Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 215 of 770
Found at i:64220557 original size:39 final size:40
Alignment explanation
Indices: 64220437--64220654 Score: 212
Period size: 40 Copynumber: 5.5 Consensus size: 40
64220427 GAATCACGTA
* * ** * *
64220437 CCTTC-GGATTTAA-CCGGATATAGCGACTCGCTCAAAAG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* * * *
64220475 CCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
*
64220515 CCTTCGGGACTTAACCCGGATTT-GGAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
**
64220554 CCTTC-GGACTTAGTCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* * * * *
64220593 CCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAG
1 CCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATG
*
64220634 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAACCCGGAT
64220655 ACCATTCGAA
Statistics
Matches: 145, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
38 20 0.14
39 44 0.30
40 52 0.36
41 29 0.20
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:64220593 original size:78 final size:81
Alignment explanation
Indices: 64220437--64220654 Score: 252
Period size: 78 Copynumber: 2.8 Consensus size: 81
64220427 GAATCACGTA
* * * *
64220437 CCTTC-GGATTTAA-CCGGATATAGCG-ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTAT
1 CCTTCGGGAATTAACCCGGATTTAG-GAACTCGCACAAAAGCCTTCGGGACTTAGCCCGGATTAT
*
64220498 AATAGCTCGCACAAATG
65 AATAACTCGCACAAATG
* * *
64220515 CCTTCGGGACTTAACCCGGATTT-GGAACTCGCACAAATGCCTTC-GGACTTAGTCCGGATT-TA
1 CCTTCGGGAATTAACCCGGATTTAGGAACTCGCACAAAAGCCTTCGGGACTTAGCCCGGATTATA
*
64220577 GTAACTCGCACAAATG
66 ATAACTCGCACAAATG
* ** *
64220593 CCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGAATTAACCCGGATTTAGGAAC-TCGCACAAAAGCCTTCGGGACTTAGCCCGGAT
64220655 ACCATTCGAA
Statistics
Matches: 118, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 54 0.46
79 29 0.25
80 21 0.18
81 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CCTTCGGGAATTAACCCGGATTTAGGAACTCGCACAAAAGCCTTCGGGACTTAGCCCGGATTATA
ATAACTCGCACAAATG
Found at i:64231348 original size:40 final size:40
Alignment explanation
Indices: 64231292--64231486 Score: 121
Period size: 40 Copynumber: 4.8 Consensus size: 40
64231282 GGATATAGCG
* * * *
64231292 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAAGA
* * **
64231332 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
* * ***
64231372 ACTCGCACAAATGCCTTC-AGATCTTAGTTCGGATTT-AGTA
1 ACTCGCACAAATGCCTTCGGGA-CATAACCCGGATTTAAG-A
* * *
64231412 ACTCGCACAAATACCTTCGGGA-ATTGACCCGGATTT-AGTC
1 ACTCGCACAAATGCCTTCGGGACA-TAACCCGGATTTAAG-A
* * * *
64231452 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 AC-TCGCACAAATGCCTTCGGGACATAACCCGGAT
64231487 ACCATTCGAA
Statistics
Matches: 120, Mismatches: 28, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
39 3 0.03
40 88 0.73
41 29 0.24
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
Found at i:64233993 original size:40 final size:40
Alignment explanation
Indices: 64233860--64234045 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
64233850 GCTACTCGTT
** * *
64233860 CAAATGCCTTCGGGAAATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCACA
* *
64233900 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
*
64233940 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCACA
* * * *
64233980 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CA
64234021 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64234046 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 11 0.08
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACA
Found at i:64236105 original size:40 final size:40
Alignment explanation
Indices: 64236048--64236250 Score: 279
Period size: 40 Copynumber: 5.1 Consensus size: 40
64236038 CGGATGATAA
* * *
64236048 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
64236088 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
64236128 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64236168 CAGGGCTAAGTCCCGAAGGCA-TTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
* **
64236207 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
64236247 CCGG
1 CCGG
64236251 TTAAAGCCCG
Statistics
Matches: 149, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 37 0.25
40 111 0.74
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64242325 original size:46 final size:46
Alignment explanation
Indices: 64242275--64242396 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
64242265 TGAGTATCCA
* * *
64242275 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
64242321 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
* *
64242367 AGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
64242397 GGGGTGGGTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
Found at i:64257360 original size:49 final size:49
Alignment explanation
Indices: 64257292--64257414 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
64257282 TACATATATG
*
64257292 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
64257341 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
64257390 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
64257415 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:64259661 original size:29 final size:29
Alignment explanation
Indices: 64259570--64260022 Score: 768
Period size: 29 Copynumber: 15.7 Consensus size: 29
64259560 CGAATGATTA
* * *
64259570 GAGGCACTGTGTGTGC-AAATTCCGTTAACC
1 GAGGCACTGTGTGTGCGAGA-TCAG-TAATC
*
64259600 GA-GCACTATGTGTGCGAGA-CAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
64259627 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259656 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259685 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259714 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259743 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259772 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259801 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259830 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259859 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259888 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64259917 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* * *
64259946 GAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* *
64259975 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
64260004 GAGGCACTGTGTGTACGAG
1 GAGGCACTGTGTGTGCGAG
64260023 TTTTTCAACA
Statistics
Matches: 409, Mismatches: 11, Indels: 7
0.96 0.03 0.02
Matches are distributed among these distances:
27 6 0.01
28 19 0.05
29 380 0.93
30 4 0.01
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTGTGTGTGCGAGATCAGTAATC
Found at i:64260604 original size:40 final size:41
Alignment explanation
Indices: 64260506--64260604 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
64260496 TTCGAATGGT
* ** * *
64260506 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
64260547 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGC-AAATCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCTAAATCACTA-A
64260588 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
64260605 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 20 0.40
41 27 0.54
42 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
Found at i:64263774 original size:49 final size:49
Alignment explanation
Indices: 64263706--64263828 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
64263696 TACATATATG
*
64263706 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
64263755 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
64263804 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
64263829 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:64263974 original size:37 final size:37
Alignment explanation
Indices: 64263931--64264008 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
64263921 GTTCCGGGCG
64263931 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
64263968 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
64264005 AGAC
1 AGAC
64264009 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:64266086 original size:29 final size:29
Alignment explanation
Indices: 64266022--64266359 Score: 554
Period size: 29 Copynumber: 11.7 Consensus size: 29
64266012 CGAATGATTA
* * *
64266022 GAGGCACTGTGTGTGC-AAATTCCGTTAACC
1 GAGGCACTGTGTGTGCGAGA-TCAG-TAATC
*
64266052 GA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64266080 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64266109 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64266138 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64266167 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64266196 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64266225 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
64266254 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* * *
64266283 GAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* *
64266312 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
64266341 GAGGCACTGTGTGTACGAG
1 GAGGCACTGTGTGTGCGAG
64266360 TTTTTCAACA
Statistics
Matches: 295, Mismatches: 11, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
28 6 0.02
29 285 0.97
30 4 0.01
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTGTGTGTGCGAGATCAGTAATC
Found at i:64266941 original size:40 final size:41
Alignment explanation
Indices: 64266843--64266941 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
64266833 TTCGAATGGT
* ** * *
64266843 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
64266884 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGC-AAATCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCTAAATCACTA-A
64266925 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
64266942 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 20 0.40
41 27 0.54
42 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
Found at i:64270112 original size:49 final size:49
Alignment explanation
Indices: 64270044--64270166 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
64270034 TACATATATG
*
64270044 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
64270093 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
64270142 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
64270167 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:64270312 original size:37 final size:37
Alignment explanation
Indices: 64270269--64270346 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
64270259 GTTCCGGGCG
64270269 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
64270306 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
64270343 AGAC
1 AGAC
64270347 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:64279040 original size:40 final size:40
Alignment explanation
Indices: 64278901--64279084 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
64278891 TCGAATGATG
* *
64278901 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
64278941 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTA-AAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
64278980 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
64279019 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
64279060 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64279085 AGCGAGTCGT
Statistics
Matches: 117, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 20 0.17
39 23 0.20
40 65 0.56
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:64279040 original size:78 final size:79
Alignment explanation
Indices: 64278901--64279051 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 79
64278891 TCGAATGATG
* * *
64278901 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
64278966 GTGCGAGTTAAAAA
66 GTGCGAGTTAAAAA
* **
64278980 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
64279042 TCGTGCGAGT
64 TCGTGCGAGT
64279052 CACTATAACC
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.02
78 45 0.70
79 18 0.28
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAAAAA
Found at i:64284010 original size:40 final size:39
Alignment explanation
Indices: 64283915--64284042 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
64283905 TGCTGGAAAT
* * * *
64283915 TATATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
* *
64283954 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
64283994 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
64284034 TATATCCGG
1 TATATCCGG
64284043 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 27 0.35
40 48 0.62
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:64293531 original size:24 final size:24
Alignment explanation
Indices: 64293191--64293529 Score: 615
Period size: 24 Copynumber: 14.1 Consensus size: 24
64293181 GCAAAGACCA
64293191 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64293215 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
64293239 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64293263 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
64293287 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
64293311 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
64293335 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64293359 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
64293383 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
64293407 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
64293431 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
64293455 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64293479 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
64293503 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
64293527 TAT
1 TAT
64293530 AGTCACATTC
Statistics
Matches: 307, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 307 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:64301563 original size:24 final size:24
Alignment explanation
Indices: 64301295--64301561 Score: 471
Period size: 24 Copynumber: 11.1 Consensus size: 24
64301285 GCAAAGACCA
64301295 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64301319 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
64301343 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64301367 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
64301391 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64301415 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
64301439 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
64301463 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
64301487 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
64301511 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
64301535 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
64301559 TAT
1 TAT
64301562 AGTCACATTC
Statistics
Matches: 235, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 235 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:64311588 original size:21 final size:21
Alignment explanation
Indices: 64311562--64311601 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
64311552 TTCATATTCT
*
64311562 AATTTCATAAACTAATTTATG
1 AATTTCATAAAATAATTTATG
64311583 AATTTCATAAAATAATTTA
1 AATTTCATAAAATAATTTA
64311602 CTAAATCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (21 bp):
AATTTCATAAAATAATTTATG
Found at i:64311998 original size:50 final size:50
Alignment explanation
Indices: 64311902--64312007 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 50
64311892 ATTGGAACAC
* * * * *
64311902 CACATAAATACTTACCTATATGACCGGATATACCAAATTCATTATATCAT
1 CACATAAATACATACCTATAAGACCGAATATACCAAACTCAATATATCAT
* * *
64311952 TACATAAGTACATACCTATAAGACCGAATATA-CAAGGCTCAATATATCAT
1 CACATAAATACATACCTATAAGACCGAATATACCAA-ACTCAATATATCAT
64312002 CACATA
1 CACATA
64312008 TGGCTAGTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
49 3 0.07
50 43 0.93
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (50 bp):
CACATAAATACATACCTATAAGACCGAATATACCAAACTCAATATATCAT
Found at i:64315251 original size:40 final size:40
Alignment explanation
Indices: 64315178--64315385 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
64315168 CAATTGAATG
* * ** *
64315178 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
64315218 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
64315258 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
64315298 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
64315338 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
64315378 ATATCCGG
1 ATATCCGG
64315386 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:64315316 original size:80 final size:80
Alignment explanation
Indices: 64315180--64315385 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
64315170 ATTGAATGAT
* * ** * * * *
64315180 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
64315244 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
64315260 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
64315325 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
64315340 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
64315386 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:64323298 original size:40 final size:40
Alignment explanation
Indices: 64323225--64323432 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
64323215 CAATTGAATG
* * ** *
64323225 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
64323265 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
64323305 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
64323345 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
64323385 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
64323425 ATATCCGG
1 ATATCCGG
64323433 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:64323363 original size:80 final size:80
Alignment explanation
Indices: 64323227--64323432 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
64323217 ATTGAATGAT
* * ** * * * *
64323227 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
64323291 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
64323307 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
64323372 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
64323387 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
64323433 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:64324898 original size:18 final size:18
Alignment explanation
Indices: 64324861--64324899 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
64324851 TTGGAAATCA
*
64324861 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
64324879 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
64324897 AAA
1 AAA
64324900 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:64327902 original size:18 final size:18
Alignment explanation
Indices: 64327839--64327919 Score: 92
Period size: 18 Copynumber: 4.6 Consensus size: 18
64327829 TTGCAATAAT
* *
64327839 AGTAAATAGTGTAGTAAC
1 AGTAAACAGTGCAGTAAC
*
64327857 AAT-AACAGTGCAGTAAC
1 AGTAAACAGTGCAGTAAC
* * *
64327874 AGTTAATAGTGCCGTAAC
1 AGTAAACAGTGCAGTAAC
*
64327892 AGTAAACAGTGCAATAAC
1 AGTAAACAGTGCAGTAAC
64327910 AGTAAACAGT
1 AGTAAACAGT
64327920 ATGCAAGTCC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
17 14 0.27
18 38 0.73
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (18 bp):
AGTAAACAGTGCAGTAAC
Found at i:64328238 original size:27 final size:27
Alignment explanation
Indices: 64328220--64328323 Score: 172
Period size: 27 Copynumber: 3.9 Consensus size: 27
64328210 ATCTTACCAT
64328220 ATAAGGGCAAAACAATCATTTTACCTC
1 ATAAGGGCAAAACAATCATTTTACCTC
* * *
64328247 ATAAAGGCAAAACAGTCATTTTACCCC
1 ATAAGGGCAAAACAATCATTTTACCTC
*
64328274 ATAAGGGCAAAACAGTCATTTTACCTC
1 ATAAGGGCAAAACAATCATTTTACCTC
64328301 ATAAGGGCAAAACAATCATTTTA
1 ATAAGGGCAAAACAATCATTTTA
64328324 TCAATTAAGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.25
Consensus pattern (27 bp):
ATAAGGGCAAAACAATCATTTTACCTC
Found at i:64328271 original size:54 final size:54
Alignment explanation
Indices: 64328201--64328323 Score: 183
Period size: 54 Copynumber: 2.3 Consensus size: 54
64328191 ACATAGGGGT
* * *
64328201 AAAATAGTCATCTTACCATATAAGGGCAAAACAATCATTTTACCTCATAAAGGC
1 AAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAAGGC
* * *
64328255 AAAACAGTCATTTTACCCCATAAGGGCAAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAAGGC
*
64328309 AAAACAATCATTTTA
1 AAAACAGTCATTTTA
64328324 TCAATTAAGG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.26
Consensus pattern (54 bp):
AAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAAGGC
Found at i:64328596 original size:10 final size:10
Alignment explanation
Indices: 64328581--64328605 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
64328571 CGGTCTAGTT
64328581 TGGCCCAAAA
1 TGGCCCAAAA
64328591 TGGCCCAAAA
1 TGGCCCAAAA
64328601 TGGCC
1 TGGCC
64328606 TGAGCCCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (10 bp):
TGGCCCAAAA
Found at i:64331053 original size:19 final size:19
Alignment explanation
Indices: 64331028--64331126 Score: 74
Period size: 19 Copynumber: 5.1 Consensus size: 19
64331018 TCGCACTTAC
64331028 GTGCCCCTGTTGTACTTCG
1 GTGCCCCTGTTGTACTTCG
* * *
64331047 GTTCCCCTGATCGCACTTAC-
1 GTGCCCCTG-TTGTACTT-CG
* *
64331067 ATGCCCCTGTTGTACTTCA
1 GTGCCCCTGTTGTACTTCG
* * * **
64331086 GTACCCCTAATTGCACTTAT
1 GTGCCCCT-GTTGTACTTCG
64331106 GTGCCCCTGTTGTACTTCG
1 GTGCCCCTGTTGTACTTCG
64331125 GT
1 GT
64331127 ACTCTTGATG
Statistics
Matches: 58, Mismatches: 18, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
18 1 0.02
19 29 0.50
20 27 0.47
21 1 0.02
ACGTcount: A:0.13, C:0.32, G:0.19, T:0.35
Consensus pattern (19 bp):
GTGCCCCTGTTGTACTTCG
Found at i:64331066 original size:39 final size:39
Alignment explanation
Indices: 64331012--64331128 Score: 180
Period size: 39 Copynumber: 3.0 Consensus size: 39
64331002 ATAATTATAT
*
64331012 CCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTTC
1 CCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTAC
* *
64331051 CCCTGATCGCACTTACATGCCCCTGTTGTACTTCAGTAC
1 CCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTAC
* * *
64331090 CCCTAATTGCACTTATGTGCCCCTGTTGTACTTCGGTAC
1 CCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTAC
64331129 TCTTGATGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.15, C:0.34, G:0.18, T:0.33
Consensus pattern (39 bp):
CCCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTAC
Found at i:64331073 original size:20 final size:20
Alignment explanation
Indices: 64331012--64331114 Score: 70
Period size: 20 Copynumber: 5.2 Consensus size: 20
64331002 ATAATTATAT
64331012 CCCTGATCGCACTTACGTGC
1 CCCTGATCGCACTTACGTGC
* * *
64331032 CCCTG-TTGTACTT-CGGTTC
1 CCCTGATCGCACTTAC-GTGC
*
64331051 CCCTGATCGCACTTACATGC
1 CCCTGATCGCACTTACGTGC
* * *
64331071 CCCTG-TTGTACTT-CAGTAC
1 CCCTGATCGCACTTAC-GTGC
* * *
64331090 CCCTAATTGCACTTATGTGC
1 CCCTGATCGCACTTACGTGC
64331110 CCCTG
1 CCCTG
64331115 TTGTACTTCG
Statistics
Matches: 61, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
18 2 0.03
19 26 0.43
20 32 0.52
21 1 0.02
ACGTcount: A:0.15, C:0.36, G:0.17, T:0.32
Consensus pattern (20 bp):
CCCTGATCGCACTTACGTGC
Found at i:64337961 original size:43 final size:42
Alignment explanation
Indices: 64337883--64337988 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
64337873 TATGATTTAT
* *
64337883 GTGTAAGACCATGTCTAGGACATCAACATCTTATTTGATTTC
1 GTGTAAGACCATGTCTAGGACATCAACATCATATTTGATTAC
* **
64337925 GTGTAAGACCCTGTCTAGGACAGT-GGCATCAATATTTGATTAC
1 GTGTAAGACCATGTCTAGGACA-TCAACATC-ATATTTGATTAC
* * *
64337968 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTCTAGGAC
64337989 GTTGGCATTG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 25 0.47
43 28 0.53
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTAGGACATCAACATCATATTTGATTAC
Found at i:64337996 original size:43 final size:43
Alignment explanation
Indices: 64337884--64337977 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
64337874 ATGATTTATG
* ** * * *
64337884 TGTAAGACCATGTCTAGGACA-TCAACATC-TTATTTGATTTCG
1 TGTAAGACCCTGTCTAGGACAGT-GGCATCAATATTTGATTACA
64337926 TGTAAGACCCTGTCTAGGACAGTGGCATCAATATTTGATTACA
1 TGTAAGACCCTGTCTAGGACAGTGGCATCAATATTTGATTACA
64337969 TGTAAGACC
1 TGTAAGACC
64337978 ACGTCTGGGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 24 0.55
43 20 0.45
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (43 bp):
TGTAAGACCCTGTCTAGGACAGTGGCATCAATATTTGATTACA
Found at i:64339863 original size:29 final size:29
Alignment explanation
Indices: 64339778--64340021 Score: 132
Period size: 29 Copynumber: 8.6 Consensus size: 29
64339768 TCCTTTTAAC
** * *
64339778 AGAGATAGATACAAAGATATTCATT-TAAC
1 AGAGATAGCCACAAAGACATTC-TTATAAT
* * * *
64339807 AGAGATAGCAACAAAGGCATCCTCATAAT
1 AGAGATAGCCACAAAGACATTCTTATAAT
* *
64339836 AGAGATCGCCACAAAGACCTTCTTATAAT
1 AGAGATAGCCACAAAGACATTCTTATAAT
* * *
64339865 -GTAGATCGCTACAAA-AGC-TTCCTTATAAC
1 AG-AGATAGCCACAAAGA-CATT-CTTATAAT
* * * *
64339894 AAAGATTGCCACAAAGGCATTCTTTTAACT
1 AGAGATAGCCACAAAGACATTCTTATAA-T
** * *
64339924 A-AGATAGAAACATAGACATTCTTTTAAT
1 AGAGATAGCCACAAAGACATTCTTATAAT
*
64339952 AGAGATAGCCACATAG--ATTCCTTATAAT
1 AGAGATAGCCACAAAGACATT-CTTATAAT
* *
64339980 AGAGATTGCCACAAAGGC-TTCCTT-T--T
1 AGAGATAGCCACAAAGACATT-CTTATAAT
64340006 AGAGATAGCCACAAAG
1 AGAGATAGCCACAAAG
64340022 GCGTTATTCA
Statistics
Matches: 171, Mismatches: 32, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
26 16 0.09
27 3 0.02
28 29 0.17
29 120 0.70
30 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (29 bp):
AGAGATAGCCACAAAGACATTCTTATAAT
Found at i:64341565 original size:40 final size:40
Alignment explanation
Indices: 64341484--64341704 Score: 261
Period size: 40 Copynumber: 5.5 Consensus size: 40
64341474 ACCCACGTAT
* *
64341484 CTTCGGGAT-TTAG-CCGGATATA-ACAACTTGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
64341523 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAACGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
64341563 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCAAAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
64341603 CTTCGGGTCTTAACCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* ** *
64341643 CTTCGGATCTTAGTTCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
64341683 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
64341705 CATTCGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 139 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:64346831 original size:24 final size:24
Alignment explanation
Indices: 64346804--64346849 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
64346794 TATGAAGTGT
*
64346804 ATCATGGAGAGATATTA-GGAGAAA
1 ATCAAGGAGAGAT-TTATGGAGAAA
*
64346828 ATCAAGGAGTGATTTATGGAGA
1 ATCAAGGAGAGATTTATGGAGA
64346850 GATTTAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.41, C:0.04, G:0.30, T:0.24
Consensus pattern (24 bp):
ATCAAGGAGAGATTTATGGAGAAA
Found at i:64348224 original size:27 final size:27
Alignment explanation
Indices: 64348194--64348318 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
64348184 AACTGTTTAG
*
64348194 ATTACCGAAATACCCTTGGTTTGTAAA
1 ATTACCGAAATACCCTTAGTTTGTAAA
* * *
64348221 ATTATCAAAATACCCTCAGTTTGTAAA
1 ATTACCGAAATACCCTTAGTTTGTAAA
** * * *
64348248 ATTATGGAAACACCCCTAATTTGTAAA
1 ATTACCGAAATACCCTTAGTTTGTAAA
*
64348275 ATTACAGAAATACCCCTATAG--TGTAAA
1 ATTACCGAAATA-CCCT-TAGTTTGTAAA
64348302 ATTACCGAAATACCCTT
1 ATTACCGAAATACCCTT
64348319 GTAGGATAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.01
26 4 0.05
27 70 0.88
28 3 0.04
29 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
ATTACCGAAATACCCTTAGTTTGTAAA
Found at i:64352090 original size:39 final size:39
Alignment explanation
Indices: 64352036--64352111 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
64352026 TATGGCACAT
64352036 GCAACATAGTAATGAGTAGATCCAATATCCACCAAAGCA
1 GCAACATAGTAATGAGTAGATCCAATATCCACCAAAGCA
64352075 GCAACATAGTAATGAGTAGATCCAATATCCACCAAAG
1 GCAACATAGTAATGAGTAGATCCAATATCCACCAAAG
64352112 TAGTATACGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.18
Consensus pattern (39 bp):
GCAACATAGTAATGAGTAGATCCAATATCCACCAAAGCA
Found at i:64354699 original size:27 final size:27
Alignment explanation
Indices: 64354644--64354758 Score: 162
Period size: 27 Copynumber: 4.3 Consensus size: 27
64354634 CAGCATTGCT
* *
64354644 ACCAGAACAGATAA-TGTGACAGAGTC
1 ACCAGAACAGATAATTGTGGCAGAGCC
64354670 ACCAGAACAGATAATTGTGGCAGAGCC
1 ACCAGAACAGATAATTGTGGCAGAGCC
64354697 ACCAGAACAGAT-ATATGTGGCAGAGCC
1 ACCAGAACAGATAAT-TGTGGCAGAGCC
* * *
64354724 ACCAGATCAGATAAATGTGGCATAGCC
1 ACCAGAACAGATAATTGTGGCAGAGCC
64354751 ACCAGAAC
1 ACCAGAAC
64354759 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 16 0.20
27 63 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
ACCAGAACAGATAATTGTGGCAGAGCC
Found at i:64356203 original size:24 final size:24
Alignment explanation
Indices: 64356163--64356239 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
64356153 CCAACACTGT
*
64356163 TCTCCCTAATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
64356187 TCTCCCTTATTAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
64356211 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
64356235 TCTCC
1 TCTCC
64356240 TAACAAACTT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.25, C:0.40, G:0.01, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:64359018 original size:21 final size:20
Alignment explanation
Indices: 64358994--64359033 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
64358984 TATGTATTTT
64358994 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
64359015 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
64359034 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:64359041 original size:20 final size:21
Alignment explanation
Indices: 64358999--64359041 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
64358989 ATTTTAATGA
*
64358999 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
64359020 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
64359040 TT
1 TT
64359042 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:64359624 original size:42 final size:42
Alignment explanation
Indices: 64359531--64359640 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
64359521 ATCAGGGATA
* * *
64359531 GTTATCGAGATAGCTTTGGCTATGT-CTGGCACTTCATGTGC
1 GTTATCGAGATGGCTTTGGCTATGTATTGGCACTTCATATGC
* * * *
64359572 ATTATTGAGATGGCTTTGACTATGTATTGGCATTTCATATGC
1 GTTATCGAGATGGCTTTGGCTATGTATTGGCACTTCATATGC
*
64359614 GTTATCGAGATGGCTTCGGCTATGTAT
1 GTTATCGAGATGGCTTTGGCTATGTAT
64359641 ATTGGCAGTT
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
41 21 0.37
42 36 0.63
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.39
Consensus pattern (42 bp):
GTTATCGAGATGGCTTTGGCTATGTATTGGCACTTCATATGC
Found at i:64365086 original size:2 final size:2
Alignment explanation
Indices: 64365079--64365104 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64365069 AACCATTCAC
64365079 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64365105 TATTAGCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64366116 original size:45 final size:44
Alignment explanation
Indices: 64365958--64366116 Score: 127
Period size: 45 Copynumber: 3.7 Consensus size: 44
64365948 ATATCATACA
*
64365958 ATGCCAACGTCCCAGACGTGGTCTT-CAATGCT-ATCAC-ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-ACG-TAATCACAATATCG
*
64366001 ATGCC-ACTGTCCCAGACAG-GGTCATACACG-AATCA-AATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACAATATCG
* * * * * * * *
64366042 ATGTCGATGTCCTAAACATGGTTTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACA-ATATCG
64366087 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
64366117 AGAATACGTA
Statistics
Matches: 88, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
41 22 0.25
42 14 0.16
43 22 0.25
44 5 0.06
45 25 0.28
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAATATCG
Found at i:64368719 original size:40 final size:40
Alignment explanation
Indices: 64368660--64368827 Score: 257
Period size: 40 Copynumber: 4.2 Consensus size: 40
64368650 CCTTTGGGAT
* *
64368660 TTAG-CCGGATATAGCAACTCGCACAAATGCCATCGGAAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAAC
*
64368699 TTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGAAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAAC
* *
64368739 TTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAAC
* *
64368779 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGATC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAAC
*
64368819 TTAGTCCGG
1 TTAGCCCGG
64368828 TTATCATCCG
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 4 0.03
40 115 0.97
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAAC
Found at i:64376537 original size:40 final size:40
Alignment explanation
Indices: 64376460--64376626 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
64376450 TGAATGATAC
* *
64376460 CCGGGCTAAGTCCC-AAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* *
64376499 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *** *
64376539 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
64376579 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
64376619 CC-GGCTAA
1 CCGGGCTAA
64376627 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 18 0.17
40 86 0.81
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:64380505 original size:29 final size:29
Alignment explanation
Indices: 64380466--64380552 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
64380456 CAAAGATAAC
*
64380466 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
64380495 GAGAAACCCGAATAAAGAAATCCAA-ATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
* * * *
64380523 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
64380553 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 6 0.12
29 40 0.82
30 3 0.06
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:64380540 original size:15 final size:14
Alignment explanation
Indices: 64380466--64380548 Score: 76
Period size: 14 Copynumber: 5.8 Consensus size: 14
64380456 CAAAGATAAC
* *
64380466 AAGAAAACCGAATA
1 AAGAAATCCAAATA
64380480 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
* * *
64380495 GAGAAACCCGAATA
1 AAGAAATCCAAATA
64380509 AAGAAATCCAAATA
1 AAGAAATCCAAATA
* *
64380523 AAGAGATCCAGGATA
1 AAGAAATCCA-AATA
*
64380538 AAGAAACCCAA
1 AAGAAATCCAA
64380549 GATACGATAC
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
14 32 0.59
15 22 0.41
ACGTcount: A:0.58, C:0.17, G:0.16, T:0.10
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:64383634 original size:46 final size:46
Alignment explanation
Indices: 64383468--64383688 Score: 295
Period size: 46 Copynumber: 4.8 Consensus size: 46
64383458 TGTAACCTGC
* * *
64383468 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * * *
64383513 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGACTAGTTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-CAT
* *
64383561 ATC-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 -CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
64383606 CCATAAGTGAACTCTGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
64383652 CCATAAGTGAACTCTGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64383689 TGCCCAAATA
Statistics
Matches: 156, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
44 1 0.01
45 39 0.25
46 79 0.51
47 32 0.21
48 4 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:64386525 original size:19 final size:18
Alignment explanation
Indices: 64386500--64386547 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
64386490 AAAGAAATGA
*
64386500 AAAAAAAAAAGAGAATATG
1 AAAAAAAAAAGAGAA-AAG
*
64386519 AAGAAAAACAA-AGAAAAG
1 AA-AAAAAAAAGAGAAAAG
64386537 AAAAAAAAAAG
1 AAAAAAAAAAG
64386548 TGTTCATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 6 0.25
20 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAAAAAAGAGAAAAG
Found at i:64387737 original size:29 final size:29
Alignment explanation
Indices: 64387704--64387796 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
64387694 TGACGAGATT
* *
64387704 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
64387733 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
64387762 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
64387791 GGCACT
1 GGCACT
64387797 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:64387809 original size:29 final size:29
Alignment explanation
Indices: 64387704--64387809 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
64387694 TGACGAGATT
* *
64387704 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
64387733 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
64387762 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
64387791 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
64387810 CGGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:64392159 original size:22 final size:22
Alignment explanation
Indices: 64392131--64392174 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
64392121 CCCCAGTGTT
64392131 AGTACAGCCGGAGTCCGGTAAA
1 AGTACAGCCGGAGTCCGGTAAA
64392153 AGTACAGCCGGAGTCCGGTAAA
1 AGTACAGCCGGAGTCCGGTAAA
64392175 GAGTTTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.32, T:0.14
Consensus pattern (22 bp):
AGTACAGCCGGAGTCCGGTAAA
Found at i:64398330 original size:47 final size:45
Alignment explanation
Indices: 64398212--64398382 Score: 179
Period size: 45 Copynumber: 3.7 Consensus size: 45
64398202 TAGGATATTG
*
64398212 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGA-GGATGCGA
* * *
64398258 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGGATG---CGA
* *
64398304 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GGATGCG-A
* *
64398352 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
64398383 TTATGGCGGG
Statistics
Matches: 107, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
45 33 0.31
46 30 0.28
47 31 0.29
48 5 0.05
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (45 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGGATGCGA
Found at i:64398380 original size:93 final size:92
Alignment explanation
Indices: 64398212--64398382 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
64398202 TAGGATATTG
* *
64398212 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGT
64398277 TGAGTCCGAGTTCGTGAGATGTAACTA
66 TGAGTCCGAGTTCGTGAGATGTAACTA
* *
64398304 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAACTCGTTGAG
64398369 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
64398383 TTATGGCGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 33 0.45
93 41 0.55
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64401537 original size:32 final size:32
Alignment explanation
Indices: 64401500--64401564 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
64401490 AGGATGGCAT
*
64401500 AAAGCCACTAGTAGCTGTAATATAATCAGCAC
1 AAAGCCACTAGTAGCTGTAATATAATCAACAC
* * *
64401532 AAAGCCATTAGTAGCTGTAGTATGATCAACAC
1 AAAGCCACTAGTAGCTGTAATATAATCAACAC
64401564 A
1 A
64401565 GAGTCATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (32 bp):
AAAGCCACTAGTAGCTGTAATATAATCAACAC
Found at i:64402992 original size:26 final size:27
Alignment explanation
Indices: 64402963--64403023 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
64402953 CAAAACAGTC
*
64402963 ATTTTACCCTACAAGGG-ATTTCGATA
1 ATTTTACACTACAAGGGCATTTCGATA
* *
64402989 ATTTTACACTACAAGGGCATTTTGGTA
1 ATTTTACACTACAAGGGCATTTCGATA
64403016 ATTTTACA
1 ATTTTACA
64403024 AATCGGGGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGCATTTCGATA
Found at i:64404183 original size:25 final size:25
Alignment explanation
Indices: 64404149--64404198 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64404139 GTCGTTTGAC
64404149 AAAAATCGAAGGAAATGACAAAAAG
1 AAAAATCGAAGGAAATGACAAAAAG
64404174 AAAAATCGAAGGAAATGACAAAAAG
1 AAAAATCGAAGGAAATGACAAAAAG
64404199 GAAGAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.08, G:0.20, T:0.08
Consensus pattern (25 bp):
AAAAATCGAAGGAAATGACAAAAAG
Found at i:64404607 original size:24 final size:25
Alignment explanation
Indices: 64404562--64404617 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
64404552 CCTAAAATCC
* *
64404562 CTCCATGATTTCCTCCCCAATCT-T
1 CTCCTTGATTTCCTCCACAATCTAT
* *
64404586 CTCCTTGATTTTCTCCATAATCTAT
1 CTCCTTGATTTCCTCCACAATCTAT
64404611 -TCCTTGA
1 CTCCTTGA
64404618 CCAGTTCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.18, C:0.34, G:0.05, T:0.43
Consensus pattern (25 bp):
CTCCTTGATTTCCTCCACAATCTAT
Found at i:64409420 original size:19 final size:19
Alignment explanation
Indices: 64409396--64409433 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
64409386 CTTACTAAAC
64409396 TTTCAAAAATTCCATCCAT
1 TTTCAAAAATTCCATCCAT
64409415 TTTCAAAAATTCCATCCAT
1 TTTCAAAAATTCCATCCAT
64409434 GTCCAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (19 bp):
TTTCAAAAATTCCATCCAT
Found at i:64412593 original size:42 final size:41
Alignment explanation
Indices: 64412537--64412628 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
64412527 CTTAGCTATG
* *
64412537 GTCTTACACGAAATCTCATATCGACGCCATATGCCAGATATA
1 GTCTTACACAAAATCTCATAT-GACGCCATATCCCAGATATA
* * * *
64412579 GTCTTACACAAAATCTCATATGATGTCGTATCCCAGATATG
1 GTCTTACACAAAATCTCATATGACGCCATATCCCAGATATA
64412620 GTCTTACAC
1 GTCTTACAC
64412629 GTAATCTTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 24 0.55
42 20 0.45
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (41 bp):
GTCTTACACAAAATCTCATATGACGCCATATCCCAGATATA
Found at i:64412627 original size:41 final size:42
Alignment explanation
Indices: 64412481--64412628 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 42
64412471 ACCAATGCCT
* *** *
64412481 TATCCAAGATATGGTCTTACATGTAATCTCATATCGATGCCAA
1 TATCCCAGATATGGTCTTACACAAAATCTCATATCGACGCC-A
* ** * *
64412524 TAACTTAGCTATGGTCTTACACGAAATCTCATATCGACGCCA
1 TATCCCAGATATGGTCTTACACAAAATCTCATATCGACGCCA
* * * * *
64412566 TATGCCAGATATAGTCTTACACAAAATCTCATAT-GATGTCG
1 TATCCCAGATATGGTCTTACACAAAATCTCATATCGACGCCA
64412607 TATCCCAGATATGGTCTTACAC
1 TATCCCAGATATGGTCTTACAC
64412629 GTAATCTTAG
Statistics
Matches: 86, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
41 24 0.28
42 28 0.33
43 34 0.40
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (42 bp):
TATCCCAGATATGGTCTTACACAAAATCTCATATCGACGCCA
Found at i:64422776 original size:43 final size:42
Alignment explanation
Indices: 64422710--64422853 Score: 130
Period size: 42 Copynumber: 3.4 Consensus size: 42
64422700 TGTTATATCC
* * *
64422710 CAGATATGGTCTTACATGTAATCTCACA-CTGATGCCAGTAGCG
1 CAGATATGGTCTTACACGAAATCTCACATC-GACGCCA-TAGCG
* * * * *
64422753 CAGCTATGGTCTTCCACGAAATCTCATATCGACGCCATATCT
1 CAGATATGGTCTTACACGAAATCTCACATCGACGCCATAGCG
* ** * *
64422795 CAGATATGGTCTTACACGAAATCTCATAT-GATTCCATATCC
1 CAGATATGGTCTTACACGAAATCTCACATCGACGCCATAGCG
*
64422836 CAAATATGGTCTTACACG
1 CAGATATGGTCTTACACG
64422854 TAGTCTTAGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 26 0.30
42 30 0.35
43 29 0.34
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
CAGATATGGTCTTACACGAAATCTCACATCGACGCCATAGCG
Found at i:64422813 original size:42 final size:42
Alignment explanation
Indices: 64422704--64422853 Score: 169
Period size: 43 Copynumber: 3.6 Consensus size: 42
64422694 TACCAATGTT
* * *
64422704 ATATCCCAGATATGGTCTTACATGTAATCTCACA-CTGATGCC
1 ATATCCCAGATATGGTCTTACACGAAATCTCATATC-GATGCC
* * * * *
64422746 AGTAGCGCAGCTATGGTCTTCCACGAAATCTCATATCGACGCC
1 A-TATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCC
* *
64422789 ATATCTCAGATATGGTCTTACACGAAATCTCATAT-GATTCC
1 ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCC
*
64422830 ATATCCCAAATATGGTCTTACACG
1 ATATCCCAGATATGGTCTTACACG
64422854 TAGTCTTAGT
Statistics
Matches: 90, Mismatches: 16, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
41 26 0.29
42 31 0.34
43 32 0.36
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCC
Found at i:64428509 original size:27 final size:27
Alignment explanation
Indices: 64428477--64428861 Score: 156
Period size: 27 Copynumber: 14.3 Consensus size: 27
64428467 CTCAAATTGT
* *
64428477 AAAATTACCAAAGTACCCTCGATTTAG
1 AAAATTACCAAATTACCCTCGATTTAC
* ***
64428504 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ** *
64428531 AAAATTACTATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
*** *
64428558 AAAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ****
64428585 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* * * *
64428612 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* * * *
64428639 AAAATTACCAAAATACCCACGA-TCAGT
1 AAAATTACCAAATTACCCTCGATTTA-C
* * * **
64428666 AAAATTACCAAAATACCCTAG-TCTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * **
64428692 AAAATTGCTAAAATACCC-CTGGTTTGT
1 AAAATTACCAAATTACCCTC-GATTTAC
* **
64428719 AAAATTACCGAAA-TACCCTCAATTTGT
1 AAAATTACC-AAATTACCCTCGATTTAC
* * **
64428746 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAATTACCCTCGA-TTTAC
* * **
64428773 AAAATTACCAAAATACCACT-GGTTTGT
1 AAAATTACCAAATTACC-CTCGATTTAC
* * **
64428800 GAAATTACCGAAA-TACCCTCAATTTGT
1 AAAATTACC-AAATTACCCTCGATTTAC
*
64428827 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACCAAATTACCCTC-GATTTAC
*
64428854 AAAGTTAC
1 AAAATTAC
64428862 AGAAATACCC
Statistics
Matches: 290, Mismatches: 54, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
26 31 0.11
27 251 0.87
28 8 0.03
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:64428523 original size:54 final size:54
Alignment explanation
Indices: 64428465--64428576 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 54
64428455 TACTGAAATG
** *
64428465 CCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTAGAGAATTACCGTTTTA
1 CCCTCAAATTACAAAATTACCAAAGTACCCTCGATTTAGAAAATTACCGTTTTA
* * * *** *
64428519 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCAAATTACAAAATTACCAAAGTACCCTCGATTTAGAAAATTACCGTTTTA
64428573 CCCT
1 CCCT
64428577 TGATTTACAG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (54 bp):
CCCTCAAATTACAAAATTACCAAAGTACCCTCGATTTAGAAAATTACCGTTTTA
Found at i:64428629 original size:81 final size:81
Alignment explanation
Indices: 64428445--64428661 Score: 245
Period size: 81 Copynumber: 2.7 Consensus size: 81
64428435 AATACTTTAG
* * * * * * *
64428445 TTTACCAAATTACTGAAATGCCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTAGAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
64428510 ACCGTTTTACCCTCGA
66 ACCGTTTTACCCTCGA
*** **** *
64428526 TTTACAAAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
*
64428591 ACTGTTTTACCCTCGA
66 ACCGTTTTACCCTCGA
* * * * *
64428607 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCACGAT
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGAT
64428662 CAGTAAAATT
Statistics
Matches: 108, Mismatches: 28, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
81 108 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
ACCGTTTTACCCTCGA
Found at i:64428656 original size:54 final size:54
Alignment explanation
Indices: 64428477--64428957 Score: 272
Period size: 54 Copynumber: 8.9 Consensus size: 54
64428467 CTCAAATTGT
* * **** * *
64428477 AAAATTACCAAAGTACCCTCGATTTAG-AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTT-GTAAAATTACCAAAATACCCTTGGTTTAC
* *** * **** *
64428531 AAAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTAC
* ***** ** *
64428585 AGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTAC
* ** * * **
64428639 AAAATTACCAAAATACCCACGATCAGTAAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTAC
* * * * *** **
64428692 AAAATTGCTAAAATACCC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTTGGTTTAC
* **
64428746 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGTAAAATTACCAAAATACC-CTTGGTTTAC
* * * * *
64428800 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTAC
* * * *** *
64428854 AAAGTTA-CAGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTAC
1 AAAATTACCA-AAATACCCTCGA-TTTGT-AAAATTACCAAAATACCCTTGGTTTAC
** * * * * *
64428910 AAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTG
64428958 TAGGATGAAA
Statistics
Matches: 337, Mismatches: 79, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
52 1 0.00
53 43 0.13
54 244 0.72
55 11 0.03
56 38 0.11
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTAC
Found at i:64428683 original size:81 final size:80
Alignment explanation
Indices: 64428598--64428874 Score: 308
Period size: 81 Copynumber: 3.4 Consensus size: 80
64428588 ATTACTGTTT
** * * * *
64428598 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCACGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
*
64428663 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** * *
64428679 TA-CCCTAGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
64428743 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** * *
64428759 TACCCCTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAAT
64428823 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
*
64428840 TACCCCTGATTTACAAAGTTAC-AGAAATACCCTTG
1 TACCCC-GATTTACAAAATTACTA-AAATACCCTTG
64428875 ACTTTCTAAA
Statistics
Matches: 169, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
79 2 0.01
80 66 0.39
81 99 0.59
82 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (80 bp):
TACCCCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:64428922 original size:27 final size:27
Alignment explanation
Indices: 64428883--64428934 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
64428873 TGACTTTCTA
64428883 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
64428910 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
64428935 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:64430002 original size:24 final size:24
Alignment explanation
Indices: 64429951--64430162 Score: 326
Period size: 23 Copynumber: 9.0 Consensus size: 24
64429941 GCTTTATCAT
*
64429951 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
64429976 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
64430000 ATAACTGGGGCATGAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64430023 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
64430046 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64430070 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64430094 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64430117 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64430140 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64430163 GCACTTCCTC
Statistics
Matches: 177, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
23 90 0.51
24 75 0.42
25 12 0.07
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64430131 original size:94 final size:94
Alignment explanation
Indices: 64429951--64430163 Score: 356
Period size: 94 Copynumber: 2.3 Consensus size: 94
64429941 GCTTTATCAT
* * *
64429951 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
64430015 GCCCTTTAATAACTGGGGCATAAGCCCTTTA
64 GCCCTTTAATAACTGGGGCATAAGCCCTTTA
* *
64430046 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
64430111 CCTTTAATAACTGGGGCATAAGCCCTTTA
66 CCTTTAATAACTGGGGCATAAGCCCTTTA
64430140 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
64430164 CACTTCCTCC
Statistics
Matches: 112, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
94 100 0.89
95 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (94 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:64430234 original size:9 final size:9
Alignment explanation
Indices: 64430220--64430276 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
64430210 ATCTCATGTG
64430220 CATATCATA
1 CATATCATA
*
64430229 CATATCATGTG
1 CATATCA--TA
64430240 CATATCATA
1 CATATCATA
* *
64430249 CATGTCATGTG
1 CATATCA--TA
64430260 CATATCATA
1 CATATCATA
64430269 CATATCAT
1 CATATCAT
64430277 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:64430236 original size:20 final size:20
Alignment explanation
Indices: 64430208--64430278 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
64430198 GCATTTATGA
*
64430208 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
64430228 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
64430248 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
64430268 ACATATCATGT
1 ACATATCATGT
64430279 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:64430243 original size:11 final size:11
Alignment explanation
Indices: 64430213--64430267 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
64430203 TATGAACATC
64430213 TCATGTGCATA
1 TCATGTGCATA
*
64430224 TCA--TACATA
1 TCATGTGCATA
64430233 TCATGTGCATA
1 TCATGTGCATA
* *
64430244 TCA--TACATG
1 TCATGTGCATA
64430253 TCATGTGCATA
1 TCATGTGCATA
64430264 TCAT
1 TCAT
64430268 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:64431595 original size:27 final size:27
Alignment explanation
Indices: 64431574--64431835 Score: 305
Period size: 27 Copynumber: 9.7 Consensus size: 27
64431564 AAGGGTATTT
*
64431574 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
64431601 CAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
64431628 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
64431655 TGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
64431682 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
64431709 CAATAATTATGTAAATCG-GGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
64431735 TGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** *
64431762 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
64431789 TAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
64431816 CGGTAATTCTGTAAATCGAG
1 TAGTAATTCTGTAAATCGAG
64431836 AGTACTTTGG
Statistics
Matches: 205, Mismatches: 25, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
26 22 0.11
27 181 0.88
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:64431779 original size:134 final size:135
Alignment explanation
Indices: 64431577--64431835 Score: 389
Period size: 134 Copynumber: 1.9 Consensus size: 135
64431567 GGTATTTTAG
* * * *
64431577 TAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATAGAGGGTAAAACAGTAATTCTATAA
**
64431642 ATCGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
66 ATCGAGGGTAAAATAATAATTCTATAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
64431706 AAACAA
130 AAACAA
** *
64431712 TAATTATGTAAATCG-GGGTAAAATGGTAATTATGTAAATTAG-GGGTAAAACGGTAATTCTATA
1 TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAA-TAGAGGGTAAAACAGTAATTCTATA
*
64431775 AATCGAGGGTAAAATAATAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
65 AATCGAGGGTAAAATAATAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
64431836 AGTACTTTGG
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
134 95 0.85
135 17 0.15
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (135 bp):
TAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATAGAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAATAATAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAA
AACAA
Found at i:64431824 original size:54 final size:54
Alignment explanation
Indices: 64431574--64431835 Score: 341
Period size: 54 Copynumber: 4.9 Consensus size: 54
64431564 AAGGGTATTT
* * *
64431574 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
* * *
64431628 TAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
** ** *
64431682 CGGTAATTCTGTAAATCGAGGGTAAAACAATAATTATGTAAATCG-GGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
* * * *
64431735 TGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
*
64431789 TAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAG
1 TAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAG
64431836 AGTACTTTGG
Statistics
Matches: 178, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
52 1 0.01
53 44 0.25
54 132 0.74
55 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:64432931 original size:27 final size:27
Alignment explanation
Indices: 64432878--64432955 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
64432868 GTGTTACAAA
* * *
64432878 AATACCCCTATTA-GGTAAAAAGGCCGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
* *
64432905 AA-AGCCCTTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
*
64432932 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
64432956 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 3 0.08
27 36 0.90
28 1 0.03
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:64433823 original size:25 final size:25
Alignment explanation
Indices: 64433762--64433848 Score: 129
Period size: 25 Copynumber: 3.4 Consensus size: 25
64433752 AAGTGCAAAA
*
64433762 TTGCCCCAGTTTACCGAAAAGGGCT
1 TTGCCCCAGTTTACAGAAAAGGGCT
**
64433787 TATGCCCCAGTTTATTGAAAAGGGCT
1 T-TGCCCCAGTTTACAGAAAAGGGCT
*
64433813 TTGCCCAAGTTTACAGAAAAGGGCT
1 TTGCCCCAGTTTACAGAAAAGGGCT
64433838 TTGCCCCAGTT
1 TTGCCCCAGTT
64433849 ATTAAAGAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
25 32 0.58
26 23 0.42
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
TTGCCCCAGTTTACAGAAAAGGGCT
Found at i:64434052 original size:42 final size:42
Alignment explanation
Indices: 64433993--64434084 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
64433983 TAGTCTCCCC
* ** *
64433993 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
64434035 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
64434077 AAATGGGC
1 AAATGGGC
64434085 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:64437365 original size:35 final size:36
Alignment explanation
Indices: 64437278--64437573 Score: 297
Period size: 35 Copynumber: 8.5 Consensus size: 36
64437268 GTGGCAAAGT
* *
64437278 TATGATACGTAGGTATGGTATC-AACCATACTGAGC
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
*
64437313 T-TGATAAGTAGGTATGGCATCGAT-CATACTGAGC
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
* *
64437347 TATGATACGTAGGCATGGCATCGA-CCATACTTAGC
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
* *
64437382 TATGATACGTAGGTATGGCAT-AATCCATACTGAAC
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
* *
64437417 TATGATACGTAGGTATGGCATCG-TCCATACTAAGT
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
* * *
64437452 TATGACATGTAGGTATGGCATCG-TCCATACTGAGT
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
* * ** *
64437487 TATGAAACGTAGGTATGGTAT-TTTCCATACTGAGT
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
* * * ** *
64437522 TATGAAATGTAGGTATGGTAT-TTTCCATACCGAG-
1 TATGATACGTAGGTATGGCATCGATCCATACTGAGC
* *
64437556 TATGAAATGTAGGTATGG
1 TATGATACGTAGGTATGG
64437574 TATTTCAATA
Statistics
Matches: 232, Mismatches: 23, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
34 48 0.21
35 184 0.79
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (36 bp):
TATGATACGTAGGTATGGCATCGATCCATACTGAGC
Found at i:64437549 original size:105 final size:103
Alignment explanation
Indices: 64437275--64437573 Score: 334
Period size: 105 Copynumber: 2.9 Consensus size: 103
64437265 CCCGTGGCAA
64437275 AGTTATGATACGTAGGTATGGTATCAA-CCATACTGAGCT-TGATAAGTAGGTATGGCATCGAT-
1 AGTTATGATACGTAGGTATGGTAT-AATCCATACTGAGCTATGA-AAGTAGGTATGGCATC-ATC
* * * *
64437337 CATACTGAGCTATGATACGTAGGCATGGCATCGACCATACTT
63 CATACTGAG-TATGAAATGTAGGTATGGCATCGACCATACTG
* * * * *
64437379 AGCTATGATACGTAGGTATGGCATAATCCATACTGAACTATGATACGTAGGTATGGCATCGTCCA
1 AGTTATGATACGTAGGTATGGTATAATCCATACTGAGCTATGA-AAGTAGGTATGGCATCATCCA
* * *
64437444 TACTAAGTTATGACATGTAGGTATGGCATCGTCCATACTG
65 TACTGAG-TATGAAATGTAGGTATGGCATCGACCATACTG
* ** * * **
64437484 AGTTATGAAACGTAGGTATGGTATTTTCCATACTGAGTTATGAAATGTAGGTATGGTATTTTCCA
1 AGTTATGATACGTAGGTATGGTATAATCCATACTGAGCTATGAAA-GTAGGTATGGCATCATCCA
*
64437549 TACCGAGTATGAAATGTAGGTATGG
65 TACTGAGTATGAAATGTAGGTATGG
64437574 TATTTCAATA
Statistics
Matches: 165, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
103 2 0.01
104 52 0.32
105 111 0.67
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (103 bp):
AGTTATGATACGTAGGTATGGTATAATCCATACTGAGCTATGAAAGTAGGTATGGCATCATCCAT
ACTGAGTATGAAATGTAGGTATGGCATCGACCATACTG
Found at i:64441285 original size:42 final size:42
Alignment explanation
Indices: 64441186--64441554 Score: 483
Period size: 42 Copynumber: 8.8 Consensus size: 42
64441176 AACGAGTACA
* * ** *
64441186 ATGCCGACGTCCCGGATGTGGTCTTACATGTAATTCAG-TATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAA-TCAGATA-CG
* ** * *
64441229 ATTCCTTTGTCCCAGACA-GTGTCTTACAGGAAATCAGATACG
1 ATGCCGATGTCCCAGACATG-GTCTTACACGTAATCAGATACG
* *
64441271 ATGCCGATGTCCCAGATATGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
64441313 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
*
64441355 ATGTCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
*
64441397 ATGCC-ATGTCCCAGACATGGTCTTACACGTAATCAGATACT
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
* * *
64441438 ATGCCGATATCCCAGACATGGTCTTACATGTAATCAGATATG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
* * *
64441480 ATGCCGATATCCAAGACATGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
* * *
64441522 ATGCTGATGTCCTAGACACGGTCTTACACGTAA
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAA
64441555 ATCTCAAATT
Statistics
Matches: 290, Mismatches: 32, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
41 40 0.14
42 225 0.78
43 25 0.09
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAGATACG
Found at i:64441517 original size:167 final size:169
Alignment explanation
Indices: 64441204--64441595 Score: 501
Period size: 167 Copynumber: 2.3 Consensus size: 169
64441194 GTCCCGGATG
* * * *
64441204 TGGTCTTACATGTAATTCAGTATCGATTCCTTTGTCCCAGACAGTGTCTTACAGGAAATCAGATA
1 TGGTCTTACACGTAATTCAGTATCGATGCCTATGTCCCAGACAGTGTCTTACACGAAATCAGATA
* * * *
64441269 CGATGCCGATGTCCCAGATATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGG
66 CGATGCCGATATCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATATCCAAGACATGG
*
64441334 TCTTACACGTAATCAGATACGATG-TCGATGTCCCAGACA
131 TCTTACACGAAATCAGATACGATGCT-GATGTCCCAGACA
*
64441373 TGGTCTTACACGTAA-TCAG-ATACGATGCC-ATGTCCCAGACA-TGGTCTTACACGTAATCAGA
1 TGGTCTTACACGTAATTCAGTAT-CGATGCCTATGTCCCAGACAGT-GTCTTACACGAAATCAGA
* * * *
64441434 TACTATGCCGATATCCCAGACATGGTCTTACATGTAATCAGATATGATGCCGATATCCAAGACAT
64 TACGATGCCGATATCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATATCCAAGACAT
*
64441499 GGTCTTACACGAAATCAGATACGATGCTGATGTCCTAGACA
129 GGTCTTACACGAAATCAGATACGATGCTGATGTCCCAGACA
* * * * *
64441540 CGGTCTTACACGTAAATCTCA-AATTGAGGTCTATGTCCCAGACACG-GTCTTACACG
1 TGGTCTTACACGT-AAT-TCAGTATCGATGCCTATGTCCCAGACA-GTGTCTTACACG
64441596 TTATCTCAGA
Statistics
Matches: 194, Mismatches: 19, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
166 1 0.01
167 135 0.70
168 13 0.07
169 18 0.09
170 27 0.14
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (169 bp):
TGGTCTTACACGTAATTCAGTATCGATGCCTATGTCCCAGACAGTGTCTTACACGAAATCAGATA
CGATGCCGATATCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATATCCAAGACATGG
TCTTACACGAAATCAGATACGATGCTGATGTCCCAGACA
Found at i:64449797 original size:39 final size:39
Alignment explanation
Indices: 64449747--64449824 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
64449737 ACAGATATAG
64449747 CCATTTCCGTTAAATAAATATCCCATATAGAACGATATC
1 CCATTTCCGTTAAATAAATATCCCATATAGAACGATATC
* *
64449786 CCATTTTCGTTAAATAAATATCCCATATAGAGCGATATC
1 CCATTTCCGTTAAATAAATATCCCATATAGAACGATATC
64449825 AACCCCGATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (39 bp):
CCATTTCCGTTAAATAAATATCCCATATAGAACGATATC
Found at i:64452189 original size:40 final size:40
Alignment explanation
Indices: 64452134--64452297 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
64452124 TGAATGATAC
* * *
64452134 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
64452174 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
64452214 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
64452254 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
64452294 CCGG
1 CCGG
64452298 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:64452267 original size:80 final size:80
Alignment explanation
Indices: 64452134--64452311 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
64452124 TGAATGATAC
* * * * * *
64452134 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
64452198 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
64452214 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
64452279 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
64452294 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
64452312 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:64461370 original size:27 final size:28
Alignment explanation
Indices: 64461314--64461383 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
64461304 AAATTTGTAC
64461314 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
64461342 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
64461369 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64461384 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:64469168 original size:17 final size:18
Alignment explanation
Indices: 64469134--64469170 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
64469124 TTTAGGATTC
64469134 ATTTTTTTTCCTTCTTCT
1 ATTTTTTTTCCTTCTTCT
64469152 ATTTTTTATT-CTT-TTCT
1 ATTTTTT-TTCCTTCTTCT
64469169 AT
1 AT
64469171 CCTTCTCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 10 0.56
19 2 0.11
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (18 bp):
ATTTTTTTTCCTTCTTCT
Found at i:64472952 original size:23 final size:22
Alignment explanation
Indices: 64472900--64472952 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
64472890 TAAAGTTCAT
64472900 TGAATTGGTATAAACATGAAGA
1 TGAATTGGTATAAACATGAAGA
*
64472922 TGGTATTGGTATAAA-ATTGATAGA
1 T-GAATTGGTATAAACA-TGA-AGA
64472946 TGAATTG
1 TGAATTG
64472953 AGAATGTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.08
23 20 0.77
24 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.25, T:0.34
Consensus pattern (22 bp):
TGAATTGGTATAAACATGAAGA
Found at i:64475799 original size:29 final size:29
Alignment explanation
Indices: 64475738--64475827 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
64475728 CACATACTTG
*
64475738 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
64475766 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
64475795 TATATGGACCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
64475824 TATA
1 TATA
64475828 GTCATGCTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 18 0.32
29 39 0.68
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:64478923 original size:37 final size:36
Alignment explanation
Indices: 64478873--64478959 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
64478863 TACAAAGTCT
64478873 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
64478909 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
64478946 TCACCCGGAACATA
1 T-ACCCGG-ACATA
64478960 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:64479095 original size:49 final size:49
Alignment explanation
Indices: 64479028--64479706 Score: 1127
Period size: 49 Copynumber: 14.1 Consensus size: 49
64479018 TTTACCACAT
* *
64479028 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64479077 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64479126 ATATATATACACTTTCACA-T--T--CAT----CA-TAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
64479165 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64479214 ATATATATACATTTTCACATTCATCACATCGGCCATTGGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64479263 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64479312 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64479361 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64479410 ATATATATACATTTTCACATTCAT--CA-CGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
64479456 --ATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64479503 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64479552 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64479601 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64479652 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64479701 ATATAT
1 ATATAT
64479707 TATTATGTAC
Statistics
Matches: 599, Mismatches: 14, Indels: 34
0.93 0.02 0.05
Matches are distributed among these distances:
39 32 0.05
40 3 0.01
42 1 0.00
44 26 0.04
46 22 0.04
47 22 0.04
48 3 0.01
49 442 0.74
51 48 0.08
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:64479145 original size:18 final size:18
Alignment explanation
Indices: 64479122--64479184 Score: 67
Period size: 18 Copynumber: 3.3 Consensus size: 18
64479112 TTAGGCCTTA
64479122 TCACATATATATACACTT
1 TCACATATATATACACTT
64479140 TCACAT-TCATCATAGGC-CTT
1 TCACATAT-AT-ATA--CACTT
64479160 ATCACATATATATACACTT
1 -TCACATATATATACACTT
64479179 TCACAT
1 TCACAT
64479185 TCATCACGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
17 1 0.03
18 15 0.39
19 6 0.16
20 6 0.16
21 9 0.24
22 1 0.03
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (18 bp):
TCACATATATATACACTT
Found at i:64479166 original size:21 final size:20
Alignment explanation
Indices: 64479113--64479173 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 20
64479103 CATCGGCCAT
64479113 TAGGCCTTATCACATATATA
1 TAGGCCTTATCACATATATA
64479133 TA--CACTT-TCACAT-TCATCA
1 TAGGC-CTTATCACATAT-AT-A
64479152 TAGGCCTTATCACATATATA
1 TAGGCCTTATCACATATATA
64479172 TA
1 TA
64479174 CACTTTCACA
Statistics
Matches: 34, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
17 1 0.03
18 9 0.26
19 6 0.18
20 8 0.24
21 9 0.26
22 1 0.03
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (20 bp):
TAGGCCTTATCACATATATA
Found at i:64479578 original size:289 final size:284
Alignment explanation
Indices: 64479008--64479706 Score: 1204
Period size: 289 Copynumber: 2.4 Consensus size: 284
64478998 ATTCACATTA
* * * *
64479008 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACA-ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
64479073 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
65 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
64479138 TTTCACATTCATCATAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTA
130 TTTCACATTCATCATAGGCCTTATCACA-ATATATACACTTTCACATTCATCACGTCGGCCATTA
*
64479203 GGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATA
194 GGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
64479268 TATACATTTTCACATTCATCACATCG
259 TATACATTTTCACATTCATCACATCG
64479294 GCCATTAGGCCTTATCAC-ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 GCCATTAGGCCTTATCACAATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
64479358 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATT
66 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
64479423 TTCACATTCATCACGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACGTCGGC
131 TTCACATTCAT------CA-TAGGCCTTATCACAATATATACACTTTCACATTCATCACGTCGGC
*
64479487 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
189 CATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64479552 ATATATATACATTTTCACATTCATCACGTCG
254 ATATATATACATTTTCACATTCATCACATCG
*
64479583 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACA-ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
64479648 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
65 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
64479707 TATTATGTAC
Statistics
Matches: 393, Mismatches: 11, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
284 119 0.30
286 15 0.04
289 142 0.36
290 2 0.01
291 115 0.29
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (284 bp):
GCCATTAGGCCTTATCACAATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
TTCACATTCATCATAGGCCTTATCACAATATATACACTTTCACATTCATCACGTCGGCCATTAGG
CCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
TACATTTTCACATTCATCACATCG
Found at i:64482506 original size:40 final size:41
Alignment explanation
Indices: 64482462--64482564 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 41
64482452 GACTCGCTCG
* * *
64482462 ATTGCCTTTGGGACATAGCCCGG-TTATAGTGA-TTCGCACA
1 ATTGCCTTCGGGACATAGCCCGGATT-TAGTCACTTAGCACA
64482502 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTCACTTAGCACA
1 ATTGCCTTCGGGACA-TAGCCCGGATTTAGTCACTTAGCACA
** *
64482543 AAAGCCTTCGGGACTTAGCCCG
1 ATTGCCTTCGGGACATAGCCCG
64482565 AATACCATTC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
39 1 0.02
40 25 0.47
41 27 0.51
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.27
Consensus pattern (41 bp):
ATTGCCTTCGGGACATAGCCCGGATTTAGTCACTTAGCACA
Found at i:64483359 original size:40 final size:40
Alignment explanation
Indices: 64483310--64483541 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
64483300 CCAGCATGAT
* * *
64483310 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
* *
64483350 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
* * *
64483390 TGCTCTTCGGAATTTAGCCCAGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
*
64483430 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
**
64483470 TGCTCTTCGGAACTTAGTTCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
*
64483510 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGCCCGGATACATCATT
64483542 CTCAATTCTC
Statistics
Matches: 178, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCATTAGCACGAA
Found at i:64485462 original size:37 final size:36
Alignment explanation
Indices: 64485412--64485498 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
64485402 TACAAAGTCT
64485412 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
64485448 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
64485485 TCACCCGGAACATA
1 T-ACCCGG-ACATA
64485499 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:64485634 original size:49 final size:49
Alignment explanation
Indices: 64485567--64486298 Score: 1179
Period size: 49 Copynumber: 15.1 Consensus size: 49
64485557 TTTACCACAT
*
64485567 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
64485616 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
64485665 ATATATATATACACTTTCACATTCATCA-------C---AGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
64485706 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
64485755 ATATATATATACATTTTCACATTCATCACATCGGCCATTGGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
64485806 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
64485855 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
64485904 ATATATATAAATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
64485953 ATATATATACATTTTCACATTCATCA---CGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
64485999 --ATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
64486046 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
64486095 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
64486144 ATATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
64486195 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
64486244 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
64486293 ATATAT
1 ATATAT
64486299 TATTATGTAC
Statistics
Matches: 646, Mismatches: 16, Indels: 42
0.92 0.02 0.06
Matches are distributed among these distances:
39 26 0.04
41 12 0.02
44 24 0.04
46 21 0.03
47 20 0.03
49 423 0.65
51 120 0.19
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:64485721 original size:39 final size:40
Alignment explanation
Indices: 64485653--64485732 Score: 144
Period size: 39 Copynumber: 2.0 Consensus size: 40
64485643 ATCGGCCATT
64485653 AGGCCTTATCACATATATATATACACTTTCACATTCATCAC
1 AGGCCTTATCACA-ATATATATACACTTTCACATTCATCAC
64485694 AGGCCTTATCAC-ATATATATACACTTTCACATTCATCAC
1 AGGCCTTATCACAATATATATACACTTTCACATTCATCAC
64485733 GTCGGCCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 27 0.69
41 12 0.31
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.34
Consensus pattern (40 bp):
AGGCCTTATCACAATATATATACACTTTCACATTCATCAC
Found at i:64485895 original size:149 final size:147
Alignment explanation
Indices: 64485567--64486298 Score: 1224
Period size: 149 Copynumber: 5.0 Consensus size: 147
64485557 TTTACCACAT
64485567 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
*
64485632 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCAT--CA--
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATATACATTTTCACATTCATCACATC
64485693 ---C---AGGCCTTATCAC
129 GGCCATTAGGCCTTATCAC
64485706 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATATACATTT
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC--ATATATATACATTT
*
64485771 TCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACATTTTCACATTCATCACATC
64 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
64485836 GGCCATTAGGCCTTATCAC
129 GGCCATTAGGCCTTATCAC
* *
64485855 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAAATTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
64485920 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCAT--CA-CGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGG
64485982 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
64485999 --ATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
* *
64486062 ACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGG
64486127 CCATTAGGCCTTATCAC
131 CCATTAGGCCTTATCAC
* *
64486144 ATATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTT
1 --ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTT
*
64486209 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
64 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
64486274 GGCCATTAGGCCTTATCAC
129 GGCCATTAGGCCTTATCAC
64486293 ATATAT
1 ATATAT
64486299 TATTATGTAC
Statistics
Matches: 562, Mismatches: 12, Indels: 30
0.93 0.02 0.05
Matches are distributed among these distances:
139 72 0.13
141 50 0.09
142 117 0.21
144 21 0.04
145 22 0.04
146 1 0.00
147 77 0.14
149 202 0.36
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (147 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGG
CCATTAGGCCTTATCAC
Found at i:64489678 original size:42 final size:43
Alignment explanation
Indices: 64489562--64489678 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
64489552 TACCAATGTT
* * * *
64489562 ATATCCCAGAAATGGTCTTACATGTAATCTCATATCGATGCCA
1 ATATCCCAGATATGGTCTTACACGTAATCTTATATCGACGCCA
* * * * *
64489605 ATAGCCTAGCTATGGTCTCACACGAAATCTTATATCGACGCC-
1 ATATCCCAGATATGGTCTTACACGTAATCTTATATCGACGCCA
* *
64489647 ATATCCCAGATATCGTCTTACACGTAGTCTTA
1 ATATCCCAGATATGGTCTTACACGTAATCTTA
64489679 GTAACCCTAA
Statistics
Matches: 58, Mismatches: 16, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACACGTAATCTTATATCGACGCCA
Found at i:64491118 original size:45 final size:45
Alignment explanation
Indices: 64491054--64491160 Score: 133
Period size: 45 Copynumber: 2.4 Consensus size: 45
64491044 GTTATACTCC
* * *
64491054 TAAGACAATAGTTGAAAGATGCTACAACATAATGATAAAAATGAG
1 TAAGACCATAGCTGAAAGATGCTACAACATAATGATAAAAATAAG
* * * * *
64491099 TAAGACCATAGGTGAAAGATGTTATAGCATCATGATAAAAATAAG
1 TAAGACCATAGCTGAAAGATGCTACAACATAATGATAAAAATAAG
*
64491144 TAAGATCATAGCTGAAA
1 TAAGACCATAGCTGAAA
64491161 AACACTATGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.23
Consensus pattern (45 bp):
TAAGACCATAGCTGAAAGATGCTACAACATAATGATAAAAATAAG
Found at i:64491174 original size:45 final size:45
Alignment explanation
Indices: 64491085--64491175 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
64491075 CTACAACATA
* * * ***
64491085 ATGATAAAAATGAGTAAGACCATAGGTGAAAGATGTTATAGCATC
1 ATGATAAAAATAAGTAAGACCATAGCTGAAAAACACTATAGCATC
* *
64491130 ATGATAAAAATAAGTAAGATCATAGCTGAAAAACACTATGGCATC
1 ATGATAAAAATAAGTAAGACCATAGCTGAAAAACACTATAGCATC
64491175 A
1 A
64491176 AGTGAAACAC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (45 bp):
ATGATAAAAATAAGTAAGACCATAGCTGAAAAACACTATAGCATC
Found at i:64496656 original size:139 final size:139
Alignment explanation
Indices: 64496406--64496684 Score: 558
Period size: 139 Copynumber: 2.0 Consensus size: 139
64496396 ATTATGCAAG
64496406 TTTCCACATTCACAGATGACATTAATACAAATATACTCATAATGAGCATTAGCCAACTTACAAGG
1 TTTCCACATTCACAGATGACATTAATACAAATATACTCATAATGAGCATTAGCCAACTTACAAGG
64496471 CTATATACAAAATGAACCATGAACCATTATAAGCCAACACATATGACCAAAAGACCAAGTCCCTA
66 CTATATACAAAATGAACCATGAACCATTATAAGCCAACACATATGACCAAAAGACCAAGTCCCTA
64496536 TACATGCCA
131 TACATGCCA
64496545 TTTCCACATTCACAGATGACATTAATACAAATATACTCATAATGAGCATTAGCCAACTTACAAGG
1 TTTCCACATTCACAGATGACATTAATACAAATATACTCATAATGAGCATTAGCCAACTTACAAGG
64496610 CTATATACAAAATGAACCATGAACCATTATAAGCCAACACATATGACCAAAAGACCAAGTCCCTA
66 CTATATACAAAATGAACCATGAACCATTATAAGCCAACACATATGACCAAAAGACCAAGTCCCTA
64496675 TACATGCCA
131 TACATGCCA
64496684 T
1 T
64496685 AAACTCTAAA
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
139 140 1.00
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.23
Consensus pattern (139 bp):
TTTCCACATTCACAGATGACATTAATACAAATATACTCATAATGAGCATTAGCCAACTTACAAGG
CTATATACAAAATGAACCATGAACCATTATAAGCCAACACATATGACCAAAAGACCAAGTCCCTA
TACATGCCA
Found at i:64497691 original size:42 final size:42
Alignment explanation
Indices: 64497567--64497691 Score: 153
Period size: 43 Copynumber: 3.0 Consensus size: 42
64497557 CACAGTACTG
* * *
64497567 TATCAATGCCATATCCCAGATATGGTCTTACATGAAATCTTA
1 TATCAATGTCATATCCCAGATATGGTCTTACACGAAATCTCA
* * *
64497609 TATCGATGTCAATAGCCCAGCTATGGTCTTACAC-ACAATCTCA
1 TATCAATGTC-ATATCCCAGATATGGTCTTACACGA-AATCTCA
* *
64497652 TATCAATGTCATATCCCAGATATGGTCTTACGCGTAATCT
1 TATCAATGTCATATCCCAGATATGGTCTTACACGAAATCT
64497692 TAGTAACCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (42 bp):
TATCAATGTCATATCCCAGATATGGTCTTACACGAAATCTCA
Found at i:64501002 original size:27 final size:27
Alignment explanation
Indices: 64500954--64501112 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
64500944 GCGGGGCTAC
* *
64500954 CAGATATTGTGAC-GTAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
64500981 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
64501007 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
64501034 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
64501061 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
64501088 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
64501113 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:64501073 original size:81 final size:80
Alignment explanation
Indices: 64500954--64501112 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 80
64500944 GCGGGGCTAC
* * * *
64500954 CAGATATTGTGACGTAGTCACCAGATACAGATATTGTGGTAGAGCCACCAGAACAGAT-ATATGT
1 CAGATATTGTGACATAGCCACCAGAGACAGATATTGTGGCAGAGCCACCAGAACAGATAAT-TGT
64501018 GGCAGAGCCACCAGAT
65 GGCAGAGCCACCAGAT
* *
64501034 CAGATAATTGTGGCATAGCCACCAG-GACAGATATATGTGGCAGAGCCACCAGATCAGATAATTG
1 CAGAT-ATTGTGACATAGCCACCAGAGACAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTG
*
64501098 TGGCATAGCCACCAG
64 TGGCAGAGCCACCAG
64501113 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
80 13 0.19
81 54 0.78
82 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (80 bp):
CAGATATTGTGACATAGCCACCAGAGACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTG
GCAGAGCCACCAGAT
Found at i:64501113 original size:54 final size:54
Alignment explanation
Indices: 64500972--64501115 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
64500962 GTGACGTAGT
* * *
64500972 CACCAGATACAGAT-ATTGTGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
64501026 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
64501080 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
64501116 GCTTCCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:64502763 original size:26 final size:26
Alignment explanation
Indices: 64502732--64502839 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
64502722 TGAAATGCCC
*
64502732 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
64502758 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64502784 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
64502810 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64502836 ATCA
1 ATCA
64502840 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64503720 original size:20 final size:18
Alignment explanation
Indices: 64503695--64503731 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
64503685 ACCTAACACG
64503695 AATTAAATTCAAGCCATATT
1 AATTAAATT-AA-CCATATT
64503715 AATTAAATTAACCATAT
1 AATTAAATTAACCATAT
64503732 CAACATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.35
Consensus pattern (18 bp):
AATTAAATTAACCATATT
Found at i:64506759 original size:24 final size:24
Alignment explanation
Indices: 64506696--64506762 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
64506686 GTTGATGGAT
*
64506696 AGTAAACTCTAATGAGCTG-AAAC
1 AGTAAGCTCTAATGAGCTGAAAAC
* ** *
64506719 GGTAAGCTCCGACGAGCTGAAAAC
1 AGTAAGCTCTAATGAGCTGAAAAC
*
64506743 AGTAAGCTCTTATGAGCTGA
1 AGTAAGCTCTAATGAGCTGA
64506763 TATATCGGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
23 14 0.41
24 20 0.59
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (24 bp):
AGTAAGCTCTAATGAGCTGAAAAC
Found at i:64510725 original size:29 final size:29
Alignment explanation
Indices: 64510675--64510734 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
64510665 ACTACTTAAA
64510675 TTAACTAACCAAAAATAACCTAATAGAAT
1 TTAACTAACCAAAAATAACCTAATAGAAT
* * * * *
64510704 TTAATTAACCTAAGATATCCTAATTGAAT
1 TTAACTAACCAAAAATAACCTAATAGAAT
64510733 TT
1 TT
64510735 CCTATTCCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (29 bp):
TTAACTAACCAAAAATAACCTAATAGAAT
Found at i:64516516 original size:95 final size:95
Alignment explanation
Indices: 64516409--64516588 Score: 279
Period size: 95 Copynumber: 1.9 Consensus size: 95
64516399 TAGATGGACA
* * * *
64516409 ATAGTATCTTCAATAAAACAACACATTAGCAAGTCCAAAGATTTTCATCATTAAATTCCCAAACA
1 ATAGTATCTTCAATAAAACAACACATTAACAACTCCAAAAAATTTCATCATTAAATTCCCAAACA
64516474 AAATAAGGCAAGTATTTACATAAACAGATC
66 AAATAAGGCAAGTATTTACATAAACAGATC
* ** *
64516504 ATAGTATCTTCAATAAAACAACACATTAACAACTCCAAAAAATTTCCTCATTAAATTGTCAAACC
1 ATAGTATCTTCAATAAAACAACACATTAACAACTCCAAAAAATTTCATCATTAAATTCCCAAACA
*
64516569 AAATAAGGTAAGTATTTACA
66 AAATAAGGCAAGTATTTACA
64516589 CCACCTCAGT
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
95 76 1.00
ACGTcount: A:0.47, C:0.19, G:0.07, T:0.27
Consensus pattern (95 bp):
ATAGTATCTTCAATAAAACAACACATTAACAACTCCAAAAAATTTCATCATTAAATTCCCAAACA
AAATAAGGCAAGTATTTACATAAACAGATC
Done.