Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 210 of 770
Found at i:62746816 original size:27 final size:27
Alignment explanation
Indices: 62746757--62746835 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
62746747 AAAATTATCA
* *
62746757 AAATACCTTTGTAGTGTAAAATTACTG
1 AAATACCTTTGTAGTGTAAAATGACCG
62746784 AAATACCTTTGTAGTGTAAAATGACCG
1 AAATACCTTTGTAGTGTAAAATGACCG
* ** * *
62746811 ACATACCCCTATAGGGTAAAATGAC
1 AAATACCTTTGTAGTGTAAAATGAC
62746836 TATTTTGCCC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
AAATACCTTTGTAGTGTAAAATGACCG
Found at i:62749028 original size:2 final size:2
Alignment explanation
Indices: 62749021--62749062 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
62749011 CATGATTCAC
62749021 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62749063 TGGCCTAAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62752581 original size:19 final size:19
Alignment explanation
Indices: 62752557--62752604 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
62752547 GGGGTATATC
*
62752557 GGTAATTTTGCTCTTTAGG
1 GGTAATTTCGCTCTTTAGG
62752576 GGTAATTTCGCTCTTTAGG
1 GGTAATTTCGCTCTTTAGG
62752595 GGTAATTTCG
1 GGTAATTTCG
62752605 TGATCTACGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.17, C:0.12, G:0.27, T:0.44
Consensus pattern (19 bp):
GGTAATTTCGCTCTTTAGG
Found at i:62754256 original size:20 final size:20
Alignment explanation
Indices: 62754233--62754270 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62754223 CACATCCAAA
*
62754233 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
62754253 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
62754271 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:62759232 original size:86 final size:85
Alignment explanation
Indices: 62759078--62759236 Score: 194
Period size: 86 Copynumber: 1.9 Consensus size: 85
62759068 TATAGCTTGT
* * * * * * * *
62759078 ACAATGTCATATCTCAGATATGGTCTTACATGTTATCACATATCAATGCCACTGTCCGAAACAGG
1 ACAATGTCATATCCCAGACATGGTCTTACACGTAATCAAATATCAACGCCAATGTCCCAAACAGG
62759143 GTCTTACACAAAATCGATTA
66 GTCTTACACAAAATCGATTA
* *
62759163 ACAATGTCAATGTCCCAGACATGGTCTTACACGTAATCATAATAT-AACGCCAATGTCCCAGACA
1 ACAATGTC-ATATCCCAGACATGGTCTTACACGTAATCA-AATATCAACGCCAATGTCCCAAACA
*
62759227 TGGTCTTACA
64 GGGTCTTACA
62759237 AGTAATCACA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
85 8 0.13
86 49 0.80
87 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (85 bp):
ACAATGTCATATCCCAGACATGGTCTTACACGTAATCAAATATCAACGCCAATGTCCCAAACAGG
GTCTTACACAAAATCGATTA
Found at i:62760079 original size:30 final size:30
Alignment explanation
Indices: 62760043--62760103 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
62760033 CTTCTTTTTC
*
62760043 TTTCTCAATTTTAGTTGATAGCAAGAAAGA
1 TTTCTCAAATTTAGTTGATAGCAAGAAAGA
62760073 TTTCTCAAATTTAGTTGATAGCAAGAAAGA
1 TTTCTCAAATTTAGTTGATAGCAAGAAAGA
62760103 T
1 T
62760104 GAACACAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (30 bp):
TTTCTCAAATTTAGTTGATAGCAAGAAAGA
Found at i:62764328 original size:40 final size:40
Alignment explanation
Indices: 62764269--62764437 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
62764259 CGGGACTTTA
* * *
62764269 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
62764309 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
62764349 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
62764389 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
62764429 CCCGGATAT
1 CCCGGATAT
62764438 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:62772425 original size:40 final size:40
Alignment explanation
Indices: 62772366--62772534 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
62772356 CGGGACTTTA
* * *
62772366 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
62772406 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
62772446 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
62772486 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
62772526 CCCGGATAT
1 CCCGGATAT
62772535 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:62774909 original size:18 final size:18
Alignment explanation
Indices: 62774886--62774934 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
62774876 CTTGGCCCAT
62774886 TGCAGTAACAATAGA-CAG
1 TGCAGTAACAATA-ATCAG
* *
62774904 TGCAGTAATAGTAATCAG
1 TGCAGTAACAATAATCAG
62774922 TGCAGTAACAATA
1 TGCAGTAACAATA
62774935 TACAAGTCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAATAATCAG
Found at i:62775457 original size:27 final size:27
Alignment explanation
Indices: 62775244--62775439 Score: 304
Period size: 27 Copynumber: 7.3 Consensus size: 27
62775234 ATACACACAT
* *
62775244 CACATAAGGGCAAAATAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
62775271 CATATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
62775298 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
62775325 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
62775352 CACAAAAGGGCAAAACA-TCCATTTTAC
1 CACATAAGGGCAAAACAGT-CATTTTAC
*
62775379 CACATAAGGGCAAAACAGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
62775406 CACATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
62775433 CACATAA
1 CACATAA
62775440 TGACAAAATA
Statistics
Matches: 155, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
26 1 0.01
27 153 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.13, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:62777453 original size:37 final size:37
Alignment explanation
Indices: 62777400--62777490 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
62777390 TATAAAAGAA
62777400 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
62777437 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
62777474 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
62777491 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:62777641 original size:49 final size:49
Alignment explanation
Indices: 62777586--62777791 Score: 313
Period size: 49 Copynumber: 4.4 Consensus size: 49
62777576 TTTTACATTA
62777586 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
62777635 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
62777684 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
62777724 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
62777773 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
62777792 CACATATGTA
Statistics
Matches: 144, Mismatches: 4, Indels: 18
0.87 0.02 0.11
Matches are distributed among these distances:
40 37 0.26
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 101 0.70
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:62777703 original size:89 final size:89
Alignment explanation
Indices: 62777607--62777786 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
62777597 TTATCACATA
62777607 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
62777672 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
62777696 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
* * * *
62777761 TTCATCGCATTGGCCATTCGGCCT
66 TTCACCACATCGGCCATTAGGCCT
62777785 TA
1 TA
62777787 TCACACACAT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.28, C:0.33, G:0.09, T:0.29
Consensus pattern (89 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCT
Found at i:62781191 original size:29 final size:29
Alignment explanation
Indices: 62781155--62781347 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
62781145 TGTTGAAAAA
*
62781155 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
62781184 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
62781213 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
62781242 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
62781271 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
62781300 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
62781329 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
62781348 TATTCATTCG
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:62781578 original size:40 final size:40
Alignment explanation
Indices: 62781521--62781724 Score: 293
Period size: 40 Copynumber: 5.1 Consensus size: 40
62781511 CGAATACACG
* *
62781521 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
62781561 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
62781601 TCACTAGCACGAATGCTCTTC-GGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
62781640 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
62781680 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
62781720 TCACT
1 TCACT
62781725 CTCAATTCTC
Statistics
Matches: 154, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 38 0.25
40 116 0.75
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:62781647 original size:79 final size:79
Alignment explanation
Indices: 62781521--62781724 Score: 291
Period size: 79 Copynumber: 2.6 Consensus size: 79
62781511 CGAATACACG
* * *
62781521 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
*
62781586 CTTTGCCCGGATACA
65 CTTAGCCCGGATACA
* * *
62781601 TCACTAGCACGAATGCTCTTCGGACTTTGCCCGGATACATCACTAGCATGAATGCTCTTCGGAAC
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
62781666 TTAGTCCGGATATA
66 TTAGCCCGGATACA
* *
62781680 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACATCACT
62781725 CTCAATTCTC
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 73 0.66
80 37 0.34
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (79 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
TTAGCCCGGATACA
Found at i:62783589 original size:37 final size:37
Alignment explanation
Indices: 62783536--62783626 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
62783526 TATAAAAGAA
62783536 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
62783573 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
62783610 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
62783627 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:62783775 original size:49 final size:49
Alignment explanation
Indices: 62783721--62783872 Score: 241
Period size: 49 Copynumber: 3.3 Consensus size: 49
62783711 TTTTACATTA
62783721 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
62783770 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
62783819 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
62783859 GCCATTAGGCCTTA
1 GCCATTAGGCCTTA
62783873 CTATTTCACA
Statistics
Matches: 98, Mismatches: 0, Indels: 14
0.88 0.00 0.12
Matches are distributed among these distances:
40 37 0.38
41 1 0.01
42 1 0.01
43 1 0.01
49 58 0.59
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:62783835 original size:40 final size:40
Alignment explanation
Indices: 62783791--62783906 Score: 204
Period size: 40 Copynumber: 3.0 Consensus size: 40
62783781 TTATCACATA
62783791 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
62783831 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
62783871 TAC-T--A-TTTCACATTCACCACATCGGCCATTAGGCCT
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
62783907 ATCACATATA
Statistics
Matches: 76, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
36 31 0.41
37 1 0.01
39 1 0.01
40 43 0.57
ACGTcount: A:0.27, C:0.34, G:0.10, T:0.28
Consensus pattern (40 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
Found at i:62791027 original size:40 final size:40
Alignment explanation
Indices: 62790982--62791148 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
62790972 CGGAATATAA
62790982 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
62791022 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62791062 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTA-A
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
62791101 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
62791141 CCGGATAT
1 CCGGATAT
62791149 CATTCAATTT
Statistics
Matches: 100, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 30 0.30
40 70 0.70
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62792875 original size:40 final size:40
Alignment explanation
Indices: 62792820--62792943 Score: 230
Period size: 40 Copynumber: 3.1 Consensus size: 40
62792810 GGGCTGTCAC
*
62792820 ATATAACAACTCGCACAAATGCTTTCGGGTCTTAGCCCGG
1 ATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
62792860 ATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 ATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
*
62792900 ATATAACAACTCGCACAAATGCCTTCGGGGCTTAGCCCGG
1 ATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
62792940 ATAT
1 ATAT
62792944 CATTCAAATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
ATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
Found at i:62796030 original size:48 final size:47
Alignment explanation
Indices: 62795976--62796120 Score: 193
Period size: 48 Copynumber: 3.0 Consensus size: 47
62795966 GGTTATGTGT
62795976 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-TATGA
* * *
62796024 GATCCCATGTAAGACAATGTCTGGGACAT-GCATTGGCATCGACATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-ATATGA
* * * *
62796071 GATCCCATGTAAGACCATATATGGGATATGGTATTGGCATCAATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-ATATGA
62796119 GA
1 GA
62796121 CATCGTGTAA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
47 39 0.46
48 45 0.54
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATATGA
Found at i:62806266 original size:37 final size:37
Alignment explanation
Indices: 62806216--62806289 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
62806206 GCAAAGTAGG
62806216 TTGCATCATATTGTCAGTTTTAGTAGAATGGTTTAGA
1 TTGCATCATATTGTCAGTTTTAGTAGAATGGTTTAGA
62806253 TTGCATCATATTGTCAGTTTTAGTAGAATGGTTTAGA
1 TTGCATCATATTGTCAGTTTTAGTAGAATGGTTTAGA
62806290 CAATCACTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (37 bp):
TTGCATCATATTGTCAGTTTTAGTAGAATGGTTTAGA
Found at i:62809154 original size:71 final size:71
Alignment explanation
Indices: 62809066--62809229 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
62809056 GAGATGTATC
62809066 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
62809131 AGGACA
66 AGGACA
*
62809137 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
62809202 CGGACA
66 AGGACA
62809208 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
62809230 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:62821995 original size:21 final size:21
Alignment explanation
Indices: 62821971--62822014 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
62821961 ATCCTAATCT
62821971 ATTCTAGAGATGAGGTAAAGC
1 ATTCTAGAGATGAGGTAAAGC
62821992 ATTCTAGAGATGAGGTAAAGC
1 ATTCTAGAGATGAGGTAAAGC
62822013 AT
1 AT
62822015 ACCGAACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.27, T:0.25
Consensus pattern (21 bp):
ATTCTAGAGATGAGGTAAAGC
Found at i:62827034 original size:2 final size:2
Alignment explanation
Indices: 62827022--62827052 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
62827012 ATTCGGCTAT
*
62827022 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62827053 TCACATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:62831608 original size:29 final size:29
Alignment explanation
Indices: 62831576--62831710 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
62831566 ATACCCTCCG
** * *
62831576 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
62831605 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
62831634 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
62831663 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* *
62831692 AGCACGCACACTTACTGCC
1 AGCTCGCACACTTAGTGCC
62831711 GATCTCGTCA
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 91 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:62831703 original size:58 final size:58
Alignment explanation
Indices: 62831522--62831711 Score: 170
Period size: 58 Copynumber: 3.3 Consensus size: 58
62831512 TACTCGATTT
* * * *** *
62831522 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
62831580 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
62831638 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
*
62831696 CGCACACTTACTGCCG
1 CGCACACTTAGTGCCG
62831712 ATCTCGTCAC
Statistics
Matches: 104, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 93 0.89
59 3 0.03
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:62840500 original size:33 final size:33
Alignment explanation
Indices: 62840458--62840522 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
62840448 AAAAAAGTTG
*
62840458 TAATTTTTTTTCTGGAATTTAATTTCTTGTTTA
1 TAATTTTTTTCCTGGAATTTAATTTCTTGTTTA
62840491 TAATTTTTTTCCTGGAATTTAATTTCTTGTTT
1 TAATTTTTTTCCTGGAATTTAATTTCTTGTTT
62840523 CCTTTAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.20, C:0.08, G:0.09, T:0.63
Consensus pattern (33 bp):
TAATTTTTTTCCTGGAATTTAATTTCTTGTTTA
Found at i:62846003 original size:14 final size:14
Alignment explanation
Indices: 62845984--62846011 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
62845974 CAAATTACAT
62845984 GTTAGAATAGTATC
1 GTTAGAATAGTATC
62845998 GTTAGAATAGTATC
1 GTTAGAATAGTATC
62846012 ATTAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GTTAGAATAGTATC
Found at i:62848645 original size:16 final size:16
Alignment explanation
Indices: 62848626--62848656 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62848616 CTTCTTCACT
62848626 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
62848642 TACTTACTTACTTAA
1 TACTCACTTACTTAA
62848657 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:62848662 original size:20 final size:20
Alignment explanation
Indices: 62848623--62848662 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
62848613 AAACTTCTTC
* *
62848623 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
62848643 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
62848663 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:62849040 original size:55 final size:53
Alignment explanation
Indices: 62848848--62849104 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 53
62848838 ATACGCGGGT
* * * * *
62848848 AACTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
* *
62848896 AAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
* * *
62848950 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
62849004 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-AA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
62849058 AACTTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AAC-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
62849105 AAACCCTAAT
Statistics
Matches: 174, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 37 0.21
52 2 0.01
53 48 0.28
54 14 0.08
55 71 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:62849041 original size:108 final size:110
Alignment explanation
Indices: 62848897--62849097 Score: 325
Period size: 108 Copynumber: 1.8 Consensus size: 110
62848887 ATCCTTTTGA
* * **
62848897 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAC-TCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACTTCACCAAT
62848960 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
62849005 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAAAAACTTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACTTCACCAAT
62849070 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
62849098 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 50 0.60
109 6 0.07
110 28 0.33
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACTTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:62852145 original size:48 final size:48
Alignment explanation
Indices: 62852071--62853042 Score: 1719
Period size: 48 Copynumber: 20.1 Consensus size: 48
62852061 TATATAAATG
62852071 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852119 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
62852167 TGTGGTAAATCCGAATGGCTAATGTGAAATATGTATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATG--TATGAGATATGTATA
62852217 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852265 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
62852313 TGTGGTAAAGCCGAATGGCTAATGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852361 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAGATATGTATA
* *
62852411 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAGATATGTATA
* * *
62852461 TGTTGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852509 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852557 TATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
62852605 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
62852653 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
62852701 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852749 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852797 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
62852845 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
62852893 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852941 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
62852989 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
62853037 TTGTGG
1 -TGTGG
62853043 CCGAATGACC
Statistics
Matches: 894, Mismatches: 25, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
48 748 0.84
49 9 0.01
50 137 0.15
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:62853276 original size:37 final size:37
Alignment explanation
Indices: 62853168--62853276 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
62853158 GGAAATATAT
*
62853168 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
62853205 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * **
62853242 TCCGGGTAAGACTCGATAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
62853277 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:62856379 original size:26 final size:26
Alignment explanation
Indices: 62856333--62856385 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
62856323 TCAAACATGC
*
62856333 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
62856359 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
62856385 A
1 A
62856386 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:62857903 original size:32 final size:32
Alignment explanation
Indices: 62857866--62857930 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
62857856 AATGCTTATC
62857866 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
62857898 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
62857930 A
1 A
62857931 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:62858906 original size:47 final size:47
Alignment explanation
Indices: 62858837--62858963 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 47
62858827 AATCATAAGT
* * * *
62858837 ACCTATACCATAGCCCGAAGCCAAATTAAGGTAACTTATCCCGGAGC
1 ACCTATACCATGGCCCGTAGCCAAATTAAGGTAACTCATCCCGGAAC
** * * * * *
62858884 ACCTATACCATGGCTTGTAGCCAAATCAAGGTAACTCCTCTCTGAAT
1 ACCTATACCATGGCCCGTAGCCAAATTAAGGTAACTCATCCCGGAAC
62858931 ACCTATACCATGGCCCGTAGCCAAATTAAGGTA
1 ACCTATACCATGGCCCGTAGCCAAATTAAGGTA
62858964 TCACTCGCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (47 bp):
ACCTATACCATGGCCCGTAGCCAAATTAAGGTAACTCATCCCGGAAC
Found at i:62864843 original size:49 final size:49
Alignment explanation
Indices: 62864728--62865044 Score: 222
Period size: 49 Copynumber: 6.6 Consensus size: 49
62864718 TAATGTCGAT
* * * ** *
62864728 GCCATGTCCCAGACATGGTCTTACACTGGCTCATC--CATC-AAGTTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCGAGGCCGAC
* * * * *
62864775 GCCCTATCCCACACATGGTCTTACATTGACTATCGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGAC
*
62864824 GCTATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGAC
* * * * * *
62864873 TCCATGTCCCAGACATGGTCTTACACT-AGCTCTTACATATCCG-TGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-AAAT-CGAGGCCGAC
* * *** * * *
62864923 GCCATGTCCCAGAGATGGTCTTACACT-AGCTCTC-GTCTCAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCAAAATCGAGGCCGAC
* * * * * * *
62864971 GCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-GTGGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGAC
62865019 G-CATGTCCCAGACAT-GTCTTACACTG
1 GCCATGTCCCAGACATGGTCTTACACTG
62865045 GCACACAAAT
Statistics
Matches: 222, Mismatches: 39, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
46 14 0.06
47 41 0.18
48 49 0.22
49 77 0.35
50 39 0.18
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCCGAC
Found at i:62870682 original size:51 final size:51
Alignment explanation
Indices: 62870604--62870854 Score: 355
Period size: 51 Copynumber: 4.9 Consensus size: 51
62870594 ATAGATACAT
*
62870604 AGTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAA
* * *
62870655 GGTGGCCTTTACATAGTACCACACTTGTGTCTAAAGCTACTTTT-TTCACAGA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTA-TTTTATTCACA-A
* *
62870707 A-TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCCCAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
* * *
62870757 AGTAGCCTTCATATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
* *
62870808 ACTGGCCTTCACATAGTACCACACTTGTGTCCAAAGTTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
62870855 CTAAGGTTCA
Statistics
Matches: 178, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
50 6 0.03
51 167 0.94
52 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
Found at i:62870910 original size:28 final size:28
Alignment explanation
Indices: 62870878--62870972 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
62870868 GGGAAATTTC
*
62870878 TCACTTTGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
62870906 TCACTTAG----ATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* *
62870930 TCACTTAGCACATTGACATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
62870958 TCACTTAGCGCAATG
1 TCACTTAGCACAATG
62870973 TCATATCTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
24 24 0.41
28 34 0.59
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:62870922 original size:24 final size:25
Alignment explanation
Indices: 62870890--62870966 Score: 111
Period size: 24 Copynumber: 3.0 Consensus size: 25
62870880 ACTTTGCACA
62870890 ATGCCATGGACTTATTTCACTTAG-
1 ATGCCATGGACTTATTTCACTTAGC
62870914 ATGCCATGGACTTATTTCACTTAGCAC
1 ATGCCATGGACTTATTTCACTTAG--C
*
62870941 ATTGACATGGACTTATTTCACTTAGC
1 A-TGCCATGGACTTATTTCACTTAGC
62870967 GCAATGTCAT
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
24 24 0.50
26 1 0.02
27 1 0.02
28 22 0.46
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (25 bp):
ATGCCATGGACTTATTTCACTTAGC
Found at i:62877472 original size:51 final size:51
Alignment explanation
Indices: 62877394--62877641 Score: 351
Period size: 51 Copynumber: 4.9 Consensus size: 51
62877384 ACGGATACAC
*
62877394 AGTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAA
* *
62877445 AGTGGCCTTCACATAGTACCAAACTTGTGTGCAAAGCTATTTTATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
* * *
62877496 AGTGGCTTTCACATAGTACCACACTTGTGTCTAAAGCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
* * * *
62877547 AGTGG-C--CATATAGTACCACAATTGTGTCCAAACCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
* *
62877595 ACTGGCCTTCACATAGTAACACACTTGTGTCCAAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
62877642 CTAAGCTTCA
Statistics
Matches: 174, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
48 42 0.24
49 1 0.01
50 1 0.01
51 130 0.75
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
Found at i:62877618 original size:99 final size:101
Alignment explanation
Indices: 62877396--62877641 Score: 347
Period size: 99 Copynumber: 2.4 Consensus size: 101
62877386 GGATACACAG
*
62877396 TGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAAGTGGCCTTCACATA
1 TGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAGTGGCC-TCACATA
* * * *
62877460 GTACCAAACTTGTGTGCAAAGCTATTTTATTCACAAAG
64 GTACCAAACTTGTGTCCAAACCTATTATATTCACAAAC
* * * *
62877498 TGGCTTTCACATAGTACCACACTTGTGTCTAAAGCTATTATATTCACAAAGTGG-C-CATATAGT
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTCACATAGT
62877561 ACCACAA-TTGTGTCCAAACCTATTATATTCACAAAC
66 ACCA-AACTTGTGTCCAAACCTATTATATTCACAAAC
*
62877597 TGGCCTTCACATAGTAACACACTTGTGTCCAAAGCTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
62877642 CTAAGCTTCA
Statistics
Matches: 129, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
99 77 0.60
100 2 0.02
101 2 0.02
102 48 0.37
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (101 bp):
TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTCACATAGT
ACCAAACTTGTGTCCAAACCTATTATATTCACAAAC
Found at i:62877697 original size:28 final size:26
Alignment explanation
Indices: 62877665--62877778 Score: 94
Period size: 24 Copynumber: 4.4 Consensus size: 26
62877655 GGAAAATTTC
62877665 TCACTTAGCACAATACCATGGACTTATT
1 TCACTTAG--CAATACCATGGACTTATT
**
62877693 TCACTTAG--ATGTCATGGACTTATT
1 TCACTTAGCAATACCATGGACTTATT
*
62877717 TCACTTAGCATGTTGA-CATGGACTTATT
1 TCACTTAGCA--AT-ACCATGGACTTATT
* * *
62877745 TCGCTTAG--ATGCCATGGTCTTATT
1 TCACTTAGCAATACCATGGACTTATT
62877769 TCACTTAGCA
1 TCACTTAGCA
62877779 CAATGTCATA
Statistics
Matches: 69, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
24 41 0.59
28 28 0.41
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (26 bp):
TCACTTAGCAATACCATGGACTTATT
Found at i:62877713 original size:24 final size:24
Alignment explanation
Indices: 62877681--62877776 Score: 129
Period size: 24 Copynumber: 3.8 Consensus size: 24
62877671 AGCACAATAC
62877681 CATGGACTTATTTCACTTAGATGT
1 CATGGACTTATTTCACTTAGATGT
62877705 CATGGACTTATTTCACTTAGCATGTT
1 CATGGACTTATTTCACTTAG-ATG-T
* *
62877731 GACATGGACTTATTTCGCTTAGATGC
1 --CATGGACTTATTTCACTTAGATGT
*
62877757 CATGGTCTTATTTCACTTAG
1 CATGGACTTATTTCACTTAG
62877777 CACAATGTCA
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
24 38 0.59
25 3 0.05
26 1 0.02
27 3 0.05
28 19 0.30
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.41
Consensus pattern (24 bp):
CATGGACTTATTTCACTTAGATGT
Found at i:62877721 original size:52 final size:52
Alignment explanation
Indices: 62877665--62877783 Score: 168
Period size: 52 Copynumber: 2.3 Consensus size: 52
62877655 GGAAAATTTC
*
62877665 TCACTTAGCACAAT-ACCATGGACTTATTTCACTTAGATGTCATGGACTTATT
1 TCACTTAGCACAATGA-CATGGACTTATTTCACTTAGATGCCATGGACTTATT
*** * *
62877717 TCACTTAGCATGTTGACATGGACTTATTTCGCTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGACATGGACTTATTTCACTTAGATGCCATGGACTTATT
62877769 TCACTTAGCACAATG
1 TCACTTAGCACAATG
62877784 TCATATCCTA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
52 56 0.98
53 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (52 bp):
TCACTTAGCACAATGACATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:62879142 original size:18 final size:17
Alignment explanation
Indices: 62879112--62879153 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
62879102 TTACATTTCT
62879112 CACATGAAAATCCATTAA
1 CACAT-AAAATCCATTAA
62879130 CACATAAACATCCATTAA
1 CACATAAA-ATCCATTAA
62879148 -ACATAA
1 CACATAA
62879154 TCACATTGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.52, C:0.24, G:0.02, T:0.21
Consensus pattern (17 bp):
CACATAAAATCCATTAA
Found at i:62880574 original size:47 final size:47
Alignment explanation
Indices: 62880521--62880649 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 47
62880511 CAATCAATAC
*
62880521 GTACCTATACCATGGCCC-TAAGCCAAATCAAGGTAACTTATCCCGGA
1 GTACCTATACCATGGCCCGT-AGCCAAATCAAGGTAACTCATCCCGGA
* * * * *
62880568 GTACCTATACCATGGCCCGTAGCCAAATCGATGTAACTCCTCTCTGA
1 GTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCGGA
* *
62880615 ATACCTATGCCATGGCCCGTAGCCAAATCAAGGTA
1 GTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
62880650 TCACTCGCAA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 70 0.99
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (47 bp):
GTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCGGA
Found at i:62884141 original size:28 final size:28
Alignment explanation
Indices: 62884080--62884177 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62884070 TCACAAATTG
** * *
62884080 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62884109 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62884137 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62884165 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62884178 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62891818 original size:28 final size:28
Alignment explanation
Indices: 62891757--62891854 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62891747 TCACAAATTG
** * *
62891757 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62891786 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62891814 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62891842 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62891855 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62895290 original size:14 final size:15
Alignment explanation
Indices: 62895273--62895301 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62895263 TCACGAAAAT
62895273 TTCACACAT-ATAAA
1 TTCACACATAATAAA
62895287 TTCACACATAATAAA
1 TTCACACATAATAAA
62895302 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:62897174 original size:13 final size:13
Alignment explanation
Indices: 62897156--62897183 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
62897146 AATACCTTAC
62897156 AAAATTAAATTTA
1 AAAATTAAATTTA
62897169 AAAATTAAATTTA
1 AAAATTAAATTTA
62897182 AA
1 AA
62897184 TTAAATCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATTAAATTTA
Found at i:62897361 original size:3 final size:3
Alignment explanation
Indices: 62897341--62897406 Score: 64
Period size: 3 Copynumber: 22.3 Consensus size: 3
62897331 CCTTTCTCGC
* * * *
62897341 CTT CTC CTT CTC CTT CTT CTT CTT CTT CTA CTT CTT CTT -TT CTT CTC
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
62897388 CTT C-T CTTT CTT CTC CTT C
1 CTT CTT C-TT CTT CTT CTT C
62897407 ACTTACCTTC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
2 4 0.08
3 44 0.88
4 2 0.04
ACGTcount: A:0.02, C:0.39, G:0.00, T:0.59
Consensus pattern (3 bp):
CTT
Found at i:62898889 original size:11 final size:11
Alignment explanation
Indices: 62898873--62898921 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
62898863 GTATTGTGTA
*
62898873 ATTTTTATTTT
1 ATTTTTAATTT
62898884 ATTTTT-ATGTT
1 ATTTTTAAT-TT
*
62898895 ACTTTTAATTT
1 ATTTTTAATTT
*
62898906 ATTTTAAATTT
1 ATTTTTAATTT
62898917 ATTTT
1 ATTTT
62898922 GTTAGTTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 1 0.03
11 29 0.91
12 2 0.06
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (11 bp):
ATTTTTAATTT
Found at i:62898951 original size:25 final size:26
Alignment explanation
Indices: 62898905--62898953 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
62898895 ACTTTTAATT
*
62898905 TATTTTAAATTTATTTTGTTAGTTAC
1 TATTATAAATTTATTTTGTTAGTTAC
62898931 TATTATAAA-TTA-TTTGTTTAGTT
1 TATTATAAATTTATTTTG-TTAGTT
62898954 TAATGTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 9 0.43
26 8 0.38
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.61
Consensus pattern (26 bp):
TATTATAAATTTATTTTGTTAGTTAC
Found at i:62901276 original size:48 final size:48
Alignment explanation
Indices: 62901200--62901295 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
62901190 TTATGCGGGA
*
62901200 GTACGTGCCGGATGCTATCATGGAGTTGAAGACATGACTTTATTACGG
1 GTACATGCCGGATGCTATCATGGAGTTGAAGACATGACTTTATTACGG
62901248 GTACATGCCGGATGCTATCATGGAGTTGAAGACATGACTTTATTACGG
1 GTACATGCCGGATGCTATCATGGAGTTGAAGACATGACTTTATTACGG
62901296 CCTAGATGAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
GTACATGCCGGATGCTATCATGGAGTTGAAGACATGACTTTATTACGG
Found at i:62902772 original size:48 final size:48
Alignment explanation
Indices: 62902673--62902781 Score: 130
Period size: 48 Copynumber: 2.3 Consensus size: 48
62902663 ACTCCAATGT
* ** **
62902673 ATCTAATTTATATTACAAAGTTTGTTCCTTGTTTTAATATTGCAATTA
1 ATCTAATTTAAATTACAAAGTTTGTTCCAAGTTTTAATATTGCAACGA
* * *
62902721 ATCTAATTTAAATTACGAAGTTTGTTCCAAGTTTTAATGTTGTAACGA
1 ATCTAATTTAAATTACAAAGTTTGTTCCAAGTTTTAATATTGCAACGA
62902769 ATCTTAA-TTAAAT
1 ATC-TAATTTAAAT
62902782 AAATACAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 49 0.94
49 3 0.06
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (48 bp):
ATCTAATTTAAATTACAAAGTTTGTTCCAAGTTTTAATATTGCAACGA
Found at i:62903981 original size:32 final size:32
Alignment explanation
Indices: 62903940--62904004 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
62903930 TTTCAAAACA
62903940 TTCATTCACTTATACATAGTCCCTTATTTGAG
1 TTCATTCACTTATACATAGTCCCTTATTTGAG
62903972 TTCATTCACTTATACATAGTCCCTTATTTGAG
1 TTCATTCACTTATACATAGTCCCTTATTTGAG
62904004 T
1 T
62904005 CTACGGAGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.22, G:0.09, T:0.45
Consensus pattern (32 bp):
TTCATTCACTTATACATAGTCCCTTATTTGAG
Found at i:62904540 original size:2 final size:2
Alignment explanation
Indices: 62904533--62904568 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
62904523 GAGACTAGTC
62904533 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62904569 GTCATGATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62905840 original size:64 final size:64
Alignment explanation
Indices: 62905652--62905897 Score: 309
Period size: 64 Copynumber: 3.8 Consensus size: 64
62905642 ATAGTTCGGA
* * * * *
62905652 TCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAG
1 TCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATCCCGTAG
62905714 C
64 C
* * * * *
62905715 TCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCGTA
1 TCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
62905780 GC
63 GC
* *
62905782 TCTCTTGTCTACATGGTGTACAAATAGTATCACCCATGCGACCTAGCTACATATATCCCGTAGC
1 TCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTAGC
*
62905846 TCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 TCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT
62905898 CATAATGTCT
Statistics
Matches: 160, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
62 1 0.01
63 16 0.10
64 90 0.56
66 22 0.14
67 29 0.18
68 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (64 bp):
TCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTAGC
Found at i:62905959 original size:132 final size:128
Alignment explanation
Indices: 62905652--62905966 Score: 332
Period size: 132 Copynumber: 2.4 Consensus size: 128
62905642 ATAGTTCGGA
* * *
62905652 TCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGC
1 TCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGTGACCTAGCTACA-TATATCCCGTAGC
* * * *
62905715 TCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCGTA
64 TCTCTTGTCTACATGGTG--CTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
62905780 GC
127 GC
* * *
62905782 TCTCTTGT-CTACATGGTGTACAAATAGTATCACCCATGCGACCTAGCTACATATATCCCGTAGC
1 TCTCTTGTAC-ACATGGTGTAC-ACTAGTACCACCCATGTGACCTAGCTACATATATCCCGTAGC
* * **
62905846 TCTCTTGTCTACATGGTG-TACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTG
64 TCTCTTGTCTACATGGTGCTACACATAGAACCACCCATGCGACCTAGCTACAT-AT-A--TCCCG
62905910 TAGC
125 TAGC
* * * **
62905914 TCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 TCTCTTGTACACATGGTGTACACT-AGTACCACCCATGTGACCTAGCTACATA
62905967 CCATCTGTAT
Statistics
Matches: 153, Mismatches: 22, Indels: 18
0.79 0.11 0.09
Matches are distributed among these distances:
128 28 0.18
129 3 0.02
130 40 0.26
131 32 0.21
132 49 0.32
133 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (128 bp):
TCTCTTGTACACATGGTGTACACTAGTACCACCCATGTGACCTAGCTACATATATCCCGTAGCTC
TCTTGTCTACATGGTGCTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTAGC
Found at i:62906666 original size:30 final size:30
Alignment explanation
Indices: 62906632--62906692 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62906622 TCCTTAACTC
62906632 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
62906662 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
62906692 A
1 A
62906693 GGCTCTGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:62912739 original size:40 final size:40
Alignment explanation
Indices: 62912575--62912741 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
62912565 AAATTGAATG
* *
62912575 ATATCCGGGCTAA-ATCCCGAAGACAATTTGCTG-GAA--ATT
1 ATATCCGGGCTAAGA-CCCGAAGGC-ATTTG-TGCGAATGGTT
* * * * *
62912614 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTT
* * **
62912654 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTT
*
62912694 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTT
62912734 ATATCCGG
1 ATATCCGG
62912742 TTATATTCCG
Statistics
Matches: 99, Mismatches: 23, Indels: 11
0.74 0.17 0.08
Matches are distributed among these distances:
37 2 0.02
38 5 0.05
39 22 0.22
40 70 0.71
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTT
Found at i:62916068 original size:40 final size:40
Alignment explanation
Indices: 62916002--62916157 Score: 156
Period size: 40 Copynumber: 3.9 Consensus size: 40
62915992 AAATTGAATG
* * *
62916002 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
62916041 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62916081 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
62916121 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCATGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-TGGT
62916158 TATATCCGGT
Statistics
Matches: 94, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 16 0.17
40 73 0.78
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62920482 original size:27 final size:27
Alignment explanation
Indices: 62920452--62920505 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
62920442 ACCCAAATTT
*
62920452 GGTAAAATGACT-ATTATACCCCTATGA
1 GGTAAAATAACTGA-TATACCCCTATGA
62920479 GGTAAAATAACTGATATACCCCTATGA
1 GGTAAAATAACTGATATACCCCTATGA
62920506 TATGTATACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.28
Consensus pattern (27 bp):
GGTAAAATAACTGATATACCCCTATGA
Found at i:62930963 original size:30 final size:30
Alignment explanation
Indices: 62930929--62930989 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
62930919 ATTCTATTGT
62930929 TAGAAATGAATTATTGTTGGAATTATAATA
1 TAGAAATGAATTATTGTTGGAATTATAATA
62930959 TAGAAATGAATTATTGTTGGAATTATAATA
1 TAGAAATGAATTATTGTTGGAATTATAATA
62930989 T
1 T
62930990 TGAATTAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (30 bp):
TAGAAATGAATTATTGTTGGAATTATAATA
Found at i:62933883 original size:20 final size:20
Alignment explanation
Indices: 62933848--62933889 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
62933838 TTTATTGAGA
* *
62933848 AATATTTTTTAAATATTTTT
1 AATATTTTTGAAATATTATT
*
62933868 AATATTTTTGATATATTATT
1 AATATTTTTGAAATATTATT
62933888 AA
1 AA
62933890 AAAATTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
AATATTTTTGAAATATTATT
Found at i:62935105 original size:28 final size:29
Alignment explanation
Indices: 62935051--62935116 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 29
62935041 AACATAAATA
62935051 TAATATT--AATATTTTTAGTTATCA-TT
1 TAATATTAAAATATTTTTAGTTATCATTT
*
62935077 TAATATTAAAATATTTTTATTTTAT-ATTT
1 TAATATTAAAATATTTTTA-GTTATCATTT
62935106 TAATTATTAAA
1 TAA-TATTAAA
62935117 TATAAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
26 7 0.21
28 11 0.32
29 9 0.26
30 7 0.21
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (29 bp):
TAATATTAAAATATTTTTAGTTATCATTT
Found at i:62935117 original size:29 final size:27
Alignment explanation
Indices: 62935051--62935119 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 27
62935041 AACATAAATA
62935051 TAATATT-AATATTTTTAGTTATCATT
1 TAATATTAAATATTTTTAGTTATCATT
*
62935077 TAATATTAAAATATTTTTATTTTAT-ATTT
1 TAATATT-AAATATTTTTA-GTTATCA-TT
62935106 TAATTATTAAATAT
1 TAA-TATTAAATAT
62935120 AAATATATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
26 7 0.19
28 11 0.30
29 15 0.41
30 4 0.11
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (27 bp):
TAATATTAAATATTTTTAGTTATCATT
Found at i:62935631 original size:26 final size:26
Alignment explanation
Indices: 62935595--62935730 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
62935585 TGATACAAAT
*
62935595 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
62935621 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
62935647 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
62935673 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
62935699 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
62935725 TGATAA
1 TGATAA
62935731 GAATTTCATG
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:62937393 original size:27 final size:27
Alignment explanation
Indices: 62937350--62937462 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
62937340 GAGGAAGCGT
*
62937350 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
62937377 TCTGGTGGCTCTACCACATATATCT-A
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
62937403 TTCTGGTGGCTCTGCCACGATTATCTGTA
1 -TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
62937432 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
62937458 TCTGG
1 TCTGG
62937463 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 15 0.21
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:62937455 original size:54 final size:54
Alignment explanation
Indices: 62937349--62937462 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
62937339 GGAGGAAGCG
*
62937349 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTACCACATATATCTA
1 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCTA
* * * ** *
62937403 TTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTG
1 TTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTACCACATATATCTA
62937457 TTCTGG
1 TTCTGG
62937463 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCTA
Found at i:62950228 original size:31 final size:31
Alignment explanation
Indices: 62950176--62950254 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 31
62950166 ATCTACCGAT
*
62950176 TATTATAAAAA-AATATGAAAAATATTAATTAA
1 TATTATAAAAATAA-ATGAAAAA-ATTAAATAA
62950208 -ATTATAAAAATTAAAT-AAAAAATTAAATAA
1 TATTATAAAAA-TAAATGAAAAAATTAAATAA
*
62950238 TATTAAAAAAATGAAAT
1 TATTATAAAAAT-AAAT
62950255 TAACCCTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
30 9 0.22
31 28 0.68
32 2 0.05
33 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
TATTATAAAAATAAATGAAAAAATTAAATAA
Found at i:62950230 original size:12 final size:12
Alignment explanation
Indices: 62950202--62950237 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 12
62950192 GAAAAATATT
62950202 AATTAAATTATAAA
1 AATTAAA-TA-AAA
62950216 AATTAAATAAAA
1 AATTAAATAAAA
62950228 AATTAAATAA
1 AATTAAATAA
62950238 TATTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 13 0.59
13 2 0.09
14 7 0.32
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AATTAAATAAAA
Found at i:62950652 original size:20 final size:20
Alignment explanation
Indices: 62950627--62950668 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
62950617 GTGCTTTTTC
62950627 CTGACACAAGGAGAAAAGCA
1 CTGACACAAGGAGAAAAGCA
*
62950647 CTGACATAAGGAGAAAAGCA
1 CTGACACAAGGAGAAAAGCA
62950667 CT
1 CT
62950669 AACCTGGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.24, T:0.10
Consensus pattern (20 bp):
CTGACACAAGGAGAAAAGCA
Found at i:62954624 original size:40 final size:40
Alignment explanation
Indices: 62954538--62954675 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
62954528 GGACTAAGAT
* * *
62954538 CCGAAGGCGTTCGTGCGAGTTAATAAA-TCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
62954576 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
62954616 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
62954656 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
62954676 CGTTATATCC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
38 24 0.27
39 9 0.10
40 46 0.52
41 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:62962695 original size:40 final size:39
Alignment explanation
Indices: 62962571--62962708 Score: 165
Period size: 39 Copynumber: 3.5 Consensus size: 39
62962561 GGACTAAGAT
* *
62962571 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
62962610 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGT-
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
62962649 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACC-GGGTTAAGTC
* *
62962689 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
62962709 CGTTATATCC
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
39 62 0.71
40 25 0.29
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:62968535 original size:29 final size:29
Alignment explanation
Indices: 62968502--62968575 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
62968492 CCTTCGAGCT
62968502 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
62968531 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62968560 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62968576 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62968536 original size:58 final size:58
Alignment explanation
Indices: 62968443--62968575 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
62968433 ATACTCGATT
* * * * *
62968443 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
62968501 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
62968559 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
62968576 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:62976414 original size:29 final size:29
Alignment explanation
Indices: 62976381--62976454 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
62976371 CCTTCGAGCT
62976381 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
62976410 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62976439 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62976455 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62976415 original size:58 final size:58
Alignment explanation
Indices: 62976322--62976454 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
62976312 ATACTCGATT
* * * * *
62976322 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
62976380 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
62976438 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
62976455 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:62980195 original size:29 final size:29
Alignment explanation
Indices: 62980136--62980238 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
62980126 GTGACGAGAT
* * *
62980136 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
62980165 TGGCACTAAGTGTGTGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * * *
62980194 TGCCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
62980223 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62980239 TGATTGAGTA
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 3 0.05
29 55 0.95
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:62989971 original size:13 final size:13
Alignment explanation
Indices: 62989953--62989980 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
62989943 AGTTTTTAAG
62989953 TATGCCAAATACT
1 TATGCCAAATACT
62989966 TATGCCAAATACT
1 TATGCCAAATACT
62989979 TA
1 TA
62989981 AAAGATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.32
Consensus pattern (13 bp):
TATGCCAAATACT
Found at i:62990067 original size:13 final size:13
Alignment explanation
Indices: 62990049--62990074 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62990039 CATCATGTAG
62990049 TGTGATTATTTCA
1 TGTGATTATTTCA
62990062 TGTGATTATTTCA
1 TGTGATTATTTCA
62990075 AAACATATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
TGTGATTATTTCA
Found at i:62994919 original size:42 final size:42
Alignment explanation
Indices: 62994830--62994984 Score: 181
Period size: 42 Copynumber: 3.7 Consensus size: 42
62994820 ATGAATTAGT
* *
62994830 TATATGTGGCACTTAGTGTGCGAGA-TCAAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGATTCGAGATAGCTTCGGC
* *
62994871 TATATATGGCACTTAGTGTGCGAGATTCGACATAGCTTCAGC
1 TATATATGGCACTTAGTGTGCGAGATTCGAGATAGCTTCGGC
* * * *
62994913 TGTATATGGCACTTAATGT--GTGATTTGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGATTCGAGATAGCTTCGGC
* * *
62994953 TATGTATGACACTTAGTGTGCAAGATATCGAG
1 TATATATGGCACTTAGTGTGCGAGAT-TCGAG
62994985 TATGGCACTT
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
40 32 0.34
41 24 0.26
42 33 0.35
43 4 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
TATATATGGCACTTAGTGTGCGAGATTCGAGATAGCTTCGGC
Found at i:62994966 original size:40 final size:40
Alignment explanation
Indices: 62994830--62994972 Score: 153
Period size: 40 Copynumber: 3.5 Consensus size: 40
62994820 ATGAATTAGT
* *
62994830 TATATGTGGCACTTAGTGTGCGAGA-TCAAGATAGCTTCGGC
1 TATATATGGCACTTAGTGT--GAGATTCGAGATAGCTTCGGC
* *
62994871 TATATATGGCACTTAGTGTGCGAGATTCGACATAGCTTCAGC
1 TATATATGGCACTTAGTGT--GAGATTCGAGATAGCTTCGGC
* * * *
62994913 TGTATATGGCACTTAATGTGTGATTTGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGAGATTCGAGATAGCTTCGGC
* *
62994953 TATGTATGACACTTAGTGTG
1 TATATATGGCACTTAGTGTG
62994973 CAAGATATCG
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 33 0.38
41 24 0.28
42 30 0.34
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGAGATTCGAGATAGCTTCGGC
Found at i:62994996 original size:28 final size:28
Alignment explanation
Indices: 62994956--62995015 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
62994946 CTTCGGCTAT
*
62994956 GTATGACACTTAGTGTGCAAGATATCGA
1 GTATGACACTTAGTGTGCAAGACATCGA
* * *
62994984 GTATGGCACTTAGTGTGCGAGACATTGA
1 GTATGACACTTAGTGTGCAAGACATCGA
62995012 GTAT
1 GTAT
62995016 TCAACGACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
GTATGACACTTAGTGTGCAAGACATCGA
Found at i:63002457 original size:40 final size:40
Alignment explanation
Indices: 63002324--63002471 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 40
63002314 TGGTGATGAA
* * * *
63002324 TCATCTTTATATGGCACTTAGCGTGCGAGATCGAGATAGCT
1 TCATCTATATATGGCACTTAGTGTGCGA-TTTGAGATAGCT
* * *
63002365 TCGA-CTATATATGGCACTTTGGTGTACGATATTCGACATAGCT
1 TC-ATCTATATATGGCAC-TTAGTGTGCGAT-TT-GAGATAGCT
**
63002408 TCGGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 TCATCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
* *
63002448 TCATCTATATACGACACTTAGTGT
1 TCATCTATATATGGCACTTAGTGT
63002472 ACGAGATATC
Statistics
Matches: 87, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
40 28 0.32
41 16 0.18
42 20 0.23
43 23 0.26
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.34
Consensus pattern (40 bp):
TCATCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
Found at i:63002504 original size:28 final size:28
Alignment explanation
Indices: 63002462--63002515 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
63002452 CTATATACGA
* *
63002462 CACTTAGTGTACGAGATATCGAGTATGG
1 CACTTAGTATACGAGACATCGAGTATGG
* *
63002490 CACTTAGTATGCGAGACATTGAGTAT
1 CACTTAGTATACGAGACATCGAGTAT
63002516 TCAACTGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (28 bp):
CACTTAGTATACGAGACATCGAGTATGG
Found at i:63008939 original size:20 final size:20
Alignment explanation
Indices: 63008913--63008973 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
63008903 AGGATTCAGT
63008913 TTTTTCTTCTTCTTTTCCT-
1 TTTTTCTTCTTCTTTTCCTA
*
63008932 TCTTTTCTT-TTCTCTTCATCTA
1 T-TTTTCTTCTTCTTTTC--CTA
63008954 TTTTCTCTTCTTCTTTTCCT
1 TTTT-TCTTCTTCTTTTCCT
63008974 CCATAGCTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
19 8 0.24
20 7 0.21
21 7 0.21
22 5 0.15
23 7 0.21
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTCTTCTTCTTTTCCTA
Found at i:63008948 original size:15 final size:15
Alignment explanation
Indices: 63008916--63008965 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
63008906 ATTCAGTTTT
63008916 TTCTTCTTCTTTTC-C
1 TTCTT-TTCTTTTCTC
63008931 TTCTTTTCTTTTCTC
1 TTCTTTTCTTTTCTC
* * *
63008946 TTCATCTATTTTCTC
1 TTCTTTTCTTTTCTC
63008961 TTCTT
1 TTCTT
63008966 CTTTTCCTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.68
Consensus pattern (15 bp):
TTCTTTTCTTTTCTC
Found at i:63010474 original size:38 final size:38
Alignment explanation
Indices: 63010423--63010508 Score: 163
Period size: 38 Copynumber: 2.3 Consensus size: 38
63010413 GCTACAACTG
63010423 TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
1 TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
*
63010461 TGGAGTGTAGGGCTGGGTGGGTTTAGCTATTCTCCACA
1 TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
63010499 TGGAGTGTAG
1 TGGAGTGTAG
63010509 CAGTTGGTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.16, C:0.14, G:0.40, T:0.30
Consensus pattern (38 bp):
TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
Found at i:63013419 original size:19 final size:19
Alignment explanation
Indices: 63013395--63013435 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
63013385 TAGGATTCAG
63013395 TTTTTTCTTCTTCTTTTCCT
1 TTTTTTCTTCTTCTTTT-CT
63013415 TTTTTTCTT-TTCTTTTCT
1 TTTTTTCTTCTTCTTTTCT
63013433 TTT
1 TTT
63013436 CTCTTCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 7 0.33
20 9 0.43
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTCTTCTTCTTTTCT
Found at i:63013427 original size:5 final size:5
Alignment explanation
Indices: 63013397--63013437 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
63013387 GGATTCAGTT
*
63013397 TTTTC TTCTTC TTTTC CTTT- TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
63013438 CTTCATCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 3 0.09
5 24 0.75
6 5 0.16
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:63017621 original size:40 final size:39
Alignment explanation
Indices: 63017541--63017681 Score: 144
Period size: 40 Copynumber: 3.6 Consensus size: 39
63017531 AATGATGTCT
* * * * *
63017541 GGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATATCC
1 GGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCC
*
63017581 GGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
63017621 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA--C
1 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
63017660 GGGCTATGTCCGAAGGCATTTG
1 GGGCTAAGTCCGAAGGCATTTG
63017682 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
38 13 0.15
39 9 0.10
40 56 0.64
41 9 0.10
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:63023845 original size:21 final size:21
Alignment explanation
Indices: 63023819--63023860 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
63023809 GGGGGAGAGT
*
63023819 TGTGACAGCCCTAAATTGACC
1 TGTGACACCCCTAAATTGACC
*
63023840 TGTGACACCCCTAATTTGACC
1 TGTGACACCCCTAAATTGACC
63023861 CTAGTTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (21 bp):
TGTGACACCCCTAAATTGACC
Found at i:63026065 original size:46 final size:46
Alignment explanation
Indices: 63026014--63026195 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
63026004 AGTTAAATAT
63026014 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
63026060 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
63026106 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
63026152 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
63026196 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:63026253 original size:47 final size:47
Alignment explanation
Indices: 63026199--63026309 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
63026189 ATGTATGAGA
* * *
63026199 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
63026246 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
63026293 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
63026310 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:63028920 original size:40 final size:40
Alignment explanation
Indices: 63028865--63029128 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
63028855 CTCGACGATG
*
63028865 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
*
63028905 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
63028945 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* **
63028985 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
63029025 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
63029065 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
63029105 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
63029129 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:63029856 original size:40 final size:40
Alignment explanation
Indices: 63029792--63029892 Score: 107
Period size: 40 Copynumber: 2.5 Consensus size: 40
63029782 AATGGTATCT
* ** * *
63029792 GGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACTA-AATCC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA-CC
*
63029832 GGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC
*
63029872 GGGCT-ATGTCCCGAAGACAAT
1 GGGCTAAT-TCCCGAAGGCAAT
63029893 CGAGTGAGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.04
40 48 0.92
41 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC
Found at i:63029908 original size:40 final size:40
Alignment explanation
Indices: 63029830--63029926 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 40
63029820 GTTACTAAAT
* * *
63029830 CCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
* * *
63029870 CCGGGCT-ATGTCCCGAAGACAATCGAGTGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGTGAATCACTATAA
* *
63029910 CC-GGTTAAATCCCGAAG
1 CCGGGCTAATTCCCGAAG
63029927 GTACGTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
Found at i:63032644 original size:46 final size:46
Alignment explanation
Indices: 63032593--63032774 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
63032583 AGTTAAATAT
63032593 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
63032639 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
63032685 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
63032731 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
63032775 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:63032832 original size:47 final size:47
Alignment explanation
Indices: 63032778--63032888 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
63032768 ATGTATGAGA
* * *
63032778 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
63032825 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
63032872 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
63032889 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:63036707 original size:40 final size:40
Alignment explanation
Indices: 63036518--63036700 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
63036508 AATGATGTCT
* * * * *
63036518 GGGCTGAGTCCCGAAGGC-TTTATGCTAAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* *
63036558 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATTC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
63036598 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
63036638 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
63036678 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
63036701 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:63036707 original size:80 final size:79
Alignment explanation
Indices: 63036568--63036733 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
63036558 GGACTAAGAT
* **
63036568 CCGAAGGCATTTGTGCGAGTTACTAAATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
63036632 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
63036648 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
63036711 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
63036727 CCGAAGG
1 CCGAAGG
63036734 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 17 0.23
80 56 0.75
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:63042029 original size:19 final size:19
Alignment explanation
Indices: 63041993--63042046 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
63041983 ATCTAAATTT
* *
63041993 TTTTATTTTTCACT-TTAA
1 TTTTATTTTTTAATGTTAA
63042011 -TTTATGTTTTTAATGTTAA
1 TTTTAT-TTTTTAATGTTAA
*
63042030 TTTTATTTTTTTATGTT
1 TTTTATTTTTTAATGTT
63042047 TAATAAGGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 5 0.17
18 6 0.20
19 14 0.47
20 5 0.17
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.70
Consensus pattern (19 bp):
TTTTATTTTTTAATGTTAA
Found at i:63042049 original size:20 final size:21
Alignment explanation
Indices: 63042006--63042050 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
63041996 TATTTTTCAC
63042006 TTTAA-TTTATGTTTTTAATG
1 TTTAATTTTATGTTTTTAATG
*
63042026 -TTAATTTTAT-TTTTTTATG
1 TTTAATTTTATGTTTTTAATG
63042045 TTTAAT
1 TTTAAT
63042051 AAGGGGGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (21 bp):
TTTAATTTTATGTTTTTAATG
Found at i:63049432 original size:51 final size:49
Alignment explanation
Indices: 63049354--63049494 Score: 192
Period size: 49 Copynumber: 2.8 Consensus size: 49
63049344 TATGAGGTCG
*
63049354 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GATCA
* * * * * *
63049405 CGTGTGTAGTGCTAAGTCCAGGCTACTATGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGATCA
*
63049454 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
63049495 GCTTTGGCTA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 39 0.49
50 2 0.03
51 38 0.48
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGATCA
Found at i:63049479 original size:49 final size:51
Alignment explanation
Indices: 63049349--63049494 Score: 206
Period size: 51 Copynumber: 2.9 Consensus size: 51
63049339 TCTATTATGA
*
63049349 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
* * * * * *
63049400 GATCACGTGTGTAGTGCTAAGTCCAGGCTACTATGTGTACCGGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
*
63049449 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
63049495 GCTTTGGCTA
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 39 0.48
50 2 0.02
51 41 0.50
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
Found at i:63051836 original size:57 final size:58
Alignment explanation
Indices: 63051742--63051881 Score: 160
Period size: 57 Copynumber: 2.4 Consensus size: 58
63051732 TGTATACAAC
* * ** * *
63051742 AGGATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTA-AGGAGCTTGAT-CT
1 AGGATTACCCGTCCAGGCTAAATCCATTCCATAACATATGCTCGAGAGGA-CTT-ATACT
* *
63051800 -GGATTACCCGTCCGGGCTAAATCCATTCCATAACATATGCTCGAGAGGACTTATATT
1 AGGATTACCCGTCCAGGCTAAATCCATTCCATAACATATGCTCGAGAGGACTTATACT
*
63051857 AGGATTACCCATCCAGGCTAAATCC
1 AGGATTACCCGTCCAGGCTAAATCC
63051882 TTTCTGTAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
56 2 0.03
57 41 0.59
58 26 0.38
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (58 bp):
AGGATTACCCGTCCAGGCTAAATCCATTCCATAACATATGCTCGAGAGGACTTATACT
Found at i:63054990 original size:12 final size:13
Alignment explanation
Indices: 63054962--63054994 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
63054952 TTATTTCTTT
63054962 TTCTCCATCTACC
1 TTCTCCATCTACC
*
63054975 TTCTCC-TCTTCC
1 TTCTCCATCTACC
63054987 TTCTCCAT
1 TTCTCCAT
63054995 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:63056117 original size:27 final size:28
Alignment explanation
Indices: 63056061--63056124 Score: 94
Period size: 27 Copynumber: 2.3 Consensus size: 28
63056051 ATTTACTAGA
*
63056061 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
63056089 ATACCCCTATGTGTGC-AAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
63056116 ATACCCCTA
1 ATACCCCTA
63056125 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 18 0.55
28 15 0.45
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:63056269 original size:28 final size:27
Alignment explanation
Indices: 63056227--63056327 Score: 123
Period size: 28 Copynumber: 3.7 Consensus size: 27
63056217 GGAGGAAGCG
*
63056227 TCTGGTGGCTATGCCACAAATTATCTGT
1 TCTGGTGGCTCTGCCACAAA-TATCTGT
*
63056255 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGT
*
63056282 TCTGGTGGCACTGCCACAAAATAT-TGT
1 TCTGGTGGCTCTGCCAC-AAATATCTGT
* *
63056309 ATCTGGTGACTCTGTCACA
1 -TCTGGTGGCTCTGCCACA
63056328 TTTTCTGTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 27 0.42
28 37 0.58
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGT
Found at i:63056286 original size:27 final size:28
Alignment explanation
Indices: 63056227--63056341 Score: 121
Period size: 28 Copynumber: 4.2 Consensus size: 28
63056217 GGAGGAAGCG
*
63056227 TCTGGTGGCTATGCCACAAATTATCTGT-
1 TCTGGTGGCTCTGCCACAAA-TATCTGTA
*
63056255 TCTGGTGGCTCTGCCACATATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
63056282 TCTGGTGGCACTGCCACAAAATAT-TGTA
1 TCTGGTGGCTCTGCCAC-AAATATCTGTA
* * * *
63056310 TCTGGTGACTCTGTCAC-ATTTTCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
63056337 TCTGG
1 TCTGG
63056342 CATCCATGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.04
27 35 0.47
28 37 0.49
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:63056314 original size:55 final size:55
Alignment explanation
Indices: 63056227--63056341 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 55
63056217 GGAGGAAGCG
* *
63056227 TCTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCTCTGCCACATATATCTGT-
1 TCTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACAT-TATCTGTA
* *
63056282 TCTGGTGGC-ACTGCCACAAAATAT-TGTATCTGGTGACTCTGTCACATTTTCTGTA
1 TCTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACTCTGCCACATTATCTGTA
63056337 TCTGG
1 TCTGG
63056342 CATCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
54 10 0.19
55 43 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (55 bp):
TCTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACATTATCTGTA
Found at i:63062257 original size:12 final size:13
Alignment explanation
Indices: 63062229--63062261 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
63062219 TTATTTCTTT
63062229 TTCTCCATCTACC
1 TTCTCCATCTACC
*
63062242 TTCTCC-TCTTCC
1 TTCTCCATCTACC
63062254 TTCTCCAT
1 TTCTCCAT
63062262 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:63064323 original size:40 final size:40
Alignment explanation
Indices: 63064223--63064400 Score: 144
Period size: 40 Copynumber: 4.5 Consensus size: 40
63064213 AAATTATAAT
* * * * **
63064223 CGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* *
63064263 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* * *
63064303 CGGGCTAAGACCCGAAGGCATTTGTGC-AATC-GTGATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT-ATATC
* * * * * * * *
63064342 CGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTACCATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* *
63064382 CGGGCTATGTCCCGAAGGC
1 CGGGCTAAGACCCGAAGGC
63064401 GTTTGAACGA
Statistics
Matches: 110, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.26
40 80 0.73
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
Found at i:63066684 original size:28 final size:28
Alignment explanation
Indices: 63066652--63066716 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
63066642 ATTTACTAGA
*
63066652 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* * *
63066680 ATACCCCTATGTGTGCCAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
63066708 ATACCCCTA
1 ATACCCCTA
63066717 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Done.