Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 211 of 770
Found at i:63066880 original size:27 final size:27
Alignment explanation
Indices: 63066822--63066911 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
63066812 AGGAAGCGTC
63066822 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
63066850 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
63066877 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
63066906 CTGGTG
1 CTGGTG
63066912 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:63066930 original size:55 final size:56
Alignment explanation
Indices: 63066822--63066936 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
63066812 AGGAAGCGTC
* *
63066822 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
63066877 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
63066933 CTGG
1 CTGG
63066937 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:63068571 original size:46 final size:47
Alignment explanation
Indices: 63068519--63068833 Score: 375
Period size: 46 Copynumber: 6.8 Consensus size: 47
63068509 TGGTTGAGCA
*
63068519 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
63068565 TGCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
63068611 ATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
63068658 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
63068704 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
63068750 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
63068798 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63068834 GCGGGTTACA
Statistics
Matches: 231, Mismatches: 20, Indels: 36
0.80 0.07 0.13
Matches are distributed among these distances:
42 4 0.02
43 8 0.03
45 6 0.03
46 135 0.58
47 57 0.25
48 7 0.03
50 8 0.03
51 6 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:63068675 original size:93 final size:93
Alignment explanation
Indices: 63068516--63068732 Score: 316
Period size: 93 Copynumber: 2.3 Consensus size: 93
63068506 GGATGGTTGA
* *
63068516 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTGCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
63068581 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63068609 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
* * *
63068674 TGAGTCCGAGTTCACTTATGGATG---CGA-
66 TGAGTCCGAGTTC-GTGA--GATGTAACTAG
*
63068701 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
63068733 GTGAGATGTA
Statistics
Matches: 113, Mismatches: 8, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
92 30 0.27
93 77 0.68
94 2 0.02
96 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63068750 original size:139 final size:139
Alignment explanation
Indices: 63068519--63068833 Score: 569
Period size: 139 Copynumber: 2.3 Consensus size: 139
63068509 TGGTTGAGCA
* *
63068519 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTGCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
*
63068584 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGG
66 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63068649 ATGCGAACG
131 ATGCGAACG
*
63068658 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
63068723 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63068788 ATGCGAACG
131 ATGCGAACG
*
63068797 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63068834 GCGGGTTACA
Statistics
Matches: 170, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
138 1 0.01
139 169 0.99
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (139 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
ATGCGAACG
Found at i:63072277 original size:39 final size:39
Alignment explanation
Indices: 63072223--63072334 Score: 179
Period size: 39 Copynumber: 2.9 Consensus size: 39
63072213 ATATATATGT
*
63072223 GAGAATTATATCCGGACTTCAGGTCCGTAGGCTATAAGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
* *
63072262 GAGAATTATATCCGGACTTCATGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
* *
63072301 GAGAATTATATCCGGACTTTAGGTCCACAGGCTA
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTA
63072335 CGTGCTGGAC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (39 bp):
GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
Found at i:63079213 original size:9 final size:9
Alignment explanation
Indices: 63079199--63079231 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
63079189 TGGATTAAAT
63079199 TGAATGAAA
1 TGAATGAAA
63079208 TGAATGAAA
1 TGAATGAAA
*
63079217 TGAAT-AAT
1 TGAATGAAA
63079225 TGAATGA
1 TGAATGA
63079232 TTGAATTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (9 bp):
TGAATGAAA
Found at i:63079657 original size:85 final size:85
Alignment explanation
Indices: 63079512--63079922 Score: 558
Period size: 85 Copynumber: 4.8 Consensus size: 85
63079502 GTCTGATGCA
* *
63079512 TCGTGTAAGACCGTGTCTGAGACACAGGCCTCGATTGAGATTTACGTATAAGACCGTGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
* *
63079577 CATTGGCATCGTATCTAATT
66 CATCGGCATCGTATCTGATT
* * * * *
63079597 TTGTGTAAGATCGTCTCTGGGACACAGACCTCGATTGAGATTTACGTATAAGACTATGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
63079662 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
*
63079682 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCAATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
*
63079747 CATCGACATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * *
63079767 TCGTGTAAGATCGTGTCTGGGACACAGGCCTCGATTGAGGTTTACATATAAGACCATGTCTTGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
* *
63079832 CATCAGCATCGTATTTGATT
66 CATCGGCATCGTATCTGATT
* * * * * *
63079852 TCGTGTAAGACTC-TATTTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCATGTCTG
1 TCGTGTAAGAC-CGTGTCTGGGACACAGGCCTCG--ATTGAGATTTACGTATAAGACCATGTCTG
*
63079914 GGACGTCGG
63 GGACATCGG
63079923 TATTGTACTT
Statistics
Matches: 289, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
85 283 0.98
86 1 0.00
87 5 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
CATCGGCATCGTATCTGATT
Found at i:63079659 original size:43 final size:43
Alignment explanation
Indices: 63079517--63079833 Score: 278
Period size: 43 Copynumber: 7.4 Consensus size: 43
63079507 ATGCATCGTG
*
63079517 TAAGACCGTGTCTGAGACACAGGCCTCGATTGAGATTTACGTA
1 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
** * * *
63079560 TAAGACCGTGTCTGGGACATTGGCATCGTATCT-A-ATTT-TGTG
1 TAAGACCGTGTCTGGGACACAGGCCTCG-AT-TGAGATTTACGTA
* * *
63079602 TAAGATCGTCTCTGGGACACAGACCTCGATTGAGATTTACGTA
1 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
** * *
63079645 TAAGACTATGTCTGGGACATC-GGCATCGTATCT--GATTT-CGTG
1 TAAGACCGTGTCTGGGACA-CAGGCCTCG-AT-TGAGATTTACGTA
*
63079687 TAAGACCGTGTCTGGGACACAGGCCTCAATTGAGATTTACGTA
1 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
* * * *
63079730 TAAGACCATGTCTGGGACATC-GACATCGTATCT--GATTT-CGTG
1 TAAGACCGTGTCTGGGACA-CAGGCCTCG-AT-TGAGATTTACGTA
* * *
63079772 TAAGATCGTGTCTGGGACACAGGCCTCGATTGAGGTTTACATA
1 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
* *
63079815 TAAGACCATGTCTTGGACA
1 TAAGACCGTGTCTGGGACA
63079834 TCAGCATCGT
Statistics
Matches: 214, Mismatches: 41, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
40 3 0.01
41 9 0.04
42 87 0.41
43 103 0.48
44 9 0.04
45 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
Found at i:63091422 original size:38 final size:38
Alignment explanation
Indices: 63091379--63091455 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
63091369 CTTAGTAAGT
*
63091379 TCGAATAATGGAAAGGTAAACTTACCGGTCATTTAACA
1 TCGAATAACGGAAAGGTAAACTTACCGGTCATTTAACA
63091417 TCGAATAACGGAAAGGTAAACTTACCGGTCATTTAACA
1 TCGAATAACGGAAAGGTAAACTTACCGGTCATTTAACA
63091455 T
1 T
63091456 ACATCCAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (38 bp):
TCGAATAACGGAAAGGTAAACTTACCGGTCATTTAACA
Found at i:63092798 original size:59 final size:59
Alignment explanation
Indices: 63092706--63092825 Score: 222
Period size: 59 Copynumber: 2.0 Consensus size: 59
63092696 GTTGAAAACC
*
63092706 CTAGCTATAGAGAACATGCAAATTTCGGCAATATGAAGAAGAAGAATGGCTGATTTTTT
1 CTAGCTATAGAGAACATGCAAATTGCGGCAATATGAAGAAGAAGAATGGCTGATTTTTT
*
63092765 CTAGCTATGGAGAACATGCAAATTGCGGCAATATGAAGAAGAAGAATGGCTGATTTTTT
1 CTAGCTATAGAGAACATGCAAATTGCGGCAATATGAAGAAGAAGAATGGCTGATTTTTT
63092824 CT
1 CT
63092826 TTCATTTTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (59 bp):
CTAGCTATAGAGAACATGCAAATTGCGGCAATATGAAGAAGAAGAATGGCTGATTTTTT
Found at i:63095672 original size:15 final size:15
Alignment explanation
Indices: 63095652--63095682 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63095642 AATCTCTCAT
63095652 TCATTCTCTCATTCA
1 TCATTCTCTCATTCA
*
63095667 TCATTCTCTCTTTCA
1 TCATTCTCTCATTCA
63095682 T
1 T
63095683 TTCTCCATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (15 bp):
TCATTCTCTCATTCA
Found at i:63104434 original size:4 final size:4
Alignment explanation
Indices: 63104425--63104483 Score: 118
Period size: 4 Copynumber: 14.8 Consensus size: 4
63104415 AATAATAATA
63104425 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
63104473 ATAC ATAC ATA
1 ATAC ATAC ATA
63104484 TATTTATAGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:63108387 original size:6 final size:6
Alignment explanation
Indices: 63108193--63108383 Score: 274
Period size: 6 Copynumber: 31.8 Consensus size: 6
63108183 TGTATTTGTA
* * * *
63108193 TCTGTA TCTGTG TCTGTA TCTGTA TCTGTG TCTGTG TCTGTG TCTATG
1 TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG
*
63108241 TCTGTG TCTGTG TCTGTG TCTGTG TTTGTG TCTGTG TCTGTG TCTGTG
1 TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG
63108289 TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG
1 TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG
* * * * * * *
63108337 TCTGTG TCTGTA TCTGTA TCTGTA TTTGTA TCTGTA TCTGTA TCTGT
1 TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGTG TCTGT
63108384 ATCTATATCT
Statistics
Matches: 175, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 175 1.00
ACGTcount: A:0.05, C:0.16, G:0.28, T:0.51
Consensus pattern (6 bp):
TCTGTG
Found at i:63108392 original size:12 final size:12
Alignment explanation
Indices: 63108183--63108399 Score: 182
Period size: 12 Copynumber: 18.1 Consensus size: 12
63108173 GATCTGAATT
*
63108183 TGTATTTGTATC
1 TGTATCTGTATC
*
63108195 TGTATCTGTGTC
1 TGTATCTGTATC
63108207 TGTATCTGTATC
1 TGTATCTGTATC
* *
63108219 TGTGTCTGTGTC
1 TGTATCTGTATC
* * *
63108231 TGTGTCTATGTC
1 TGTATCTGTATC
* *
63108243 TGTGTCTGTGTC
1 TGTATCTGTATC
* * *
63108255 TGTGTCTGTGTT
1 TGTATCTGTATC
* *
63108267 TGTGTCTGTGTC
1 TGTATCTGTATC
* *
63108279 TGTGTCTGTGTC
1 TGTATCTGTATC
* *
63108291 TGTGTCTGTGTC
1 TGTATCTGTATC
* *
63108303 TGTGTCTGTGTC
1 TGTATCTGTATC
* *
63108315 TGTGTCTGTGTC
1 TGTATCTGTATC
* *
63108327 TGTGTCTGTGTC
1 TGTATCTGTATC
*
63108339 TGTGTCTGTATC
1 TGTATCTGTATC
*
63108351 TGTATCTGTATT
1 TGTATCTGTATC
63108363 TGTATCTGTATC
1 TGTATCTGTATC
63108375 TGTATCTGTATC
1 TGTATCTGTATC
* *
63108387 TATATCTGAATC
1 TGTATCTGTATC
63108399 T
1 T
63108400 ATATTTTTAT
Statistics
Matches: 190, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 190 1.00
ACGTcount: A:0.08, C:0.15, G:0.26, T:0.51
Consensus pattern (12 bp):
TGTATCTGTATC
Found at i:63108399 original size:18 final size:18
Alignment explanation
Indices: 63108183--63108399 Score: 182
Period size: 18 Copynumber: 12.1 Consensus size: 18
63108173 GATCTGAATT
*
63108183 TGTATTTGTATCTGTATC
1 TGTATCTGTATCTGTATC
*
63108201 TGTGTCTGTATCTGTATC
1 TGTATCTGTATCTGTATC
* * *
63108219 TGTGTCTGTGTCTGTGTC
1 TGTATCTGTATCTGTATC
* * * *
63108237 TATGTCTGTGTCTGTGTC
1 TGTATCTGTATCTGTATC
* * * *
63108255 TGTGTCTGTGTTTGTGTC
1 TGTATCTGTATCTGTATC
* * *
63108273 TGTGTCTGTGTCTGTGTC
1 TGTATCTGTATCTGTATC
* * *
63108291 TGTGTCTGTGTCTGTGTC
1 TGTATCTGTATCTGTATC
* * *
63108309 TGTGTCTGTGTCTGTGTC
1 TGTATCTGTATCTGTATC
* * *
63108327 TGTGTCTGTGTCTGTGTC
1 TGTATCTGTATCTGTATC
*
63108345 TGTATCTGTATCTGTATT
1 TGTATCTGTATCTGTATC
63108363 TGTATCTGTATCTGTATC
1 TGTATCTGTATCTGTATC
* *
63108381 TGTATCTATATCTGAATC
1 TGTATCTGTATCTGTATC
63108399 T
1 T
63108400 ATATTTTTAT
Statistics
Matches: 184, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 184 1.00
ACGTcount: A:0.08, C:0.15, G:0.26, T:0.51
Consensus pattern (18 bp):
TGTATCTGTATCTGTATC
Found at i:63115195 original size:30 final size:30
Alignment explanation
Indices: 63115152--63115213 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
63115142 CTTAACAAGT
*
63115152 AAATGTCTCTAAAATAATAACAAAATTAAC
1 AAATATCTCTAAAATAATAACAAAATTAAC
* *
63115182 AAATATCTTTAAAATAATAATAAAATTAAC
1 AAATATCTCTAAAATAATAACAAAATTAAC
63115212 AA
1 AA
63115214 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (30 bp):
AAATATCTCTAAAATAATAACAAAATTAAC
Found at i:63116523 original size:25 final size:25
Alignment explanation
Indices: 63116489--63116540 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
63116479 TAATCGGGCA
63116489 TTGAGAGGACGGTTGAGAATTTATT
1 TTGAGAGGACGGTTGAGAATTTATT
63116514 TTGAGAGGACGGTTGAGAATTTATT
1 TTGAGAGGACGGTTGAGAATTTATT
63116539 TT
1 TT
63116541 AGAATTTACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.04, G:0.31, T:0.38
Consensus pattern (25 bp):
TTGAGAGGACGGTTGAGAATTTATT
Found at i:63116879 original size:42 final size:42
Alignment explanation
Indices: 63116820--63116903 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
63116810 GGGACAGGTA
63116820 TAATCATCTCTCTAAGTTAACTCGATTTCAACTCAGAAAGGG
1 TAATCATCTCTCTAAGTTAACTCGATTTCAACTCAGAAAGGG
63116862 TAATCATCTCTCTAAGTTAACTCGATTTCAACTCAGAAAGGG
1 TAATCATCTCTCTAAGTTAACTCGATTTCAACTCAGAAAGGG
63116904 CCCATTGGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.31
Consensus pattern (42 bp):
TAATCATCTCTCTAAGTTAACTCGATTTCAACTCAGAAAGGG
Found at i:63121459 original size:20 final size:20
Alignment explanation
Indices: 63121434--63121474 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
63121424 AAAAAGTAAA
63121434 AGCAGAAATGTAACGGCAAT
1 AGCAGAAATGTAACGGCAAT
63121454 AGCAGAAATGTAACGGCAAT
1 AGCAGAAATGTAACGGCAAT
63121474 A
1 A
63121475 ACGAGATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.24, T:0.15
Consensus pattern (20 bp):
AGCAGAAATGTAACGGCAAT
Found at i:63134103 original size:15 final size:15
Alignment explanation
Indices: 63134083--63134112 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63134073 CATTTTATTT
*
63134083 ATATTAGGATAATTA
1 ATATTAAGATAATTA
63134098 ATATTAAGATAATTA
1 ATATTAAGATAATTA
63134113 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:63134140 original size:27 final size:26
Alignment explanation
Indices: 63134079--63134141 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
63134069 ACTCCATTTT
63134079 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
63134106 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
63134134 ATTTTATT
1 ATTTTATT
63134142 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:63135766 original size:23 final size:23
Alignment explanation
Indices: 63135683--63135803 Score: 152
Period size: 23 Copynumber: 5.1 Consensus size: 23
63135673 CCTAGCCTCT
* * * *
63135683 TTTAGTAACTGGGGTAAAAACCC
1 TTTAATAACTGGGGCATAAGCCC
*
63135706 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
63135730 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
* *
63135755 TTTAATAACTGGGGTATAAACCC
1 TTTAATAACTGGGGCATAAGCCC
63135778 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
63135801 TTT
1 TTT
63135804 TGCACTTCCT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
23 44 0.52
24 18 0.21
25 23 0.27
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:63135876 original size:9 final size:9
Alignment explanation
Indices: 63135862--63135918 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63135852 ATCTCATGTG
63135862 CATATCATA
1 CATATCATA
*
63135871 CATATCATGTG
1 CATATCA--TA
63135882 CATATCATA
1 CATATCATA
* *
63135891 CATGTCATGTG
1 CATATCA--TA
63135902 CATATCATA
1 CATATCATA
63135911 CATATCAT
1 CATATCAT
63135919 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:63135878 original size:20 final size:20
Alignment explanation
Indices: 63135850--63135920 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
63135840 GCATTTATGA
*
63135850 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
63135870 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
63135890 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
63135910 ACATATCATGT
1 ACATATCATGT
63135921 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:63135885 original size:11 final size:11
Alignment explanation
Indices: 63135855--63135909 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63135845 TATGAACATC
63135855 TCATGTGCATA
1 TCATGTGCATA
*
63135866 TCA--TACATA
1 TCATGTGCATA
63135875 TCATGTGCATA
1 TCATGTGCATA
* *
63135886 TCA--TACATG
1 TCATGTGCATA
63135895 TCATGTGCATA
1 TCATGTGCATA
63135906 TCAT
1 TCAT
63135910 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:63142706 original size:40 final size:39
Alignment explanation
Indices: 63142541--63142724 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63142531 AAATTGAATG
* * *
63142541 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63142581 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63142621 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63142661 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63142700 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63142725 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63142749 original size:80 final size:81
Alignment explanation
Indices: 63142581--63142769 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63142571 GCTGGAAATT
* * * *
63142581 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63142646 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63142662 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63142725 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63142741 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63142770 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63152064 original size:40 final size:39
Alignment explanation
Indices: 63151953--63152104 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
63151943 TATAACATGT
* ** *
63151953 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
63151993 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
63152033 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
63152073 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
63152105 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:63152087 original size:80 final size:80
Alignment explanation
Indices: 63151953--63152104 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
63151943 TATAACATGT
* *
63151953 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
63152018 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
63152033 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
63152096 CCCGGATAT
64 CCCGGATAT
63152105 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:63158616 original size:124 final size:124
Alignment explanation
Indices: 63158394--63158618 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
63158384 GAATTATGTG
* * * * * * *
63158394 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
63158459 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
63158518 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
63158583 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
63158619 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:63158740 original size:40 final size:40
Alignment explanation
Indices: 63158613--63158742 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63158603 TTGCTGGAAA
* * *
63158613 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63158653 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63158693 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63158733 TTATATCCGG
1 TTATATCCGG
63158743 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63164749 original size:56 final size:56
Alignment explanation
Indices: 63164663--63164774 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
63164653 GCCGAATTGT
* * *
63164663 GATTGTCTTTGTAATTTGATGTGTTTAAGTTGCAATTTGTCGATGATAGGATGTAA
1 GATTGTCTTTGTAATTTGAGGTGTTTAAGTTGCAATTTGTCCATGATAGCATGTAA
63164719 GATTGTCTTTGTAATTTGAGGTGTTTAAGTTGCAATTTGTCCATGATAGCATGTAA
1 GATTGTCTTTGTAATTTGAGGTGTTTAAGTTGCAATTTGTCCATGATAGCATGTAA
63164775 TGGACGGTAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.44
Consensus pattern (56 bp):
GATTGTCTTTGTAATTTGAGGTGTTTAAGTTGCAATTTGTCCATGATAGCATGTAA
Found at i:63164757 original size:28 final size:28
Alignment explanation
Indices: 63164670--63164758 Score: 71
Period size: 28 Copynumber: 3.2 Consensus size: 28
63164660 TGTGATTGTC
*
63164670 TTTGTAATTTGATGTGTTTAAGTTGCAA
1 TTTGTAATTTGAGGTGTTTAAGTTGCAA
* *
63164698 TTTGTCGATGAT-AGGATG--TAAGATTGTC--
1 TTTGT-AAT-TTGAGG-TGTTTAAG-TTG-CAA
63164726 TTTGTAATTTGAGGTGTTTAAGTTGCAA
1 TTTGTAATTTGAGGTGTTTAAGTTGCAA
63164754 TTTGT
1 TTTGT
63164759 CCATGATAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 20
0.65 0.07 0.28
Matches are distributed among these distances:
26 4 0.09
27 8 0.17
28 23 0.50
29 7 0.15
30 4 0.09
ACGTcount: A:0.24, C:0.04, G:0.25, T:0.47
Consensus pattern (28 bp):
TTTGTAATTTGAGGTGTTTAAGTTGCAA
Found at i:63165804 original size:43 final size:42
Alignment explanation
Indices: 63165757--63165909 Score: 166
Period size: 43 Copynumber: 3.6 Consensus size: 42
63165747 TGTTCTCGAT
*
63165757 TAAAACCACGTCTGGGACGTTGGCATCGATATGTGATTATGTG
1 TAAAACCACGTCTGGGACGTTGGCATCGATATGTGATT-CGTG
* * *
63165800 TAAAACCATGTCTGGGACATTGGCATCG-TATTTGATTCGTG
1 TAAAACCACGTCTGGGACGTTGGCATCGATATGTGATTCGTG
* * ** *
63165841 TAAGACCATGTCTGGGACAG-TGGCATTTATATGTGATTGCATG
1 TAAAACCACGTCTGGGAC-GTTGGCATCGATATGTGATT-CGTG
* *
63165884 TAAGACCACGTCTGGGATGTTGGCAT
1 TAAAACCACGTCTGGGACGTTGGCAT
63165910 TGTACGATAT
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 26 0.28
42 17 0.18
43 51 0.54
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
TAAAACCACGTCTGGGACGTTGGCATCGATATGTGATTCGTG
Found at i:63170187 original size:40 final size:40
Alignment explanation
Indices: 63170108--63170265 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
63170098 TTCGAATGAT
* * * *
63170108 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
63170148 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
63170188 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
63170228 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
63170266 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:63170286 original size:80 final size:80
Alignment explanation
Indices: 63170108--63170295 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
63170098 TTCGAATGAT
* *
63170108 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
63170173 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
63170188 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
63170249 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
63170269 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
63170296 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:63178257 original size:40 final size:40
Alignment explanation
Indices: 63178178--63178334 Score: 158
Period size: 40 Copynumber: 4.0 Consensus size: 40
63178168 TTCGAATGAT
* * * *
63178178 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
63178218 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
63178258 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
63178298 ATCCGGGTTGAG-TCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACT
63178335 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 21 0.22
40 69 0.72
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:63178355 original size:79 final size:80
Alignment explanation
Indices: 63178178--63178364 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
63178168 TTCGAATGAT
* *
63178178 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
63178243 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
63178258 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCGAAGGC
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGATCCGAAGGC
* *
63178319 ATTCGTGCGAGTTACTGTA
63 ATACGTGCGAGTTACT-AA
*
63178338 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
63178365 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
78 1 0.01
79 41 0.45
80 44 0.48
81 5 0.05
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:63185157 original size:46 final size:45
Alignment explanation
Indices: 63185090--63185265 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
63185080 TATTTGGGCA
63185090 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
63185136 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
63185183 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
63185229 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63185266 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:63185245 original size:93 final size:93
Alignment explanation
Indices: 63185086--63185257 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
63185076 AGGATATTTG
*
63185086 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
63185151 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
63185179 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
63185243 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
63185258 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:63193936 original size:45 final size:46
Alignment explanation
Indices: 63193792--63193962 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
63193782 AGGATATTTG
*** *
63193792 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTA
*
63193835 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-AGAGATGTAACTA
*
63193885 GGCATCCGAACTCGTTGAGTTGAGTTC-AGTTCAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTA
*
63193930 GGCATCC-AGCTCGTTGAGTTGAGTCCGAGTTCA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
63193963 CTTATGGGCG
Statistics
Matches: 111, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
43 1 0.01
44 19 0.17
45 26 0.23
46 34 0.31
47 26 0.23
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTA
Found at i:63196899 original size:15 final size:15
Alignment explanation
Indices: 63196860--63196936 Score: 65
Period size: 15 Copynumber: 5.4 Consensus size: 15
63196850 GTATCTTGGG
*
63196860 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
63196875 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
63196890 TTTCTTTATT-TGGG
1 TTTCTTTATTCTGGA
*
63196904 TTTC-TCA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
63196918 TTT-TTTATTC-GGT
1 TTTCTTTATTCTGGA
63196931 TTTCTT
1 TTTCTT
63196937 GTTATCTTTG
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
12 1 0.02
13 7 0.14
14 17 0.35
15 24 0.49
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63199361 original size:46 final size:45
Alignment explanation
Indices: 63199307--63199530 Score: 195
Period size: 47 Copynumber: 4.8 Consensus size: 45
63199297 ATATTTGGGC
*
63199307 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGA-T-GCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAG-GA
*** * *
63199351 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GACTAGGA
*** * *
63199400 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GACTAGGA
* *
63199447 ATCCGAACTCGTTGAGTTTAGTCTGAGTTCACTTATGGA-T-GCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAG-GA
* *
63199491 ACGCTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 A-TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63199531 GCGGGTTACA
Statistics
Matches: 154, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 2 0.01
46 64 0.42
47 78 0.51
48 1 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACTAGGA
Found at i:63199419 original size:47 final size:47
Alignment explanation
Indices: 63199354--63199476 Score: 228
Period size: 47 Copynumber: 2.6 Consensus size: 47
63199344 GATGCGAATG
63199354 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
63199401 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* *
63199448 TCCGAACTCGTTGAGTTTAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
63199477 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:63212884 original size:27 final size:27
Alignment explanation
Indices: 63212854--63212944 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
63212844 GGGCATAATC
* *
63212854 GTCATTCTACCATATAGGGGTATTATG
1 GTCATTTTACCATATAGGGGTATTACG
* * *
63212881 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCATATAGGGGTATTACG
*
63212908 GTCATTTTA-CACTATAAGGGTATTTA-G
1 GTCATTTTACCA-TATAGGGGTA-TTACG
*
63212935 GTAATTTTAC
1 GTCATTTTAC
63212945 AAACTGGGGT
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
26 1 0.02
27 47 0.92
28 3 0.06
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATATAGGGGTATTACG
Found at i:63214492 original size:25 final size:24
Alignment explanation
Indices: 63214463--63214530 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
63214453 CAAGCATTGT
*
63214463 CGGGAAGCTCA-AAGAGCCAATTTAG
1 CGGGAAGCTCACAAGAGCC--TATAG
* *
63214488 CGGGAAGATCACGAAGAGCCTATAT
1 CGGGAAGCTCAC-AAGAGCCTATAG
*
63214513 CGGGAAGCTCATAAGAGC
1 CGGGAAGCTCACAAGAGC
63214531 TAAGGTGTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
24 6 0.17
25 23 0.64
27 7 0.19
ACGTcount: A:0.35, C:0.21, G:0.29, T:0.15
Consensus pattern (24 bp):
CGGGAAGCTCACAAGAGCCTATAG
Found at i:63226191 original size:49 final size:49
Alignment explanation
Indices: 63226128--63226625 Score: 870
Period size: 49 Copynumber: 10.1 Consensus size: 49
63226118 ATGTATGAGA
*
63226128 TATATTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATA-TATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
63226178 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
63226227 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
63226276 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
63226325 AATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
63226374 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
63226423 AATATATGTGATAAGGCCTAATGGCCGACTTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* * *
63226472 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
63226521 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
63226570 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
63226619 TATATAT
1 TATATAT
63226626 ATGGGTAAAG
Statistics
Matches: 432, Mismatches: 16, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
49 428 0.99
50 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
Found at i:63226748 original size:37 final size:36
Alignment explanation
Indices: 63226698--63226779 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 36
63226688 AGAAATATGT
63226698 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGT-AGACCCGATGACTACGTGTGGAGATTACG
*
63226735 TCCGGGTACGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTA-GACCCGATGACTACGTGTGGAGATTACG
63226772 TCCGGGTA
1 TCCGGGTA
63226780 AGACTTCGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.23
Consensus pattern (36 bp):
TCCGGGTAGACCCGATGACTACGTGTGGAGATTACG
Found at i:63228659 original size:40 final size:40
Alignment explanation
Indices: 63228604--63228928 Score: 551
Period size: 40 Copynumber: 8.1 Consensus size: 40
63228594 GAGAATTGAG
*
63228604 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
63228644 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
63228684 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
63228724 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
63228764 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
63228804 AGTGATGTATCCGGACTAAATTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
63228844 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
63228884 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
63228924 AGTGA
1 AGTGA
63228929 CGTGTATTCG
Statistics
Matches: 273, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 273 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:63229744 original size:41 final size:40
Alignment explanation
Indices: 63229672--63229761 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 40
63229662 CCGGGCTAAG
* * *
63229672 TCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAAT
1 TCCCGAAGGCATTTGTGCTAAGTGACAAAAT-CGGGTCAAA
* * *
63229713 TCCCGAAGGCATTTGTG-TGAGTTACCAAAATCGGGTTAAA
1 TCCCGAAGGCATTTGTGCTAAGTGA-CAAAATCGGGTCAAA
63229753 TCCCGAAGG
1 TCCCGAAGG
63229762 TACGTGATTC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 21 0.50
41 21 0.50
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCCGAAGGCATTTGTGCTAAGTGACAAAATCGGGTCAAA
Found at i:63229759 original size:40 final size:41
Alignment explanation
Indices: 63229660--63229761 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 41
63229650 TTCGAATGGT
* * * *
63229660 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAATCCCGAAGGCATTTGTGCTAAGTGACAAA
* * * *
63229701 ATCCGGGTCAATTCCCGAAGGCATTTGTG-TGAGTTACCAAA
1 ATCCGGGTTAAATCCCGAAGGCATTTGTGCTAAGTGA-CAAA
63229742 AT-CGGGTTAAATCCCGAAGG
1 ATCCGGGTTAAATCCCGAAGG
63229762 TACGTGATTC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
40 21 0.41
41 30 0.59
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (41 bp):
ATCCGGGTTAAATCCCGAAGGCATTTGTGCTAAGTGACAAA
Found at i:63232612 original size:49 final size:49
Alignment explanation
Indices: 63232548--63232899 Score: 589
Period size: 49 Copynumber: 7.2 Consensus size: 49
63232538 ATGTATGAGA
* * *
63232548 TATATTTATGTGATAAGGCCTAATGGCTGATATGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63232597 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63232646 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63232695 TGA-ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 T-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63232744 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63232793 TATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
63232842 TATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
63232891 TATATATAT
1 TATATATAT
63232900 ATGTGGTAAA
Statistics
Matches: 287, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 1 0.00
49 286 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:63233016 original size:37 final size:37
Alignment explanation
Indices: 63232983--63233054 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
63232973 TTCGGGTGAT
63232983 ACCCGATGACTACGTGTGGAGATTACGTCCGGGTACG
1 ACCCGATGACTACGTGTGGAGATTACGTCCGGGTACG
*
63233020 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 ACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
63233055 AGACTTCGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (37 bp):
ACCCGATGACTACGTGTGGAGATTACGTCCGGGTACG
Found at i:63238586 original size:28 final size:28
Alignment explanation
Indices: 63238546--63238624 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
63238536 TCGACTAAAT
* * *
63238546 ATGGCACTTAGTGTGTGAAATATTGAGC
1 ATGGCACTTAGTGTGCGAAATATTAAGA
*
63238574 ATGGCACTTAGTGTGCGAGATATTAAGA
1 ATGGCACTTAGTGTGCGAAATATTAAGA
* *
63238602 ACGACACTTAGTGTGCGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
63238625 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTAAGA
Found at i:63244931 original size:28 final size:28
Alignment explanation
Indices: 63244891--63244947 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
63244881 GCAATCAAAT
*
63244891 ATGGCACTCAGTGTACGAAATATTTAGA
1 ATGGCACTCAGTGTACGAAATATTGAGA
* *
63244919 ATGGCAC-CTAGTGTGCGAGATATTGAGA
1 ATGGCACTC-AGTGTACGAAATATTGAGA
63244947 A
1 A
63244948 CAACACTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 1 0.04
28 24 0.96
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (28 bp):
ATGGCACTCAGTGTACGAAATATTGAGA
Found at i:63247144 original size:40 final size:40
Alignment explanation
Indices: 63247071--63247263 Score: 181
Period size: 40 Copynumber: 4.8 Consensus size: 40
63247061 CAATTGAATG
* * **
63247071 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTAATT
* * * **
63247111 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCTAGTAATT
* * **
63247151 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTAATT
* * * * **
63247191 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTAATT
* *
63247231 CTATCCGGGCTAAGACCCGAAGCCATTCGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCT
63247264 TGTGGTTATA
Statistics
Matches: 125, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
39 4 0.03
40 117 0.94
41 4 0.03
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTAATT
Found at i:63247209 original size:80 final size:80
Alignment explanation
Indices: 63247073--63247262 Score: 204
Period size: 80 Copynumber: 2.4 Consensus size: 80
63247063 ATTGAATGAT
* ** * * *
63247073 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAATTAAACCCGGGCTAAGACCCGAAGG-CAT
*
63247137 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* ** * *
63247153 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAATTAAACCCGGGCTAAGACCCGAAGGCATT
** *
63247218 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
*
63247233 ATCCGGGCTAAGACCCGAAGCCATTCGTGC
1 ATCCGGGCTAAGACCCGAAGACATTCGTGC
63247263 TTGTGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 2 0.02
80 88 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACATTCGTGCAAGTAATTAAACCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:63249209 original size:22 final size:22
Alignment explanation
Indices: 63249184--63249230 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
63249174 TTGAATGAGT
63249184 ATGTATTTAAAGCCATGCGAAA
1 ATGTATTTAAAGCCATGCGAAA
*
63249206 ATGTATTTCAAGCCATGCGAAA
1 ATGTATTTAAAGCCATGCGAAA
63249228 ATG
1 ATG
63249231 ACTTGCTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (22 bp):
ATGTATTTAAAGCCATGCGAAA
Found at i:63255132 original size:28 final size:27
Alignment explanation
Indices: 63255089--63255155 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 27
63255079 TGGAGGAAGC
* *
63255089 GTTCTGTTGGCCATGCCAAAAATATCT
1 GTTCTGGTGGCTATGCCAAAAATATCT
*
63255116 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAAAAATATCT
63255144 GTTCTGGTGGCT
1 GTTCTGGTGGCT
63255156 CTACCACAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 12 0.33
28 24 0.67
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCAAAAATATCT
Found at i:63255162 original size:27 final size:26
Alignment explanation
Indices: 63255109--63255203 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
63255099 CCATGCCAAA
*
63255109 AATATCTGTTTCTGGTGGCTATGCCAC
1 AATATCTG-TTCTGGTGGCTCTGCCAC
*
63255136 AAATATCTGTTCTGGTGGCTCTACCAC
1 -AATATCTGTTCTGGTGGCTCTGCCAC
* * *
63255163 AATATCTGTATTTGGTGACTCTGTCAC
1 AATATCTGT-TCTGGTGGCTCTGCCAC
*
63255190 AATATCTATTCTGG
1 AATATCTGTTCTGG
63255204 CAGCCATGCT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.22
27 37 0.64
28 8 0.14
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (26 bp):
AATATCTGTTCTGGTGGCTCTGCCAC
Found at i:63261360 original size:29 final size:29
Alignment explanation
Indices: 63261328--63261429 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
63261318 ATAGTGAATC
63261328 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63261357 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
63261386 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63261415 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63261430 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:63268877 original size:29 final size:29
Alignment explanation
Indices: 63268845--63269003 Score: 286
Period size: 29 Copynumber: 5.5 Consensus size: 29
63268835 ATAGTGAATC
63268845 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63268874 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
63268904 --CACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63268931 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
63268960 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63268989 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63269004 GTACAATTTT
Statistics
Matches: 126, Mismatches: 1, Indels: 6
0.95 0.01 0.05
Matches are distributed among these distances:
27 10 0.08
28 17 0.13
29 89 0.71
30 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:63268920 original size:57 final size:58
Alignment explanation
Indices: 63268847--63269013 Score: 284
Period size: 57 Copynumber: 2.9 Consensus size: 58
63268837 AGTGAATCCG
63268847 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT-
1 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTC
63268904 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGCTC
1 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTC
* * *
63268961 GCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTT
1 -CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTT
63269014 TAAACCCGCA
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
56 10 0.10
57 46 0.44
58 43 0.41
59 5 0.05
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (58 bp):
CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTC
Found at i:63282482 original size:46 final size:45
Alignment explanation
Indices: 63282415--63282536 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 45
63282405 AACCCGCCCC
*
63282415 TAAGTGAACTCGGACTCAACTCAACGAGCTTGGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTGGACATTCGCATCCA
*
63282461 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTT-GGACATTCGCATCCA
63282507 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
63282537 TGGATGCTCA
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
45 2 0.03
46 70 0.97
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTGGACATTCGCATCCA
Found at i:63282559 original size:46 final size:45
Alignment explanation
Indices: 63282417--63282559 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
63282407 CCCGCCCCTA
* * * *
63282417 AGTGAACTCGGACTCAACTCAACGAGCTTGGACGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCACCATCC-T
* * *** *
63282462 AAGTGAACTCGGACTCAACTCAATGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCACCATCC-T
63282508 AAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTC-ACCATCCT
63282555 AGTGA
1 AGTGA
63282560 CATGTCACTT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCACCATCCT
Found at i:63284329 original size:26 final size:22
Alignment explanation
Indices: 63284282--63284325 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
63284272 CTTCAATAAA
63284282 ACTTTAGTTATTTTTATCTATG
1 ACTTTAGTTATTTTTATCTATG
63284304 ACTTTAGTTATTTTTATCTATG
1 ACTTTAGTTATTTTTATCTATG
63284326 TATGTCCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.59
Consensus pattern (22 bp):
ACTTTAGTTATTTTTATCTATG
Found at i:63288791 original size:29 final size:29
Alignment explanation
Indices: 63288759--63288860 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
63288749 ATAGTGAATC
*
63288759 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGTT
63288788 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
63288817 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGTT
63288846 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63288861 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGTT
Found at i:63290227 original size:19 final size:18
Alignment explanation
Indices: 63290203--63290238 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
63290193 CCCCCTTTTT
*
63290203 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
63290222 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
63290239 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:63296477 original size:27 final size:29
Alignment explanation
Indices: 63296447--63296531 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
63296437 ACGCAAGAGC
*
63296447 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
63296474 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
63296503 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
63296532 GTACAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 43 0.84
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:63296491 original size:29 final size:29
Alignment explanation
Indices: 63296459--63296531 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
63296449 ATAGTGAATC
63296459 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
63296488 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
63296517 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63296532 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:63297016 original size:2 final size:2
Alignment explanation
Indices: 63297009--63297041 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
63296999 CATACTTATG
63297009 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63297042 GGCATCACGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63298930 original size:46 final size:46
Alignment explanation
Indices: 63298877--63299052 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
63298867 TATTTGGGCA
63298877 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
63298923 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
63298970 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
63299016 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63299053 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:63299032 original size:93 final size:93
Alignment explanation
Indices: 63298873--63299044 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63298863 GGGATATTTG
* *
63298873 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63298938 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
63298966 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63299031 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
63299045 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:63302022 original size:15 final size:15
Alignment explanation
Indices: 63302002--63302070 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
63301992 GTATCTTGGG
63302002 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
63302017 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
63302032 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
63302047 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
63302062 TTTCTTTAT
1 TTTCTTTAT
63302071 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:63302071 original size:30 final size:30
Alignment explanation
Indices: 63301993--63302080 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
63301983 CATAGTATCG
* * * *
63301993 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
63302023 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
63302053 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
63302081 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:63304518 original size:46 final size:46
Alignment explanation
Indices: 63304465--63304640 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
63304455 TATTTGGGCA
63304465 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
63304511 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
63304558 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
63304604 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63304641 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:63304620 original size:93 final size:93
Alignment explanation
Indices: 63304461--63304632 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63304451 GGGATATTTG
* *
63304461 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63304526 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
63304554 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63304619 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
63304633 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:63306279 original size:19 final size:18
Alignment explanation
Indices: 63306255--63306290 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
63306245 CCCCCTTTTT
*
63306255 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
63306274 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
63306291 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:63310093 original size:40 final size:40
Alignment explanation
Indices: 63310044--63310231 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
63310034 GCTACTTGCT
63310044 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63310084 CAAACGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63310124 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
63310164 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
63310203 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63310232 CATCCGAATA
Statistics
Matches: 139, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 103 0.74
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63310230 original size:79 final size:80
Alignment explanation
Indices: 63310011--63310231 Score: 324
Period size: 80 Copynumber: 2.8 Consensus size: 80
63310001 AAACCAAGTA
* * * *
63310011 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
63310074 GTAACTCGCACAAACG
65 GTAACTCGCACAAACG
* *
63310090 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
63310155 TAACTCGCACAAATG
66 TAACTCGCACAAACG
*
63310170 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63310232 CATCCGAATA
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 62 0.48
80 67 0.52
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAACG
Found at i:63316140 original size:40 final size:40
Alignment explanation
Indices: 63316013--63316142 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
63316003 ATGCTGGAAA
* *
63316013 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63316053 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63316093 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63316133 TTATATCCGG
1 TTATATCCGG
63316143 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63319872 original size:39 final size:40
Alignment explanation
Indices: 63319818--63319993 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
63319808 AAACCAAGTA
* * * *
63319818 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
63319857 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63319897 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63319937 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63319976 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
63319994 TTATCATCCG
Statistics
Matches: 125, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 47 0.38
40 77 0.62
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63319895 original size:40 final size:40
Alignment explanation
Indices: 63319851--63319997 Score: 237
Period size: 40 Copynumber: 3.7 Consensus size: 40
63319841 GCTACTTGCT
63319851 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63319891 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
63319931 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
63319970 CAAATGCCTTCGGGACTTAGCCC-GTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63319998 CATCCGAATA
Statistics
Matches: 100, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
38 1 0.01
39 36 0.36
40 63 0.63
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63319950 original size:79 final size:79
Alignment explanation
Indices: 63319851--63319997 Score: 235
Period size: 79 Copynumber: 1.9 Consensus size: 79
63319841 GCTACTTGCT
* *
63319851 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC-
63319915 GTTATAGTAACTCGCA
64 GTTATAGTAACTCGCA
*
63319931 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGT
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGT
63319995 TAT
66 TAT
63319998 CATCCGAATA
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
78 5 0.08
79 43 0.68
80 15 0.24
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGT
TATAGTAACTCGCA
Found at i:63322562 original size:79 final size:82
Alignment explanation
Indices: 63322422--63322606 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
63322412 TCGAATGATG
* * *
63322422 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
63322486 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
63322502 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
63322564 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
63322582 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63322607 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:63322614 original size:40 final size:40
Alignment explanation
Indices: 63322423--63322614 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
63322413 CGAATGATGT
* * * * *
63322423 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
63322463 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
63322503 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
63322542 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
63322582 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
63322615 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:63322637 original size:79 final size:79
Alignment explanation
Indices: 63322422--63322639 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
63322412 TCGAATGATG
* * * * ** *
63322422 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
63322485 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
63322502 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
63322567 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
63322582 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
63322640 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:63333198 original size:40 final size:40
Alignment explanation
Indices: 63333131--63333235 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
63333121 AAATTGAATG
* * * * *
63333131 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
63333171 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
*
63333211 ATATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
63333236 TTCGTGCGAG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:63333256 original size:40 final size:39
Alignment explanation
Indices: 63333170--63333295 Score: 128
Period size: 40 Copynumber: 3.2 Consensus size: 39
63333160 TGCTGGAAAT
* * * *
63333170 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCTGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
63333210 TATATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCTGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* * *
63333250 TCTATCTGGGCTAGGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCTGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
63333290 TATATC
1 TATATC
63333296 CGGTTATATT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.05
40 67 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TATATCTGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:63335808 original size:47 final size:45
Alignment explanation
Indices: 63335653--63335916 Score: 200
Period size: 47 Copynumber: 5.7 Consensus size: 45
63335643 TTTGTGCGCC
* *
63335653 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATCC--AGACGAGGGGT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGG---CCAAAGA-GAGTGCT
* * * ** *
63335701 AGTGTGAGACATGTCTGGGACAT-GTATCAGCCATATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCA-AAGA-GAGTGCT
*
63335747 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC-CAAAGA-GAGTGCT
*
63335795 AGAGTAAGACATGTCTGGGACAT-GCATCGGCCTCAACAGAGA-TAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGG-C-CAA-AGAGAGT-GCT
* * * * *
63335842 AGTGTAAGACGTATCTGGGACA-CGAATCGGCC-AAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCAAAGAG-AGTGCT
*
63335886 AGTGTAAGACATGTCTGGGACAGGGCATCGG
1 AGTGTAAGACATGTCTGGGACATGGCATCGG
63335917 TAATTTATCC
Statistics
Matches: 176, Mismatches: 27, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.03
44 24 0.14
45 8 0.05
46 28 0.16
47 75 0.43
48 33 0.19
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCAAAGAGAGTGCT
Found at i:63338578 original size:18 final size:18
Alignment explanation
Indices: 63338555--63338590 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
63338545 GTAGGTAGTG
63338555 TTAGGAATGCTAGACCTA
1 TTAGGAATGCTAGACCTA
*
63338573 TTAGGAATGCTGGACCTA
1 TTAGGAATGCTAGACCTA
63338591 AATGTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (18 bp):
TTAGGAATGCTAGACCTA
Found at i:63341372 original size:21 final size:21
Alignment explanation
Indices: 63341348--63341402 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
63341338 TCTACTGCCA
*
63341348 TCGCTGCTGCCTCTGCCTCTC
1 TCGCTGCTGCCTCTGCCTCCC
* *
63341369 TCGCTGCTGTCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
63341390 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
63341403 CACTCTAAGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.00, C:0.47, G:0.20, T:0.33
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:63341828 original size:13 final size:14
Alignment explanation
Indices: 63341802--63341830 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
63341792 ACTAACGATG
63341802 AATTAAACCATTAT
1 AATTAAACCATTAT
63341816 AATTAAA-CATTAT
1 AATTAAACCATTAT
63341829 AA
1 AA
63341831 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:63345685 original size:34 final size:34
Alignment explanation
Indices: 63345635--63345703 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
63345625 ATAAACGAAG
63345635 ATTGCTTCAAGAAAATCCATGGAGGCAAATTGTA
1 ATTGCTTCAAGAAAATCCATGGAGGCAAATTGTA
* *
63345669 ATTGCTTCATGCAAATCCATGGAGGCAAATTGTA
1 ATTGCTTCAAGAAAATCCATGGAGGCAAATTGTA
63345703 A
1 A
63345704 GGAACAAGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (34 bp):
ATTGCTTCAAGAAAATCCATGGAGGCAAATTGTA
Found at i:63346982 original size:9 final size:9
Alignment explanation
Indices: 63346968--63347300 Score: 127
Period size: 9 Copynumber: 38.1 Consensus size: 9
63346958 TATGTATTAC
*
63346968 GTAAGTTAA
1 GTAAGTTAT
*
63346977 GTAAGTTTT
1 GTAAGTTAT
* *
63346986 GTAACTTTT
1 GTAAGTTAT
*
63346995 GTAAGTTTT
1 GTAAGTTAT
*
63347004 GTAACTTAT
1 GTAAGTTAT
63347013 GTAAGTTAT
1 GTAAGTTAT
63347022 GTAAGTTAT
1 GTAAGTTAT
* *
63347031 GATATGATAT
1 G-TAAGTTAT
* *
63347041 -AAATTTAT
1 GTAAGTTAT
*
63347049 GTAAGGTAT
1 GTAAGTTAT
63347058 GTAAGTTAT
1 GTAAGTTAT
*
63347067 GTAAATTAT
1 GTAAGTTAT
* **
63347076 GATATGAAAT
1 G-TAAGTTAT
* *
63347086 AT-ATTTAT
1 GTAAGTTAT
* *
63347094 -TTA-TTAC
1 GTAAGTTAT
63347101 GTAAGTTAT
1 GTAAGTTAT
*
63347110 GTAAGTTAC
1 GTAAGTTAT
* *
63347119 AT-ATTTAT
1 GTAAGTTAT
63347127 GT-A-TTAT
1 GTAAGTTAT
* *
63347134 GAAAGTTTT
1 GTAAGTTAT
*
63347143 GTAAGTAAT
1 GTAAGTTAT
63347152 GTAAGTTAT
1 GTAAGTTAT
* *
63347161 GATATGATAT
1 G-TAAGTTAT
* *
63347171 -AAATTTAT
1 GTAAGTTAT
* *
63347179 ATAAGGTAT
1 GTAAGTTAT
*
63347188 GTAAGGTAT
1 GTAAGTTAT
63347197 GTAAGTTAT
1 GTAAGTTAT
*
63347206 GTAAATTAT
1 GTAAGTTAT
* **
63347215 GATATGAAAT
1 G-TAAGTTAT
* *
63347225 AT-ATTTAT
1 GTAAGTTAT
* *
63347233 -TTA-TTAC
1 GTAAGTTAT
63347240 GTAAGTTAT
1 GTAAGTTAT
63347249 GTAAGTTAT
1 GTAAGTTAT
* *
63347258 AT-ATTTAT
1 GTAAGTTAT
*
63347266 AT-A-TTAT
1 GTAAGTTAT
*
63347273 GTAAGTTTT
1 GTAAGTTAT
63347282 GTAAGTTAT
1 GTAAGTTAT
*
63347291 GTAACTTAT
1 GTAAGTTAT
63347300 G
1 G
63347301 ATATGATATA
Statistics
Matches: 237, Mismatches: 71, Indels: 32
0.70 0.21 0.09
Matches are distributed among these distances:
7 18 0.08
8 34 0.14
9 165 0.70
10 20 0.08
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:63347132 original size:33 final size:33
Alignment explanation
Indices: 63347086--63347148 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
63347076 GATATGAAAT
* *
63347086 ATATTTATTTATTACGTAAGTTATGTAAGTTAC
1 ATATTTATGTATTACGAAAGTTATGTAAGTTAC
* *
63347119 ATATTTATGTATTATGAAAGTTTTGTAAGT
1 ATATTTATGTATTACGAAAGTTATGTAAGT
63347149 AATGTAAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.49
Consensus pattern (33 bp):
ATATTTATGTATTACGAAAGTTATGTAAGTTAC
Found at i:63347172 original size:130 final size:130
Alignment explanation
Indices: 63347012--63347316 Score: 475
Period size: 139 Copynumber: 2.3 Consensus size: 130
63347002 TTGTAACTTA
63347012 TGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGTATGTAAGTTATGTAAATTATG
1 TGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGTATGTAAGTTATGTAAATTATG
*
63347077 ATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTTATGTATTATGAAAGTTT
66 ATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTTATATATTATGAAAGTTT
*
63347142 TGTAAGTAATGTAAGTTATGATATGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATG
1 TGTAAGTTATGTAAGTTATGATATGATAT-AA---AT-T----TATGTAAGGTATGTAAGTTATG
*
63347207 TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTATATATTTATATATTA
57 TAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTTATATATTA
*
63347272 TGTAAGTTT
122 TGAAAGTTT
* *
63347281 TGTAAGTTATGTAACTTATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATAAATTTA
63347317 ACATTAAGAT
Statistics
Matches: 159, Mismatches: 7, Indels: 18
0.86 0.04 0.10
Matches are distributed among these distances:
130 30 0.19
131 2 0.01
134 3 0.02
135 3 0.02
138 1 0.01
139 120 0.75
ACGTcount: A:0.37, C:0.01, G:0.16, T:0.46
Consensus pattern (130 bp):
TGTAAGTTATGTAAGTTATGATATGATATAAATTTATGTAAGGTATGTAAGTTATGTAAATTATG
ATATGAAATATATTTATTTATTACGTAAGTTATGTAAGTTACATATTTATATATTATGAAAGTTT
Found at i:63347196 original size:139 final size:139
Alignment explanation
Indices: 63347046--63347316 Score: 488
Period size: 139 Copynumber: 1.9 Consensus size: 139
63347036 GATATAAATT
63347046 TATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATG
1 TATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATG
* *
63347111 TAAGTTACATATTTATGTATTATGAAAGTTTTGTAAGTAATGTAAGTTATGATATGATATAAATT
66 TAAGTTACATATTTATATATTATGAAAGTTTTGTAAGTAATGTAACTTATGATATGATATAAATT
63347176 TATATAAGG
131 TATATAAGG
63347185 TATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATG
1 TATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATG
* * * *
63347250 TAAGTTATATATTTATATATTATGTAAGTTTTGTAAGTTATGTAACTTATGATATGATATATATT
66 TAAGTTACATATTTATATATTATGAAAGTTTTGTAAGTAATGTAACTTATGATATGATATAAATT
63347315 TA
131 TA
63347317 ACATTAAGAT
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
139 126 1.00
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.46
Consensus pattern (139 bp):
TATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTATG
TAAGTTACATATTTATATATTATGAAAGTTTTGTAAGTAATGTAACTTATGATATGATATAAATT
TATATAAGG
Found at i:63347208 original size:54 final size:52
Alignment explanation
Indices: 63347142--63347257 Score: 142
Period size: 54 Copynumber: 2.2 Consensus size: 52
63347132 ATGAAAGTTT
* * * *
63347142 TGTAAGTAATGTAAGTTATGATATGATATAAATTTATATAAGGTATGTAAGGTA
1 TGTAAGTTATGTAAATTATGATATGAAATAAATTTAT-TAA-GTACGTAAGGTA
* * * *
63347196 TGTAAGTTATGTAAATTATGATATGAAATATATTTATTTATTACGTAAGTTA
1 TGTAAGTTATGTAAATTATGATATGAAATAAATTTATTAAGTACGTAAGGTA
63347248 TGTAAGTTAT
1 TGTAAGTTAT
63347258 ATATTTATAT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
52 19 0.35
53 2 0.04
54 33 0.61
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.43
Consensus pattern (52 bp):
TGTAAGTTATGTAAATTATGATATGAAATAAATTTATTAAGTACGTAAGGTA
Found at i:63347260 original size:33 final size:33
Alignment explanation
Indices: 63347223--63347290 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
63347213 ATGATATGAA
*
63347223 ATATATTTATTTATTACGTAAGTTATGTAAGTT
1 ATATATTTATATATTACGTAAGTTATGTAAGTT
* *
63347256 ATATATTTATATATTATGTAAGTTTTGTAAGTT
1 ATATATTTATATATTACGTAAGTTATGTAAGTT
63347289 AT
1 AT
63347291 GTAACTTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.53
Consensus pattern (33 bp):
ATATATTTATATATTACGTAAGTTATGTAAGTT
Found at i:63347291 original size:85 final size:88
Alignment explanation
Indices: 63347152--63347316 Score: 237
Period size: 85 Copynumber: 1.9 Consensus size: 88
63347142 TGTAAGTAAT
*
63347152 GTAAGTTATGATATGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
1 GTAAGTTATGATAAGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
63347217 TATGAAATATATTTATTTATTAC
66 TATGAAATATATTTATTTATTAC
* * * * * *
63347240 GTAAGTTATG-TAAGTTATATATTTATAT-A-TTATGTAAGTTTTGTAAGTTATGTAACTTATGA
1 GTAAGTTATGATAAGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
*
63347302 TATGATATATATTTA
66 TATGAAATATATTTA
63347317 ACATTAAGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
85 43 0.62
86 1 0.01
87 15 0.22
88 10 0.14
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.46
Consensus pattern (88 bp):
GTAAGTTATGATAAGATATAAATTTATATAAGGTATGTAAGGTATGTAAGTTATGTAAATTATGA
TATGAAATATATTTATTTATTAC
Found at i:63349218 original size:31 final size:31
Alignment explanation
Indices: 63349180--63349242 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
63349170 CCTAAAACAA
*
63349180 AATTCAAGACAGCAAGAACTACGAAGCACTT
1 AATTCAAGACAGCAAGAACTAAGAAGCACTT
63349211 AATTCAAGACAGCAAGAACTAAGAAGCACTT
1 AATTCAAGACAGCAAGAACTAAGAAGCACTT
63349242 A
1 A
63349243 CTTTGTTGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.21, G:0.16, T:0.16
Consensus pattern (31 bp):
AATTCAAGACAGCAAGAACTAAGAAGCACTT
Found at i:63352814 original size:17 final size:18
Alignment explanation
Indices: 63352784--63352818 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
63352774 TAGATTTATT
63352784 TAATATATAATTTAAAAA
1 TAATATATAATTTAAAAA
63352802 TAATATA-AATTTAAAAA
1 TAATATATAATTTAAAAA
63352819 CAATCAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATATATAATTTAAAAA
Found at i:63352952 original size:16 final size:16
Alignment explanation
Indices: 63352931--63352978 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
63352921 AGAATTAGAT
63352931 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
63352947 AAAA-TT---AT-TT-
1 AAAATTTGAAATCTTG
63352957 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
63352973 AAAATT
1 AAAATT
63352979 ATTCTAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
10 4 0.15
11 4 0.15
12 2 0.08
14 2 0.08
15 4 0.15
16 10 0.38
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:63352959 original size:26 final size:27
Alignment explanation
Indices: 63352930--63352986 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
63352920 AAGAATTAGA
63352930 TAAAATTTGAAATCTTGAAAATTATT-
1 TAAAATTTGAAATCTTGAAAATTATTC
63352956 TAAAATTTGAAATCTTGAAAATTATTC
1 TAAAATTTGAAATCTTGAAAATTATTC
63352983 TAAA
1 TAAA
63352987 CTTGAAAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (27 bp):
TAAAATTTGAAATCTTGAAAATTATTC
Found at i:63352991 original size:26 final size:26
Alignment explanation
Indices: 63352930--63352993 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
63352920 AAGAATTAGA
*
63352930 TAAAATTTGAAATCTTGAAAATTATT
1 TAAAACTTGAAATCTTGAAAATTATT
*
63352956 TAAAATTTGAAATCTTGAAAATTATT
1 TAAAACTTGAAATCTTGAAAATTATT
63352982 CT-AAACTTGAAA
1 -TAAAACTTGAAA
63352994 GCTTTAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 35 0.97
27 1 0.03
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (26 bp):
TAAAACTTGAAATCTTGAAAATTATT
Found at i:63353292 original size:15 final size:14
Alignment explanation
Indices: 63353241--63353289 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
63353231 TTTAAACCCC
63353241 AAACCATAAACCCTT
1 AAACCAT-AACCCTT
63353256 AAACCATAA---TT
1 AAACCATAACCCTT
63353267 -AACCACTAACCCTT
1 AAACCA-TAACCCTT
63353281 AAACCATAA
1 AAACCATAA
63353290 ACCAAAATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 11
0.73 0.00 0.28
Matches are distributed among these distances:
10 5 0.17
11 5 0.17
14 7 0.24
15 12 0.41
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (14 bp):
AAACCATAACCCTT
Found at i:63353342 original size:15 final size:15
Alignment explanation
Indices: 63353310--63353344 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
63353300 CTAAACGTTA
**
63353310 AAACCCATAATCTCT
1 AAACCCATAATCAAT
63353325 AAACCCATAATCAAT
1 AAACCCATAATCAAT
63353340 AAACC
1 AAACC
63353345 TTAAAACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (15 bp):
AAACCCATAATCAAT
Found at i:63353457 original size:22 final size:21
Alignment explanation
Indices: 63353432--63353486 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
63353422 CCCTATCCCT
63353432 TTAACCATTAAACCCATAACCC
1 TTAACC-TTAAACCCATAACCC
*
63353454 TTAATCCTTAAACCCATAATCC
1 TTAA-CCTTAAACCCATAACCC
*
63353476 ATAACCCTTAA
1 TTAA-CCTTAA
63353487 CCTTTACCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 27 0.93
23 2 0.07
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (21 bp):
TTAACCTTAAACCCATAACCC
Found at i:63353467 original size:15 final size:14
Alignment explanation
Indices: 63353448--63353507 Score: 59
Period size: 15 Copynumber: 4.2 Consensus size: 14
63353438 ATTAAACCCA
63353448 TAACCCTTAATCCT
1 TAACCCTTAATCCT
* *
63353462 TAAACCCATAATCCA
1 T-AACCCTTAATCCT
63353477 TAACCCTTAA-CCT
1 TAACCCTTAATCCT
* *
63353490 TTACCCACTAATCCT
1 TAACCC-TTAATCCT
63353505 TAA
1 TAA
63353508 ACTTTAAACC
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
13 7 0.19
14 12 0.33
15 17 0.47
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (14 bp):
TAACCCTTAATCCT
Found at i:63353550 original size:15 final size:16
Alignment explanation
Indices: 63353523--63353560 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
63353513 AAACCACAAC
63353523 CCCTAAA-ACCATAAT
1 CCCTAAACACCATAAT
63353538 CCCTAAACA-CATAAT
1 CCCTAAACACCATAAT
*
63353553 CTCTAAAC
1 CCCTAAAC
63353561 TTTAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 20 0.95
16 1 0.05
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (16 bp):
CCCTAAACACCATAAT
Found at i:63354113 original size:40 final size:40
Alignment explanation
Indices: 63354043--63354129 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
63354033 ATGGAAAACA
**
63354043 CCGCTAA-AGCTCAACCTATAGCGGTGTTTTTTAAAAAATG
1 CCGCTAATAGCTCAACCTATAGCGGCATTTTTT-AAAAATG
* * *
63354083 CCGCTAATA-CTCAACCTTTAGTGGCATTTTTTAGAAATG
1 CCGCTAATAGCTCAACCTATAGCGGCATTTTTTAAAAATG
*
63354122 CTGCTAAT
1 CCGCTAAT
63354130 GACACTAAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
39 13 0.32
40 26 0.65
41 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (40 bp):
CCGCTAATAGCTCAACCTATAGCGGCATTTTTTAAAAATG
Found at i:63354219 original size:154 final size:155
Alignment explanation
Indices: 63353909--63354245 Score: 349
Period size: 154 Copynumber: 2.2 Consensus size: 155
63353899 TATTTTTTTT
*
63353909 GGCGTTTTTATAACAAACGCCGCTAATACTAGACCTCTAGTGGCATTTTTATAAAAATGCCGCTA
1 GGCGTTTTT-TAAAAAACGCCGCTAATACTAGACCTCTAGTGGCATTTTTATAAAAATGCCGCTA
* *** ** * * *
63353974 ATGTCACTAAGGTTTAAAACAAAACGACGGTGTCTTGCTGATTTTTTTTGCGGCGTTTTATGGAA
65 ATGACACTAAGGGCCAAAACAAAACGACGGTGTCTTGCTGAAATTATTAGCGGCGTTTTATGAAA
*
63354039 AACACCGCTAAAGCTCAACCTATAGC
130 AACACCGCTAAAGCTCAACATATAGC
* * * * *
63354065 GGTGTTTTTTAAAAAATGCCGCTAATACTCA-ACCTTTAGTGGCATTTTT-TAGAAATGCTGCTA
1 GGCGTTTTTTAAAAAACGCCGCTAATACT-AGACCTCTAGTGGCATTTTTATAAAAATGCCGCTA
* ** *
63354128 ATGACACTAAGGGCCGAAAGGAAATGACGGTGTCTTGCTGAAATTATTAGCGGCGCTTTTAT-AA
65 ATGACACTAAGGGCCAAAACAAAACGACGGTGTCTTGCTGAAATTATTAGCGGCG-TTTTATGAA
** * * * *
63354192 AAACGTCTCTAAAGGTTGAGCAT-TAGC
129 AAACACCGCTAAA-GCTCAACATATAGC
* *
63354219 GGCGTTTTTTATAAAAGCGTCGCTAAT
1 GGCGTTTTTTA-AAAAACGCCGCTAAT
63354246 GCTCGATCTA
Statistics
Matches: 147, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
154 80 0.54
155 58 0.39
156 9 0.06
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31
Consensus pattern (155 bp):
GGCGTTTTTTAAAAAACGCCGCTAATACTAGACCTCTAGTGGCATTTTTATAAAAATGCCGCTAA
TGACACTAAGGGCCAAAACAAAACGACGGTGTCTTGCTGAAATTATTAGCGGCGTTTTATGAAAA
ACACCGCTAAAGCTCAACATATAGC
Found at i:63354260 original size:41 final size:40
Alignment explanation
Indices: 63354215--63354389 Score: 180
Period size: 41 Copynumber: 4.3 Consensus size: 40
63354205 GGTTGAGCAT
63354215 TAGCGGCGTTTTTTATAAAAGCGTCGCTAATGCTCGATCTA
1 TAGCGGCGTTTTTTA-AAAAGCGTCGCTAATGCTCGATCTA
* * *
63354256 TAGCGGTGCTTTTTATAAAAGCGCCGCTAATGCTCGATCTA
1 TAGCGGCGTTTTTTA-AAAAGCGTCGCTAATGCTCGATCTA
* * *
63354297 TAGCGGCGCTTTTCAAAAAACG-CTGCTAATG-TCTGATCTA
1 TAGCGGCGTTTTTTAAAAAGCGTC-GCTAATGCTC-GATCTA
* * *
63354337 TAGCGGCGTTTGCTTAAAAATGC-T-GCTAATGCT-GAGCTC
1 TAGCGGCGTTT-TTTAAAAA-GCGTCGCTAATGCTCGATCTA
63354376 TAGCGGCGTTTTTT
1 TAGCGGCGTTTTTT
63354390 GTACAAACGC
Statistics
Matches: 115, Mismatches: 13, Indels: 15
0.80 0.09 0.10
Matches are distributed among these distances:
38 2 0.02
39 18 0.16
40 36 0.31
41 58 0.50
42 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (40 bp):
TAGCGGCGTTTTTTAAAAAGCGTCGCTAATGCTCGATCTA
Found at i:63354336 original size:40 final size:40
Alignment explanation
Indices: 63354240--63354388 Score: 160
Period size: 40 Copynumber: 3.7 Consensus size: 40
63354230 TAAAAGCGTC
* * * *
63354240 GCTAATGCTCGATCTATAGCGGTGCTTTTTATAAAAGCGCC
1 GCTAATGCTCGATCTATAGCGGCGCTTTTCA-AAAAACGCT
63354281 GCTAATGCTCGATCTATAGCGGCGCTTTTCAAAAAACGCT
1 GCTAATGCTCGATCTATAGCGGCGCTTTTCAAAAAACGCT
* * *
63354321 GCTAATG-TCTGATCTATAGCGGCG-TTTGCTTAAAAATGCT
1 GCTAATGCTC-GATCTATAGCGGCGCTTTTC-AAAAAACGCT
* * *
63354361 GCTAATGCT-GAGCTCTAGCGGCGTTTTT
1 GCTAATGCTCGATCTATAGCGGCGCTTTT
63354389 TGTACAAACG
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 18 0.19
40 46 0.49
41 30 0.32
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (40 bp):
GCTAATGCTCGATCTATAGCGGCGCTTTTCAAAAAACGCT
Found at i:63356291 original size:31 final size:31
Alignment explanation
Indices: 63356253--63356331 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
63356243 TTTAACGATT
63356253 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
63356284 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
63356315 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
63356332 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:63356402 original size:42 final size:42
Alignment explanation
Indices: 63356355--63356446 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
63356345 TGGCCCATAG
* ** *
63356355 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
63356397 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
63356439 GCCCATTT
1 GCCCATTT
63356447 AGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:63356577 original size:26 final size:26
Alignment explanation
Indices: 63356532--63356680 Score: 248
Period size: 26 Copynumber: 5.8 Consensus size: 26
63356522 CCTCTTTAAT
63356532 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
63356557 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
63356583 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
63356609 AACTGGGGCATAAG-CCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
63356634 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
63356660 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
63356681 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
25 33 0.29
26 81 0.71
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:63356627 original size:51 final size:52
Alignment explanation
Indices: 63356532--63356680 Score: 284
Period size: 51 Copynumber: 2.9 Consensus size: 52
63356522 CCTCTTTAAT
63356532 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
63356583 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAG-CCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
63356634 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
63356681 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
51 61 0.64
52 35 0.36
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Done.