Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr14 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 244914714 ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31 Warning! 4503000 characters in sequence are not A, C, G, or T File 213 of 770 Found at i:63596625 original size:16 final size:17 Alignment explanation
Indices: 63596585--63596634 Score: 57 Period size: 16 Copynumber: 2.8 Consensus size: 17 63596575 TAGAATATTA 63596585 ATTCTATTATATATTTATCT 1 ATTCTATTATATA--TA-CT 63596605 ATTCTATTATATATA-T 1 ATTCTATTATATATACT * 63596621 ATTCTAATATATAT 1 ATTCTATTATATAT 63596635 TAGTATTATT Statistics Matches: 29, Mismatches: 1, Indels: 4 0.85 0.03 0.12 Matches are distributed among these distances: 16 14 0.48 18 2 0.07 20 13 0.45 ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56 Consensus pattern (17 bp): ATTCTATTATATATACT Found at i:63598388 original size:18 final size:18 Alignment explanation
Indices: 63598367--63598403 Score: 56 Period size: 18 Copynumber: 2.1 Consensus size: 18 63598357 AATTCGACGC * * 63598367 AGTGGATAAATTAGATAA 1 AGTGGAAAAATGAGATAA 63598385 AGTGGAAAAATGAGATAA 1 AGTGGAAAAATGAGATAA 63598403 A 1 A 63598404 CCAGCTTCAT Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22 Consensus pattern (18 bp): AGTGGAAAAATGAGATAA Found at i:63601278 original size:17 final size:17 Alignment explanation
Indices: 63601256--63601289 Score: 59 Period size: 17 Copynumber: 2.0 Consensus size: 17 63601246 ATAGATTCGC * 63601256 TTAGATATACTTAGTAT 1 TTAGATATAATTAGTAT 63601273 TTAGATATAATTAGTAT 1 TTAGATATAATTAGTAT 63601290 AATATACGAA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 17 16 1.00 ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47 Consensus pattern (17 bp): TTAGATATAATTAGTAT Found at i:63610302 original size:24 final size:25 Alignment explanation
Indices: 63610260--63610312 Score: 74 Period size: 24 Copynumber: 2.2 Consensus size: 25 63610250 TTTTCTTTCT 63610260 ATATTATTAATATTATTT-ATTTAA 1 ATATTATTAATATTATTTAATTTAA * 63610284 ATATTATTAATA-TATTTTAATTTAT 1 ATATTATTAATATTA-TTTAATTTAA 63610309 ATAT 1 ATAT 63610313 ATTTAAATTA Statistics Matches: 26, Mismatches: 1, Indels: 3 0.87 0.03 0.10 Matches are distributed among these distances: 23 2 0.08 24 15 0.58 25 9 0.35 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (25 bp): ATATTATTAATATTATTTAATTTAA Found at i:63610315 original size:24 final size:23 Alignment explanation
Indices: 63610259--63610328 Score: 65 Period size: 24 Copynumber: 3.0 Consensus size: 23 63610249 ATTTTCTTTC 63610259 TATAT-TATTAATATTATTTATT 1 TATATATATTAATATTATTTATT * 63610281 TAAATATTATTAATA-TATTTTAATT 1 TATATA-TATTAATATTA-TTT-ATT * 63610306 TATATATATTTAA-ATTATATATT 1 TATATATA-TTAATATTATTTATT 63610329 GAAATGATAA Statistics Matches: 39, Mismatches: 3, Indels: 11 0.74 0.06 0.21 Matches are distributed among these distances: 22 4 0.10 23 5 0.13 24 16 0.41 25 14 0.36 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (23 bp): TATATATATTAATATTATTTATT Found at i:63610323 original size:15 final size:14 Alignment explanation
Indices: 63610293--63610328 Score: 54 Period size: 15 Copynumber: 2.5 Consensus size: 14 63610283 AATATTATTA * 63610293 ATATATTTTAATTT 1 ATATATTTTAAATT 63610307 ATATATATTTAAATT 1 ATATAT-TTTAAATT 63610322 ATATATT 1 ATATATT 63610329 GAAATGATAA Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 14 7 0.35 15 13 0.65 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (14 bp): ATATATTTTAAATT Found at i:63610540 original size:21 final size:21 Alignment explanation
Indices: 63610500--63610538 Score: 71 Period size: 21 Copynumber: 1.9 Consensus size: 21 63610490 AAATCATGGA 63610500 TAAATCCAAGCGACTCTTTCT 1 TAAATCCAAGCGACTCTTTCT 63610521 TAAATCCAAGCGA-TCTTT 1 TAAATCCAAGCGACTCTTT 63610539 TCGTAGGCGT Statistics Matches: 18, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 20 5 0.28 21 13 0.72 ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33 Consensus pattern (21 bp): TAAATCCAAGCGACTCTTTCT Found at i:63613082 original size:12 final size:12 Alignment explanation
Indices: 63613065--63613089 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 63613055 ATTTTATAAC 63613065 ATAAATATTGTT 1 ATAAATATTGTT 63613077 ATAAATATTGTT 1 ATAAATATTGTT 63613089 A 1 A 63613090 ATAGCCTCTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48 Consensus pattern (12 bp): ATAAATATTGTT Found at i:63624848 original size:13 final size:15 Alignment explanation
Indices: 63624822--63624861 Score: 66 Period size: 13 Copynumber: 2.8 Consensus size: 15 63624812 CCTTAATTTA 63624822 TTAATATTTATTAAT 1 TTAATATTTATTAAT 63624837 TTAAT-TTT-TTAAT 1 TTAATATTTATTAAT 63624850 TTAATATTTATT 1 TTAATATTTATT 63624862 TAATAAAATA Statistics Matches: 23, Mismatches: 0, Indels: 4 0.85 0.00 0.15 Matches are distributed among these distances: 13 10 0.43 14 6 0.26 15 7 0.30 ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65 Consensus pattern (15 bp): TTAATATTTATTAAT Found at i:63627648 original size:14 final size:14 Alignment explanation
Indices: 63627629--63627657 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 63627619 ACAGATGGAT 63627629 TCGTATAATTCTTA 1 TCGTATAATTCTTA 63627643 TCGTATAATTCTTA 1 TCGTATAATTCTTA 63627657 T 1 T 63627658 ATATATTGTA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52 Consensus pattern (14 bp): TCGTATAATTCTTA Found at i:63631890 original size:20 final size:21 Alignment explanation
Indices: 63631824--63631892 Score: 95 Period size: 21 Copynumber: 3.3 Consensus size: 21 63631814 TCACTTCGTT 63631824 TCTTTTTGTCCAAGTTACTTC 1 TCTTTTTGTCCAAGTTACTTC * 63631845 TCTTTTTGTCCAAGTTGCTTC 1 TCTTTTTGTCCAAGTTACTTC * * * 63631866 TCTTTTTGTCTAACTCACTTC 1 TCTTTTTGTCCAAGTTACTTC 63631887 -CTTTTT 1 TCTTTTT 63631893 TCTTTGTGAG Statistics Matches: 43, Mismatches: 5, Indels: 1 0.88 0.10 0.02 Matches are distributed among these distances: 20 6 0.14 21 37 0.86 ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55 Consensus pattern (21 bp): TCTTTTTGTCCAAGTTACTTC Found at i:63634291 original size:18 final size:18 Alignment explanation
Indices: 63634258--63634351 Score: 131 Period size: 18 Copynumber: 5.4 Consensus size: 18 63634248 AAGGTTTTCT 63634258 TATTGATGATA-T--CGA 1 TATTGATGATAGTGACGA 63634273 TATTGATGATAGTGACGA 1 TATTGATGATAGTGACGA * 63634291 TATTGATGCTAGTGACGA 1 TATTGATGATAGTGACGA * * 63634309 TATTGATGCTAGTGACGC 1 TATTGATGATAGTGACGA * 63634327 TATTGATGATAGTGACGC 1 TATTGATGATAGTGACGA 63634345 TATTGAT 1 TATTGAT 63634352 CGTGACCTTG Statistics Matches: 73, Mismatches: 3, Indels: 3 0.92 0.04 0.04 Matches are distributed among these distances: 15 11 0.15 16 1 0.01 18 61 0.84 ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36 Consensus pattern (18 bp): TATTGATGATAGTGACGA Found at i:63642617 original size:14 final size:14 Alignment explanation
Indices: 63642598--63642625 Score: 56 Period size: 14 Copynumber: 2.0 Consensus size: 14 63642588 TATATTAGTA 63642598 TTTTCTATTCTATT 1 TTTTCTATTCTATT 63642612 TTTTCTATTCTATT 1 TTTTCTATTCTATT 63642626 AGTATTAGAG Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71 Consensus pattern (14 bp): TTTTCTATTCTATT Found at i:63642633 original size:6 final size:6 Alignment explanation
Indices: 63642622--63642700 Score: 66 Period size: 5 Copynumber: 14.2 Consensus size: 6 63642612 TTTTCTATTC * * 63642622 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG 1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG 63642669 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T 1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T 63642701 TAGTGATCCC Statistics Matches: 64, Mismatches: 2, Indels: 14 0.80 0.03 0.17 Matches are distributed among these distances: 4 4 0.06 5 28 0.44 6 26 0.41 8 6 0.09 ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48 Consensus pattern (6 bp): TATTAG Found at i:63642648 original size:11 final size:11 Alignment explanation
Indices: 63642623--63642704 Score: 50 Period size: 11 Copynumber: 7.5 Consensus size: 11 63642613 TTTCTATTCT 63642623 ATTAGTATTAG 1 ATTAGTATTAG 63642634 ---AGTATTAG 1 ATTAGTATTAG ** 63642642 ATTAGTATTCT 1 ATTAGTATTAG * 63642653 ATT-CTATTAG 1 ATTAGTATTAG 63642663 TATTAG-ATTAG 1 -ATTAGTATTAG 63642674 TATTAGTTAGATTAG 1 -ATTAG-T--ATTAG 63642689 ATTAGTATTAG 1 ATTAGTATTAG 63642700 -TTAGT 1 ATTAGT 63642705 GATCCCGGCT Statistics Matches: 56, Mismatches: 6, Indels: 19 0.69 0.07 0.23 Matches are distributed among these distances: 8 8 0.14 10 9 0.16 11 28 0.50 13 1 0.02 14 5 0.09 15 5 0.09 ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48 Consensus pattern (11 bp): ATTAGTATTAG Found at i:63642689 original size:20 final size:21 Alignment explanation
Indices: 63642659--63642704 Score: 85 Period size: 20 Copynumber: 2.2 Consensus size: 21 63642649 TTCTATTCTA 63642659 TTAGTATTAGATTAGTATTAG 1 TTAGTATTAGATTAGTATTAG 63642680 TTAG-ATTAGATTAGTATTAG 1 TTAGTATTAGATTAGTATTAG 63642700 TTAGT 1 TTAGT 63642705 GATCCCGGCT Statistics Matches: 24, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 20 20 0.83 21 4 0.17 ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48 Consensus pattern (21 bp): TTAGTATTAGATTAGTATTAG Found at i:63650918 original size:32 final size:32 Alignment explanation
Indices: 63650877--63650938 Score: 115 Period size: 32 Copynumber: 1.9 Consensus size: 32 63650867 CATCTATTTT 63650877 CATTGTTCAACTCTTTGACAACACGAAAAATC 1 CATTGTTCAACTCTTTGACAACACGAAAAATC * 63650909 CATTGTTCAACTCTTTGACAACATGAAAAA 1 CATTGTTCAACTCTTTGACAACACGAAAAA 63650939 ACCAAAAGCT Statistics Matches: 29, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 29 1.00 ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29 Consensus pattern (32 bp): CATTGTTCAACTCTTTGACAACACGAAAAATC Found at i:63655082 original size:22 final size:22 Alignment explanation
Indices: 63655056--63655099 Score: 88 Period size: 22 Copynumber: 2.0 Consensus size: 22 63655046 TTATCTCTTT 63655056 TGATTGAAAAGGAGCAATAAAA 1 TGATTGAAAAGGAGCAATAAAA 63655078 TGATTGAAAAGGAGCAATAAAA 1 TGATTGAAAAGGAGCAATAAAA 63655100 AAATCGAGAG Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 22 22 1.00 ACGTcount: A:0.55, C:0.05, G:0.23, T:0.18 Consensus pattern (22 bp): TGATTGAAAAGGAGCAATAAAA Found at i:63657356 original size:21 final size:21 Alignment explanation
Indices: 63657332--63657375 Score: 54 Period size: 21 Copynumber: 2.1 Consensus size: 21 63657322 ACGACCTAAT * 63657332 TAAATAGAAAGGATA-ATTAAA 1 TAAATA-AAAGGATACAATAAA * 63657353 TAAATAAAATGATACAATAAA 1 TAAATAAAAGGATACAATAAA 63657374 TA 1 TA 63657376 CTAAAGATTC Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 20 7 0.35 21 13 0.65 ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25 Consensus pattern (21 bp): TAAATAAAAGGATACAATAAA Found at i:63667298 original size:13 final size:13 Alignment explanation
Indices: 63667280--63667307 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 63667270 AATATAGGGG 63667280 AAAATGTACCATT 1 AAAATGTACCATT 63667293 AAAATGTACCATT 1 AAAATGTACCATT 63667306 AA 1 AA 63667308 CGAATTTTCA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29 Consensus pattern (13 bp): AAAATGTACCATT Found at i:63674639 original size:32 final size:32 Alignment explanation
Indices: 63674603--63674664 Score: 115 Period size: 32 Copynumber: 1.9 Consensus size: 32 63674593 AGCTTTTGGT 63674603 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA 1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA * 63674635 TTTTTCGTGTTGTCAAAGAGTTGAACAATG 1 TTTTTCATGTTGTCAAAGAGTTGAACAATG 63674665 AAAATAGATG Statistics Matches: 29, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 29 1.00 ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39 Consensus pattern (32 bp): TTTTTCATGTTGTCAAAGAGTTGAACAATGGA Found at i:63682850 original size:6 final size:6 Alignment explanation
Indices: 63682839--63682917 Score: 66 Period size: 5 Copynumber: 14.2 Consensus size: 6 63682829 GGGATCACTA 63682839 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT 1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT * * 63682882 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A 1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A 63682918 GAATAGAAAA Statistics Matches: 63, Mismatches: 2, Indels: 16 0.78 0.02 0.20 Matches are distributed among these distances: 4 3 0.05 5 27 0.43 6 27 0.43 8 6 0.10 ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33 Consensus pattern (6 bp): ACTAAT Found at i:63682861 original size:20 final size:21 Alignment explanation
Indices: 63682835--63682880 Score: 85 Period size: 20 Copynumber: 2.2 Consensus size: 21 63682825 AGCCGGGATC 63682835 ACTAACTAATACTAATCTAAT 1 ACTAACTAATACTAATCTAAT 63682856 -CTAACTAATACTAATCTAAT 1 ACTAACTAATACTAATCTAAT 63682876 ACTAA 1 ACTAA 63682881 TAGAATAGAA Statistics Matches: 24, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 20 20 0.83 21 4 0.17 ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33 Consensus pattern (21 bp): ACTAACTAATACTAATCTAAT Found at i:63682905 original size:11 final size:11 Alignment explanation
Indices: 63682835--63682881 Score: 73 Period size: 11 Copynumber: 4.5 Consensus size: 11 63682825 AGCCGGGATC 63682835 ACTAA-CTAAT 1 ACTAATCTAAT 63682845 ACTAATCTAAT 1 ACTAATCTAAT 63682856 -CTAA-CTAAT 1 ACTAATCTAAT 63682865 ACTAATCTAAT 1 ACTAATCTAAT 63682876 ACTAAT 1 ACTAAT 63682882 AGAATAGAAT Statistics Matches: 34, Mismatches: 0, Indels: 5 0.87 0.00 0.13 Matches are distributed among these distances: 9 5 0.15 10 13 0.38 11 16 0.47 ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34 Consensus pattern (11 bp): ACTAATCTAAT Found at i:63682931 original size:14 final size:14 Alignment explanation
Indices: 63682914--63682941 Score: 56 Period size: 14 Copynumber: 2.0 Consensus size: 14 63682904 CTCTAATACT 63682914 AATAGAATAGAAAA 1 AATAGAATAGAAAA 63682928 AATAGAATAGAAAA 1 AATAGAATAGAAAA 63682942 TACTAATATA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14 Consensus pattern (14 bp): AATAGAATAGAAAA Found at i:63690230 original size:40 final size:40 Alignment explanation
Indices: 63690171--63690312 Score: 124 Period size: 40 Copynumber: 3.5 Consensus size: 40 63690161 AAATTGAATG * * * 63690171 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT * * * *** 63690211 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT * * * ** * 63690251 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT 1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT * 63690291 CTATCCGGGCTAAGACCCGAAG 1 ATATCCGGGCTAAGACCCGAAG 63690313 GCATTTGTGC Statistics Matches: 86, Mismatches: 15, Indels: 2 0.83 0.15 0.02 Matches are distributed among these distances: 39 3 0.03 40 83 0.97 ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT Found at i:63690336 original size:40 final size:39 Alignment explanation
Indices: 63690209--63690338 Score: 147 Period size: 40 Copynumber: 3.3 Consensus size: 39 63690199 ATGCTGGAAA * * * 63690209 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC 1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC * * 63690250 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC 1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C * 63690288 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC 1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC 63690329 TTATATCCGG 1 TTATATCCGG 63690339 TTATATTCCG Statistics Matches: 75, Mismatches: 9, Indels: 11 0.79 0.09 0.12 Matches are distributed among these distances: 37 1 0.01 38 1 0.01 40 70 0.93 41 2 0.03 42 1 0.01 ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25 Consensus pattern (39 bp): TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC Found at i:63694846 original size:27 final size:27 Alignment explanation
Indices: 63694791--63694901 Score: 145 Period size: 27 Copynumber: 4.1 Consensus size: 27 63694781 AGCATGGCTG * * 63694791 CCAGAACAGATAA-TGTGACAGAGTCA 1 CCAGAACAGATAATTGTGGCAGAGCCA * 63694817 CCAGAACAGATAATTGTGGCAGAGCTA 1 CCAGAACAGATAATTGTGGCAGAGCCA 63694844 CCAGAACAGAT-ATATGTGGCAGAGCCA 1 CCAGAACAGATAAT-TGTGGCAGAGCCA * * * 63694871 CCAGATCAGATAAATGTGGCATAGCCA 1 CCAGAACAGATAATTGTGGCAGAGCCA 63694898 CCAG 1 CCAG 63694902 GACGCTTCCT Statistics Matches: 75, Mismatches: 7, Indels: 5 0.86 0.08 0.06 Matches are distributed among these distances: 26 15 0.20 27 59 0.79 28 1 0.01 ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16 Consensus pattern (27 bp): CCAGAACAGATAATTGTGGCAGAGCCA Found at i:63695339 original size:16 final size:16 Alignment explanation
Indices: 63695317--63695357 Score: 64 Period size: 16 Copynumber: 2.6 Consensus size: 16 63695307 CTCAAAATAC 63695317 CGGCTTTTCGACATTT 1 CGGCTTTTCGACATTT * * 63695333 TGGCTTTTCGGCATTT 1 CGGCTTTTCGACATTT 63695349 CGGCTTTTC 1 CGGCTTTTC 63695358 AGCTTTTGCC Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 16 22 1.00 ACGTcount: A:0.07, C:0.24, G:0.22, T:0.46 Consensus pattern (16 bp): CGGCTTTTCGACATTT Found at i:63695351 original size:8 final size:8 Alignment explanation
Indices: 63695317--63695364 Score: 53 Period size: 8 Copynumber: 6.0 Consensus size: 8 63695307 CTCAAAATAC 63695317 CGGCTTTT 1 CGGCTTTT * 63695325 CGACATTTT 1 CGGC-TTTT 63695334 -GGCTTTT 1 CGGCTTTT * 63695341 CGGCATTT 1 CGGCTTTT 63695349 CGGCTTTT 1 CGGCTTTT * 63695357 CAGCTTTT 1 CGGCTTTT 63695365 GCCGATTTAG Statistics Matches: 33, Mismatches: 5, Indels: 4 0.79 0.12 0.10 Matches are distributed among these distances: 7 4 0.12 8 25 0.76 9 4 0.12 ACGTcount: A:0.08, C:0.23, G:0.21, T:0.48 Consensus pattern (8 bp): CGGCTTTT Found at i:63696383 original size:24 final size:25 Alignment explanation
Indices: 63696325--63696376 Score: 88 Period size: 25 Copynumber: 2.1 Consensus size: 25 63696315 TTGCTCATTG * 63696325 ATCAACTCCTAAATCTTCTCCCCTT 1 ATCAGCTCCTAAATCTTCTCCCCTT 63696350 ATCAGCTCCTAAATCTTCT-CCCTT 1 ATCAGCTCCTAAATCTTCTCCCCTT 63696374 ATC 1 ATC 63696377 CTCTCCTTAC Statistics Matches: 26, Mismatches: 1, Indels: 1 0.93 0.04 0.04 Matches are distributed among these distances: 24 8 0.31 25 18 0.69 ACGTcount: A:0.23, C:0.38, G:0.02, T:0.37 Consensus pattern (25 bp): ATCAGCTCCTAAATCTTCTCCCCTT Found at i:63699427 original size:24 final size:24 Alignment explanation
Indices: 63699393--63699442 Score: 82 Period size: 24 Copynumber: 2.1 Consensus size: 24 63699383 AATGATGTAT * 63699393 AATGTCTCCCTTATATGTAACCGA 1 AATGTCCCCCTTATATGTAACCGA * 63699417 AATGTCCCCCTTGTATGTAACCGA 1 AATGTCCCCCTTATATGTAACCGA 63699441 AA 1 AA 63699443 ATCACTTGAA Statistics Matches: 24, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 24 24 1.00 ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30 Consensus pattern (24 bp): AATGTCCCCCTTATATGTAACCGA Found at i:63702899 original size:14 final size:15 Alignment explanation
Indices: 63702882--63702910 Score: 51 Period size: 14 Copynumber: 2.0 Consensus size: 15 63702872 TCACGAAAAT 63702882 TTCACACAT-ATAAA 1 TTCACACATAATAAA 63702896 TTCACACATAATAAA 1 TTCACACATAATAAA 63702911 CATAGAAAAT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 14 9 0.64 15 5 0.36 ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28 Consensus pattern (15 bp): TTCACACATAATAAA Found at i:63704126 original size:28 final size:28 Alignment explanation
Indices: 63704061--63704161 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63704051 ATAGTGAATC * 63704061 CGCACACTTAGTGCTATATGTATTC-AACT 1 CGCACACTTAGTGCTATA--TAATCAAACT 63704090 CGCACACTTAGTGCTATATAATCAAACT 1 CGCACACTTAGTGCTATATAATCAAACT * * * * 63704118 CGCACACTTAGTGCTGTACAATTTTAAACC 1 CGCACACTTAGTGCTATATAA--TCAAACT 63704148 CGCACACTTAGTGC 1 CGCACACTTAGTGC 63704162 CAATCTTGTC Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 4 0.06 28 23 0.36 29 18 0.28 30 19 0.30 ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30 Consensus pattern (28 bp): CGCACACTTAGTGCTATATAATCAAACT Found at i:63708899 original size:24 final size:24 Alignment explanation
Indices: 63708867--63709049 Score: 258 Period size: 24 Copynumber: 7.6 Consensus size: 24 63708857 TATCTCAAAT 63708867 GCACTATGTGTGCGATTTACTATG 1 GCACTATGTGTGCGATTTACTATG * 63708891 GCACTATGTGTGCGATTCACTATG 1 GCACTATGTGTGCGATTTACTATG * 63708915 GCACTATGTGTGCGATTCACTATG 1 GCACTATGTGTGCGATTTACTATG 63708939 GCACTATGTGTGCGATTTACTATG 1 GCACTATGTGTGCGATTTACTATG * * * 63708963 GCACTAAGTGTGCGATTTATTATA 1 GCACTATGTGTGCGATTTACTATG * * * 63708987 GCACTACGTGTGCGATTTGCTATA 1 GCACTATGTGTGCGATTTACTATG * * * 63709011 GCACTATGTGCGCGATTTGCTATA 1 GCACTATGTGTGCGATTTACTATG * 63709035 GCTCTATGTGTGCGA 1 GCACTATGTGTGCGA 63709050 ACATAATAAG Statistics Matches: 147, Mismatches: 12, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 24 147 1.00 ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35 Consensus pattern (24 bp): GCACTATGTGTGCGATTTACTATG Found at i:63709062 original size:72 final size:72 Alignment explanation
Indices: 63708867--63709071 Score: 236 Period size: 72 Copynumber: 2.8 Consensus size: 72 63708857 TATCTCAAAT * * 63708867 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACT-AT-GGCACTATGTGTGCGA 1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATAAGCACTATGTGTGCGA * 63708930 TTCACTATG 64 TTCACTATA * ** * * 63708939 GCACTATGTGTGCGATTTACTATGGCACTAAGTGTGCG-ATTTATTATAGCACTACGTGTGCGAT 1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTGCGAT ** 63709003 TTGCTATA 65 TCACTATA * * * * 63709011 GCACTATGTGCGCGATTTGCTATAGCTCTATGTGTGCGAACATAATAAGCACTATGTGTGC 1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAAGCACTATGTGTGC 63709072 CACATTCGGT Statistics Matches: 110, Mismatches: 19, Indels: 8 0.80 0.14 0.06 Matches are distributed among these distances: 69 1 0.01 70 1 0.01 72 103 0.94 73 5 0.05 ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34 Consensus pattern (72 bp): GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAAGCACTATGTGTGCGATT CACTATA Found at i:63714045 original size:28 final size:28 Alignment explanation
Indices: 63713980--63714080 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63713970 ATAGTGAATC * 63713980 CGCACACTTAGTGCTATATGTATTC-AACT 1 CGCACACTTAGTGCTATA--TAATCAAACT 63714009 CGCACACTTAGTGCTATATAATCAAACT 1 CGCACACTTAGTGCTATATAATCAAACT * * * * 63714037 CGCACACTTAGTGCTGTACAATTTTAAACC 1 CGCACACTTAGTGCTATATAA--TCAAACT 63714067 CGCACACTTAGTGC 1 CGCACACTTAGTGC 63714081 CAATCTTGTC Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 4 0.06 28 23 0.36 29 18 0.28 30 19 0.30 ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30 Consensus pattern (28 bp): CGCACACTTAGTGCTATATAATCAAACT Found at i:63717290 original size:18 final size:19 Alignment explanation
Indices: 63717243--63717294 Score: 72 Period size: 18 Copynumber: 2.8 Consensus size: 19 63717233 TTTCTTAGAC 63717243 ACTTTCTTTTCTTTCTTCA 1 ACTTTCTTTTCTTTCTTCA * 63717262 A-TCTCTCTTTCTTT-TTCA 1 ACTTTCT-TTTCTTTCTTCA 63717280 ACTTTCTTTTCTTTC 1 ACTTTCTTTTCTTTC 63717295 ACACATGATT Statistics Matches: 28, Mismatches: 2, Indels: 6 0.78 0.06 0.17 Matches are distributed among these distances: 18 16 0.57 19 12 0.43 ACGTcount: A:0.10, C:0.27, G:0.00, T:0.63 Consensus pattern (19 bp): ACTTTCTTTTCTTTCTTCA Found at i:63717388 original size:22 final size:22 Alignment explanation
Indices: 63717360--63717415 Score: 60 Period size: 21 Copynumber: 2.5 Consensus size: 22 63717350 TTTTATTTCC * 63717360 TTTTCTTTTCTTCCATGTCTTT 1 TTTTCTTTTCTTCAATGTCTTT * * 63717382 TTTTCTTCTC-TCAATTTCTTT 1 TTTTCTTTTCTTCAATGTCTTT * 63717403 TTCTCATTTTCTT 1 TTTTC-TTTTCTT 63717416 TCATTACAAG Statistics Matches: 27, Mismatches: 5, Indels: 3 0.77 0.14 0.09 Matches are distributed among these distances: 21 13 0.48 22 13 0.48 23 1 0.04 ACGTcount: A:0.07, C:0.23, G:0.02, T:0.68 Consensus pattern (22 bp): TTTTCTTTTCTTCAATGTCTTT Found at i:63730102 original size:23 final size:24 Alignment explanation
Indices: 63730067--63730111 Score: 83 Period size: 23 Copynumber: 1.9 Consensus size: 24 63730057 AATGATGTAT 63730067 AATGTCTCCCTTGTATGTAACCGA 1 AATGTCTCCCTTGTATGTAACCGA 63730091 AATGTC-CCCTTGTATGTAACC 1 AATGTCTCCCTTGTATGTAACC 63730112 AAAAATCACT Statistics Matches: 21, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 23 15 0.71 24 6 0.29 ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33 Consensus pattern (24 bp): AATGTCTCCCTTGTATGTAACCGA Found at i:63730414 original size:52 final size:51 Alignment explanation
Indices: 63730323--63730466 Score: 145 Period size: 52 Copynumber: 2.8 Consensus size: 51 63730313 TAATGCATGG * ** 63730323 TTTACAATGCAAAC-TAAA-TAAACAT-ATGAGTTATTTAATGCAAGAC-TTAA 1 TTTATAATGCAAACTTAAACT-AACATGA-GAGTTACATAATGCAAGACATT-A * * 63730373 TTTAATAATGCAAACTTAAACTAACATGGGAGTTACATAATGCAAGTCATTA 1 TTT-ATAATGCAAACTTAAACTAACATGAGAGTTACATAATGCAAGACATTA * * * 63730425 TTTATGATGCATACTT-AACTAACATGAAAGTTACATAATGCA 1 TTTATAATGCAAACTTAAACTAACATGAGAGTTACATAATGCA 63730467 TTACTTTATT Statistics Matches: 80, Mismatches: 9, Indels: 10 0.81 0.09 0.10 Matches are distributed among these distances: 50 27 0.34 51 21 0.26 52 29 0.36 53 3 0.04 ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32 Consensus pattern (51 bp): TTTATAATGCAAACTTAAACTAACATGAGAGTTACATAATGCAAGACATTA Found at i:63730459 original size:50 final size:52 Alignment explanation
Indices: 63730358--63730466 Score: 143 Period size: 50 Copynumber: 2.1 Consensus size: 52 63730348 ATGAGTTATT ** 63730358 TAATGCAAGACTTAATTTAATAATGCAAACTTAAACTAACATGGGAGTTACA 1 TAATGCAAGACTTAATTTAATAATGCAAACTTAAACTAACATGAAAGTTACA * * * 63730410 TAATGCAAGTCATT-ATTT-ATGATGCATACTT-AACTAACATGAAAGTTACA 1 TAATGCAAGAC-TTAATTTAATAATGCAAACTTAAACTAACATGAAAGTTACA 63730460 TAATGCA 1 TAATGCA 63730467 TTACTTTATT Statistics Matches: 51, Mismatches: 5, Indels: 4 0.85 0.08 0.07 Matches are distributed among these distances: 50 24 0.47 51 11 0.22 52 14 0.27 53 2 0.04 ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31 Consensus pattern (52 bp): TAATGCAAGACTTAATTTAATAATGCAAACTTAAACTAACATGAAAGTTACA Found at i:63743816 original size:47 final size:47 Alignment explanation
Indices: 63743596--63744048 Score: 268 Period size: 46 Copynumber: 9.6 Consensus size: 47 63743586 TATTGTGAGA * * 63743596 TAGTGCAAGACATGTCTGGGACATGCATCGGCC-TCGAGAC-A-TAAGC 1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGAGT--GC * ** 63743642 CAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCAAGAC-A-TAAGC 1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGAGT--GC * ** 63743688 CAGTGTAAGACATGTCTGGGACATGCATCGGTTA-TGAGA-G-GTG- 1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGAGTGC * 63743731 TCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGAGACGAGTGC 1 T-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATTGAGACGAGTGC * * * 63743780 TAGTGTAAGAAATGTTTGGGACATGTATCGGCCATTGAGACGTAAG-GC 1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACG--AGTGC * ** * 63743828 -AGTGTAAGACATGTTTGGGACATGCATCGGGTA-CGAGA-G-GTGGC 1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGAGT-GC ** * * * 63743872 -AGTGTAAGACCATGTCTGGGACATGGCATCAACACAAAT-ATG-CTAGAGC 1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-ATTGA-GACGAGTGC * * * * * 63743921 TTGTGTAAGACCATGT-TCGGGACATGGCATCGACACA--GATATGCTAGAGC 1 TAGTGTAAGA-CATGTCT-GGGACAT-GCATCGGC-CATTGAGA--CGAGTGC * * 63743971 TTGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGATGAGTGC 1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATTGAGACGAGTGC * 63744019 TAGTGTAAGACATGTCTGGGATATGGCATC 1 TAGTGTAAGACATGTCTGGGACAT-GCATC 63744049 AGCAGCTGCA Statistics Matches: 338, Mismatches: 37, Indels: 63 0.77 0.08 0.14 Matches are distributed among these distances: 42 1 0.00 44 21 0.06 45 29 0.09 46 103 0.30 47 71 0.21 48 32 0.09 49 8 0.02 50 72 0.21 51 1 0.00 ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24 Consensus pattern (47 bp): TAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGAGTGC Found at i:63743866 original size:139 final size:137 Alignment explanation
Indices: 63743597--63743902 Score: 411 Period size: 139 Copynumber: 2.2 Consensus size: 137 63743587 ATTGTGAGAT * * * * 63743597 AGTGCAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGCCAGTGTAAGACATGTCTG 1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGACAT-AGCCAGTGTAAGAAATGTCTG * * 63743660 GGACATGCATCGGCCTCAAGACATAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGTTATGA 65 GGACATGCATCGGCCTCAAGACATAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGGTACGA * 63743725 GAGGTGTC 130 GAGGTGGC * * * 63743733 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGT-GCTAGTGTAAGAAATGTTT 1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGAC-A-TAGCCAGTGTAAGAAATGTCT * ** * * * 63743797 GGGACATGTATCGGCCATTGAGACGTAAGGCAGTGTAAGACATGTTTGGGACATGCATCGGGTAC 64 GGGACATGCATCGGCC-TCAAGACATAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGGTAC 63743862 GAGAGGTGGC 128 GAGAGGTGGC 63743872 AGTGTAAGACCATGTCTGGGACATGGCATCA 1 AGTGTAAGACCATGTCTGGGACATGGCATCA 63743903 ACACAAATAT Statistics Matches: 149, Mismatches: 16, Indels: 7 0.87 0.09 0.04 Matches are distributed among these distances: 136 8 0.05 137 14 0.09 138 44 0.30 139 82 0.55 140 1 0.01 ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23 Consensus pattern (137 bp): AGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGAGACATAGCCAGTGTAAGAAATGTCTGG GACATGCATCGGCCTCAAGACATAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGGTACGAG AGGTGGC Found at i:63744002 original size:50 final size:50 Alignment explanation
Indices: 63743873--63744048 Score: 234 Period size: 50 Copynumber: 3.6 Consensus size: 50 63743863 AGAGGTGGCA * * 63743873 GTGTAAGACCATGTCTGGGACATGGCATCAACACAAATATGCTAGAGCTT 1 GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCTAGAGCTT 63743923 GTGTAAGACCATGT-TCGGGACATGGCATCGACACAGATATGCTAGAGCTT 1 GTGTAAGACCATGTCT-GGGACATGGCATCGACACAGATATGCTAGAGCTT * ** * * * 63743973 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATG--AGTGCTA 1 GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCTAGAGCTT * 63744021 GTGTAAGA-CATGTCTGGGATATGGCATC 1 GTGTAAGACCATGTCTGGGACATGGCATC 63744049 AGCAGCTGCA Statistics Matches: 115, Mismatches: 9, Indels: 7 0.88 0.07 0.05 Matches are distributed among these distances: 47 19 0.17 48 13 0.11 49 1 0.01 50 81 0.70 51 1 0.01 ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25 Consensus pattern (50 bp): GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCTAGAGCTT Found at i:63747573 original size:41 final size:40 Alignment explanation
Indices: 63747419--63747584 Score: 197 Period size: 40 Copynumber: 4.1 Consensus size: 40 63747409 TGGGACATTT * * * * * * 63747419 CCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAG 1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA * * 63747459 CCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAA 1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA * 63747499 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAA 1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA * * * * * 63747539 CCAGGTTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG 1 CCCGGTTTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAA 63747580 CCCGG 1 CCCGG 63747585 ATACCATTCG Statistics Matches: 107, Mismatches: 18, Indels: 1 0.85 0.14 0.01 Matches are distributed among these distances: 40 81 0.76 41 26 0.24 ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27 Consensus pattern (40 bp): CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA Found at i:63755658 original size:40 final size:40 Alignment explanation
Indices: 63755557--63755715 Score: 198 Period size: 40 Copynumber: 4.0 Consensus size: 40 63755547 TGATAACCGA * * * 63755557 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTCGG 1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGG * * 63755597 GCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATATCCGG 1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG * 63755636 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG 1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG * * * 63755676 GCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCCGG 1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG 63755716 TTGAATTCCG Statistics Matches: 104, Mismatches: 12, Indels: 6 0.85 0.10 0.05 Matches are distributed among these distances: 39 34 0.33 40 70 0.67 ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26 Consensus pattern (40 bp): GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG Found at i:63761550 original size:39 final size:39 Alignment explanation
Indices: 63761429--63761621 Score: 183 Period size: 40 Copynumber: 4.8 Consensus size: 39 63761419 GGATATAGCT * * * * * 63761429 ACTCGCTCAAATGCCTTTGGGACATAGGCCGG-TTATAGTA 1 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTA * * * 63761469 ACTCGCACAAATGCCTTCTGGACTTAACCCGGATTTAGTA 1 ACTCGCACAAATGCCTTC-GGGCTTAGCCCGGAATTAGTA * 63761509 ACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTA 1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTA * * * 63761548 ACTCGCACAAATGCCTTCGGATCTTAGTCCGG-ATATAGTC 1 ACTCGCACAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTA * * 63761588 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA 1 AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA 63761622 TATCATTCGA Statistics Matches: 128, Mismatches: 18, Indels: 12 0.81 0.11 0.08 Matches are distributed among these distances: 39 39 0.30 40 60 0.47 41 29 0.23 ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25 Consensus pattern (39 bp): ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTA Found at i:63761551 original size:79 final size:81 Alignment explanation
Indices: 63761464--63761621 Score: 223 Period size: 79 Copynumber: 2.0 Consensus size: 81 63761454 AGGCCGGTTA * * * * 63761464 TAGTAACTCGCACAAATGCCTTCTGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTC 1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTC 63761527 GGG-CTTAGCCCGGAAT 65 GGGACTTAGCCCGGAAT ** * 63761543 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCG 1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTCG 63761608 GGACTTAGCCCGGA 66 GGACTTAGCCCGGA 63761622 TATCATTCGA Statistics Matches: 69, Mismatches: 7, Indels: 4 0.86 0.09 0.05 Matches are distributed among these distances: 78 3 0.04 79 39 0.57 80 16 0.23 81 11 0.16 ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25 Consensus pattern (81 bp): TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAAGCCTTCG GGACTTAGCCCGGAAT Found at i:63770649 original size:19 final size:19 Alignment explanation
Indices: 63770612--63770649 Score: 51 Period size: 19 Copynumber: 2.0 Consensus size: 19 63770602 ACCTGTCAGA * 63770612 AGAAAATAAATGAAGAATT 1 AGAAAATAAATGAAAAATT 63770631 AGAAAATAAAAT-AAAAATT 1 AGAAAAT-AAATGAAAAATT 63770650 TAAATTGAAA Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 19 13 0.76 20 4 0.24 ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21 Consensus pattern (19 bp): AGAAAATAAATGAAAAATT Found at i:63773822 original size:27 final size:27 Alignment explanation
Indices: 63773793--63774005 Score: 182 Period size: 27 Copynumber: 7.9 Consensus size: 27 63773783 TACCCTACAG * * 63773793 GGGTATTTTAGTAAATTTACAAACTGG 1 GGGTATTTTAGTAATTTTACAAACTGA * * * * 63773820 GGGTATTTCAATAATTTTACAAATTGG 1 GGGTATTTTAGTAATTTTACAAACTGA * * * 63773847 GGGTATTTTAGAAATTTTA-TAATTCGA 1 GGGTATTTTAGTAATTTTACAAACT-GA * * 63773874 GGGTATTTT-GATAATTTTACAATCCGA 1 GGGTATTTTAG-TAATTTTACAAACTGA ** * * 63773901 GGGTATTTCGGTAATTTTATAAACCGA 1 GGGTATTTTAGTAATTTTACAAACTGA * * * 63773928 GGGTATTTTGGTAATTTTACAAATTCA 1 GGGTATTTTAGTAATTTTACAAACTGA * 63773955 GGGTA-TTTCGATAATTTTACAAA-TCGA 1 GGGTATTTTAG-TAATTTTACAAACT-GA * 63773982 GGGTATTTCAGTAATTTTACAAAC 1 GGGTATTTTAGTAATTTTACAAAC 63774006 CAGGGTCTAA Statistics Matches: 152, Mismatches: 26, Indels: 15 0.79 0.13 0.08 Matches are distributed among these distances: 26 10 0.07 27 137 0.90 28 5 0.03 ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40 Consensus pattern (27 bp): GGGTATTTTAGTAATTTTACAAACTGA Found at i:63773893 original size:81 final size:81 Alignment explanation
Indices: 63773793--63774011 Score: 257 Period size: 81 Copynumber: 2.7 Consensus size: 81 63773783 TACCCTACAG * * * ** * 63773793 GGGTATTTT-AGTAAATTTACAAACTGGGGGTATTTCAATAATTTTACAAATTGGGGGTATTTTA 1 GGGTATTTTGA-TAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTTA * 63773857 GAAATTTTA-TAATTCGA 65 GAAATTTTACAAATTC-A * * * * * 63773874 GGGTATTTTGATAATTTTACAATCCGAGGGTATTTCGGTAATTTTATAAACCGAGGGTATTTTGG 1 GGGTATTTTGATAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTTAG * 63773939 TAATTTTACAAATTCA 66 AAATTTTACAAATTCA * 63773955 GGGTATTTCGATAATTTTACAAA-TCGAGGGTATTTCAGTAATTTTACAAACC-AGGGT 1 GGGTATTTTGATAATTTTACAAACT-GAGGGTATTTCAGTAATTTTACAAACCGAGGGT 63774012 CTAATTGGCA Statistics Matches: 117, Mismatches: 18, Indels: 7 0.82 0.13 0.05 Matches are distributed among these distances: 80 5 0.04 81 106 0.91 82 6 0.05 ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39 Consensus pattern (81 bp): GGGTATTTTGATAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCGAGGGTATTTTAG AAATTTTACAAATTCA Found at i:63774210 original size:22 final size:22 Alignment explanation
Indices: 63774147--63774211 Score: 69 Period size: 22 Copynumber: 3.0 Consensus size: 22 63774137 AATACGTTTA * 63774147 GCACAAAGCCATAGTCAAGA-TG 1 GCACAAAGCCATAATC-AGATTG ** * 63774169 GCACAAAGCCATTTTTAGATTG 1 GCACAAAGCCATAATCAGATTG * 63774191 GCACAGAGCCATAATCAGATT 1 GCACAAAGCCATAATCAGATT 63774212 ACGCGGCTTT Statistics Matches: 35, Mismatches: 7, Indels: 2 0.80 0.16 0.05 Matches are distributed among these distances: 21 3 0.09 22 32 0.91 ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22 Consensus pattern (22 bp): GCACAAAGCCATAATCAGATTG Found at i:63774608 original size:27 final size:27 Alignment explanation
Indices: 63774578--63774708 Score: 122 Period size: 27 Copynumber: 4.9 Consensus size: 27 63774568 ACCCTACAGA * * 63774578 GGTATTTCGATAATTTTATAAACTGGC 1 GGTATTTCGGTAATTTTACAAACTGGC ** * 63774605 GGTATTTCGGTAATTTTACAATTTGGG 1 GGTATTTCGGTAATTTTACAAACTGGC * * * 63774632 GGTATTTTGGTAATTTTACAAATTAAG- 1 GGTATTTCGGTAATTTTACAAACT-GGC * * 63774659 GGTATTTCAGTAATTTTACAAACCGAG- 1 GGTATTTCGGTAATTTTACAAACTG-GC * * 63774686 GGTATCTCAGTAATTTTACAAAC 1 GGTATTTCGGTAATTTTACAAAC 63774709 CGAGTCTTAA Statistics Matches: 88, Mismatches: 14, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 27 87 0.99 28 1 0.01 ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40 Consensus pattern (27 bp): GGTATTTCGGTAATTTTACAAACTGGC Found at i:63776398 original size:2 final size:2 Alignment explanation
Indices: 63776391--63776420 Score: 60 Period size: 2 Copynumber: 15.0 Consensus size: 2 63776381 ACCAAAACAG 63776391 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 63776421 GTGGCGAAGC Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:63776501 original size:27 final size:26 Alignment explanation
Indices: 63776453--63776504 Score: 68 Period size: 27 Copynumber: 2.0 Consensus size: 26 63776443 GCGAGGCTGC * 63776453 CAGATATTGTGACGAAGTCACCAGAA 1 CAGATATTGTGACGAAGCCACCAGAA * * 63776479 CAGATATATGTGGCGAGGCCACCAGA 1 CAGATAT-TGTGACGAAGCCACCAGA 63776505 TTGTAGCGAG Statistics Matches: 22, Mismatches: 3, Indels: 1 0.85 0.12 0.04 Matches are distributed among these distances: 26 7 0.32 27 15 0.68 ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17 Consensus pattern (26 bp): CAGATATTGTGACGAAGCCACCAGAA Found at i:63778543 original size:40 final size:40 Alignment explanation
Indices: 63778512--63778730 Score: 352 Period size: 40 Copynumber: 5.5 Consensus size: 40 63778502 CGCTCGAATA * * 63778512 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGTACAAATG 1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG 63778552 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 63778592 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG * 63778632 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG * * * 63778672 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAATG 1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 63778712 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 63778731 TTATCATCCA Statistics Matches: 169, Mismatches: 7, Indels: 6 0.93 0.04 0.03 Matches are distributed among these distances: 39 2 0.01 40 166 0.98 41 1 0.01 ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG Found at i:63778607 original size:80 final size:80 Alignment explanation
Indices: 63778473--63778730 Score: 362 Period size: 80 Copynumber: 3.2 Consensus size: 80 63778463 AAGCCAAGTA * * * * * * 63778473 CCTTCGGGATTTAACCC-GATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGCCCGGATA-T 1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACT * 63778535 AGTAACTCGTACAAATG 64 AGTAACTCGCACAAATG 63778552 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTA 1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTA 63778616 GTAACTCGCACAAATG 65 GTAACTCGCACAAATG * 63778632 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG * * * 63778697 TCACTAGCGCAAATG 66 TAACTCGCACAAATG 63778712 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 63778731 TTATCATCCA Statistics Matches: 163, Mismatches: 11, Indels: 9 0.89 0.06 0.05 Matches are distributed among these distances: 79 18 0.11 80 144 0.88 81 1 0.01 ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22 Consensus pattern (80 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG TAACTCGCACAAATG Found at i:63784508 original size:81 final size:81 Alignment explanation
Indices: 63784373--63784558 Score: 225 Period size: 81 Copynumber: 2.3 Consensus size: 81 63784363 TATTCGAATG * ** * * * 63784373 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACTATATCCGGACTAAGAT-CCGAAGG 1 ATATCCGGGCAAAAACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAG-TCCCGAAGG * 63784437 CATTTATGCGAGTTA-C 65 CATTTATGCGAGTGATC * 63784453 TATATCCGGGCCAAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAG 1 -ATATCCGGG-CAAAAACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGTCCCGAAG * 63784517 GCATTTATGCTAGTGATC 64 GCATTTATGCGAGTGATC * * 63784535 ATATCCGGGCTAAGACCCGAAGGC 1 ATATCCGGGCAAAAACCCGAAGGC 63784559 CTTGTGCGAG Statistics Matches: 91, Mismatches: 11, Indels: 7 0.83 0.10 0.06 Matches are distributed among these distances: 80 14 0.15 81 57 0.63 82 20 0.22 ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25 Consensus pattern (81 bp): ATATCCGGGCAAAAACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGTCCCGAAGGC ATTTATGCGAGTGATC Found at i:63784528 original size:40 final size:40 Alignment explanation
Indices: 63784373--63784558 Score: 214 Period size: 40 Copynumber: 4.6 Consensus size: 40 63784363 TATTCGAATG * * * 63784373 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACT * * * 63784414 ATATCCGGACTAAGAT-CCGAAGGCATTTATGCGAGTTACT 1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT * ** * * 63784454 ATATCCGGGCCAAAAACCCGAAGGCATTTGTGCTAGCGACT 1 ATATCCGGG-CTAAGTCCCGAAGGCATTTATGCTAGTGACT 63784495 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T 1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT * 63784534 CATATCCGGGCTAAGACCCGAAGGC 1 -ATATCCGGGCTAAGTCCCGAAGGC 63784559 CTTGTGCGAG Statistics Matches: 121, Mismatches: 20, Indels: 9 0.81 0.13 0.06 Matches are distributed among these distances: 39 1 0.01 40 61 0.50 41 58 0.48 42 1 0.01 ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT Found at i:63793376 original size:27 final size:27 Alignment explanation
Indices: 63793261--63793375 Score: 108 Period size: 27 Copynumber: 4.3 Consensus size: 27 63793251 ACCCTACAGA * * * 63793261 GGTATTTCGATAATTTTACAAATTGGG 1 GGTATTTCGGTAATTTTACAAATCGAG * * 63793288 GGTATTTCGGTAATTTTA-TAATCCGGG 1 GGTATTTCGGTAATTTTACAAAT-CGAG * * * 63793315 GGTATTTCAGTAACTTTACAAA-CCAGG 1 GGTATTTCGGTAATTTTACAAATCGA-G * * 63793342 GGTATTTTGGTAATTTTACAAATTGAG 1 GGTATTTCGGTAATTTTACAAATCGAG 63793369 GGTATTT 1 GGTATTT 63793376 TACAAACCGG Statistics Matches: 71, Mismatches: 13, Indels: 8 0.77 0.14 0.09 Matches are distributed among these distances: 26 4 0.06 27 64 0.90 28 3 0.04 ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40 Consensus pattern (27 bp): GGTATTTCGGTAATTTTACAAATCGAG Found at i:63797727 original size:27 final size:27 Alignment explanation
Indices: 63797689--63797742 Score: 108 Period size: 27 Copynumber: 2.0 Consensus size: 27 63797679 TTAGATGCCG 63797689 GGTTCATTAGGCCATCTAAAGCCCCAT 1 GGTTCATTAGGCCATCTAAAGCCCCAT 63797716 GGTTCATTAGGCCATCTAAAGCCCCAT 1 GGTTCATTAGGCCATCTAAAGCCCCAT 63797743 TCGGTGCACC Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 27 27 1.00 ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26 Consensus pattern (27 bp): GGTTCATTAGGCCATCTAAAGCCCCAT Found at i:63810721 original size:56 final size:56 Alignment explanation
Indices: 63810653--63810764 Score: 206 Period size: 56 Copynumber: 2.0 Consensus size: 56 63810643 GCCAACGTCC * * 63810653 CAGACTTGGTCTTACATGTAGTCACATATCGATGCCATTGTCCCAGACAGGGTCTT 1 CAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCAGACAGGGTCTT 63810709 CAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCAGACAGGGTCTT 1 CAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCAGACAGGGTCTT 63810765 TCTCGCACAC Statistics Matches: 54, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 56 54 1.00 ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29 Consensus pattern (56 bp): CAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCAGACAGGGTCTT Found at i:63820354 original size:39 final size:39 Alignment explanation
Indices: 63820289--63820381 Score: 141 Period size: 39 Copynumber: 2.3 Consensus size: 39 63820279 AAAATTGAGC * 63820289 ATAGCGGCATTTTTTGTCCAAACGCCACTAAAAACTGAGAA 1 ATAGCGGCA--TTTTGTCCAAACGCCACTAAAAACTAAGAA * * 63820330 ATAGCGGCATTTTGTCTAAACGCCACTAAAAACTAAGCA 1 ATAGCGGCATTTTGTCCAAACGCCACTAAAAACTAAGAA 63820369 ATAGCGGCATTTT 1 ATAGCGGCATTTT 63820382 TTTAACAAAC Statistics Matches: 49, Mismatches: 3, Indels: 2 0.91 0.06 0.04 Matches are distributed among these distances: 39 40 0.82 41 9 0.18 ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26 Consensus pattern (39 bp): ATAGCGGCATTTTGTCCAAACGCCACTAAAAACTAAGAA Found at i:63820443 original size:41 final size:41 Alignment explanation
Indices: 63820289--63820442 Score: 174 Period size: 41 Copynumber: 3.8 Consensus size: 41 63820279 AAAATTGAGC * * 63820289 ATAGCGGCATTTTTTGTCCAAACGCCACTAAAAACTGAGAA 1 ATAGCGGCATTTTTTGTCCAAACGCCACTAAAAACTAAGCA * 63820330 ATAGCGGCA--TTTTGTCTAAACGCCACTAAAAACTAAGCA 1 ATAGCGGCATTTTTTGTCCAAACGCCACTAAAAACTAAGCA * * * * 63820369 ATAGCGGCATTTTTT-TAACAAACGCCAC-AAAAAGCTTATCT 1 ATAGCGGCATTTTTTGT-CCAAACGCCACTAAAAA-CTAAGCA * * 63820410 ATAGCGCCATTTTTTATCCAAACGCCA-TAAAAA 1 ATAGCGGCATTTTTTGTCCAAACGCCACTAAAAA 63820443 GTTGAGCAGC Statistics Matches: 97, Mismatches: 10, Indels: 12 0.82 0.08 0.10 Matches are distributed among these distances: 39 36 0.37 40 6 0.06 41 54 0.56 42 1 0.01 ACGTcount: A:0.38, C:0.23, G:0.14, T:0.26 Consensus pattern (41 bp): ATAGCGGCATTTTTTGTCCAAACGCCACTAAAAACTAAGCA Found at i:63824172 original size:21 final size:20 Alignment explanation
Indices: 63824146--63824200 Score: 56 Period size: 21 Copynumber: 2.6 Consensus size: 20 63824136 TTTATTTTTG 63824146 GGTTTAGTGTTTATTATGTAA 1 GGTTTAG-GTTTATTATGTAA * * * 63824167 GGTTTAAGGTTTATTTTTTAT 1 GGTTT-AGGTTTATTATGTAA 63824188 GGTTTAGGGTTTA 1 GGTTTA-GGTTTA 63824201 ATGGTCATCA Statistics Matches: 29, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 20 1 0.03 21 26 0.90 22 2 0.07 ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55 Consensus pattern (20 bp): GGTTTAGGTTTATTATGTAA Found at i:63824508 original size:21 final size:21 Alignment explanation
Indices: 63824438--63824551 Score: 79 Period size: 21 Copynumber: 5.4 Consensus size: 21 63824428 TACATGGAAT *** * 63824438 TAGGGTTTAAGGTTTAAAATT 1 TAGGGTTTAAGGTTTAGTCTA ** 63824459 TA-GGTTTAAGGTTTAGGGTA 1 TAGGGTTTAAGGTTTAGTCTA * * * 63824479 TTTGGGTTTATGGTTTAGTTTA 1 -TAGGGTTTAAGGTTTAGTCTA * * 63824501 TAGGGTTTAAGGTATTCG-GTA 1 TAGGGTTTAAGGT-TTAGTCTA * * 63824522 TCGGGTTTAGGGTTTAGTCTA 1 TAGGGTTTAAGGTTTAGTCTA 63824543 TAGGGTTTA 1 TAGGGTTTA 63824552 GGGTATTGGG Statistics Matches: 72, Mismatches: 17, Indels: 8 0.74 0.18 0.08 Matches are distributed among these distances: 20 17 0.24 21 37 0.51 22 18 0.25 ACGTcount: A:0.22, C:0.03, G:0.31, T:0.45 Consensus pattern (21 bp): TAGGGTTTAAGGTTTAGTCTA Found at i:63824528 original size:42 final size:42 Alignment explanation
Indices: 63824482--63824572 Score: 146 Period size: 42 Copynumber: 2.2 Consensus size: 42 63824472 TAGGGTATTT * * 63824482 GGGTTTATGGTTTAGTTTATAGGGTTTAAGGTATTCGGTATC 1 GGGTTTAGGGTTTAGTCTATAGGGTTTAAGGTATTCGGTATC * * 63824524 GGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATTGGGTATC 1 GGGTTTAGGGTTTAGTCTATAGGGTTTAAGGTATTCGGTATC 63824566 GGGTTTA 1 GGGTTTA 63824573 CAAATTAAAT Statistics Matches: 45, Mismatches: 4, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 42 45 1.00 ACGTcount: A:0.18, C:0.04, G:0.35, T:0.43 Consensus pattern (42 bp): GGGTTTAGGGTTTAGTCTATAGGGTTTAAGGTATTCGGTATC Found at i:63824569 original size:21 final size:21 Alignment explanation
Indices: 63824503--63824572 Score: 79 Period size: 21 Copynumber: 3.3 Consensus size: 21 63824493 TTAGTTTATA * * 63824503 GGGTTTAAGGTATTCGGTATC 1 GGGTTTAGGGTATTGGGTATC ** * 63824524 GGGTTTAGGGT-TTAGTCTATA 1 GGGTTTAGGGTATT-GGGTATC 63824545 GGGTTTAGGGTATTGGGTATC 1 GGGTTTAGGGTATTGGGTATC 63824566 GGGTTTA 1 GGGTTTA 63824573 CAAATTAAAT Statistics Matches: 39, Mismatches: 8, Indels: 4 0.76 0.16 0.08 Matches are distributed among these distances: 20 2 0.05 21 35 0.90 22 2 0.05 ACGTcount: A:0.17, C:0.06, G:0.37, T:0.40 Consensus pattern (21 bp): GGGTTTAGGGTATTGGGTATC Found at i:63826012 original size:2 final size:2 Alignment explanation
Indices: 63826005--63826029 Score: 50 Period size: 2 Copynumber: 12.5 Consensus size: 2 63825995 GAGACTAGTC 63826005 AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT A 63826030 CATGTCATGA Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 23 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:63828065 original size:30 final size:30 Alignment explanation
Indices: 63828031--63828091 Score: 77 Period size: 30 Copynumber: 2.0 Consensus size: 30 63828021 TCCTTAACTC 63828031 AAACTTTGGAAAAATTACAATTTTGCCCCT 1 AAACTTTGGAAAAATTACAATTTTGCCCCT * * * * * 63828061 AAACTTTTGCATAGTTACACTTTTGCCCCT 1 AAACTTTGGAAAAATTACAATTTTGCCCCT 63828091 A 1 A 63828092 GGCTCGGGAA Statistics Matches: 26, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 30 26 1.00 ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36 Consensus pattern (30 bp): AAACTTTGGAAAAATTACAATTTTGCCCCT Found at i:63830364 original size:24 final size:24 Alignment explanation
Indices: 63830332--63830394 Score: 126 Period size: 24 Copynumber: 2.6 Consensus size: 24 63830322 AATCTCAAAT 63830332 GCACTATGTGTGCGATTTACTATG 1 GCACTATGTGTGCGATTTACTATG 63830356 GCACTATGTGTGCGATTTACTATG 1 GCACTATGTGTGCGATTTACTATG 63830380 GCACTATGTGTGCGA 1 GCACTATGTGTGCGA 63830395 ACATAATAAG Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 39 1.00 ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35 Consensus pattern (24 bp): GCACTATGTGTGCGATTTACTATG Found at i:63833196 original size:27 final size:27 Alignment explanation
Indices: 63833166--63833258 Score: 78 Period size: 27 Copynumber: 3.1 Consensus size: 27 63833156 TTCAAAGGGT 63833166 TTTTGAATTTCCATTTTAGCCTATAAA 1 TTTTGAATTTCCATTTTAGCCTATAAA * * * 63833193 TTTTCAAGTTCCATTTTAGTCTAATTTCAAA 1 TTTTGAATTTCCATTTTAGCCT-A--T-AAA * 63833224 GGGTTTTTGAATTTTCATTTTAGCCTATAAA 1 ----TTTTGAATTTCCATTTTAGCCTATAAA 63833255 TTTT 1 TTTT 63833259 CAAGTTTATT Statistics Matches: 51, Mismatches: 7, Indels: 16 0.69 0.09 0.22 Matches are distributed among these distances: 27 23 0.45 28 1 0.02 30 1 0.02 31 6 0.12 32 1 0.02 34 1 0.02 35 18 0.35 ACGTcount: A:0.27, C:0.13, G:0.10, T:0.51 Consensus pattern (27 bp): TTTTGAATTTCCATTTTAGCCTATAAA Found at i:63833243 original size:62 final size:62 Alignment explanation
Indices: 63833141--63833264 Score: 239 Period size: 62 Copynumber: 2.0 Consensus size: 62 63833131 TGTAGTAAAC 63833141 CCATTTTAGTCTAATTTCAAAGGGTTTTTGAATTTCCATTTTAGCCTATAAATTTTCAAGTT 1 CCATTTTAGTCTAATTTCAAAGGGTTTTTGAATTTCCATTTTAGCCTATAAATTTTCAAGTT * 63833203 CCATTTTAGTCTAATTTCAAAGGGTTTTTGAATTTTCATTTTAGCCTATAAATTTTCAAGTT 1 CCATTTTAGTCTAATTTCAAAGGGTTTTTGAATTTCCATTTTAGCCTATAAATTTTCAAGTT 63833265 TATTACTGTA Statistics Matches: 61, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 62 61 1.00 ACGTcount: A:0.27, C:0.14, G:0.11, T:0.48 Consensus pattern (62 bp): CCATTTTAGTCTAATTTCAAAGGGTTTTTGAATTTCCATTTTAGCCTATAAATTTTCAAGTT Found at i:63833538 original size:20 final size:20 Alignment explanation
Indices: 63833513--63833553 Score: 64 Period size: 20 Copynumber: 2.0 Consensus size: 20 63833503 TTGCAGGTGT 63833513 AATTTAAGTTGCTAGAATCG 1 AATTTAAGTTGCTAGAATCG * * 63833533 AATTTAATTTGCTGGAATCG 1 AATTTAAGTTGCTAGAATCG 63833553 A 1 A 63833554 CTCTACCATC Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 20 19 1.00 ACGTcount: A:0.34, C:0.10, G:0.20, T:0.37 Consensus pattern (20 bp): AATTTAAGTTGCTAGAATCG Found at i:63834557 original size:9 final size:9 Alignment explanation
Indices: 63834545--63834711 Score: 105 Period size: 9 Copynumber: 19.1 Consensus size: 9 63834535 TATATCATAT 63834545 CATAACTTA 1 CATAACTTA 63834554 CATAACTTA 1 CATAACTTA * 63834563 CAAAACTTA 1 CATAACTTA * 63834572 CACAA--TA 1 CATAACTTA * 63834579 CATAA-ATA 1 CATAACTTA * 63834587 TATAACTTA 1 CATAACTTA * 63834596 TATAACTTA 1 CATAACTTA * 63834605 CGTAA--TA 1 CATAACTTA * 63834612 CATAA-ATA 1 CATAACTTA * ** * 63834620 TATTTCATA 1 CATAACTTA * 63834629 TCATAATTTA 1 -CATAACTTA 63834639 CATAACTTA 1 CATAACTTA * 63834648 CATACCTTA 1 CATAACTTA * 63834657 CATAAATT- 1 CATAACTTA * * * 63834665 TATATCATA 1 CATAACTTA 63834674 TCATAACTTA 1 -CATAACTTA 63834684 CATAACTTA 1 CATAACTTA 63834693 CATAACTTA 1 CATAACTTA * 63834702 CTTAACTTA 1 CATAACTTA 63834711 C 1 C 63834712 GTAATACATA Statistics Matches: 123, Mismatches: 28, Indels: 14 0.75 0.17 0.08 Matches are distributed among these distances: 7 12 0.10 8 14 0.11 9 87 0.71 10 10 0.08 ACGTcount: A:0.45, C:0.19, G:0.01, T:0.36 Consensus pattern (9 bp): CATAACTTA Found at i:63834592 original size:33 final size:33 Alignment explanation
Indices: 63834555--63834622 Score: 100 Period size: 33 Copynumber: 2.1 Consensus size: 33 63834545 CATAACTTAC 63834555 ATAACTTACAAAACTTACACAATACATAAATAT 1 ATAACTTACAAAACTTACACAATACATAAATAT * * ** 63834588 ATAACTTATATAACTTACGTAATACATAAATAT 1 ATAACTTACAAAACTTACACAATACATAAATAT 63834621 AT 1 AT 63834623 TTCATATCAT Statistics Matches: 31, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 33 31 1.00 ACGTcount: A:0.51, C:0.15, G:0.01, T:0.32 Consensus pattern (33 bp): ATAACTTACAAAACTTACACAATACATAAATAT Found at i:63834663 original size:45 final size:45 Alignment explanation
Indices: 63834529--63834702 Score: 223 Period size: 45 Copynumber: 4.0 Consensus size: 45 63834519 ATCTTAATGT * 63834529 TAAATATATATCATATCATAACTTACATAACTTACAAAACTTACA 1 TAAATATATATCATATCATAACTTACATAACTTACATAACTTACA * * * * * 63834574 -CAATACATA-AATAT-ATAACTTATATAACTTACGTAA--TACA 1 TAAATATATATCATATCATAACTTACATAACTTACATAACTTACA * * * 63834614 TAAATATATTTCATATCATAATTTACATAACTTACATACCTTACA 1 TAAATATATATCATATCATAACTTACATAACTTACATAACTTACA * 63834659 TAAATTTATATCATATCATAACTTACATAACTTACATAACTTAC 1 TAAATATATATCATATCATAACTTACATAACTTACATAACTTAC 63834703 TTAACTTACG Statistics Matches: 106, Mismatches: 18, Indels: 10 0.79 0.13 0.07 Matches are distributed among these distances: 40 4 0.04 41 6 0.06 42 23 0.22 43 22 0.21 44 7 0.07 45 44 0.42 ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36 Consensus pattern (45 bp): TAAATATATATCATATCATAACTTACATAACTTACATAACTTACA Found at i:63836518 original size:12 final size:12 Alignment explanation
Indices: 63836501--63836526 Score: 52 Period size: 12 Copynumber: 2.2 Consensus size: 12 63836491 AAGATTGAGG 63836501 GATGAATCTGAT 1 GATGAATCTGAT 63836513 GATGAATCTGAT 1 GATGAATCTGAT 63836525 GA 1 GA 63836527 AGAGGATGAT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31 Consensus pattern (12 bp): GATGAATCTGAT Found at i:63838614 original size:30 final size:30 Alignment explanation
Indices: 63838559--63838689 Score: 171 Period size: 30 Copynumber: 4.5 Consensus size: 30 63838549 ATAGTGAATC * 63838559 CGCACACTTAGTGCTATAT-ATTTTCAGCT 1 CGCACACTTAGTGCTATATAATTTTCAACT * 63838588 CGCACACTTAGTGCTATATAATTTTCAGCT 1 CGCACACTTAGTGCTATATAATTTTCAACT 63838618 CGCACACTTAGTGCTATATAA---TCAAACT 1 CGCACACTTAGTGCTATATAATTTTC-AACT * * * * 63838646 CGCACACTTAGTGCTGTACAATTTTAAACC 1 CGCACACTTAGTGCTATATAATTTTCAACT 63838676 CGCACACTTAGTGC 1 CGCACACTTAGTGC 63838690 CAATCTTGTC Statistics Matches: 92, Mismatches: 5, Indels: 9 0.87 0.05 0.08 Matches are distributed among these distances: 27 2 0.02 28 22 0.24 29 19 0.21 30 48 0.52 31 1 0.01 ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32 Consensus pattern (30 bp): CGCACACTTAGTGCTATATAATTTTCAACT Found at i:63838669 original size:58 final size:58 Alignment explanation
Indices: 63838558--63838689 Score: 176 Period size: 58 Copynumber: 2.3 Consensus size: 58 63838548 TATAGTGAAT * * * * * 63838558 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC 1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC * * 63838617 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC 1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC 63838675 CCGCACACTTAGTGC 1 CCGCACACTTAGTGC 63838690 CAATCTTGTC Statistics Matches: 64, Mismatches: 8, Indels: 3 0.85 0.11 0.04 Matches are distributed among these distances: 57 2 0.03 58 42 0.66 59 20 0.31 ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32 Consensus pattern (58 bp): CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC Found at i:63843412 original size:31 final size:31 Alignment explanation
Indices: 63843371--63843434 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 63843361 CCTTTTCACA * 63843371 TTTCACATTTCATAACACTGGGCCGAAGCCT 1 TTTCAAATTTCATAACACTGGGCCGAAGCCT ** 63843402 TTTCAAATTTCATATTACTGGGCCGAAGCCT 1 TTTCAAATTTCATAACACTGGGCCGAAGCCT 63843433 TT 1 TT 63843435 ACTGTAAACG Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 31 30 1.00 ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34 Consensus pattern (31 bp): TTTCAAATTTCATAACACTGGGCCGAAGCCT Found at i:63843675 original size:24 final size:24 Alignment explanation
Indices: 63843648--63843793 Score: 233 Period size: 24 Copynumber: 6.2 Consensus size: 24 63843638 CCTAGCCTCT * 63843648 TTTTAATAACTGGGGCAAAAGCCC 1 TTTTAATAACTGGGGCATAAGCCC 63843672 TTTTAATAACTGGGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCC 63843696 -TTTAATAACTGGGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCC * * 63843719 TTTTGATAACTCGGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCC * * 63843743 TTTTGATAACTGAGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCC 63843767 -TTTAATAACTGGGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCC 63843790 TTTT 1 TTTT 63843794 TCACTTCCTC Statistics Matches: 113, Mismatches: 7, Indels: 4 0.91 0.06 0.03 Matches are distributed among these distances: 23 44 0.39 24 69 0.61 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Consensus pattern (24 bp): TTTTAATAACTGGGGCATAAGCCC Found at i:63843741 original size:71 final size:71 Alignment explanation
Indices: 63843648--63843793 Score: 247 Period size: 71 Copynumber: 2.1 Consensus size: 71 63843638 CCTAGCCTCT * * 63843648 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT 1 TTTTAATAACTCGGGCAAAAGCCCTTTTAATAACTGAGGCATAAGCCCTTTAATAACTGGGGCAT 63843713 AAGCCC 66 AAGCCC * * * 63843719 TTTTGATAACTCGGGCATAAGCCCTTTTGATAACTGAGGCATAAGCCCTTTAATAACTGGGGCAT 1 TTTTAATAACTCGGGCAAAAGCCCTTTTAATAACTGAGGCATAAGCCCTTTAATAACTGGGGCAT 63843784 AAGCCC 66 AAGCCC 63843790 TTTT 1 TTTT 63843794 TCACTTCCTC Statistics Matches: 70, Mismatches: 5, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 71 70 1.00 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Consensus pattern (71 bp): TTTTAATAACTCGGGCAAAAGCCCTTTTAATAACTGAGGCATAAGCCCTTTAATAACTGGGGCAT AAGCCC Found at i:63843793 original size:47 final size:48 Alignment explanation
Indices: 63843648--63843793 Score: 233 Period size: 47 Copynumber: 3.1 Consensus size: 48 63843638 CCTAGCCTCT * 63843648 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC * * 63843696 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTCGGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC * * 63843743 TTTTGATAACTGAGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC 1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC 63843790 TTTT 1 TTTT 63843794 TCACTTCCTC Statistics Matches: 90, Mismatches: 7, Indels: 3 0.90 0.07 0.03 Matches are distributed among these distances: 47 69 0.77 48 21 0.23 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Consensus pattern (48 bp): TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC Found at i:63843867 original size:20 final size:20 Alignment explanation
Indices: 63843842--63843908 Score: 116 Period size: 20 Copynumber: 3.4 Consensus size: 20 63843832 TTATGATTAC 63843842 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 63843862 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT * 63843882 GTCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT * 63843902 ACCATGT 1 ATCATGT 63843909 TTATCAAAAT Statistics Matches: 44, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 44 1.00 ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:63843873 original size:11 final size:11 Alignment explanation
Indices: 63843842--63843897 Score: 57 Period size: 11 Copynumber: 5.5 Consensus size: 11 63843832 TTATGATTAC 63843842 ATCATGTGCAT 1 ATCATGTGCAT * 63843853 ATCA--TACAT 1 ATCATGTGCAT 63843862 ATCATGTGCAT 1 ATCATGTGCAT * 63843873 ATCA--TACAT 1 ATCATGTGCAT * 63843882 GTCATGTGCAT 1 ATCATGTGCAT 63843893 ATCAT 1 ATCAT 63843898 ACATACCATG Statistics Matches: 35, Mismatches: 6, Indels: 8 0.71 0.12 0.16 Matches are distributed among these distances: 9 15 0.43 11 20 0.57 ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36 Consensus pattern (11 bp): ATCATGTGCAT Found at i:63843977 original size:25 final size:25 Alignment explanation
Indices: 63843945--63843992 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 63843935 ATACATAAAC * * * 63843945 CCTAGGGGTATAATGGTCATTTTTA 1 CCTAGGGGCAAAACGGTCATTTTTA 63843970 CCTAGGGGCAAAACGGTCATTTT 1 CCTAGGGGCAAAACGGTCATTTT 63843993 CATGTTATAG Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33 Consensus pattern (25 bp): CCTAGGGGCAAAACGGTCATTTTTA Found at i:63846332 original size:39 final size:39 Alignment explanation
Indices: 63846248--63846400 Score: 216 Period size: 39 Copynumber: 3.9 Consensus size: 39 63846238 TATGGTAACC ** * * 63846248 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT 1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT * * 63846288 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * * 63846327 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * 63846366 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 63846401 TCGAACATTC Statistics Matches: 101, Mismatches: 12, Indels: 1 0.89 0.11 0.01 Matches are distributed among these distances: 39 86 0.85 40 15 0.15 ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25 Consensus pattern (39 bp): CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT Found at i:63846374 original size:78 final size:79 Alignment explanation
Indices: 63846217--63846399 Score: 269 Period size: 78 Copynumber: 2.3 Consensus size: 79 63846207 TCGTTCAAAC * * ** 63846217 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 63846282 ACAATTTGCACAATT 65 ACAATTTGCACAATT * ** * * 63846297 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA 1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA 63846361 CAATTTGCACAATT 66 CAATTTGCACAATT 63846375 GCCTTCGGGCTTAGCCCGGATATCA 1 GCCTTCGGGCTTAGCCCGGATATCA 63846400 CTCGAACATT Statistics Matches: 94, Mismatches: 9, Indels: 2 0.90 0.09 0.02 Matches are distributed among these distances: 78 53 0.56 79 32 0.34 80 9 0.10 ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25 Consensus pattern (79 bp): GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA CAATTTGCACAATT Found at i:63849374 original size:46 final size:46 Alignment explanation
Indices: 63849319--63849499 Score: 233 Period size: 46 Copynumber: 3.9 Consensus size: 46 63849309 TAGGATGGTT 63849319 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC 1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC * * * 63849365 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC 1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C * 63849411 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC 1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC * ** * 63849458 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 63849500 GCGGGTTACA Statistics Matches: 116, Mismatches: 12, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 4 0.03 45 2 0.02 46 71 0.61 47 33 0.28 48 2 0.02 50 4 0.03 ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28 Consensus pattern (46 bp): GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC Found at i:63849480 original size:93 final size:93 Alignment explanation
Indices: 63849321--63849491 Score: 315 Period size: 93 Copynumber: 1.8 Consensus size: 93 63849311 GGATGGTTGA * * 63849321 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 63849386 TGAGTCCGAGTTCGTGAGATGTAACTAG 66 TGAGTCCGAGTTCGTGAGATGTAACTAG * 63849414 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT 63849479 TGAGTCCGAGTTC 66 TGAGTCCGAGTTC 63849492 ACTTATGGGC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27 Consensus pattern (93 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT TGAGTCCGAGTTCGTGAGATGTAACTAG Found at i:63852470 original size:15 final size:15 Alignment explanation
Indices: 63852450--63852518 Score: 84 Period size: 15 Copynumber: 4.6 Consensus size: 15 63852440 GTATCTTGGG 63852450 TTTCTTTATCCTGGA 1 TTTCTTTATCCTGGA * * 63852465 TCTCTTTATTCTGGA 1 TTTCTTTATCCTGGA * * 63852480 TTTCTTTATTCTGGG 1 TTTCTTTATCCTGGA * * 63852495 TTTCTCTATCTTGGA 1 TTTCTTTATCCTGGA 63852510 TTTCTTTAT 1 TTTCTTTAT 63852519 TCGGTTTTCT Statistics Matches: 45, Mismatches: 9, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 15 45 1.00 ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58 Consensus pattern (15 bp): TTTCTTTATCCTGGA Found at i:63852519 original size:30 final size:30 Alignment explanation
Indices: 63852441--63852528 Score: 99 Period size: 30 Copynumber: 3.0 Consensus size: 30 63852431 CATAGTATCG * * * * 63852441 TATCTTGGGTTTCTTTATCCTGGATCTCTT 1 TATCTTGGATTTCTTTATTCTGGATTTCTC * 63852471 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC 1 TATCT-TGGATTTCTTTATTCTGGATTTCTC * 63852501 TATCTTGGATTTCTTTATTC-GGTTTTCT 1 TATCTTGGATTTCTTTATTCTGGATTTCT 63852529 TGTTATCTTT Statistics Matches: 50, Mismatches: 6, Indels: 5 0.82 0.10 0.08 Matches are distributed among these distances: 29 8 0.16 30 41 0.82 31 1 0.02 ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57 Consensus pattern (30 bp): TATCTTGGATTTCTTTATTCTGGATTTCTC Found at i:63854948 original size:46 final size:46 Alignment explanation
Indices: 63854898--63855073 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 63854888 ATGGTTGGCA 63854898 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * * * 63854944 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG * 63854991 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * 63855037 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 63855074 GCGGGTTACA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 4 0.04 45 2 0.02 46 67 0.60 47 33 0.29 48 2 0.02 50 4 0.04 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG Found at i:63855053 original size:93 final size:93 Alignment explanation
Indices: 63854894--63855065 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 63854884 TAGGATGGTT * * 63854894 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 63854959 TTGAGTCCGAGTTCGTGAGATGTAACTA 66 TTGAGTCCGAGTTCGTGAGATGTAACTA * 63854987 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 63855052 TTGAGTCCGAGTTC 66 TTGAGTCCGAGTTC 63855066 ACTTATGGGC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGTGAGATGTAACTA Found at i:63868052 original size:40 final size:40 Alignment explanation
Indices: 63868007--63868173 Score: 185 Period size: 40 Copynumber: 4.2 Consensus size: 40 63867997 CGGAATATAA 63868007 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC * * * * 63868047 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC ** * * 63868087 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC ** * * * * 63868127 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC 63868166 CCGGATAT 1 CCGGATAT 63868174 CATTCAATTT Statistics Matches: 107, Mismatches: 19, Indels: 3 0.83 0.15 0.02 Matches are distributed among these distances: 39 14 0.13 40 93 0.87 ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26 Consensus pattern (40 bp): CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:63871207 original size:48 final size:47 Alignment explanation
Indices: 63871148--63871522 Score: 195 Period size: 48 Copynumber: 7.9 Consensus size: 47 63871138 ACCACAATAT * 63871148 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAAC 1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AAC * * * * * * 63871196 GAGAGCTAGTGTAAGA-TATGTCTAGGACAT-GCATCAGCCTCGAGAT 1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-AC * 63871242 GTA-AGCTAGTGTAAGA-CATGTCTGGGGA-AT-GCATCAG-ATATG-A- 1 G-AGAGCTAGTGTAAGACCATGTCT-GGGACATGGCATCGGCAT-TGAAC * * * * * 63871285 GATGTGTTAGTGTAAGACCATGTCTAGGACATGGCATCAGCA-CGTATA- 1 GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-A-AC * * * ** * 63871333 GTGGTGTCT-GTGTAAGACCATGTCTGGGACATGGCATCGACACGGATATAT 1 G-AGAG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--A-AC * * * * * 63871384 GAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGATTTC 1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--AC * * * * * * 63871433 AATAG-TCAATGTAAGACCATGTTTGGGGCATGGCATCGAC-TTG-AC 1 GAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAC * * 63871478 GGATGAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGCATT 1 -GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT 63871523 ATACCATATG Statistics Matches: 253, Mismatches: 49, Indels: 50 0.72 0.14 0.14 Matches are distributed among these distances: 42 1 0.00 43 1 0.00 44 15 0.06 45 13 0.05 46 48 0.19 47 47 0.19 48 56 0.22 49 35 0.14 50 36 0.14 51 1 0.00 ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25 Consensus pattern (47 bp): GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAC Found at i:63871252 original size:46 final size:46 Alignment explanation
Indices: 63871106--63871415 Score: 201 Period size: 46 Copynumber: 6.6 Consensus size: 46 63871096 TTATTTGTCT * * * * 63871106 GCTAGTGTAAGGCATGTCTAGGACATGCATCAACCA-CAATATGAGA 1 GCTAGTGTAAGACATGTCTAGGACATGCATC-AGCATCGAGATGAGA * * * * * * 63871152 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAACGAGA 1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCATCGAGATGAGA * * 63871200 GCTAGTGTAAGATATGTCTAGGACATGCATCAGCCTCGAGATGTA-A 1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCATCGAGATG-AGA * * * 63871246 GCTAGTGTAAGACATGTCTGGGGA-ATGCATCAG-ATATGAGAT--GT 1 GCTAGTGTAAGACATGTCT-AGGACATGCATCAGCAT-CGAGATGAGA * * * 63871290 GTTAGTGTAAGACCATGTCTAGGACATGGCATCAGCA-CGTATAGTG-GT 1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCATCG-AGA-TGAGA * * 63871338 GTCT-GTGTAAGACCATGTCTGGGACATGGCATC-GACA-CGGATATATGAGA 1 G-CTAGTGTAAGA-CATGTCTAGGACAT-GCATCAG-CATC-G--AGATGAGA 63871388 GCTAGTGTAAGACCATGTCTAGGACATG 1 GCTAGTGTAAGA-CATGTCTAGGACATG 63871416 GCGTCGGCCT Statistics Matches: 214, Mismatches: 30, Indels: 37 0.76 0.11 0.13 Matches are distributed among these distances: 44 14 0.07 45 11 0.05 46 64 0.30 47 34 0.16 48 56 0.26 49 7 0.03 50 28 0.13 ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24 Consensus pattern (46 bp): GCTAGTGTAAGACATGTCTAGGACATGCATCAGCATCGAGATGAGA Found at i:63871405 original size:50 final size:49 Alignment explanation
Indices: 63871107--63871417 Score: 177 Period size: 48 Copynumber: 6.6 Consensus size: 49 63871097 TATTTGTCTG * * * 63871107 CTAGTGTAAG-GCATGTCTAGGACAT-GCATCAACCAC-AATA-TGAGAG- 1 CTAGTGTAAGACCATGTCTAGGACATGGCATC-AGCACGTATAGTG-GAGT * * * * * * 63871153 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTGAAACG-AGAG- 1 CTAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGT-ATA-GTGGAGT * ** * 63871201 CTAGTGTAAGA-TATGTCTAGGACAT-GCATCAGC-C-TCGAGATGTAAG- 1 CTAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTATAG-TG-GAGT * * 63871247 CTAGTGTAAGA-CATGTCTGGGGA-AT-GCATCAG-A--TATGAGAT-GTGT 1 CTAGTGTAAGACCATGTCT-AGGACATGGCATCAGCACGTAT-AG-TGGAGT * 63871292 -TAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTATAGTGGTGT 1 CTAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTATAGTGGAGT * 63871340 CT-GTGTAAGACCATGTCTGGGACATGGCATC-GACACGGATATA-TGAGAG- 1 CTAGTGTAAGACCATGTCTAGGACATGGCATCAG-CAC-G-TATAGTG-GAGT 63871389 CTAGTGTAAGACCATGTCTAGGACATGGC 1 CTAGTGTAAGACCATGTCTAGGACATGGC 63871418 GTCGGCCTCG Statistics Matches: 212, Mismatches: 26, Indels: 50 0.74 0.09 0.17 Matches are distributed among these distances: 43 1 0.00 44 15 0.07 45 11 0.05 46 55 0.26 47 33 0.16 48 57 0.27 49 9 0.04 50 31 0.15 ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24 Consensus pattern (49 bp): CTAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGTATAGTGGAGT Found at i:63873069 original size:19 final size:20 Alignment explanation
Indices: 63873045--63873082 Score: 53 Period size: 19 Copynumber: 1.9 Consensus size: 20 63873035 GGTACCACCA 63873045 AAACAT-ATATCA-CATCTTT 1 AAACATCAT-TCATCATCTTT 63873064 AAACATCATTCATCATCTT 1 AAACATCATTCATCATCTT 63873083 ACCACCTTAT Statistics Matches: 17, Mismatches: 0, Indels: 3 0.85 0.00 0.15 Matches are distributed among these distances: 19 9 0.53 20 8 0.47 ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37 Consensus pattern (20 bp): AAACATCATTCATCATCTTT Found at i:63873409 original size:47 final size:49 Alignment explanation
Indices: 63873292--63873466 Score: 167 Period size: 47 Copynumber: 3.8 Consensus size: 49 63873282 AACCCGCCCC * * 63873292 TAAGTGAACTCGGACTCAACTCAACGAG--CGCG--G-C-GTTCGCATCCA 1 TAAGCGAACTCGGACTCAACTCAACGAGTTCG-GATGCCAGTT-ACATCCA ** 63873337 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C- 1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA * * * 63873385 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA 1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA * 63873430 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC 1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC 63873467 TCAACCATCC Statistics Matches: 109, Mismatches: 8, Indels: 22 0.78 0.06 0.16 Matches are distributed among these distances: 43 6 0.06 44 2 0.02 45 29 0.27 46 30 0.28 47 31 0.28 48 3 0.03 49 2 0.02 50 3 0.03 51 3 0.03 ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22 Consensus pattern (49 bp): TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA Found at i:63873455 original size:93 final size:92 Alignment explanation
Indices: 63873297--63873466 Score: 286 Period size: 93 Copynumber: 1.8 Consensus size: 92 63873287 GCCCCTAAGT * 63873297 GAACTCGGACTCAACTCAACGAGCGCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC 1 GAACTCGGACTCAACTCAACGAGCGCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC 63873362 GAGTTCGGATGCCTAGTTACATCTCAC 66 GAGTTCGGATGCCTAGTTACATCTCAC ** * * 63873389 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCGCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA 63873454 CGAGTTCGGATGC 65 CGAGTTCGGATGC 63873467 TCAACCATCC Statistics Matches: 72, Mismatches: 5, Indels: 1 0.92 0.06 0.01 Matches are distributed among these distances: 92 26 0.36 93 46 0.64 ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21 Consensus pattern (92 bp): GAACTCGGACTCAACTCAACGAGCGCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC GAGTTCGGATGCCTAGTTACATCTCAC Found at i:63873482 original size:46 final size:46 Alignment explanation
Indices: 63873291--63873475 Score: 143 Period size: 45 Copynumber: 4.0 Consensus size: 46 63873281 TAACCCGCCC ** * * * * 63873291 CTAAGTGAACTCGGACTCAACTCAACGAGCGCGGCGTTCGCATCCA- 1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT * 63873337 -TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT 1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT * * * * 63873384 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCA- 1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCAT 63873430 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT 1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT 63873475 C 1 C 63873476 CTAGTGACAT Statistics Matches: 110, Mismatches: 14, Indels: 30 0.71 0.09 0.19 Matches are distributed among these distances: 43 1 0.01 44 10 0.09 45 33 0.30 46 30 0.27 47 30 0.27 48 2 0.02 49 3 0.03 50 1 0.01 ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22 Consensus pattern (46 bp): CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT Found at i:63888657 original size:28 final size:28 Alignment explanation
Indices: 63888588--63888688 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63888578 GACAAGATTG * * * * 63888588 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 63888618 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 63888646 GCACTAAGTGTGCGAG-TTGAATACATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 63888675 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 63888689 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.05 28 24 0.38 29 19 0.30 30 18 0.28 ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:63890177 original size:19 final size:20 Alignment explanation
Indices: 63890153--63890190 Score: 53 Period size: 19 Copynumber: 1.9 Consensus size: 20 63890143 GGTACCACCA 63890153 AAACAT-ATATCA-CATCTTT 1 AAACATCAT-TCATCATCTTT 63890172 AAACATCATTCATCATCTT 1 AAACATCATTCATCATCTT 63890191 ACCACCTTAT Statistics Matches: 17, Mismatches: 0, Indels: 3 0.85 0.00 0.15 Matches are distributed among these distances: 19 9 0.53 20 8 0.47 ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37 Consensus pattern (20 bp): AAACATCATTCATCATCTTT Found at i:63890504 original size:46 final size:45 Alignment explanation
Indices: 63890419--63890540 Score: 172 Period size: 46 Copynumber: 2.7 Consensus size: 45 63890409 CGCCCCTAAG * * * 63890419 TGAACTCGGACTCAACTCAACAAGCTCGGGAGTTCGCATCCATAAA 1 TGAACTCGGACTCAACTCAACGAGTTC-GGAATTCGCATCCATAAA * * 63890465 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG 1 TGAACTCGGACTCAACTCAACGAGTTCGGA-ATTCGCATCCATAAA * 63890511 TGAACTCGGACTTAACTCAACGAGTTCGGA 1 TGAACTCGGACTCAACTCAACGAGTTCGGA 63890541 TGCTCAACCA Statistics Matches: 69, Mismatches: 6, Indels: 2 0.90 0.08 0.03 Matches are distributed among these distances: 45 3 0.04 46 66 0.96 ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22 Consensus pattern (45 bp): TGAACTCGGACTCAACTCAACGAGTTCGGAATTCGCATCCATAAA Found at i:63892325 original size:42 final size:42 Alignment explanation
Indices: 63892269--63892362 Score: 125 Period size: 42 Copynumber: 2.2 Consensus size: 42 63892259 GGACACGGGC * * * ** 63892269 GTGTCATGGCCGTGTGAGGGACACGGGCCATCGACATGGGCGT 1 GTGTCA-GGCCGTGTGAGGAACACGAGCCATCCACACAGGCGT 63892312 GTGTCAGGCCGTGTGAGGAACACGAGCCATCCACACAGGCGT 1 GTGTCAGGCCGTGTGAGGAACACGAGCCATCCACACAGGCGT * 63892354 GTGTTAGGC 1 GTGTCAGGC 63892363 TATGTGAAAG Statistics Matches: 45, Mismatches: 6, Indels: 1 0.87 0.12 0.02 Matches are distributed among these distances: 42 39 0.87 43 6 0.13 ACGTcount: A:0.19, C:0.24, G:0.38, T:0.18 Consensus pattern (42 bp): GTGTCAGGCCGTGTGAGGAACACGAGCCATCCACACAGGCGT Found at i:63893489 original size:42 final size:41 Alignment explanation
Indices: 63893442--63893593 Score: 162 Period size: 42 Copynumber: 3.6 Consensus size: 41 63893432 TACCACCCCA * * 63893442 ATGCCATATCCCAGATATGGTCTTGCATAGGATCT-AGTATCG 1 ATGCCATATCCCAGATATGGTCTTACAT-GAATCTCA-TATCG * * * * * 63893484 ATGCCAATAGCCCAGCTATAGTCTTACACGAAATCTCATATCA 1 ATGCC-ATATCCCAGATATGGTCTTACATG-AATCTCATATCG * * * 63893527 ATGCCATATCCCAGATACGGTCTTACATGAAGCCTCATATTG 1 ATGCCATATCCCAGATATGGTCTTACATGAA-TCTCATATCG 63893569 ATGCCATATCCCAGATATGGTCTTA 1 ATGCCATATCCCAGATATGGTCTTA 63893594 TACATAGTCT Statistics Matches: 90, Mismatches: 16, Indels: 8 0.79 0.14 0.07 Matches are distributed among these distances: 41 2 0.02 42 56 0.62 43 31 0.34 44 1 0.01 ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29 Consensus pattern (41 bp): ATGCCATATCCCAGATATGGTCTTACATGAATCTCATATCG Found at i:63897277 original size:16 final size:16 Alignment explanation
Indices: 63897245--63897276 Score: 55 Period size: 17 Copynumber: 1.9 Consensus size: 16 63897235 GATGTGTAAT 63897245 TTAGTAAAAGGAAAAA 1 TTAGTAAAAGGAAAAA 63897261 TTAGATAAAAGGAAAA 1 TTAG-TAAAAGGAAAA 63897277 TAGGCCTTGC Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 16 4 0.27 17 11 0.73 ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19 Consensus pattern (16 bp): TTAGTAAAAGGAAAAA Found at i:63901579 original size:28 final size:28 Alignment explanation
Indices: 63901510--63901610 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63901500 GACAAGATTG * * * * 63901510 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 63901540 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 63901568 GCACTAAGTGTGCGAG-CTGAATGTATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 63901597 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 63901611 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 2 0.03 28 24 0.38 29 20 0.31 30 18 0.28 ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:63901604 original size:29 final size:28 Alignment explanation
Indices: 63901539--63901610 Score: 110 Period size: 29 Copynumber: 2.5 Consensus size: 28 63901529 AAAATTGTAC * 63901539 AGCACTAAGTGTGCGAGTTTGATTATAT 1 AGCACTAAGTGTGCGAGTCTGATTATAT 63901567 AGCACTAAGTGTGCGAG-CTGAATGTATAT 1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT 63901596 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 63901611 GATTCACTAT Statistics Matches: 41, Mismatches: 1, Indels: 3 0.91 0.02 0.07 Matches are distributed among these distances: 27 2 0.05 28 19 0.46 29 20 0.49 ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29 Consensus pattern (28 bp): AGCACTAAGTGTGCGAGTCTGATTATAT Found at i:63903602 original size:6 final size:6 Alignment explanation
Indices: 63903584--63903703 Score: 77 Period size: 6 Copynumber: 19.3 Consensus size: 6 63903574 AAGAAACATT * * 63903584 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA 1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA * * * * 63903633 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATTAGT ATCAGGTA 1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A * 63903684 A-CAGA ATCAAAA ATCAGA AT 1 ATCAGA ATC-AGA ATCAGA AT 63903704 GTGAATGTAA Statistics Matches: 88, Mismatches: 14, Indels: 24 0.70 0.11 0.19 Matches are distributed among these distances: 5 6 0.07 6 65 0.74 7 14 0.16 8 3 0.03 ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20 Consensus pattern (6 bp): ATCAGA Found at i:63903628 original size:31 final size:31 Alignment explanation
Indices: 63903593--63903703 Score: 159 Period size: 31 Copynumber: 3.5 Consensus size: 31 63903583 TATCAGAACT * * * * 63903593 AGAATCAGAATCAGAATCAGAATTAGGTGAC 1 AGAATCAAAATCAGAATCAGTATCAGGTAAC * 63903624 AGAATCAGAATCAGAATCAGTATCAGGTAAC 1 AGAATCAAAATCAGAATCAGTATCAGGTAAC * 63903655 AGAATCAAAATCAGAATTAGTATCAGGTAAC 1 AGAATCAAAATCAGAATCAGTATCAGGTAAC 63903686 AGAATCAAAAATCAGAAT 1 AGAATC-AAAATCAGAAT 63903704 GTGAATGTAA Statistics Matches: 74, Mismatches: 5, Indels: 1 0.93 0.06 0.01 Matches are distributed among these distances: 31 63 0.85 32 11 0.15 ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20 Consensus pattern (31 bp): AGAATCAAAATCAGAATCAGTATCAGGTAAC Found at i:63904290 original size:27 final size:27 Alignment explanation
Indices: 63904111--63904332 Score: 234 Period size: 27 Copynumber: 8.3 Consensus size: 27 63904101 GGGGCAAAAT * * * * 63904111 GGTAATTTTACCCCACA-AGGTATCTC 1 GGTAATTCTACCCTACAGGGGTATTTC * * * 63904137 GGTAATTCCACCCTACAAGGGTATTTT 1 GGTAATTCTACCCTACAGGGGTATTTC * 63904164 AGTAATTCTACCCTACAGGGGTATTTC 1 GGTAATTCTACCCTACAGGGGTATTTC 63904191 GGTAATTCTACCCTACAGGGGTATTTC 1 GGTAATTCTACCCTACAGGGGTATTTC * * 63904218 AGTAATTCTACCCTACAGGGGTATTGC 1 GGTAATTCTACCCTACAGGGGTATTTC * 63904245 GATAATTCTACCCTACAGGGGTATTTC 1 GGTAATTCTACCCTACAGGGGTATTTC * ** * 63904272 GGTAATTCCA-CAAATCAGGGGTATTTT 1 GGTAATTCTACCCTA-CAGGGGTATTTC * ** * 63904299 GGTAATTTTA-CAAACTAGGGGTATTTT 1 GGTAATTCTACCCTAC-AGGGGTATTTC 63904326 GGTAATT 1 GGTAATT 63904333 TTATTGATCG Statistics Matches: 170, Mismatches: 23, Indels: 5 0.86 0.12 0.03 Matches are distributed among these distances: 26 17 0.10 27 153 0.90 ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34 Consensus pattern (27 bp): GGTAATTCTACCCTACAGGGGTATTTC Found at i:63904333 original size:27 final size:26 Alignment explanation
Indices: 63904261--63904361 Score: 112 Period size: 27 Copynumber: 3.8 Consensus size: 26 63904251 TCTACCCTAC * ** 63904261 AGGGGTATTTCGGTAATTCCACAAAT 1 AGGGGTATTTTGGTAATTTTACAAAT 63904287 CAGGGGTATTTTGGTAATTTTACAAACT 1 -AGGGGTATTTTGGTAATTTTACAAA-T *** 63904315 AGGGGTATTTTGGTAATTTTATTGAT 1 AGGGGTATTTTGGTAATTTTACAAAT * 63904341 CGAGGGTATTTTGGTAATTTT 1 AG-GGGTATTTTGGTAATTTT 63904362 GTAAACCAAG Statistics Matches: 65, Mismatches: 7, Indels: 4 0.86 0.09 0.05 Matches are distributed among these distances: 26 2 0.03 27 62 0.95 28 1 0.02 ACGTcount: A:0.26, C:0.08, G:0.25, T:0.42 Consensus pattern (26 bp): AGGGGTATTTTGGTAATTTTACAAAT Found at i:63904373 original size:27 final size:27 Alignment explanation
Indices: 63904263--63904393 Score: 109 Period size: 27 Copynumber: 4.9 Consensus size: 27 63904253 TACCCTACAG * ** * * * 63904263 GGGTATTTCGGTAATTCCACAAATCAG 1 GGGTATTTTGGTAATTTTATAAACCAA * * * 63904290 GGGTATTTTGGTAATTTTACAAACTAG 1 GGGTATTTTGGTAATTTTATAAACCAA ** * * 63904317 GGGTATTTTGGTAATTTTATTGATCGA 1 GGGTATTTTGGTAATTTTATAAACCAA * 63904344 GGGTATTTTGGTAATTTTGTAAACCAA 1 GGGTATTTTGGTAATTTTATAAACCAA * * * 63904371 GGGTATATTAGTAATTTTGTAAA 1 GGGTATTTTGGTAATTTTATAAA 63904394 TCGAGCGTAA Statistics Matches: 85, Mismatches: 19, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 27 85 1.00 ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40 Consensus pattern (27 bp): GGGTATTTTGGTAATTTTATAAACCAA Found at i:63904397 original size:54 final size:54 Alignment explanation
Indices: 63904290--63904794 Score: 175 Period size: 54 Copynumber: 9.4 Consensus size: 54 63904280 CACAAATCAG * * * * ** 63904290 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATTGATCGA 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATTAGTAATTTTATAAATCGA ** * 63904344 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATATTAGTAATTTTGTAAATCGA 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATTAGTAATTTTATAAATCGA * *** * * *** * * * * * 63904398 GCGTAAAATGGTAATTCTATAAATGTAGGGTAAAATGGTAATTCTATAAATCAA 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATTAGTAATTTTATAAATCGA **** * * ** * * * * * * ** * 63904452 GGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATCTTATAGA 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATTAGTAATTTTAT-AAATCGA * ** * * ** * 63904507 -AGTATTTCAGTAATTTTACAAATCGAGGGTAT-TTCAGTAATTTTGCAAATTGA 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATT-AGTAATTTTATAAATCGA * *** * * * 63904560 GGGTATTTCGGTAATTTTACAAATTGAGGATAT-TTGGGTAATTTTATAAATCGG 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATT-AGTAATTTTATAAATCGA * ** * * * 63904614 GGGTA-CTTGGTAATTTTA-AAGTCGAGGGTAT-TTCGGTAATTTTACAAATCGA 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATT-AGTAATTTTATAAATCGA ** * * ** * * 63904666 GGGTATTTCAGTACTTTTGCAAACTGAGGGTAT-TTAGGTAATTTTACAAATCAA 1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATATTA-GTAATTTTATAAATCGA *** * * * * * 63904720 GGGTATTTCAATAATTTTACAATCGACA--GTAT-TTCGGTAATTTTATAAACCGG 1 GGGTATTTTGGTAATTTTACAAACCA-AGGGTATATT-AGTAATTTTATAAATCGA * 63904773 GGGTACTTTGGTAATTTTACAA 1 GGGTATTTTGGTAATTTTACAA 63904795 CTGGGGGTAT Statistics Matches: 348, Mismatches: 95, Indels: 17 0.76 0.21 0.04 Matches are distributed among these distances: 52 33 0.09 53 61 0.18 54 250 0.72 55 4 0.01 ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38 Consensus pattern (54 bp): GGGTATTTTGGTAATTTTACAAACCAAGGGTATATTAGTAATTTTATAAATCGA Found at i:63904411 original size:27 final size:27 Alignment explanation
Indices: 63904352--63904496 Score: 157 Period size: 27 Copynumber: 5.4 Consensus size: 27 63904342 GAGGGTATTT * * * * * 63904352 TGGTAATTTTGTAAACCAAGGGTATAT 1 TGGTAATTCTGTAAATCGAGGGTAAAA * * * 63904379 TAGTAATTTTGTAAATCGAGCGTAAAA 1 TGGTAATTCTGTAAATCGAGGGTAAAA * 63904406 TGGTAATTCTATAAAT-GTAGGGTAAAA 1 TGGTAATTCTGTAAATCG-AGGGTAAAA * * 63904433 TGGTAATTCTATAAATCAAGGGTAAAA 1 TGGTAATTCTGTAAATCGAGGGTAAAA * * 63904460 CGATAATTCTGTAAATCGAGGGTAAAA 1 TGGTAATTCTGTAAATCGAGGGTAAAA 63904487 TGGTAATTCT 1 TGGTAATTCT 63904497 ATCTTATAGA Statistics Matches: 99, Mismatches: 17, Indels: 4 0.82 0.14 0.03 Matches are distributed among these distances: 26 1 0.01 27 98 0.99 ACGTcount: A:0.39, C:0.08, G:0.21, T:0.33 Consensus pattern (27 bp): TGGTAATTCTGTAAATCGAGGGTAAAA Found at i:63904538 original size:27 final size:27 Alignment explanation
Indices: 63904508--63904815 Score: 297 Period size: 27 Copynumber: 11.6 Consensus size: 27 63904498 TCTTATAGAA 63904508 GTATTTCAGTAATTTTACAAATCGAGG 1 GTATTTCAGTAATTTTACAAATCGAGG * * 63904535 GTATTTCAGTAATTTTGCAAATTGAGG 1 GTATTTCAGTAATTTTACAAATCGAGG * * 63904562 GTATTTCGGTAATTTTACAAATTGAGG 1 GTATTTCAGTAATTTTACAAATCGAGG * ** * * 63904589 ATATTTGGGTAATTTTATAAATCGGGG 1 GTATTTCAGTAATTTTACAAATCGAGG * * * 63904616 GTACTT-GGTAATTTTA-AAGTCGAGG 1 GTATTTCAGTAATTTTACAAATCGAGG * 63904641 GTATTTCGGTAATTTTACAAATCGAGG 1 GTATTTCAGTAATTTTACAAATCGAGG * * 63904668 GTATTTCAGTACTTTTGCAAA-CTGAGG 1 GTATTTCAGTAATTTTACAAATC-GAGG * 63904695 GTATTT-AGGTAATTTTACAAATCAAGG 1 GTATTTCA-GTAATTTTACAAATCGAGG * ** 63904722 GTATTTCAATAATTTTAC-AATCGACA 1 GTATTTCAGTAATTTTACAAATCGAGG * * * * 63904748 GTATTTCGGTAATTTTATAAACCGGGG 1 GTATTTCAGTAATTTTACAAATCGAGG * * * 63904775 GTACTTT-GGTAATTTTACAACT-GGGG 1 GTA-TTTCAGTAATTTTACAAATCGAGG * 63904801 GTATTTCAGTTATTT 1 GTATTTCAGTAATTT 63904816 GGTAAACTAA Statistics Matches: 235, Mismatches: 37, Indels: 19 0.81 0.13 0.07 Matches are distributed among these distances: 25 15 0.06 26 55 0.23 27 160 0.68 28 5 0.02 ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39 Consensus pattern (27 bp): GTATTTCAGTAATTTTACAAATCGAGG Done.