCAAAATACCTTTGTAG
*
62746771 TGTAAAATTA-CTGAAATACCTTTGTAG
1 TGTAAAATTATC-AAAATACCTTTGTAG
62746798 TGTAAAAT
1 TGTAAAAT
62746806 GACCGACATA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
26 1 0.03
27 32 0.97
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCTTTGTAG
Done.