Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 214 of 770
Found at i:63904759 original size:133 final size:134
Alignment explanation
Indices: 63904508--63904815 Score: 381
Period size: 133 Copynumber: 2.3 Consensus size: 134
63904498 TCTTATAGAA
* * *
63904508 GTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTCGGTA
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTAGGTA
** *** *** **
63904573 ATTTTACAAATTGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTGGTAATTTTA-AAGTC
66 ATTTTACAAATCAAGGATATTTCAATAATTTTATAAATCGACAGTACTTGGTAATTTTATAAACC
63904637 GAGG
131 GAGG
*
63904641 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTACTTTTGCAAACTGAGGGTATTTAGGTA
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTAGGTA
* * *
63904706 ATTTTACAAATCAAGGGTATTTCAATAATTTTA-CAATCGACAGTATTTCGGTAATTTTATAAAC
66 ATTTTACAAATCAAGGATATTTCAATAATTTTATAAATCGACAGTACTT-GGTAATTTTATAAAC
*
63904770 CGGGG
130 CGAGG
* * *
63904775 GTACTTT-GGTAATTTTACAACT-GGGGGTATTTCAGTTATTT
1 GTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
63904816 GGTAAACTAA
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
132 10 0.07
133 114 0.76
134 23 0.15
135 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (134 bp):
GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTAGGTA
ATTTTACAAATCAAGGATATTTCAATAATTTTATAAATCGACAGTACTTGGTAATTTTATAAACC
GAGG
Found at i:63906651 original size:40 final size:40
Alignment explanation
Indices: 63906614--63906799 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
63906604 GCTACTCGTT
*
63906614 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
63906654 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
63906694 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
63906734 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
63906775 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63906800 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:63914685 original size:40 final size:40
Alignment explanation
Indices: 63914638--63914770 Score: 135
Period size: 40 Copynumber: 3.3 Consensus size: 40
63914628 GCTACTCGTT
*
63914638 CAAATGCCTTCGGGACATAGCCCAG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGATT-GAGTAACTCGCA
* * * *
63914678 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGATTGAGTAACTCGCA
* ** * *
63914718 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAACCCAGATTGAGTAACTCGCA
*
63914758 CGAATGCCTTCGG
1 CAAATGCCTTCGG
63914771 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.04
40 75 0.93
41 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCAGATTGAGTAACTCGCA
Found at i:63914771 original size:40 final size:39
Alignment explanation
Indices: 63914667--63914818 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 39
63914657 GCCCAGTTAG
**
63914667 AGTAACTCGCACAGATGCCTTCGGGA-CTTAACCCGGATTT
1 AGTAACTCGCACA-ATGCCTTC-GGATCTTAGTCCGGATTT
63914707 AGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTT
1 AGTAACTCGCAC-AATGCCTTCGGATCTTAGTCCGGATTT
* *
63914747 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCAGATAT
1 AGTAACTCGCAC-AATGCCTTCGGATCTTAGTCCGGATTT
* * *
63914787 AGTCACTTAGCACAAAGCCTTCGG-TACTTAGT
1 AGTAAC-TCGCACAATGCCTTCGGAT-CTTAGT
63914819 GTGACAGCCC
Statistics
Matches: 100, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
39 4 0.04
40 90 0.90
41 6 0.06
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (39 bp):
AGTAACTCGCACAATGCCTTCGGATCTTAGTCCGGATTT
Found at i:63916401 original size:29 final size:29
Alignment explanation
Indices: 63916368--63916499 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
63916358 GTGACGAGAT
*
63916368 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
63916397 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
63916426 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
63916455 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
63916484 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
63916500 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:63921190 original size:6 final size:6
Alignment explanation
Indices: 63921171--63921258 Score: 63
Period size: 6 Copynumber: 14.3 Consensus size: 6
63921161 TATAAGAACT
* * *
63921171 AGAATC AAAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
63921220 AGTATC AGGTAA-C AAAATC AAAATC AGAATC AGTATC AG
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AG
63921259 GTAACAGAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.05
6 55 0.85
7 5 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:63921214 original size:31 final size:31
Alignment explanation
Indices: 63921171--63921281 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
63921161 TATAAGAACT
* * *
63921171 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
63921202 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
63921233 AAAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
63921264 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
63921282 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 60 0.85
32 11 0.15
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:63921747 original size:27 final size:27
Alignment explanation
Indices: 63921717--63921910 Score: 164
Period size: 27 Copynumber: 7.2 Consensus size: 27
63921707 GGTATCTCGA
* * *
63921717 TAATTCCACCCTACAAGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTTCG
*
63921744 TAATTCTACCCTACAGGGATA-TTTCG
1 TAATTCTACCCTACAGGGGTATTTTCG
63921770 ATAATTCTACCCTACAGGGGTA-TTTCGG
1 -TAATTCTACCCTACAGGGGTATTTTC-G
* *
63921798 TACTTCTACCCTACAGGGGTA-TTGCG
1 TAATTCTACCCTACAGGGGTATTTTCG
*
63921824 ATAATTCTACCCTACAGGGGTATTTTGG
1 -TAATTCTACCCTACAGGGGTATTTTCG
* * ** *
63921852 TCATTCCA-CAAATCAGGGGTATTTTGG
1 TAATTCTACCCTA-CAGGGGTATTTTCG
* ** *
63921879 TAATTTTA-CAAACCAGGGGTATTTTGG
1 TAATTCTACCCTA-CAGGGGTATTTTCG
63921906 TAATT
1 TAATT
63921911 TTATTGATCG
Statistics
Matches: 144, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 7 0.05
27 133 0.92
28 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTTCG
Found at i:63921783 original size:54 final size:53
Alignment explanation
Indices: 63921690--63921849 Score: 212
Period size: 54 Copynumber: 3.0 Consensus size: 53
63921680 GGGCAAAATG
* * * * * *
63921690 GTAATTTTACCCCACAAGGTATCTCGATAATTCCACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTA
**
63921743 GTAATTCTACCCTACAGGGATATTTCGATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGG-TATTTCGATAATTCTACCCTACAGGGGTATTTTA
* *
63921797 GTACTTCTACCCTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTTT
1 GTAATTCTACCCTACA-GGGTATTTCGATAATTCTACCCTACAGGGGTATTTT
63921850 GGTCATTCCA
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 16 0.17
54 75 0.80
55 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (53 bp):
GTAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTA
Found at i:63921896 original size:54 final size:54
Alignment explanation
Indices: 63921838--63921956 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
63921828 TTCTACCCTA
*
63921838 CAGGGGTATTTTGGTCATTCCACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTCCACAAATCGA-GGGTATTTTGGTAATTTTACAAAC
** *** **
63921892 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTCCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
*
63921946 CAAGGGTATTT
1 CAGGGGTATTT
63921957 CAGTAATTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 54 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTCCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:63921911 original size:27 final size:27
Alignment explanation
Indices: 63921838--63921966 Score: 125
Period size: 27 Copynumber: 4.8 Consensus size: 27
63921828 TTCTACCCTA
* ** *
63921838 CAGGGGTATTTTGGTCATTCCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
63921865 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*** *
63921892 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
63921919 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* **
63921946 CAAGGGTATTTCAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
63921967 GTAAATCGAG
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.99
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:63921975 original size:54 final size:54
Alignment explanation
Indices: 63921868--63922321 Score: 225
Period size: 54 Copynumber: 8.4 Consensus size: 54
63921858 CACAAATCAG
* ** **
63921868 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
** *
63921922 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
* *** * * *** ** * * *
63921976 GCGTAAAATGGTAATTCTATAAATGTAGGGTAAAAT-GGTAATTCTATAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGT-ATTTCAGTAATTTTATAAATCGA
**** * * ** * * ** * * ** *
63922030 GGGTAAAACGATAATTCTGTAAATCAAGTGTAAAAT-GGTAATTCTATCTTATAGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGT-ATTTCAGTAATTTTAT-AAATCGA
* ** * ** *
63922085 -AGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAATTGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
* * * * **
63922138 GGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATC-A
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
* **** * *
63922191 GGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTCGGTAATTTTACAAATCGA
1 -GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
** * ** * *
63922246 GGGTATTTCAGCAATTTTACAAACTGAGGGTATTT-AGGTAATTTTATAAACCGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCA-GTAATTTTATAAATCGA
*
63922300 GGGTACTTTGGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
63922322 CTGGGGGTAT
Statistics
Matches: 310, Mismatches: 83, Indels: 14
0.76 0.20 0.03
Matches are distributed among these distances:
53 7 0.02
54 297 0.96
55 6 0.02
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
Found at i:63921988 original size:81 final size:81
Alignment explanation
Indices: 63921903--63922209 Score: 237
Period size: 81 Copynumber: 3.8 Consensus size: 81
63921893 AGGGGTATTT
* ** * *
63921903 TGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTG
1 TGGTAATTCTATAAATCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTG
63921968 TAAATCGAGCGTAAAA
66 TAAATCGAGCGTAAAA
*** * *** *
63921984 TGGTAATTCTATAAAT-GTAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC-GATAATTC
1 TGGTAATTCTATAAATCG-AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCAG-TAATTT
* *
63922047 TGTAAATCAAGTGTAAAA
64 TGTAAATCGAGCGTAAAA
** * * ** *
63922065 TGGTAATTCTATCTTATAGA-AGTATTTCAGTAATTTTACAAATCAAGGGTATTTCAGTAATTTT
1 TGGTAATTCTAT-AAATCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTT
* * * **
63922129 GCAAATTGAGGGT-ATT
65 GTAAATCGAGCGTAAAA
* * * * * *
63922145 TCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCAGGGGTACTTT-GGTAATTT
1 T-GGTAATTCTATAAATCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTA-TTTCAGTAATTT
63922209 T
64 T
63922210 ACAAGTTGAG
Statistics
Matches: 171, Mismatches: 47, Indels: 16
0.73 0.20 0.07
Matches are distributed among these distances:
80 8 0.05
81 155 0.91
82 7 0.04
83 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTG
TAAATCGAGCGTAAAA
Found at i:63921989 original size:27 final size:27
Alignment explanation
Indices: 63921959--63922076 Score: 146
Period size: 27 Copynumber: 4.4 Consensus size: 27
63921949 GGGTATTTCA
* * * *
63921959 GTAATTTTGTAAATCGAGCGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
**
63921986 GTAATTCTATAAATGTAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
*
63922013 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * *
63922040 ATAATTCTGTAAATCAAGTGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
63922067 GTAATTCTAT
1 GTAATTCTAT
63922077 CTTATAGAAG
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.33
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAAAATG
Found at i:63922116 original size:27 final size:27
Alignment explanation
Indices: 63922086--63922342 Score: 247
Period size: 27 Copynumber: 9.6 Consensus size: 27
63922076 TCTTATAGAA
*
63922086 GTATTTCAGTAATTTTACAAATCAAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
63922113 GTATTTCAGTAATTTTGCAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
63922140 GTATTTCGGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* ** *
63922167 ATATTTGGGTAATTTTATAAATC-AGGG
1 GTATTTCAGTAATTTTACAAATCGA-GG
* * *
63922194 GTACTTT-GGTAATTTTACAAGTTGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
*
63922221 GTATTTCGGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
63922248 GTATTTCAGCAATTTTACAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* * *
63922275 GTATTT-AGGTAATTTTATAAACCGGGG
1 GTATTTCA-GTAATTTTACAAATCGAGG
* * *
63922302 GTACTTT-GGTAATTTTACAACT-GGGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
*
63922328 GTATTTTAGTAATTT
1 GTATTTCAGTAATTT
63922343 GGTAAACTAA
Statistics
Matches: 196, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
25 3 0.02
26 20 0.10
27 165 0.84
28 8 0.04
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:63923984 original size:30 final size:30
Alignment explanation
Indices: 63923950--63924010 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63923940 TCATTAACTC
63923950 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
63923980 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
63924010 A
1 A
63924011 GGCTCGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:63926501 original size:22 final size:23
Alignment explanation
Indices: 63926476--63926570 Score: 92
Period size: 24 Copynumber: 4.2 Consensus size: 23
63926466 CTGAGATGGC
63926476 ATTCTGATTT-CCTTTATGGTGT
1 ATTCTGATTTGCCTTTATGGTGT
*
63926498 ATTCTGATTTTGCCCTTATGGTGT
1 ATTCTGA-TTTGCCTTTATGGTGT
63926522 ACTT-TGATTTGGCCTTTAT-G-GT
1 A-TTCTGATTT-GCCTTTATGGTGT
* * *
63926544 ATTCTG-CTAGCCTTTATGGCGT
1 ATTCTGATTTGCCTTTATGGTGT
63926566 ATTCT
1 ATTCT
63926571 TAGGCCATCT
Statistics
Matches: 62, Mismatches: 4, Indels: 14
0.77 0.05 0.17
Matches are distributed among these distances:
20 8 0.13
21 4 0.06
22 19 0.31
23 7 0.11
24 22 0.35
25 2 0.03
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (23 bp):
ATTCTGATTTGCCTTTATGGTGT
Found at i:63931157 original size:47 final size:47
Alignment explanation
Indices: 63931056--63931181 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 47
63931046 AATCGATAAG
* * * * *
63931056 TACCTATACCATAGCCCGTAGTCAAGTCAAGTTAACTAATCCTGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTAATCCTGGAA
* * **
63931103 TATCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCCTCTCT-GAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTAATC-CTGGAA
**
63931150 TACCTATATAATGGCCCGTAGCCAAATCAAGG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGG
63931182 CATTATTCGC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
47 63 0.97
48 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTAATCCTGGAA
Found at i:63932993 original size:22 final size:22
Alignment explanation
Indices: 63932965--63933041 Score: 59
Period size: 22 Copynumber: 3.5 Consensus size: 22
63932955 CCTTTATCCG
63932965 TCCTGTCGACTACGTTGAGTCC
1 TCCTGTCGACTACGTTGAGTCC
* * *
63932987 TCCTGTCTA-TGACATTGAGTCG
1 TCCTGTCGACT-ACGTTGAGTCC
* **
63933009 TCCTGTCTACGGCGTTGAG-CC
1 TCCTGTCGACTACGTTGAGTCC
*
63933030 GTCCTGTTGACT
1 -TCCTGTCGACT
63933042 TAGTGCGCAA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
21 2 0.05
22 40 0.95
ACGTcount: A:0.13, C:0.29, G:0.25, T:0.34
Consensus pattern (22 bp):
TCCTGTCGACTACGTTGAGTCC
Found at i:63933224 original size:27 final size:27
Alignment explanation
Indices: 63933176--63933228 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63933166 GCATCTGATA
*
63933176 CTGATTCTGTACTAGGCTTAGGCCCAC
1 CTGATTCTGTAATAGGCTTAGGCCCAC
*
63933203 CTGATTCTGTTAATGGGC-TAGGCCCA
1 CTGATTCTG-TAATAGGCTTAGGCCCA
63933229 ACTGTTACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTAATAGGCTTAGGCCCAC
Found at i:63942635 original size:40 final size:39
Alignment explanation
Indices: 63942475--63942637 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
63942465 TGTGTATGAA
*
63942475 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
63942514 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
63942553 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
63942592 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
63942632 TGTGCG
1 TGTGCG
63942638 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:63942653 original size:40 final size:39
Alignment explanation
Indices: 63942475--63942668 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
63942465 TGTGTATGAA
* *
63942475 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
63942514 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
63942553 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
63942592 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
63942632 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
63942669 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:63950568 original size:40 final size:39
Alignment explanation
Indices: 63950401--63950583 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
63950391 AATGTTCGAG
63950401 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
63950440 TGATATCCGGGCTAAGCCCGAAGACAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
63950479 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
63950518 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
63950558 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63950584 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 86 0.69
40 39 0.31
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:63953674 original size:40 final size:40
Alignment explanation
Indices: 63953637--63953860 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
63953627 GCTACTCGTT
*
63953637 CAAATGCCTTCGAGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCG-GATCTTAGCCCGGATT-TAGTAACTCGCA
* *
63953677 CAGATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
*
63953717 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
63953757 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCG-A
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
63953796 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
63953837 CAAA-GCCTTCGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGATCTTAGCCCGGA
63953861 CATCATTCGA
Statistics
Matches: 167, Mismatches: 12, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
39 46 0.28
40 114 0.68
41 7 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:63961683 original size:40 final size:40
Alignment explanation
Indices: 63961609--63961833 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
63961599 GCTACTCGTT
*
63961609 CAAATGCCTTCGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATT-TAGTAACTCGCA
* *
63961648 CAGATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
*
63961688 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
63961728 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
63961768 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
63961809 CAAA-GCCTTCGGATCTTAGCCCGGA
1 CAAATGCCTTCGGATCTTAGCCCGGA
63961834 CATCATTCGA
Statistics
Matches: 168, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.08
40 147 0.88
41 8 0.05
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:63965815 original size:28 final size:27
Alignment explanation
Indices: 63965784--63965846 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
63965774 AATTACTAGA
* *
63965784 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
*
63965812 ATACCCCT-AGGTGCAAAATGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
*
63965838 TTACCCCTA
1 ATACCCCTA
63965847 GGGTTAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 20 0.67
27 2 0.07
28 8 0.27
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:63968365 original size:43 final size:44
Alignment explanation
Indices: 63968221--63968377 Score: 130
Period size: 43 Copynumber: 3.6 Consensus size: 44
63968211 CGTGTTTTTG
* * * * *
63968221 TGTAAGGCCATGTCTGGGATGCTGGCATCGATTTGTGATTTACG
1 TGTAAGACCACGTCTGGGATGCTGGCATCGATATGTGAGTTACA
* *
63968265 TGTAAGACCTTC-TCTGGGA--CATCGGCATC-ATATATGAGTT-CA
1 TGTAAGACC-ACGTCTGGGATGC-T-GGCATCGATATGTGAGTTACA
* **
63968307 AGTAAGACCTTGTCTGGGATAG-TGGCATCGATATGTGA-TTACA
1 TGTAAGACCACGTCTGGGAT-GCTGGCATCGATATGTGAGTTACA
*
63968350 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGCTGGCAT
63968378 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 13, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
41 1 0.01
42 26 0.29
43 42 0.47
44 21 0.23
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGATGCTGGCATCGATATGTGAGTTACA
Found at i:63979128 original size:17 final size:17
Alignment explanation
Indices: 63979106--63979144 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
63979096 TCAGTTTTCA
63979106 CATAAACTCCACTATCT
1 CATAAACTCCACTATCT
63979123 CATAAACTCCACTATCT
1 CATAAACTCCACTATCT
63979140 CATAA
1 CATAA
63979145 TCATTGCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.38, C:0.33, G:0.00, T:0.28
Consensus pattern (17 bp):
CATAAACTCCACTATCT
Found at i:63981691 original size:39 final size:39
Alignment explanation
Indices: 63981648--63981791 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
63981638 GAATGTTCGA
*
63981648 GTGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
63981687 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63981726 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63981765 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63981792 CTTTGTGCGG
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 85 0.90
40 9 0.10
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63981738 original size:78 final size:79
Alignment explanation
Indices: 63981649--63981819 Score: 254
Period size: 78 Copynumber: 2.2 Consensus size: 79
63981639 AATGTTCGAG
63981649 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
63981713 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* * *
63981727 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
63981792 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** *
63981806 CCATAACCGGGCTA
1 TGATATCCGGGCTA
63981820 TGTCCCGAAG
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
78 52 0.63
79 31 0.37
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63984660 original size:37 final size:37
Alignment explanation
Indices: 63984610--63984700 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
63984600 TTATTACGAA
*
63984610 GTCTTACCTGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
63984647 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
63984684 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
63984701 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:63984798 original size:48 final size:48
Alignment explanation
Indices: 63984740--63984843 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
63984730 TGTTACAACA
63984740 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
63984788 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
63984836 TTCACATT
1 TTCACATT
63984844 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:63984936 original size:96 final size:96
Alignment explanation
Indices: 63984835--63985072 Score: 422
Period size: 96 Copynumber: 2.5 Consensus size: 96
63984825 CACACATATA
* * *
63984835 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATGCACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACCTTCACATTCATCACA
63984900 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
* *
63984931 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATATACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACCTTCACATTCATCACA
*
63984996 TTGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
63985027 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATA
63985073 GGCCATTAGG
Statistics
Matches: 136, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 136 1.00
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACTC
Found at i:63984943 original size:47 final size:47
Alignment explanation
Indices: 63984835--63985070 Score: 375
Period size: 47 Copynumber: 4.9 Consensus size: 47
63984825 CACACATATA
* *
63984835 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATGCAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA--CTC
* *
63984884 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
63984931 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATA-TAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACA--TATATACT-C
63984980 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
*
63985027 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
63985071 TAGGCCATTA
Statistics
Matches: 178, Mismatches: 5, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
47 88 0.49
48 2 0.01
49 88 0.49
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (47 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
Found at i:63985078 original size:28 final size:28
Alignment explanation
Indices: 63985045--63985100 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
63985035 TCATCACATT
63985045 GGCCATTAGGCCTTATCACATGTATATA
1 GGCCATTAGGCCTTATCACATGTATATA
63985073 GGCCATTAGGCCTTATCACATGTATATA
1 GGCCATTAGGCCTTATCACATGTATATA
63985101 CACTTTCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (28 bp):
GGCCATTAGGCCTTATCACATGTATATA
Found at i:63985079 original size:75 final size:76
Alignment explanation
Indices: 63984998--63985149 Score: 261
Period size: 77 Copynumber: 2.0 Consensus size: 76
63984988 TCATCACATT
* *
63984998 GGCCATTAGGCCTTATCACA-TATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
1 GGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTATC
*
63985062 ACATGTATATA
66 ACATATATATA
63985073 GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTAT
1 GGCCATTAGGCCTTATCACA-GTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTAT
63985138 CACATATATATA
65 CACATATATATA
63985150 TACACTTTCA
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
75 20 0.28
77 52 0.72
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (76 bp):
GGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTATC
ACATATATATA
Found at i:63985090 original size:124 final size:125
Alignment explanation
Indices: 63984949--63985200 Score: 434
Period size: 124 Copynumber: 2.0 Consensus size: 125
63984939 TCATCACATT
* *
63984949 GGCCATTAGGCCTTATCACATGTATATATACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
1 GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTAT
* *
63985014 CAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATA
66 CACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATA
63985073 GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTAT
1 GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTAT
63985138 CACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATA
66 CAC--A-ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATA
63985201 CACTTTCACA
Statistics
Matches: 120, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
124 66 0.55
128 54 0.45
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (125 bp):
GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTAT
CACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATA
Found at i:63985176 original size:51 final size:49
Alignment explanation
Indices: 63985073--63985247 Score: 305
Period size: 49 Copynumber: 3.5 Consensus size: 49
63985063 CATGTATATA
* *
63985073 GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAGT
1 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
63985122 GGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATT
1 GGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCACATT
63985173 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
1 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
*
63985222 GGCCATTAGGCCGTATCACATATATA
1 GGCCATTAGGCCTTATCACATATATA
63985248 CATCTCATAC
Statistics
Matches: 121, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
49 74 0.61
51 47 0.39
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (49 bp):
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
Found at i:63985266 original size:100 final size:100
Alignment explanation
Indices: 63985073--63985258 Score: 302
Period size: 100 Copynumber: 1.9 Consensus size: 100
63985063 CATGTATATA
* *
63985073 GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAGTGGCCATTAGGCCTTAT
1 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGTGGCCATTAGGCCGTAT
* * *
63985138 CACATATATATATACACTTTCACATTCATCACATT
66 CACATATATACATACACATACACATTCATCACATT
*
63985173 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTAT
1 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGTGGCCATTAGGCCGTAT
*
63985238 CACATATATACAT-CTCATACA
66 CACATATATACATACACATACA
63985259 TATTTCATAT
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 5 0.06
100 74 0.94
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (100 bp):
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAGTGGCCATTAGGCCGTAT
CACATATATACATACACATACACATTCATCACATT
Found at i:63988299 original size:13 final size:13
Alignment explanation
Indices: 63988283--63988315 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63988273 TTTAATTAAA
*
63988283 TTAGTTAATTAGT
1 TTAGATAATTAGT
63988296 TTAGATAATTAGT
1 TTAGATAATTAGT
63988309 TTA-ATAA
1 TTAGATAA
63988316 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:63989864 original size:15 final size:15
Alignment explanation
Indices: 63989827--63989899 Score: 78
Period size: 15 Copynumber: 4.9 Consensus size: 15
63989817 GAGATGACAT
*
63989827 GAAAACTAAGATAAA
1 GAAATCTAAGATAAA
* *
63989842 -AATGTCTAGGATAAA
1 GAA-ATCTAAGATAAA
63989857 GAAATCTAAGATAAA
1 GAAATCTAAGATAAA
*
63989872 GAAATCCAAGATATAA
1 GAAATCTAAGATA-AA
63989888 -AAATCTAAGATA
1 GAAATCTAAGATA
63989900 CAATTTCATA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
14 2 0.04
15 42 0.88
16 4 0.08
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.21
Consensus pattern (15 bp):
GAAATCTAAGATAAA
Found at i:63994292 original size:29 final size:29
Alignment explanation
Indices: 63994259--63994418 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
63994249 GTGACGAGAT
63994259 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63994288 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63994317 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
63994346 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
63994375 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
63994404 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
63994419 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64002336 original size:29 final size:29
Alignment explanation
Indices: 64002303--64002433 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
64002293 GTGACGAGAT
64002303 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64002332 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
64002361 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
64002390 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
64002419 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
64002434 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64004725 original size:19 final size:19
Alignment explanation
Indices: 64004701--64004748 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
64004691 TTTTGGGCTT
* *
64004701 AATGGGCCGAAAACGGGCC
1 AATGGGCCAAAAACGGCCC
*
64004720 AATGGGCCAAAAATGGCCC
1 AATGGGCCAAAAACGGCCC
64004739 AATGGGCCAA
1 AATGGGCCAA
64004749 TGGGCCTACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.35, C:0.25, G:0.31, T:0.08
Consensus pattern (19 bp):
AATGGGCCAAAAACGGCCC
Found at i:64010843 original size:8 final size:8
Alignment explanation
Indices: 64010830--64010866 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
64010820 GGCCGAAAAC
64010830 GGGCCAAT
1 GGGCCAAT
64010838 GGGCCAAT
1 GGGCCAAT
64010846 GGGCCAAT
1 GGGCCAAT
64010854 GGGCCAAT
1 GGGCCAAT
64010862 GGGCC
1 GGGCC
64010867 CACTTTGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.22, C:0.27, G:0.41, T:0.11
Consensus pattern (8 bp):
GGGCCAAT
Found at i:64011240 original size:71 final size:67
Alignment explanation
Indices: 64011100--64011241 Score: 158
Period size: 67 Copynumber: 2.1 Consensus size: 67
64011090 GAGGAAGCAT
* * * ** * *
64011100 TCTGGCAGCCTCGCTGCAGTCTGGTGGCCTCGCCACTTATATCTGTTCTGGTGATTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGCTGGCCTCGCCAATTATATCTGTTCTGGTGACCTAGCCACAA
64011165 TA
66 TA
* *
64011167 TCTGGCAGCCTCGCTGCAATCTGCTGGCTTCGCGACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGCTGGCCTCGC--CA-AT-TATATCTGTTCTGGTGACCTAGCC
*
64011232 ATAATA
62 ACAATA
64011238 TCTG
1 TCTG
64011242 TATCTGGTGA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
67 30 0.49
69 2 0.03
70 1 0.02
71 28 0.46
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGCTGGCCTCGCCAATTATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:64024033 original size:6 final size:6
Alignment explanation
Indices: 64023967--64024134 Score: 67
Period size: 6 Copynumber: 27.3 Consensus size: 6
64023957 AAGAAACATT
* * * * * *
64023967 ATCAGA A-CTAGA ATTAGA ATTAGA ATCAAA ATTAAA ATTAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
64024015 ATTAG- GTGACAGA ATCAGA ATCTGA ATCAGT ATCAGGTA A-CCGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
64024065 ACCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
64024116 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
64024135 GTGAATGCAA
Statistics
Matches: 120, Mismatches: 28, Indels: 28
0.68 0.16 0.16
Matches are distributed among these distances:
5 8 0.07
6 98 0.82
7 10 0.08
8 4 0.03
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:64024061 original size:31 final size:31
Alignment explanation
Indices: 64024000--64024134 Score: 198
Period size: 31 Copynumber: 4.4 Consensus size: 31
64023990 AATCAAAATT
* * * *
64024000 AAAATTAGAATCAGAATTAGGTGACAGAATC
1 AAAATCAGAATCAGTATCAGGTAACAGAATC
* * *
64024031 AGAATCTGAATCAGTATCAGGTAACCGAATC
1 AAAATCAGAATCAGTATCAGGTAACAGAATC
*
64024062 AAAACCAGAATCAGTATCAGGTAACAGAATC
1 AAAATCAGAATCAGTATCAGGTAACAGAATC
64024093 AAAATCAGAATCAGTATCAGGTAACAGAATC
1 AAAATCAGAATCAGTATCAGGTAACAGAATC
64024124 AAAATCAGAAT
1 AAAATCAGAAT
64024135 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 92 1.00
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (31 bp):
AAAATCAGAATCAGTATCAGGTAACAGAATC
Found at i:64024091 original size:19 final size:19
Alignment explanation
Indices: 64024067--64024124 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
64024057 GAATCAAAAC
64024067 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
64024086 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
64024098 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
64024117 CAGAATCA
1 CAGAATCA
64024125 AAATCAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:64026120 original size:93 final size:93
Alignment explanation
Indices: 64026010--64026183 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
64026000 GCCCATAAGT
* * * *
64026010 GAACTCGGACTCAACTCAATGAGCTCAGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
64026075 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
64026103 GAACTTGGACTCAACTCAACGAGTTCGGGCGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
64026168 CGAGTTTGGATGCCTA
66 CGAGCTCGGATGCCTA
64026184 AATATCCCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:64026173 original size:46 final size:46
Alignment explanation
Indices: 64026002--64026171 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
64025992 TGTAACCCGC
* * * *
64026002 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCAGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTAGCAT
*
64026048 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGCTAGCAT
* *** * * *
64026094 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGGCGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCGCTAGCAT
*
64026141 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
64026172 TTTGGATGCC
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 63 0.63
47 33 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTAGCAT
Found at i:64027504 original size:27 final size:27
Alignment explanation
Indices: 64027466--64027837 Score: 519
Period size: 27 Copynumber: 13.8 Consensus size: 27
64027456 GGATATTACA
*
64027466 GTAAAACAGTAATTTTGTAAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
* *
64027493 GTAAAATAGTAATTTTGTAAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
* * *
64027520 GTCAAACAGTAATTTTGTCAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
*
64027547 GTAAAACAGTAATTCTGTCAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
*
64027574 GTAAAACAGTAATTCTGTCAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
64027601 GTAAAACAGTAATTCTGTAAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
* * *
64027628 GTAAAATAGTAATTTTGTAAATTGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
*
64027655 GTAAAATAGTAATTCTGTAAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
* * * *
64027682 GTAAAATAGAAATTTTGTAAATTGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
* * *
64027709 GTAAAACAGTAATTTTATAAATTGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
64027736 GTAAAACAGTAATTCTGTAAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
* * *
64027763 GTAAAACGGTAATTTTGTAAATTGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
*
64027790 GTAAAACGGTAATTCTGTAAATCGAGG
1 GTAAAACAGTAATTCTGTAAATCGAGG
* *
64027817 GTAAAATAGTAGTTCTGTAAA
1 GTAAAACAGTAATTCTGTAAA
64027838 CTAAAGTATT
Statistics
Matches: 316, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 316 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAAAACAGTAATTCTGTAAATCGAGG
Found at i:64028023 original size:17 final size:18
Alignment explanation
Indices: 64028003--64028048 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
64027993 AACTAATCCA
64028003 ATTGGGCCCATA-GGCCC
1 ATTGGGCCCATATGGCCC
*
64028020 ATTGGGCCCACATGGCCC
1 ATTGGGCCCATATGGCCC
* *
64028038 TTTCGGCCCAT
1 ATTGGGCCCAT
64028049 TGCGACCCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.15, C:0.37, G:0.26, T:0.22
Consensus pattern (18 bp):
ATTGGGCCCATATGGCCC
Found at i:64031040 original size:29 final size:29
Alignment explanation
Indices: 64031007--64031109 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
64030997 CCTCCGAACT
** * * *
64031007 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
64031036 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64031065 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64031094 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64031110 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64039004 original size:29 final size:29
Alignment explanation
Indices: 64038921--64039018 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
64038911 CCCTCGAACT
* *
64038921 CGCACAC--AGTGCCGTAT-TTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64038947 TGCACACTTAGTGCC--ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64038974 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64039003 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64039019 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
26 8 0.12
27 22 0.34
28 6 0.09
29 28 0.44
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64045852 original size:27 final size:27
Alignment explanation
Indices: 64045814--64046146 Score: 187
Period size: 27 Copynumber: 12.3 Consensus size: 27
64045804 TTAGTTTACC
* * *
64045814 AAATTACTAAAATGCCTTCAATTTGTA
1 AAATTACCAAAATACCTTCGATTTGTA
* * *
64045841 AAATTACCAAAATACC-CCTGGTTTGTG
1 AAATTACCAAAATACCTTC-GATTTGTA
* * *
64045868 AAATTACCAAAATACC-CCTAATTTGTG
1 AAATTACCAAAATACCTTC-GATTTGTA
** * *
64045895 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCTTCGATTTGTA
*
64045922 AAATTACCAAAATACCCTT-GATTTGTG
1 AAATTACCAAAATA-CCTTCGATTTGTA
** * *
64045949 AAATTACTGAAATACCCTT-AACTTGTA
1 AAATTACCAAAATA-CCTTCGATTTGTA
* **
64045976 AAATTACCAAAATACCCTT-GGTTTACA
1 AAATTACCAAAATA-CCTTCGATTTGTA
* *
64046003 AAATTACCAAAATACC-CCTGATTTGTG
1 AAATTACCAAAATACCTTC-GATTTGTA
* *
64046030 AAATTACCGAAATACCCTC-AGTTTG-A
1 AAATTACCAAAATACCTTCGA-TTTGTA
*** **
64046056 AAATTAATGAAATACCACCGATTTGTA
1 AAATTACCAAAATACCTTCGATTTGTA
* * * *
64046083 AAATTACTAAAATACCCTCAAATTGTAA
1 AAATTACCAAAATACCTTCGATTTGT-A
* ** **
64046111 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACCAAAATACCTTCGATTTGTA
64046138 AAATTACCA
1 AAATTACCA
64046147 TTTTACCCTC
Statistics
Matches: 240, Mismatches: 56, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
26 23 0.10
27 192 0.80
28 25 0.10
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCTTCGATTTGTA
Found at i:64045880 original size:54 final size:54
Alignment explanation
Indices: 64045814--64046146 Score: 264
Period size: 54 Copynumber: 6.2 Consensus size: 54
64045804 TTAGTTTACC
* * * *
64045814 AAATTACTAAAATGCCTTCAATTTGTAAAATTACCAAAATACCCCTGGTTTGTG
1 AAATTACCAAAATACCTTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * ** *
64045868 AAATTACCAAAATACC-CCTAATTTGTGAAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCTTC-AATTTGTAAAATTACCAAAATACCCCT-GATTTGTA
* * ** * * *
64045922 AAATTACCAAAATACCCTT-GATTTGTGAAATTACTGAAATACCCTTAACTTGTA
1 AAATTACCAAAATA-CCTTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTA
** ** *
64045976 AAATTACCAAAATACCCTT-GGTTTACAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATA-CCTTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * * ***
64046030 AAATTACCGAAATACCCTCAGTTTG-AAAATTAATGAAATACCACC-GATTTGTA
1 AAATTACCAAAATACCTTCAATTTGTAAAATTACCAAAATACC-CCTGATTTGTA
* * * * * **
64046083 AAATTACTAAAATACCCTCAAATTGTAAAAATTACCAAAGTACCCCCGATTTACA
1 AAATTACCAAAATACCTTCAATTTGT-AAAATTACCAAAATACCCCTGATTTGTA
64046138 AAATTACCA
1 AAATTACCA
64046147 TTTTACCCTC
Statistics
Matches: 227, Mismatches: 42, Indels: 19
0.79 0.15 0.07
Matches are distributed among these distances:
53 50 0.22
54 145 0.64
55 32 0.14
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCTTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:64046116 original size:81 final size:81
Alignment explanation
Indices: 64045814--64046099 Score: 344
Period size: 81 Copynumber: 3.5 Consensus size: 81
64045804 TTAGTTTACC
* * * * * *
64045814 AAATTACTAAAATGCCTTCAATTTGTAAAATTACCAAAATACCCCTGGTTTGTGAAATTACCAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAA
*
64045879 ATACCC-CTAATTTGTG
66 ATACCCTC-AATTTGTA
* * *
64045895 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTACTGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAA
* *
64045960 ATACCCTTAACTTGTA
66 ATACCCTCAATTTGTA
** * * **
64045976 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAA
*
64046041 ATACCCTCAGTTTG-A
66 ATACCCTCAATTTGTA
* *
64046056 AAATTAATGAAATACCAC-CGATTTGTAAAATTACTAAAATACCC
1 AAATTACTGAAATACC-CTCGATTTGTAAAATTACCAAAATACCC
64046100 TCAAATTGTA
Statistics
Matches: 171, Mismatches: 32, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
80 35 0.20
81 136 0.80
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAA
ATACCCTCAATTTGTA
Found at i:64046203 original size:27 final size:27
Alignment explanation
Indices: 64046172--64046357 Score: 257
Period size: 27 Copynumber: 6.9 Consensus size: 27
64046162 ACAAAATATT
*
64046172 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
64046199 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
64046226 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
64046253 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
64046280 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
64046307 AAATACCCCTATAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
64046334 AGATA-CCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
64046358 AATTTTGCCC
Statistics
Matches: 142, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
26 14 0.10
27 128 0.90
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:64046844 original size:22 final size:22
Alignment explanation
Indices: 64046784--64046848 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
64046774 TTAAAGCCTT
*
64046784 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
** *
64046806 CT-ACACATTGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
64046828 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
64046849 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:64047087 original size:27 final size:27
Alignment explanation
Indices: 64047030--64047108 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
64047020 ATTTTCTCTT
* * *
64047030 TCTGGTGGCTATACCACAAATATCT-GT
1 TCTGGTGGCTCTGCCA-AAATATCTGGA
*
64047057 TCTGGTGGCTCTGCCATAATATCTGGA
1 TCTGGTGGCTCTGCCAAAATATCTGGA
* * *
64047084 TCTGGTGACTCTGTCACAATATCTG
1 TCTGGTGGCTCTGCCAAAATATCTG
64047109 ATAACTGAGC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 7 0.16
27 37 0.84
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCAAAATATCTGGA
Found at i:64047283 original size:6 final size:6
Alignment explanation
Indices: 64047245--64047333 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
64047235 TTGCATTCAC
* *
64047245 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
64047295 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
64047334 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
5 4 0.06
6 49 0.74
7 11 0.17
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:64047294 original size:31 final size:31
Alignment explanation
Indices: 64047245--64047349 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
64047235 TTGCATTCAC
*
64047245 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* * *
64047277 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
64047308 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
64047338 TTTCTTATTCTG
1 ATTCTGATTCTG
64047350 TAATAGGTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
30 16 0.26
31 37 0.60
32 9 0.15
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:64048124 original size:2 final size:2
Alignment explanation
Indices: 64048117--64048152 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
64048107 GGTGATGTAC
64048117 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64048153 GTAAATGGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64051556 original size:17 final size:17
Alignment explanation
Indices: 64051530--64051563 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64051520 ATGCTTTATA
*
64051530 TTTCAAGTTTTCCATAT
1 TTTCAAGTTTTACATAT
*
64051547 TTTCATGTTTTACATAT
1 TTTCAAGTTTTACATAT
64051564 ACGTGCAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTCAAGTTTTACATAT
Found at i:64052675 original size:17 final size:17
Alignment explanation
Indices: 64052649--64052689 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
64052639 TAACTCTCTA
* *
64052649 TTTAATTTAAAGATAATT
1 TTTAATTAAAACAT-ATT
64052667 TTTAATTAAAACATATT
1 TTTAATTAAAACATATT
64052684 TTTAAT
1 TTTAAT
64052690 GTTTTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATTAAAACATATT
Found at i:64052962 original size:29 final size:30
Alignment explanation
Indices: 64052925--64052983 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
64052915 TATTAATTAA
*
64052925 AAAAATCAAA-GTTGGTGGAAAAATTCAAT
1 AAAAATCAAATGTTAGTGGAAAAATTCAAT
* * *
64052954 AAAATTCAAATTTTAGTGGCAAAATTCAAT
1 AAAAATCAAATGTTAGTGGAAAAATTCAAT
64052984 CTCATTAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (30 bp):
AAAAATCAAATGTTAGTGGAAAAATTCAAT
Found at i:64056666 original size:48 final size:46
Alignment explanation
Indices: 64056599--64056708 Score: 132
Period size: 48 Copynumber: 2.3 Consensus size: 46
64056589 CGTCTTCGAC
**
64056599 ATGGACTTACATGAATTATTCCTATCT-CCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTTATTCCTATCTCCCAA-GCC--ATATATATAAT
* * * *
64056647 ATGGGCTTACATGGCTTATTCCTGTCTCCCAAGCCATATATCTGAT
1 ATGGACTTACATGGCTTATTCCTATCTCCCAAGCCATATATATAAT
64056693 ATGGACTTACATGGCT
1 ATGGACTTACATGGCT
64056709 CATTTCTGTC
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 24 0.44
48 26 0.48
49 4 0.07
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTTATTCCTATCTCCCAAGCCATATATATAAT
Found at i:64056703 original size:46 final size:47
Alignment explanation
Indices: 64056599--64056718 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 47
64056589 CGTCTTCGAC
** *
64056599 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTTATTCCTGTCTCCAATGCCA-ATATATATAAT
* * *
64056647 ATGGGCTTACATGGCTTATTCCTGTCTCCCAA-GCC-ATATATCTGAT
1 ATGGACTTACATGGCTTATTCCTGTCT-CCAATGCCAATATATATAAT
* *
64056693 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTTATTCCTGTC
64056719 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 32 0.52
48 26 0.42
49 4 0.06
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTTATTCCTGTCTCCAATGCCAATATATATAAT
Found at i:64060684 original size:16 final size:16
Alignment explanation
Indices: 64060663--64060709 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
64060653 TCTATTCCAT
64060663 TCTATTCAATTACAAC
1 TCTATTCAATTACAAC
*
64060679 TCTATTCAATTACAGC
1 TCTATTCAATTACAAC
* *
64060695 CCTATTCCATTACAA
1 TCTATTCAATTACAA
64060710 TGAACCAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.34, C:0.28, G:0.02, T:0.36
Consensus pattern (16 bp):
TCTATTCAATTACAAC
Found at i:64061693 original size:48 final size:48
Alignment explanation
Indices: 64061620--64061742 Score: 156
Period size: 48 Copynumber: 2.6 Consensus size: 48
64061610 ATATGTGATC
*
64061620 CCATGTCTGGGACATGGCATTGGCATCGATCTACGATCCCATGTAAGA
1 CCATGTCTGGGACATGGCATTGGCATCGATATACGATCCCATGTAAGA
* * * **
64061668 CCATGTCTAGGACATGGCATCGGCATTGATATGTGATCCCATGTAAGA
1 CCATGTCTGGGACATGGCATTGGCATCGATATACGATCCCATGTAAGA
* * * *
64061716 GCATATCCGGGATATGGCATTGGCATC
1 CCATGTCTGGGACATGGCATTGGCATC
64061743 CTACCATGTG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (48 bp):
CCATGTCTGGGACATGGCATTGGCATCGATATACGATCCCATGTAAGA
Found at i:64073729 original size:43 final size:43
Alignment explanation
Indices: 64073682--64073786 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
64073672 TCCCATATAT
* * * *
64073682 GGTCTTACATGTTATCACATATCGATGCCT-CTGTCCCAGACAG
1 GGTCTTACACGTAATCACATACCGATG-CTAATGTCCCAGACAG
* *
64073725 GGTCTTACACGTAATCTCATACCGATGCTAATGTCCCAGACAT
1 GGTCTTACACGTAATCACATACCGATGCTAATGTCCCAGACAG
*
64073768 GGTCTTACACGAAATCACA
1 GGTCTTACACGTAATCACA
64073787 CCTCAGAACT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 2 0.04
43 51 0.96
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATACCGATGCTAATGTCCCAGACAG
Found at i:64074801 original size:21 final size:21
Alignment explanation
Indices: 64074763--64074802 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
64074753 AGAGCACCAA
*
64074763 GAGTCAAAAGGAGCCAAAAAT
1 GAGTCAAAAGGAGACAAAAAT
64074784 GAGTCGAAAAGG-GACAAAA
1 GAGTC-AAAAGGAGACAAAA
64074803 CAGACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.53, C:0.12, G:0.28, T:0.07
Consensus pattern (21 bp):
GAGTCAAAAGGAGACAAAAAT
Found at i:64075851 original size:13 final size:13
Alignment explanation
Indices: 64075833--64075861 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64075823 TTTAGTTTAA
64075833 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64075846 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64075859 TTA
1 TTA
64075862 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:64079673 original size:5 final size:6
Alignment explanation
Indices: 64079643--64079672 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
64079633 TATTTATCTC
64079643 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
64079673 CATTTCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TCTTTT
Found at i:64082399 original size:13 final size:13
Alignment explanation
Indices: 64082381--64082409 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64082371 TTCATTTTAA
64082381 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64082394 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64082407 TTA
1 TTA
64082410 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:64084808 original size:48 final size:48
Alignment explanation
Indices: 64084718--64084846 Score: 143
Period size: 48 Copynumber: 2.7 Consensus size: 48
64084708 TAACTGGGCT
* * * *
64084718 ATCGGAATCAATAT-CGATACCATGTAAGACTATCTCTGGGACATAGC
1 ATCGGCATCAATATACGATCCCATGTAAGACCATCTCTAGGACATAGC
* * * * * *
64084765 ATCGGTATCGATCTACGATCCCTTGTAAGACCATGTCTAGGACATGGC
1 ATCGGCATCAATATACGATCCCATGTAAGACCATCTCTAGGACATAGC
**
64084813 ATCGGCATCAATATGTGATCCCATGTAAGACCAT
1 ATCGGCATCAATATACGATCCCATGTAAGACCAT
64084847 ATCTGAGATA
Statistics
Matches: 66, Mismatches: 15, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
47 11 0.17
48 55 0.83
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26
Consensus pattern (48 bp):
ATCGGCATCAATATACGATCCCATGTAAGACCATCTCTAGGACATAGC
Found at i:64087427 original size:33 final size:32
Alignment explanation
Indices: 64087378--64087441 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
64087368 CTCGTTGTAA
* *
64087378 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
64087411 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
64087442 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:64094905 original size:41 final size:41
Alignment explanation
Indices: 64094860--64095048 Score: 102
Period size: 41 Copynumber: 5.1 Consensus size: 41
64094850 TGAAAGATAA
64094860 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64094901 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64094931 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64094972 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64095002 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64095043 ATGTAG
1 ATGTAG
64095049 ACAAGAGAGC
Statistics
Matches: 102, Mismatches: 20, Indels: 52
0.59 0.11 0.30
Matches are distributed among these distances:
29 2 0.02
30 16 0.16
31 18 0.18
32 2 0.02
33 6 0.06
34 2 0.02
35 2 0.02
36 2 0.02
37 2 0.02
38 6 0.06
39 2 0.02
40 18 0.18
41 22 0.22
42 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64094916 original size:71 final size:71
Alignment explanation
Indices: 64094828--64095062 Score: 470
Period size: 71 Copynumber: 3.3 Consensus size: 71
64094818 GAGATGTATC
64094828 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64094893 AGGACA
66 AGGACA
64094899 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64094964 AGGACA
66 AGGACA
64094970 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64095035 AGGACA
66 AGGACA
64095041 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64095063 AGACAAATCG
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 164 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64102077 original size:41 final size:41
Alignment explanation
Indices: 64102032--64102149 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64102022 TGAAAGATAA
64102032 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64102073 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64102103 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64102144 ATGTAG
1 ATGTAG
64102150 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64102088 original size:71 final size:71
Alignment explanation
Indices: 64102000--64102163 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64101990 GAGATGTATC
64102000 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64102065 AGGACA
66 AGGACA
64102071 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64102136 AGGACA
66 AGGACA
64102142 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64102164 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64105850 original size:2 final size:2
Alignment explanation
Indices: 64105843--64105868 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64105833 GCTCTTGCAC
64105843 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64105869 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64106669 original size:40 final size:40
Alignment explanation
Indices: 64106575--64106719 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
64106565 TACTCGAATG
* *
64106575 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
64106616 ACATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
64106656 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
64106696 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64106720 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.69
41 26 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:64109068 original size:17 final size:17
Alignment explanation
Indices: 64109043--64109077 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
64109033 TTCAATTTCA
64109043 TAATTTATTC-ACTATT
1 TAATTTATTCTACTATT
64109059 TAATTCTATTCTACTATT
1 TAATT-TATTCTACTATT
64109077 T
1 T
64109078 TTAGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (17 bp):
TAATTTATTCTACTATT
Found at i:64109903 original size:29 final size:29
Alignment explanation
Indices: 64109871--64110002 Score: 228
Period size: 29 Copynumber: 4.5 Consensus size: 29
64109861 ATAGTGAATC
64109871 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
64109900 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
64109930 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
64109959 TGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
64109988 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64110003 GTACAATTTT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 70 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:64110012 original size:59 final size:59
Alignment explanation
Indices: 64109871--64110002 Score: 230
Period size: 59 Copynumber: 2.3 Consensus size: 59
64109861 ATAGTGAATC
64109871 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* * *
64109930 CGCACACTTAGTGCTATATATTTTCAGTTTGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
64109988 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64110003 GTACAATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
58 24 0.34
59 46 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:64111366 original size:19 final size:18
Alignment explanation
Indices: 64111342--64111377 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
64111332 CCCCCTTTTT
*
64111342 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
64111361 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
64111378 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:64117635 original size:29 final size:29
Alignment explanation
Indices: 64117603--64117734 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
64117593 ATAGTGAATC
64117603 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
64117632 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
64117662 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
64117691 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
64117720 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64117735 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:64117744 original size:59 final size:59
Alignment explanation
Indices: 64117603--64117734 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
64117593 ATAGTGAATC
64117603 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
64117662 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
64117720 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64117735 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:64118219 original size:2 final size:2
Alignment explanation
Indices: 64118212--64118236 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64118202 CATACTTATG
64118212 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
64118237 GGGCATCACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64119107 original size:19 final size:18
Alignment explanation
Indices: 64119083--64119118 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
64119073 CCCCCTTTTT
*
64119083 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
64119102 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
64119119 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:64124159 original size:27 final size:27
Alignment explanation
Indices: 64124140--64124269 Score: 188
Period size: 27 Copynumber: 4.8 Consensus size: 27
64124130 ATTACCAAAG
64124140 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
64124167 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
64124194 TACCCTCGGTTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
64124221 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
64124248 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
64124270 TGAAATATCC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:64124187 original size:54 final size:54
Alignment explanation
Indices: 64124115--64124243 Score: 168
Period size: 54 Copynumber: 2.4 Consensus size: 54
64124105 TATTGAAGTG
* *
64124115 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTA
* *** * * *
64124169 CCCTCGATTTATAGAATTACCATTTTACCCTCGGTTTACAGAATTATCGTTTTA
1 CCCTCAATTTATAGAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTA
*
64124223 CCCTCAATTTACAGAATTACC
1 CCCTCAATTTATAGAATTACC
64124244 GTTTTACCCT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.36
Consensus pattern (54 bp):
CCCTCAATTTATAGAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTA
Found at i:64124302 original size:27 final size:27
Alignment explanation
Indices: 64124251--64124303 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
64124241 ACCGTTTTAC
**
64124251 CCTTGATTTACAAAATTACTGAAATAT
1 CCTTGATTTACAAAATTACCAAAATAT
*
64124278 CCTTGGTTTACAAAATTACCAAAATA
1 CCTTGATTTACAAAATTACCAAAATA
64124304 CCCTCAATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.34
Consensus pattern (27 bp):
CCTTGATTTACAAAATTACCAAAATAT
Found at i:64124306 original size:81 final size:81
Alignment explanation
Indices: 64124127--64124311 Score: 201
Period size: 81 Copynumber: 2.3 Consensus size: 81
64124117 CTCAATTTGT
* * * *
64124127 AAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCAT
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAT
**
64124192 TTTACCCTCGGTTTAC
66 AATACCCTCGGTTTAC
* * **** * * *
64124208 AGAATTATCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTACAAAATTACTGA
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-CA
* *
64124273 -AATATCCTTGGTTTAC
65 TAATACCCTCGGTTTAC
64124289 AAAATTACCAAAATACCCTCAAT
1 AAAATTACCAAAATACCCTCAAT
64124312 CAGTAAAATT
Statistics
Matches: 81, Mismatches: 22, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
81 80 0.99
82 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAT
AATACCCTCGGTTTAC
Found at i:64124319 original size:27 final size:27
Alignment explanation
Indices: 64124289--64124578 Score: 173
Period size: 27 Copynumber: 10.7 Consensus size: 27
64124279 CTTGGTTTAC
* **
64124289 AAAATTACCAAAATA-CCCTCAATCAGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
64124316 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
64124343 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
64124370 AAGATTACCAAAATACCCCT-GATTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* ** * *
64124397 GAAATTACTGAAATA-CCCTTGACTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * **
64124424 AAAATTATCAAAATA-CCCTTGTAGGGT
1 AAAATTACCAAAATACCCCTAGT-TTGT
* * **
64124451 AGAATTACCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTAGT-TTGT
* * * *
64124478 AGAATTATCGAAATACCCCT-GTATGGT
1 AAAATTACCAAAATACCCCTAGT-TTGT
* * **
64124505 AGAATTACCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTAGT-TTGT
* * **
64124532 AGAATTACCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTAGT-TTGT
* *
64124559 AGAATTACCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
64124579 GTAGGGTAGA
Statistics
Matches: 235, Mismatches: 23, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
26 5 0.02
27 222 0.94
28 8 0.03
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:64124458 original size:81 final size:81
Alignment explanation
Indices: 64124326--64124676 Score: 358
Period size: 81 Copynumber: 4.3 Consensus size: 81
64124316 AAAATTACCA
* * ** *
64124326 AAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCTAGT-TTGTA-AGATTACCAAAATACCC
1 AAATACCCCT-GTATGGTAAAATTACCAAAATA-CCCTTGTAGGGTAGA-ATTACCGAAATACCC
**
64124388 CTG-ATTTGT-GAAATTACTG
63 CTGTA-GGGTAG-AATTACTG
* * *
64124407 AAATACCCTTG-ACTTGTAAAATTATCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCT
1 AAATACCCCTGTA-TGGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCT
64124471 GTAGGGTAGAATTA-TCG
65 GTAGGGTAGAATTACT-G
* * *
64124488 AAATACCCCTGTATGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGTATGGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
*
64124553 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACTG
* * * * * *
64124569 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTGTAATACCCCTG
1 AAATACCCCTGTATGGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
*
64124634 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACTG
* * *
64124650 AGATACCCTTGT-GGGATAAAATTACCA
1 AAATACCCCTGTATGG-TAAAATTACCA
64124677 TTTTACCCTA
Statistics
Matches: 235, Mismatches: 25, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
80 11 0.05
81 220 0.94
82 4 0.02
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (81 bp):
AAATACCCCTGTATGGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTG
Found at i:64124579 original size:27 final size:27
Alignment explanation
Indices: 64124434--64124675 Score: 378
Period size: 27 Copynumber: 9.0 Consensus size: 27
64124424 AAAATTATCA
*
64124434 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
64124461 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
64124488 AAATACCCCTGTATGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
64124515 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
64124542 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
64124569 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
64124596 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
64124623 TAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
64124650 AGATACCCTTGT-GGGATAAAATTACC
1 AAATACCCCTGTAGGG-TAGAATTACC
64124676 ATTTTACCCT
Statistics
Matches: 198, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
26 3 0.02
27 195 0.98
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:64143971 original size:93 final size:93
Alignment explanation
Indices: 64143864--64144034 Score: 324
Period size: 93 Copynumber: 1.8 Consensus size: 93
64143854 GCCCCTAAGT
*
64143864 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64143929 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64143957 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64144022 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64144035 TCAACCATCT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64144031 original size:46 final size:46
Alignment explanation
Indices: 64143859--64144031 Score: 228
Period size: 46 Copynumber: 3.7 Consensus size: 46
64143849 AACCCGCCCC
* *
64143859 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
64143905 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
64143953 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
64143998 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64144032 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:64144485 original size:29 final size:29
Alignment explanation
Indices: 64144453--64144508 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
64144443 ATTTAATACG
64144453 AACTTTGGAAAAATTACACTTTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
* * *
64144482 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
64144509 ATAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCTA
Found at i:64148195 original size:37 final size:35
Alignment explanation
Indices: 64148145--64148214 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 35
64148135 AGTTGTGTTG
* *
64148145 TTTTTCTGACCATCCTTCCTCCTCCTCCTTTTTTTAC
1 TTTTTCTCACCAT-CTACCTCCTCCT-CTTTTTTTAC
* *
64148182 TTTTTCTCTCCATCTACCTTCTCCTCTTTTTTT
1 TTTTTCTCACCATCTACCTCCTCCTCTTTTTTT
64148215 CTCCATAGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 8 0.28
36 10 0.34
37 11 0.38
ACGTcount: A:0.07, C:0.36, G:0.01, T:0.56
Consensus pattern (35 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTTTTTTAC
Found at i:64149015 original size:16 final size:15
Alignment explanation
Indices: 64148989--64149019 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
64148979 ACTAGATCAG
64148989 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
64149004 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
64149020 TGATATTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:64149476 original size:27 final size:26
Alignment explanation
Indices: 64149436--64149547 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
64149426 AGGAAGCGTC
*
64149436 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGAT
* *
64149463 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCAAAT-TATCTGAT
*
64149490 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCA-AATTATCTG-AT
* ** * *
64149518 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCAAATTATCTGAT
64149544 CTGG
1 CTGG
64149548 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.69
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGAT
Found at i:64149540 original size:54 final size:54
Alignment explanation
Indices: 64149436--64149547 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
64149426 AGGAAGCGTC
* * *
64149436 CTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * *
64149490 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTT
64149544 CTGG
1 CTGG
64149548 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:64152052 original size:47 final size:48
Alignment explanation
Indices: 64151979--64152203 Score: 231
Period size: 47 Copynumber: 4.8 Consensus size: 48
64151969 TAAGGTGCTA
* *
64151979 ATGCCATGTCCCAAACATGGTTTTACACTGGCTCACATCTCAAGT-CG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAAGTGCG
*
64152026 ATGCCATGTCCCAAACATGGTCTTACACTAACT-ATCATCTC--GTAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCA-CATCTCAAGT-G-CG
* *
64152074 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAA-TGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAAGTGC-G
* * *
64152120 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--T-AAGGTGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAA-GT-G-CG
64152168 ATG-CATGTCCCAAACAT-GTCTTACACTAGCTCACAT
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT
64152204 ACAAATGACC
Statistics
Matches: 153, Mismatches: 10, Indels: 30
0.79 0.05 0.16
Matches are distributed among these distances:
45 5 0.03
46 42 0.27
47 78 0.51
48 27 0.18
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAAGTGCG
Found at i:64152144 original size:94 final size:93
Alignment explanation
Indices: 64151983--64152203 Score: 300
Period size: 94 Copynumber: 2.4 Consensus size: 93
64151973 GTGCTAATGC
* *
64151983 CATGTCCCAAACATGGTTTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAAACATGGTC
1 CATGTCCCAAACAT-GTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAAACATGGTC
**
64152048 TTACACTAACTATCATCTCGTAGCCGATG
65 TTACACTAACTATCATAACGTAGCCGATG
* * *
64152077 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAA-TGCTGATGCCATGTCCCAGACATGGT
1 CATGTCCCAAACATGTCTTACACTAGCTCACATCTCAAGT-C-GATGCCATGTCCCAAACATGGT
** * * *
64152141 CTTACACTGGCTCTCATAAGGTGGCCGATG
64 CTTACACTAACTATCATAACGTAGCCGATG
64152171 CATGTCCCAAACATGTCTTACACTAGCTCACAT
1 CATGTCCCAAACATGTCTTACACTAGCTCACAT
64152204 ACAAATGACC
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 22 0.20
94 88 0.79
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (93 bp):
CATGTCCCAAACATGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAAACATGGTCT
TACACTAACTATCATAACGTAGCCGATG
Found at i:64155539 original size:16 final size:15
Alignment explanation
Indices: 64155506--64155552 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
64155496 AGATGATAAT
64155506 TATTAATATATAATTA
1 TATTAAT-TATAATTA
*
64155522 TATTCATTATAATATA
1 TATTAATTATAAT-TA
*
64155538 TATTAATTATTATTA
1 TATTAATTATAATTA
64155553 ACTTTATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:64155552 original size:22 final size:23
Alignment explanation
Indices: 64155504--64155553 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
64155494 AAAGATGATA
64155504 ATTATTAATATATAATTATATTC
1 ATTATTAATATATAATTATATTC
64155527 ATTA-TAATATAT-ATTA-ATT-
1 ATTATTAATATATAATTATATTC
64155546 ATTATTAA
1 ATTATTAA
64155554 CTTTATATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.15
20 6 0.23
21 4 0.15
22 8 0.31
23 4 0.15
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTATTAATATATAATTATATTC
Found at i:64165502 original size:25 final size:25
Alignment explanation
Indices: 64165473--64165652 Score: 252
Period size: 25 Copynumber: 7.2 Consensus size: 25
64165463 CAAGCTTGTT
*
64165473 AATTTGTTCTTCATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
64165498 AATTTGCTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
64165523 AACTTGTTCTTAATAATTTCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
64165548 AATTTGCTCTTAATAATTCTGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
64165573 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* * *
64165598 CATTTATTCTTAATAATTCCGATTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
64165623 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
64165648 GATTT
1 AATTT
64165653 TCCCTTATTA
Statistics
Matches: 135, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 135 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.48
Consensus pattern (25 bp):
AATTTGTTCTTAATAATTCCGGTTA
Found at i:64166553 original size:45 final size:45
Alignment explanation
Indices: 64166489--64166843 Score: 531
Period size: 45 Copynumber: 8.0 Consensus size: 45
64166479 ATATCGTACA
*
64166489 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAT
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
** *
64166534 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTAGTGAT
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
64166579 ATACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
64166624 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
64166669 ATACTATTCAGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
64166714 ATACTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * *
64166759 ATACTATTC-GGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAA
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
64166803 ATGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 AT-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
64166844 ATGAATTCGG
Statistics
Matches: 288, Mismatches: 20, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
42 10 0.03
43 20 0.07
44 37 0.13
45 221 0.77
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:64167797 original size:55 final size:55
Alignment explanation
Indices: 64167726--64167841 Score: 133
Period size: 55 Copynumber: 2.1 Consensus size: 55
64167716 TAACAGGTTT
* * * * * *
64167726 GACCACGGGTGTTCCACATGGGCGTGTCACATGCCCGTACTGTTTTGGTAGGCTC
1 GACCACGGGTCTTCCACACGGGCGTATCACACGCCCATACTGTTTTGGCAGGCTC
* * * **
64167781 GTCCACGGTTCTTCCACACGGGCGTATCTCACGCCCATGTTGTTTTGGCAGGCTC
1 GACCACGGGTCTTCCACACGGGCGTATCACACGCCCATACTGTTTTGGCAGGCTC
64167836 GACCAC
1 GACCAC
64167842 AGTCATATCG
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.15, C:0.31, G:0.28, T:0.27
Consensus pattern (55 bp):
GACCACGGGTCTTCCACACGGGCGTATCACACGCCCATACTGTTTTGGCAGGCTC
Found at i:64182012 original size:40 final size:40
Alignment explanation
Indices: 64181966--64182112 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
64181956 TGAGGAATTG
64181966 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATGT
* * * *
64182006 TTTCCGGGCTTAAAGACCCACAGGCTATATACTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATGT
* *
64182046 TATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATGT
*
64182086 TATCCGGGC-TAGAGACCCGCAGGCTAT
1 TATCCGGGCTTAAAGACCCGCAGGCTAT
64182113 GAGCTGGTAT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 16 0.17
40 78 0.83
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATGT
Found at i:64191152 original size:55 final size:53
Alignment explanation
Indices: 64191044--64191240 Score: 195
Period size: 55 Copynumber: 3.7 Consensus size: 53
64191034 ATTAGGGTTT
* *
64191044 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAAATTG-TAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG--CATTGATAA-G-TTCATAAGGC
* * ** *
64191099 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACCATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT--CATAAGG-C
* * * *
64191155 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
*
64191207 AAGGATACCATGTAAGACCATG-CGAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
64191241 ATGGCAAGTT
Statistics
Matches: 117, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
52 16 0.14
53 28 0.24
54 4 0.03
55 65 0.56
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:64191392 original size:23 final size:24
Alignment explanation
Indices: 64191366--64191410 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
64191356 AAGGTAAGGT
*
64191366 AAGGTAAGACGAG-TTATGCTAAA
1 AAGGTAAGACAAGTTTATGCTAAA
64191389 AAGGTAAGACAAGTTTATGCTA
1 AAGGTAAGACAAGTTTATGCTA
64191411 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTTATGCTAAA
Found at i:64191510 original size:16 final size:16
Alignment explanation
Indices: 64191489--64191520 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64191479 ATAAATTGGA
64191489 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
64191505 TTAAGTAAGTGAGTAT
1 TTAAGTAAGTAAGTAT
64191521 GTGAAGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:64195407 original size:14 final size:15
Alignment explanation
Indices: 64195390--64195430 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
64195380 TCACGAAAAT
64195390 TTCACA-AAAATAAA
1 TTCACACAAAATAAA
64195404 TTCACACAAAATAAA
1 TTCACACAAAATAAA
*
64195419 --CACAGAAAATAA
1 TTCACACAAAATAA
64195431 TTTTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 11 0.44
14 6 0.24
15 8 0.32
ACGTcount: A:0.63, C:0.17, G:0.02, T:0.17
Consensus pattern (15 bp):
TTCACACAAAATAAA
Found at i:64210942 original size:41 final size:41
Alignment explanation
Indices: 64210897--64211014 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64210887 TGAAAGATAA
64210897 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64210938 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64210968 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64211009 ATGTAG
1 ATGTAG
64211015 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64210953 original size:71 final size:71
Alignment explanation
Indices: 64210865--64211028 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64210855 GAGATGTATC
64210865 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64210930 AGGACA
66 AGGACA
64210936 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64211001 AGGACA
66 AGGACA
64211007 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64211029 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Done.