Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 216 of 770
Found at i:64524972 original size:27 final size:27
Alignment explanation
Indices: 64524936--64524995 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
64524926 ACATAATAAT
*
64524936 CAAAATGGACTTAAACCATAATTAAAC
1 CAAAACGGACTTAAACCATAATTAAAC
64524963 CAAAACGGACTTAAACCATAATTAAAC
1 CAAAACGGACTTAAACCATAATTAAAC
64524990 CAAAAC
1 CAAAAC
64524996 CGAACTCAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.53, C:0.22, G:0.07, T:0.18
Consensus pattern (27 bp):
CAAAACGGACTTAAACCATAATTAAAC
Found at i:64525009 original size:27 final size:27
Alignment explanation
Indices: 64524944--64525001 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
64524934 ATCAAAATGG
*
64524944 ACTTAAACCATAATTAAACCAAAACGG
1 ACTTAAACCATAATTAAACCAAAACGA
64524971 ACTTAAACCATAATTAAACCAAAACCGA
1 ACTTAAACCATAATTAAACCAAAA-CGA
64524999 ACT
1 ACT
64525002 CAAGCATAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.52, C:0.24, G:0.05, T:0.19
Consensus pattern (27 bp):
ACTTAAACCATAATTAAACCAAAACGA
Found at i:64534011 original size:15 final size:15
Alignment explanation
Indices: 64533991--64534026 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
64533981 ACATAGTCTT
*
64533991 AACCTGATCTGACCC
1 AACCTGACCTGACCC
64534006 AACCTGACCTGACCC
1 AACCTGACCTGACCC
*
64534021 GACCTG
1 AACCTG
64534027 TAAACACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.25, C:0.42, G:0.17, T:0.17
Consensus pattern (15 bp):
AACCTGACCTGACCC
Found at i:64534408 original size:2 final size:2
Alignment explanation
Indices: 64534401--64534427 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64534391 TAAACAACTA
64534401 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
64534428 AAACCAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64541702 original size:31 final size:31
Alignment explanation
Indices: 64541667--64541727 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
64541657 TAAGAGTTTA
*
64541667 CTGTTTTCAGCTCACTGGAGCTTACCTTTTG
1 CTGTTTTCAGCTCACTAGAGCTTACCTTTTG
64541698 CTGTTTTCAGCTCACTAGAGCTTACCTTTT
1 CTGTTTTCAGCTCACTAGAGCTTACCTTTT
64541728 TAGCTCGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.15, C:0.26, G:0.16, T:0.43
Consensus pattern (31 bp):
CTGTTTTCAGCTCACTAGAGCTTACCTTTTG
Found at i:64541727 original size:23 final size:22
Alignment explanation
Indices: 64541701--64541790 Score: 74
Period size: 23 Copynumber: 4.0 Consensus size: 22
64541691 CCTTTTGCTG
*
64541701 TTTTCAGCTCACTAGAGCTTACC
1 TTTTCAACTCA-TAGAGCTTACC
* * *
64541724 TTTTTAGCTCGTATGAGCTTA-C
1 TTTTCAACTCATA-GAGCTTACC
*
64541746 TATTCAACTCGATAGAGCTTACC
1 TTTTCAACTC-ATAGAGCTTACC
* *
64541769 GTTTCAACTTATTAGAGCTTAC
1 TTTTCAACTCA-TAGAGCTTAC
64541791 TGTTCATCAG
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
22 18 0.33
23 36 0.67
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (22 bp):
TTTTCAACTCATAGAGCTTACC
Found at i:64552200 original size:22 final size:22
Alignment explanation
Indices: 64552159--64552235 Score: 93
Period size: 22 Copynumber: 3.5 Consensus size: 22
64552149 TTCAGCCCAC
*
64552159 TAGAGCTTACCGTTTCAGCTTGTA
1 TAGAGCTTACTG-TTCAGCTTG-A
**
64552183 TA-AGCTTACTGTTCAGCTCAA
1 TAGAGCTTACTGTTCAGCTTGA
*
64552204 TAGAGCTTACTATTCAGCTTGA
1 TAGAGCTTACTGTTCAGCTTGA
64552226 TAGAGCTTAC
1 TAGAGCTTAC
64552236 CGTTTTAGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.07
22 33 0.72
23 8 0.17
24 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (22 bp):
TAGAGCTTACTGTTCAGCTTGA
Found at i:64552209 original size:45 final size:45
Alignment explanation
Indices: 64552148--64552257 Score: 136
Period size: 45 Copynumber: 2.4 Consensus size: 45
64552138 AGTTCACTGT
* *
64552148 TTTCAGCCCACTAGAGCTTACCGT-TTCAGCTTGTATA-AGCTTACTG
1 TTTCAGCTCACTAGAGCTTA-C-TATTCAGCTTG-ATAGAGCTTACCG
*
64552194 -TTCAGCTCAATAGAGCTTACTATTCAGCTTGATAGAGCTTACCG
1 TTTCAGCTCACTAGAGCTTACTATTCAGCTTGATAGAGCTTACCG
*
64552238 TTTTAGCTCACTAGAGCTTA
1 TTTCAGCTCACTAGAGCTTA
64552258 TTGTTCATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
43 4 0.07
44 18 0.32
45 34 0.61
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (45 bp):
TTTCAGCTCACTAGAGCTTACTATTCAGCTTGATAGAGCTTACCG
Found at i:64565457 original size:29 final size:29
Alignment explanation
Indices: 64565423--64565554 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
64565413 TACTCGATTT
** * *
64565423 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
64565452 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
64565481 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64565510 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64565539 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64565555 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64579656 original size:18 final size:18
Alignment explanation
Indices: 64579611--64579648 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
64579601 CGTACATGAG
* *
64579611 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAGAA
64579629 AGAAAAAAAAAAAAAGAA
1 AGAAAAAAAAAAAAAGAA
64579647 AG
1 AG
64579649 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAGAA
Found at i:64580946 original size:40 final size:40
Alignment explanation
Indices: 64580887--64580993 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
64580877 CAATTGAATG
* * * *
64580887 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
64580927 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
64580967 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
64580994 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:64581013 original size:40 final size:39
Alignment explanation
Indices: 64580928--64581054 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
64580918 CTGGAAATTA
* * *
64580928 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
64580966 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
64581008 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
64581048 TATCCGG
1 TATCCGG
64581055 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:64587703 original size:18 final size:18
Alignment explanation
Indices: 64587658--64587695 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
64587648 CGTACATGAG
* *
64587658 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAGAA
64587676 AGAAAAAAAAAAAAAGAA
1 AGAAAAAAAAAAAAAGAA
64587694 AG
1 AG
64587696 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAGAA
Found at i:64588974 original size:40 final size:40
Alignment explanation
Indices: 64588915--64589021 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
64588905 CAATTGAATG
* * * *
64588915 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
64588955 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
64588995 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
64589022 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:64589041 original size:40 final size:39
Alignment explanation
Indices: 64588956--64589082 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
64588946 CTGGAAATTA
* * *
64588956 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
64588994 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
64589036 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
64589076 TATCCGG
1 TATCCGG
64589083 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:64590925 original size:34 final size:33
Alignment explanation
Indices: 64590872--64590966 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 33
64590862 ATGCATTGTG
64590872 GATACTGTACTGAAATGGGCTAAGGCCCACACT
1 GATACTGTACTGAAATGGGCTAAGGCCCACACT
* * *
64590905 GATACTGTTACTGTATTGGGCTAAGGCCCATACT
1 GATACTG-TACTGAAATGGGCTAAGGCCCACACT
* * * *
64590939 GATATTGCGACTGATATGGGCTTAGGCC
1 GATACTG-TACTGAAATGGGCTAAGGCC
64590967 TAGACTGTTC
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 7 0.14
34 44 0.86
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (33 bp):
GATACTGTACTGAAATGGGCTAAGGCCCACACT
Found at i:64592888 original size:27 final size:27
Alignment explanation
Indices: 64592869--64593213 Score: 519
Period size: 27 Copynumber: 12.8 Consensus size: 27
64592859 ATTACCAAAG
64592869 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64592896 TGCCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
64592923 TACCATCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
64592950 TACCCTTGATTTACAGAATTACTGGTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64592977 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
64593004 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
64593031 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
64593058 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64593085 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64593112 TACCCTCGATTTACAGAATTACCTTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
64593139 TACCCTCAATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64593166 TACCCTCGATTTACAGAATAACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64593193 TACCCTCAATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
64593214 TTAAATACCC
Statistics
Matches: 286, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 286 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:64593238 original size:26 final size:27
Alignment explanation
Indices: 64593216--64593506 Score: 326
Period size: 27 Copynumber: 10.9 Consensus size: 27
64593206 CAAAATTATT
*
64593216 AAATACCCCTATAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
64593243 AGATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
* **
64593270 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
64593297 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
64593324 AAATACCTC-GTAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
64593350 AAATACCCATGTAGGGTAGAATTTCTG
1 AAATACCCCTGTAGGGTAGAATTACTG
64593377 AAATA-CCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
64593403 AAATGCCCC-GTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
64593429 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
64593456 AAATACCCCTATAGGGTA-AATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* * * *
64593482 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
64593507 CATTTTGCCC
Statistics
Matches: 225, Mismatches: 30, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
26 87 0.39
27 136 0.60
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:64593266 original size:53 final size:54
Alignment explanation
Indices: 64593216--64593507 Score: 351
Period size: 53 Copynumber: 5.5 Consensus size: 54
64593206 CAAAATTATT
* * * *
64593216 AAATACCCCTATAGGGTAGAATTATCGAGATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* * * *
64593270 AAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* * * *
64593324 AAATACCTC-GTAGGGTAGAATTATCGAAATACCCATGTAGGGTAGAATTTCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* *
64593377 AAATA-CCCTGTAGGGTAGAATTACTGAAATGCCCC-GTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* * *
64593429 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTA-AATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT-G
* * * *
64593482 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
64593508 ATTTTGCCCC
Statistics
Matches: 203, Mismatches: 31, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
52 24 0.12
53 119 0.59
54 60 0.30
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
Found at i:64593781 original size:27 final size:26
Alignment explanation
Indices: 64593706--64593781 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
64593696 CGGAGGAAGC
*
64593706 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
64593733 GTTATGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
64593759 GTATCTGGTGACTCTGTCACAAT
1 GT-TCTGGTGGCTCTGCCACAAT
64593782 GTTTGTTGAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 9 0.21
27 34 0.79
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:64594265 original size:6 final size:6
Alignment explanation
Indices: 64594256--64594412 Score: 119
Period size: 6 Copynumber: 25.8 Consensus size: 6
64594246 TTGCATTCAT
* * *
64594256 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTTTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
64594305 -TTATTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTTTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
64594354 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTA ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
64594402 ATTCTG ATTCT
1 ATTCTG ATTCT
64594413 CATTTTGGTT
Statistics
Matches: 119, Mismatches: 18, Indels: 28
0.72 0.11 0.17
Matches are distributed among these distances:
5 9 0.08
6 98 0.82
7 9 0.08
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:64594317 original size:30 final size:30
Alignment explanation
Indices: 64594256--64594412 Score: 202
Period size: 30 Copynumber: 5.4 Consensus size: 30
64594246 TTGCATTCAT
*
64594256 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
64594287 ATTTTGATTCTGATTCTG-T--T-A-T-TG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
64594311 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
64594342 ATTCTGATTTTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
64594372 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
64594402 ATTCTGATTCT
1 ATTCTGATTCT
64594413 CATTTTGGTT
Statistics
Matches: 110, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
24 19 0.17
25 1 0.01
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.02
30 46 0.42
31 39 0.35
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:64594351 original size:61 final size:61
Alignment explanation
Indices: 64594256--64594410 Score: 234
Period size: 55 Copynumber: 2.7 Consensus size: 61
64594246 TTGCATTCAT
* *
64594256 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTTTGATTCTGATTCTG----T--TATTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTGATTCTGTTACTAATATTG
64594311 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTGATTCTGTTACTAATATTG
*
64594372 ATTCTGATTCTGATTCTGTTA-CTAATTCTGATTCTGATT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT
64594411 CTCATTTTGG
Statistics
Matches: 91, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
55 47 0.52
59 1 0.01
60 18 0.20
61 25 0.27
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (61 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTGATTCTGTTACTAATATTG
Found at i:64594429 original size:30 final size:30
Alignment explanation
Indices: 64594256--64594433 Score: 192
Period size: 30 Copynumber: 6.1 Consensus size: 30
64594246 TTGCATTCAT
*
64594256 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
64594287 ATTTTGATTCTGATTCTGTT----A-T-TG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
64594311 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
* *
64594342 ATTCTGATTTTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
*
64594372 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
64594402 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
64594432 AT
1 AT
64594434 AATGTTTCTT
Statistics
Matches: 126, Mismatches: 11, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
24 20 0.16
25 1 0.01
26 1 0.01
29 2 0.02
30 58 0.46
31 44 0.35
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:64596425 original size:27 final size:27
Alignment explanation
Indices: 64596406--64596912 Score: 685
Period size: 27 Copynumber: 18.8 Consensus size: 27
64596396 ATTACCAAAG
*
64596406 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64596433 TGCCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
64596460 TACCATCGATTTATC-GAATTATTGTTT
1 TACCCTCGATTTA-CAGAATTACCGTTT
* * *
64596487 TACCCTTGATTTACAGAATTACTGGTT
1 TACCCTCGATTTACAGAATTACCGTTT
64596514 TACCCTCGATTTACA-ATATTACCGTTT
1 TACCCTCGATTTACAGA-ATTACCGTTT
* *
64596541 TATCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596568 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
64596595 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596622 TACCCTCGATTTAAAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596649 TACCCTCAATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64596676 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596703 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64596730 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
64596757 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
64596784 TACCCTCGATTTACAGAATTGTCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596811 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596838 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596865 TACCCTCGATTTACAGAATAACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
64596892 TACCCTCAATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
64596913 TTAAATACCC
Statistics
Matches: 432, Mismatches: 44, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.00
27 428 0.99
28 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:64596955 original size:27 final size:27
Alignment explanation
Indices: 64596915--64597206 Score: 308
Period size: 27 Copynumber: 10.9 Consensus size: 27
64596905 CAAAATTATT
*
64596915 AAATA-CCCTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* *
64596941 AGATACCCCTGTAGGGTAGAATTA-CTA
1 AAATACCCCTGTAGGGTAGAATTATC-G
* * *
64596968 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTATCG
* *
64596995 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* *
64597022 AAATACCTCGGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
*
64597049 AAATACCCATGTAGGGTAGAATT-TCTG
1 AAATACCCCTGTAGGGTAGAATTATC-G
64597076 AAATA-CCCTGTAGGGTAGAATTA-CTG
1 AAATACCCCTGTAGGGTAGAATTATC-G
* *
64597102 AAATGCCCCGGTAGGGTAGAATTA-CTG
1 AAATACCCCTGTAGGGTAGAATTATC-G
* * *
64597129 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* *
64597156 AAATACCCCTATAGGGTAAAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* * * *
64597183 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
64597207 CCATTTTGCC
Statistics
Matches: 228, Mismatches: 31, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
26 30 0.13
27 196 0.86
28 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTATCG
Found at i:64596988 original size:54 final size:54
Alignment explanation
Indices: 64596915--64597208 Score: 362
Period size: 54 Copynumber: 5.5 Consensus size: 54
64596905 CAAAATTATT
* * * *
64596915 AAATACCC-TATAGGGTAGAATTATCGAGATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* * *
64596968 AAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* * * *
64597022 AAATA-CCTCGGTAGGGTAGAATTATCGAAATACCCATGTAGGGTAGAATTTCTG
1 AAATACCCT-TGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* * *
64597076 AAATACCC-TGTAGGGTAGAATTACTGAAATGCCCCGGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* * *
64597129 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAAAATTA-TCG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT-G
* * *
64597183 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
64597209 ATTTTGCCCC
Statistics
Matches: 205, Mismatches: 31, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
53 58 0.28
54 145 0.71
55 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
Found at i:64597116 original size:134 final size:134
Alignment explanation
Indices: 64596906--64597206 Score: 383
Period size: 134 Copynumber: 2.2 Consensus size: 134
64596896 CTCAATTTAC
* * *
64596906 AAAATTAT-TAAATACCCTATAGGGTAGAATTATCGAGATACCCCTGTAGGGTAGAATTACTAAA
1 AAAATTATCGAAATACCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTAAA
** * * *
64596970 ATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCTCGGTA
66 ATACCCCGGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAAATACCGAAATACCCCGATA
64597035 GGGT
131 GGGT
* *
64597039 AGAATTATCGAAATACCCATGTAGGGTAGAATT-TCTGAAATA-CCCTGTAGGGTAGAATTACTG
1 AAAATTATCGAAATACCC-TGTAGGGTAGAATTATC-GAAATACCCCTGTAGGGTAGAATTACTA
* ** * * *
64597102 AAATGCCCCGGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTA
64 AAATACCCCGGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAAATACCGAAATACCCCGA
64597167 TAGGGT
129 TAGGGT
* * *
64597173 AAAATTATCGAGATACCCTTGTGGGGTAAAATTA
1 AAAATTATCGAAATACCC-TGTAGGGTAGAATTA
64597207 CCATTTTGCC
Statistics
Matches: 143, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
133 7 0.05
134 118 0.83
135 18 0.13
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (134 bp):
AAAATTATCGAAATACCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTAAA
ATACCCCGGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAAATACCGAAATACCCCGATA
GGGT
Found at i:64597482 original size:27 final size:26
Alignment explanation
Indices: 64597407--64597482 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
64597397 CGGAGGAAGC
*
64597407 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
64597434 GTTATGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
64597460 GTATCTGGTGACTCTGTCACAAT
1 GT-TCTGGTGGCTCTGCCACAAT
64597483 GTTTGTTGAC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 9 0.21
27 34 0.79
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:64597966 original size:6 final size:6
Alignment explanation
Indices: 64597957--64598113 Score: 137
Period size: 6 Copynumber: 25.8 Consensus size: 6
64597947 TTGCATTCAT
* *
64597957 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
64598006 -TTACTG ATTCTG ATTTTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTA
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
64598055 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCT- ATTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
64598103 ATTCTG ATTCT
1 ATTCTG ATTCT
64598114 CATTTTGGTT
Statistics
Matches: 123, Mismatches: 14, Indels: 28
0.75 0.08 0.17
Matches are distributed among these distances:
5 10 0.08
6 100 0.81
7 10 0.08
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:64598041 original size:55 final size:55
Alignment explanation
Indices: 64597957--64598113 Score: 223
Period size: 55 Copynumber: 2.9 Consensus size: 55
64597947 TTGCATTCAT
*
64597957 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTA
* *
64598012 ATTCTGATTTTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTA
*
64598067 ATAT-TGATTCTGATTCTG--ATTCT-ATTACTGATTCTGATTCTGATTCT
1 AT-TCTGATTCTGATTCTGTCA-CCTAATT-CTGATTCTGATTCTGATTCT
64598114 CATTTTGGTT
Statistics
Matches: 93, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
53 4 0.04
54 21 0.23
55 67 0.72
56 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (55 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTA
Found at i:64598134 original size:30 final size:30
Alignment explanation
Indices: 64597957--64598113 Score: 157
Period size: 30 Copynumber: 5.4 Consensus size: 30
64597947 TTGCATTCAT
* *
64597957 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTTA-CTAATTCTG
*
64597988 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTAATTCTGTTACTAATTCTG
* * *
64598012 ATTCTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTTA-CTAATTCTG
64598043 ATTCTGATTCTAATTCTGTTACTAATAT-TG
1 ATTCTGATTCTAATTCTGTTACTAAT-TCTG
* * *
64598073 ATTCTGATTCTGATTCTATTACTGATTCTG
1 ATTCTGATTCTAATTCTGTTACTAATTCTG
64598103 ATTCTGATTCT
1 ATTCTGATTCT
64598114 CATTTTGGTT
Statistics
Matches: 108, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
24 20 0.19
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.02
30 43 0.40
31 40 0.37
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTAATTCTGTTACTAATTCTG
Found at i:64600900 original size:31 final size:31
Alignment explanation
Indices: 64600865--64600925 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
64600855 GTGATAAAAA
64600865 AAGCAACTTTGAACGCATTTGCAGAGAAAGG
1 AAGCAACTTTGAACGCATTTGCAGAGAAAGG
64600896 AAGCAACTTTGAACGCATTTGCAGAGAAAG
1 AAGCAACTTTGAACGCATTTGCAGAGAAAG
64600926 TGTGAAGGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (31 bp):
AAGCAACTTTGAACGCATTTGCAGAGAAAGG
Found at i:64609988 original size:27 final size:26
Alignment explanation
Indices: 64609932--64609988 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
64609922 CAACCTTAAC
* * *
64609932 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
64609958 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
64609985 CCTA
1 CCTA
64609989 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:64611103 original size:37 final size:34
Alignment explanation
Indices: 64611035--64611106 Score: 90
Period size: 37 Copynumber: 2.0 Consensus size: 34
64611025 TCGGCTATGG
*
64611035 AGAAAAGAAGAGGAGAAGGTAGATGGAAAGAAAA
1 AGAAAAGAAGAGGAGAAGGAAGATGGAAAGAAAA
* *
64611069 AGAAAAGAAAGGAGGAGGAGGAAAGATGGTAAGAAAA
1 AGAAAAG-AA-GAGGAGAAGG-AAGATGGAAAGAAAA
64611106 A
1 A
64611107 ATGGCACACT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 7 0.22
35 2 0.06
36 9 0.28
37 14 0.44
ACGTcount: A:0.58, C:0.00, G:0.36, T:0.06
Consensus pattern (34 bp):
AGAAAAGAAGAGGAGAAGGAAGATGGAAAGAAAA
Found at i:64615101 original size:40 final size:40
Alignment explanation
Indices: 64615056--64615223 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
64615046 CGGAATATAA
64615056 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64615096 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
64615136 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
64615176 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
64615216 CCGGATAT
1 CCGGATAT
64615224 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64619548 original size:66 final size:68
Alignment explanation
Indices: 64619472--64619658 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64619462 TAGTACCACT
*
64619472 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64619534 CACG
65 CACG
64619538 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64619603 ATCACG
63 ATCACG
64619609 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64619659 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64619583 original size:71 final size:71
Alignment explanation
Indices: 64619495--64619658 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64619485 CGATTTGTCT
64619495 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64619560 CTTTCA
66 CTTTCA
64619566 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64619631 CTTTCA
66 CTTTCA
64619637 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64619659 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64619696 original size:71 final size:70
Alignment explanation
Indices: 64619495--64619692 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64619485 CGATTTGTCT
* * *
64619495 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64619560 CTTTCA
65 CTTTCA
* * *
64619566 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64619631 CTTTCA
65 CTTTCA
* *
64619637 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64619693 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64627116 original size:66 final size:68
Alignment explanation
Indices: 64627040--64627226 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64627030 TAGTACCACT
*
64627040 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64627102 CACG
65 CACG
64627106 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64627171 ATCACG
63 ATCACG
64627177 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64627227 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64627151 original size:71 final size:71
Alignment explanation
Indices: 64627063--64627226 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64627053 CGATTTGTCT
64627063 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64627128 CTTTCA
66 CTTTCA
64627134 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64627199 CTTTCA
66 CTTTCA
64627205 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64627227 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64627264 original size:71 final size:70
Alignment explanation
Indices: 64627063--64627260 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64627053 CGATTTGTCT
* * *
64627063 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64627128 CTTTCA
65 CTTTCA
* * *
64627134 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64627199 CTTTCA
65 CTTTCA
* *
64627205 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64627261 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64633439 original size:40 final size:40
Alignment explanation
Indices: 64633394--64633561 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
64633384 CGGAATATAA
64633394 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64633434 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
64633474 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
64633514 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
64633554 CCGGATAT
1 CCGGATAT
64633562 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64642338 original size:29 final size:29
Alignment explanation
Indices: 64642305--64642375 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
64642295 GTGACGAGAT
64642305 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
64642334 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
64642363 TGGCACTAAGTGT
1 TGGCACTAAGTGT
64642376 ACGAGCTCGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:64643990 original size:12 final size:12
Alignment explanation
Indices: 64643973--64643999 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64643963 AAAAATAGTC
64643973 TAAGAACAAAAA
1 TAAGAACAAAAA
64643985 TAAGAACAAAAA
1 TAAGAACAAAAA
64643997 TAA
1 TAA
64644000 AGTAAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.74, C:0.07, G:0.07, T:0.11
Consensus pattern (12 bp):
TAAGAACAAAAA
Found at i:64658329 original size:49 final size:49
Alignment explanation
Indices: 64658257--64658444 Score: 259
Period size: 49 Copynumber: 3.8 Consensus size: 49
64658247 TGAGGTCACG
*
64658257 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
64658306 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
**
64658357 TGCATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
64658406 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
64658445 GCCTTGTCTA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 76 0.64
50 4 0.03
51 39 0.33
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:64658425 original size:100 final size:100
Alignment explanation
Indices: 64658252--64658444 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
64658242 TATTGTGAGG
** *
64658252 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGCATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
64658317 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
64658352 TCACGTGCATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGCATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
64658417 AAGTGCAGGCTACTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
64658445 GCCTTGTCTA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACGTGCATAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:64668533 original size:51 final size:51
Alignment explanation
Indices: 64668461--64668705 Score: 333
Period size: 49 Copynumber: 5.1 Consensus size: 51
64668451 GTACATAATA
64668461 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
* *
64668512 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTG-AAA-GTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
*
64668561 ATATATGTG---A----TAA-GGCC--TGTGATGAATGTG-AAA-GTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
64668600 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG--TAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
* *
64668649 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
64668700 ATATAT
1 ATATAT
64668706 ATGTGGTAAA
Statistics
Matches: 175, Mismatches: 5, Indels: 28
0.84 0.02 0.13
Matches are distributed among these distances:
39 30 0.17
41 4 0.02
42 4 0.02
46 4 0.02
47 4 0.02
49 74 0.42
50 6 0.03
51 49 0.28
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (51 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
Found at i:64668583 original size:39 final size:39
Alignment explanation
Indices: 64668540--64668617 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
64668530 AATGGCCGAC
64668540 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64668579 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64668618 AATGGCCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (39 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
Found at i:64668623 original size:88 final size:90
Alignment explanation
Indices: 64668488--64668666 Score: 317
Period size: 88 Copynumber: 2.0 Consensus size: 90
64668478 TAATGGCCGA
64668488 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
1 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
*
64668553 AAGTGTATATATATGTGATAAGGCC
66 AAATGTATATATATGTGATAAGGCC
* *
64668578 TGTGATGAATGTG-AAA-GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
64668641 AAATGTATATATATGTGATAAGGCC
66 AAATGTATATATATGTGATAAGGCC
64668666 T
1 T
64668667 AATGGCCGAC
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
88 70 0.81
89 3 0.03
90 13 0.15
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (90 bp):
TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
AAATGTATATATATGTGATAAGGCC
Found at i:64671996 original size:40 final size:40
Alignment explanation
Indices: 64671888--64671997 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
64671878 ATTGAATGAT
* * * * *
64671888 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
64671928 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
64671968 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
64671998 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:64673477 original size:43 final size:43
Alignment explanation
Indices: 64673418--64673503 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
64673408 TGTTAACCCC
* *
64673418 TCGTGTCCGACACCGGC-GATGGTCTCGGGT-TCGGGGTGTTACA
1 TCGTGTCCGACACCGGCAG-CGGACTCGGGTAT-GGGGTGTTACA
* *
64673461 TCGTTTCCGACTCCGGCAGCGGACTCGGGTATGGGGTGTTACA
1 TCGTGTCCGACACCGGCAGCGGACTCGGGTATGGGGTGTTACA
64673504 GTGTACCCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 35 0.95
44 2 0.05
ACGTcount: A:0.13, C:0.26, G:0.36, T:0.26
Consensus pattern (43 bp):
TCGTGTCCGACACCGGCAGCGGACTCGGGTATGGGGTGTTACA
Found at i:64679358 original size:8 final size:8
Alignment explanation
Indices: 64679345--64679375 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
64679335 AATACCGATT
64679345 TTTCGGCA
1 TTTCGGCA
64679353 TTTCGGCA
1 TTTCGGCA
64679361 TTTCGGCA
1 TTTCGGCA
64679369 TTTCGGC
1 TTTCGGC
64679376 TTTTGCCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.10, C:0.26, G:0.26, T:0.39
Consensus pattern (8 bp):
TTTCGGCA
Found at i:64699500 original size:30 final size:30
Alignment explanation
Indices: 64699466--64699526 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64699456 TCCTTAACTC
64699466 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
64699496 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
64699526 A
1 A
64699527 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:64703947 original size:29 final size:30
Alignment explanation
Indices: 64703914--64703973 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
64703904 TCCTTAACTC
64703914 AAACTTTGGAAAAATTACA-TTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
64703943 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
64703973 A
1 A
64703974 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:64716019 original size:21 final size:19
Alignment explanation
Indices: 64715979--64716025 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 19
64715969 TTTTTAACAC
64715979 AATTTAATTATTTTATAAT
1 AATTTAATTATTTTATAAT
64715998 -ATTTAATTATTTTTTGATAAT
1 AATTTAATTA--TTTT-ATAAT
64716019 AATTTAA
1 AATTTAA
64716026 CCAGATTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 9 0.38
20 4 0.17
21 5 0.21
22 6 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
AATTTAATTATTTTATAAT
Found at i:64719466 original size:47 final size:48
Alignment explanation
Indices: 64719397--64719519 Score: 128
Period size: 47 Copynumber: 2.6 Consensus size: 48
64719387 GGTAAAGTGC
* * * *
64719397 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCA-CATC-TCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTTCAAGG
* * **
64719444 CGATGCCATGTCCCAAACATGGTTTTGCACTGACTATCATCTTGTAGG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTTCAAGG
*
64719492 CGATG-CATGTCCCATACAT-GTCTTACAC
1 CGATGCCATGTCCCAAACATGGTCTTACAC
64719520 ACATGACTTA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 8 0.13
47 47 0.75
48 8 0.13
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTTCAAGG
Found at i:64719577 original size:46 final size:47
Alignment explanation
Indices: 64719520--64719631 Score: 138
Period size: 46 Copynumber: 2.4 Consensus size: 47
64719510 TGTCTTACAC
* * *
64719520 ACATGACTTACACTGGCATAT-GTCTCGAGGCCGATG-CATGTCCTAG
1 ACATGTCTTACACTGGC-TATCGTCTCAAGGCCGATGCCATGTCCCAG
* * *
64719566 ACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAG
1 ACATGTCTTACACTGGCTATCGTCTCAAGGCCGATGCCATGTCCCAG
64719613 ACATGGTCTTACACTGGCT
1 ACAT-GTCTTACACTGGCT
64719632 GTCATAATGT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
45 2 0.04
46 28 0.50
47 13 0.23
48 13 0.23
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
ACATGTCTTACACTGGCTATCGTCTCAAGGCCGATGCCATGTCCCAG
Found at i:64720060 original size:30 final size:30
Alignment explanation
Indices: 64720026--64720129 Score: 208
Period size: 30 Copynumber: 3.5 Consensus size: 30
64720016 CATCTTCGAT
64720026 AAAATGACCATTTTGCCCCTAGACTTTGGC
1 AAAATGACCATTTTGCCCCTAGACTTTGGC
64720056 AAAATGACCATTTTGCCCCTAGACTTTGGC
1 AAAATGACCATTTTGCCCCTAGACTTTGGC
64720086 AAAATGACCATTTTGCCCCTAGACTTTGGC
1 AAAATGACCATTTTGCCCCTAGACTTTGGC
64720116 AAAATGACCATTTT
1 AAAATGACCATTTT
64720130 ACCCTATACT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 74 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCCTAGACTTTGGC
Found at i:64723526 original size:19 final size:19
Alignment explanation
Indices: 64723502--64723567 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
64723492 CATACAAGCA
*
64723502 GAAGTGCATCATGGCACAT
1 GAAGTGCATCATGGCACAC
**
64723521 GAAGTGCAT-ATTGATACAC
1 GAAGTGCATCA-TGGCACAC
*
64723540 GAAGTGCATCCTGGCACAC
1 GAAGTGCATCATGGCACAC
*
64723559 GAAATGCAT
1 GAAGTGCAT
64723568 AAACCCATAC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
18 1 0.03
19 37 0.97
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (19 bp):
GAAGTGCATCATGGCACAC
Found at i:64724304 original size:136 final size:136
Alignment explanation
Indices: 64724061--64724357 Score: 393
Period size: 136 Copynumber: 2.2 Consensus size: 136
64724051 AATCAAACAT
* ** * * * *
64724061 ATTTTTCATTTTATTCAGCTGAGTCCCTATACTCAGATACACATATCTTTTTGTATTCAACACTG
1 ATTTTTCAATTTATTCAATTTAGTCACTATACTCAGACACACATATCTTTTTATATTCAACACTG
* * * * **
64724126 GATAAAAATTTAATTTTACATTCTTTCGTTAGGGACCCTATACTTTTCATCTACAACATAATCTC
66 AATAAAAATCTAATTTCACATTCTTTCATTAGGGACAATATACTTTTCATCTACAACATAATCTC
64724191 ATGG-A
131 ATGGCA
*
64724196 ATTTTTCAATTTATTCAATTTAGTCATTATACTCAGGACACACATATCTTTTTATATTCAACA-T
1 ATTTTTCAATTTATTCAATTTAGTCACTATACTCA-GACACACATATCTTTTTATATTCAACACT
*
64724260 CGAATTAAAATCTAATTTCACATTCTTTCATTA-GGAGCAATATACTTTTCATCTACAACATAAT
65 -GAATAAAAATCTAATTTCACATTCTTTCATTAGGGA-CAATATACTTTTCATCTACAACATAAT
64724324 CTCATGGCA
128 CTCATGGCA
* *
64724333 TTTTTTTAATTTATTCAATTTAGTC
1 ATTTTTCAATTTATTCAATTTAGTC
64724358 CTTAATGTTG
Statistics
Matches: 141, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
135 33 0.23
136 84 0.60
137 24 0.17
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (136 bp):
ATTTTTCAATTTATTCAATTTAGTCACTATACTCAGACACACATATCTTTTTATATTCAACACTG
AATAAAAATCTAATTTCACATTCTTTCATTAGGGACAATATACTTTTCATCTACAACATAATCTC
ATGGCA
Found at i:64726591 original size:40 final size:40
Alignment explanation
Indices: 64726546--64726713 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
64726536 CGGAATATAA
64726546 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
64726586 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64726626 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
64726666 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
64726706 CCGGATAT
1 CCGGATAT
64726714 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64726696 original size:80 final size:80
Alignment explanation
Indices: 64726562--64726711 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
64726552 ATAATCACGT
*
64726562 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
64726626 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
64726642 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
64726705 CCCGGAT
64 CCCGGAT
64726712 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:64734593 original size:40 final size:40
Alignment explanation
Indices: 64734548--64734714 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
64734538 CGGAATATAA
64734548 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
64734588 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64734627 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
64734667 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
64734707 CCGGATAT
1 CCGGATAT
64734715 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.30
40 71 0.68
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64734612 original size:39 final size:40
Alignment explanation
Indices: 64734564--64734673 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
64734554 ATAATCACGT
* *
64734564 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-A-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
64734603 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
64734643 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
64734674 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.02
39 32 0.52
40 29 0.47
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (40 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
Found at i:64737895 original size:40 final size:40
Alignment explanation
Indices: 64737794--64738013 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
64737784 AACCCAAGTA
* *
64737794 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
64737833 CCTTC-GGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
64737872 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
64737911 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
64737951 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
64737991 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
64738014 CATTCGAATA
Statistics
Matches: 169, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 6 0.04
39 66 0.39
40 97 0.57
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:64737936 original size:79 final size:80
Alignment explanation
Indices: 64737794--64738013 Score: 358
Period size: 79 Copynumber: 2.8 Consensus size: 80
64737784 AACCCAAGTA
* * *
64737794 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC-GGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
64737856 GTCAATAGCACAAAAG
65 GTCAATAGCACAAAAG
64737872 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
64737936 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
*
64737951 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
64738014 CATTCGAATA
Statistics
Matches: 133, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
78 23 0.17
79 81 0.61
80 29 0.22
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:64740308 original size:36 final size:35
Alignment explanation
Indices: 64740257--64740327 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 35
64740247 AACTTTAAGA
64740257 AACATTTGTCTCCCACCTGATACTCAATATCTCTT
1 AACATTTGTCTCCCACCTGATACTCAATATCTCTT
64740292 AACACTTTGTCTCCCACCTGATACTCAATATCTCTT
1 AACA-TTTGTCTCCCACCTGATACTCAATATCTCTT
64740328 GTTTTAAATC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 4 0.11
36 31 0.89
ACGTcount: A:0.25, C:0.32, G:0.06, T:0.37
Consensus pattern (35 bp):
AACATTTGTCTCCCACCTGATACTCAATATCTCTT
Found at i:64755765 original size:27 final size:26
Alignment explanation
Indices: 64755730--64755841 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
64755720 AGCATGGTTG
*
64755730 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
64755756 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
*
64755784 CCAGAACAGAAATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
64755811 TCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
64755838 CCAG
1 CCAG
64755842 GATGATTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.68
28 17 0.24
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:64755822 original size:54 final size:54
Alignment explanation
Indices: 64755730--64755841 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
64755720 AGCATGGTTG
* *
64755730 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
64755784 CCAGAACAGAAATATGTGACAGAGCCATCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
64755838 CCAG
1 CCAG
64755842 GATGATTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:64759236 original size:20 final size:20
Alignment explanation
Indices: 64759207--64759251 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
64759197 AGCACATGTA
* *
64759207 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
64759227 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
64759247 TTCAT
1 TTCAT
64759252 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:64760711 original size:19 final size:19
Alignment explanation
Indices: 64760687--64760725 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
64760677 TTAGGGTTAC
64760687 AACCCGAGAAGCAAATATA
1 AACCCGAGAAGCAAATATA
64760706 AACCCGAGAAGCAAATATA
1 AACCCGAGAAGCAAATATA
64760725 A
1 A
64760726 GCGATATCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.21, G:0.15, T:0.10
Consensus pattern (19 bp):
AACCCGAGAAGCAAATATA
Found at i:64783327 original size:27 final size:26
Alignment explanation
Indices: 64783283--64783333 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
64783273 CTCGTTGCAA
*
64783283 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64783310 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
64783334 AGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:64783415 original size:27 final size:26
Alignment explanation
Indices: 64783377--64783436 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
64783367 ATATATATAT
* *
64783377 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
64783403 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
64783430 ATATCTG
1 ATATCTG
64783437 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:64786940 original size:40 final size:40
Alignment explanation
Indices: 64786806--64786944 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
64786796 ACATTCAAAT
* * * * * *
64786806 GCCTTCGGGACATAGCCCGG-TTACAGAAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAGCTTGCACGAAA
* * *
64786846 GCCTTCGGGACTCAACCCGGATTTAGTAGCTTGCTCGAAA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAGCTTGCACGAAA
*
64786886 GCCTTC-GGATCTTAGTCCGGATTTAGTCA-CTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATTTAGT-AGCTT-GCACGAAA
64786926 GCCTTCGGGACTTAGCCCG
1 GCCTTCGGGACTTAGCCCG
64786945 TATATCATTT
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
39 3 0.04
40 68 0.85
41 9 0.11
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAGCTTGCACGAAA
Found at i:64796883 original size:48 final size:48
Alignment explanation
Indices: 64796805--64797229 Score: 351
Period size: 48 Copynumber: 8.9 Consensus size: 48
64796795 ACCGTTCTAA
* * *
64796805 ATGTGCCT-GTGTAAGACCATGTCTGAGACATTGCATTGGTGATTATAT
1 ATGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
* * *
64796853 ATGTGCTAGTGTAATACCATGT-TAGGGACATGGAATCGATGATTATAT
1 ATGTGCTAGTGTAAGACCATGTCT-GGGACATGGCATCGGTGATTATAT
** *
64796901 ATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAT
1 ATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
* * **** *
64796949 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGTATCAACAATGATAT
1 ATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
* * * * * *
64796997 GTGTGCCT-GTGTAAGACTATGTCTGGGAAATGGCATCAGCGATGATAT
1 ATGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
* * * *
64797045 ATGTGCCT-GTGTAATACCATGTCTGGGACATGGCATCAGCGATGATAT
1 ATGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
* * * * * *
64797093 GTGTGCCT-GTGTAAGACAATGTCTAGGACACGGCATCGGCGATGATAT
1 ATGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
* * * * * *
64797141 GTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCGATGATAT
1 ATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
* * * * *
64797189 GTG-GATTAATGTAATACCATGTC-GGGAACATGGCATTGGTG
1 ATGTG-CTAGTGTAAGACCATGTCTGGG-ACATGGCATCGGTG
64797230 CTTTAATTGG
Statistics
Matches: 327, Mismatches: 43, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
47 7 0.02
48 318 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATTATAT
Found at i:64797065 original size:144 final size:144
Alignment explanation
Indices: 64796849--64797224 Score: 420
Period size: 144 Copynumber: 2.6 Consensus size: 144
64796839 ATTGGTGATT
* * * * * * *
64796849 ATATATGTGCTAGTGTAATACCATGT-TAGGGACATGGAATC-GATGATTATATATGTGCTAGTG
1 ATATGTGTGCCAGTGTAAGACCATGTCTA-GGAAATGGCATCAG-CGATGATATATGTGCTAGTG
* * * *
64796912 TAAGACCATGTCTGGGACATGGCATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGGA
64 TAATACCATGTCTGGGACATGGCATCAGCAATGATATATGTGCCAGTGTAAGACAATGTCTAGGA
* *
64796977 CATGGTATCAACAATG
129 CACGGCATCAACAATG
* * *
64796993 ATATGTGTGCCTGTGTAAGACTATGTCTGGGAAATGGCATCAGCGATGATATATGTGCCT-GTGT
1 ATATGTGTGCCAGTGTAAGACCATGTCTAGGAAATGGCATCAGCGATGATATATGTG-CTAGTGT
* * *
64797057 AATACCATGTCTGGGACATGGCATCAGCGATGATATGTGTGCCTGTGTAAGACAATGTCTAGGAC
65 AATACCATGTCTGGGACATGGCATCAGCAATGATATATGTGCCAGTGTAAGACAATGTCTAGGAC
** *
64797122 ACGGCATCGGCGATG
130 ACGGCATCAACAATG
* ** * * *
64797137 ATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCGATGATATGTG-GATTAATGT
1 ATATGTGTGCCAGTGTAAGACCATGTCTAGGAAATGGCATCAGCGATGATATATGTG-CTAGTGT
64797201 AATACCATGTC-GGGAACATGGCAT
65 AATACCATGTCTGGG-ACATGGCAT
64797225 TGGTGCTTTA
Statistics
Matches: 195, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
143 5 0.03
144 186 0.95
145 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (144 bp):
ATATGTGTGCCAGTGTAAGACCATGTCTAGGAAATGGCATCAGCGATGATATATGTGCTAGTGTA
ATACCATGTCTGGGACATGGCATCAGCAATGATATATGTGCCAGTGTAAGACAATGTCTAGGACA
CGGCATCAACAATG
Found at i:64797224 original size:96 final size:96
Alignment explanation
Indices: 64796806--64797191 Score: 481
Period size: 96 Copynumber: 4.0 Consensus size: 96
64796796 CCGTTCTAAA
* * * * * * *
64796806 TGTGCCTGTGTAAGACCATGTCTGAGACATTGCATTGGTGATTATATATGTGCTAGTGTAATACC
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGACC
* * * *
64796871 ATGT-TAGGGACATGGAATC-GATGATTATATA
66 ATGTCT-GGGACATGGCATCAG-CGATGATATG
*
64796902 TGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATGTGCCAGTGTAAGAC
1 TGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGAC
* * *
64796966 CATGTCTGGGACATGGTATCAACAATGATATG
65 CATGTCTGGGACATGGCATCAGCGATGATATG
* * * * *
64796998 TGTGCCTGTGTAAGACTATGTCTGGGAAATGGCATCAGCGATGATATATGTGCCTGTGTAATACC
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGACC
64797063 ATGTCTGGGACATGGCATCAGCGATGATATG
66 ATGTCTGGGACATGGCATCAGCGATGATATG
* * * *
64797094 TGTGCCTGTGTAAGACAATGTCTAGGACACGGCATCGGCGATGATATGTGTGCCAGTGTAAGACC
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGACC
* **
64797159 ATGTCTAGGACATGGCATTGGCGATGATATG
66 ATGTCTGGGACATGGCATCAGCGATGATATG
64797190 TG
1 TG
64797192 GATTAATGTA
Statistics
Matches: 252, Mismatches: 34, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
95 2 0.01
96 247 0.98
97 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (96 bp):
TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGACC
ATGTCTGGGACATGGCATCAGCGATGATATG
Found at i:64799872 original size:17 final size:19
Alignment explanation
Indices: 64799830--64799873 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64799820 ATGAAATTTT
*
64799830 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
64799849 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
64799867 AA-TATTA
1 AATTATTA
64799874 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:64801618 original size:14 final size:14
Alignment explanation
Indices: 64801601--64801627 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64801591 CAGTTGATTA
64801601 TAGGAGAAATCGCG
1 TAGGAGAAATCGCG
64801615 TAGGAGAAATCGC
1 TAGGAGAAATCGC
64801628 CAAGGAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.33, T:0.15
Consensus pattern (14 bp):
TAGGAGAAATCGCG
Found at i:64804206 original size:50 final size:51
Alignment explanation
Indices: 64804085--64804324 Score: 315
Period size: 51 Copynumber: 4.8 Consensus size: 51
64804075 GTAGCCAAAC
* * * * *
64804085 TATCTGGTACACATAGTAGCCTGCACTTAGTACTATACATGCGACC-AA-T
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGT
* * * *
64804134 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-T
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGT
* * * *
64804184 TATCTGATACGCGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGT
* *
64804235 TATCGGCTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGT
*
64804286 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
64804325 TGCGACCTAG
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
49 42 0.24
50 48 0.27
51 86 0.49
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (51 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGT
Found at i:64804270 original size:101 final size:100
Alignment explanation
Indices: 64804096--64804331 Score: 314
Period size: 101 Copynumber: 2.4 Consensus size: 100
64804086 ATCTGGTACA
* * *
64804096 CATAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACATAGTAGCCTGCACT
* *
64804161 TAGTACTACACACGTGACCTAA-TTATCTGATACG
66 TAGTACTACACACGTGACCGAAGTTATCGGATACG
* * * *
64804195 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATC-GGCTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGG-TACACATAGTAGCCTGC
* * *
64804259 ACTTAGTACTACACACGTGATCGAAGTTATCGGGTATG
63 ACTTAGTACTACACACGTGACCGAAGTTATCGGATACG
*
64804297 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
64804332 TAGCTACATA
Statistics
Matches: 117, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
99 29 0.25
100 5 0.04
101 44 0.38
102 39 0.33
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACATAGTAGCCTGCACT
TAGTACTACACACGTGACCGAAGTTATCGGATACG
Found at i:64804434 original size:67 final size:64
Alignment explanation
Indices: 64804320--64804477 Score: 167
Period size: 67 Copynumber: 2.4 Consensus size: 64
64804310 ACTTAGTACT
* *
64804320 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACCTAG-ATC
1 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACACCTAGCACC
* ** * *
64804383 ACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTAC-ACATGATGTGCACTTAG
1 ACACATGCGACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGT-CTACATGATGTACACCTAG
64804447 CACC
61 CACC
* *
64804451 ATACATGTGACCTAGCTACATACTATC
1 ACACATGCGACCTAGCTACATA-TATC
64804478 TGTCTCATCC
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
63 20 0.26
64 2 0.03
65 3 0.04
67 31 0.40
68 22 0.28
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (64 bp):
ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACACCTAGCACC
Found at i:64805171 original size:30 final size:30
Alignment explanation
Indices: 64805137--64805197 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
64805127 TCCTTAACTC
64805137 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
64805167 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
64805197 A
1 A
64805198 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:64807773 original size:39 final size:39
Alignment explanation
Indices: 64807730--64807989 Score: 387
Period size: 39 Copynumber: 6.7 Consensus size: 39
64807720 GCACGTGGCT
* * *
64807730 TGCGGACTTCAAGTCCGGATATATTTCGAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
64807769 TGCGGACCTCATGTCCGAATATATTCCCAGCATATAGCT
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* *
64807808 TGCGGACTTCATGTCCGGAAATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* *
64807847 TGCGGACCTCTTGTCCAGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
* *
64807886 TGTGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
64807925 TGCGGACCTCATGT-CGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
**
64807963 TGTAGACCTCATGTCCGGATATATTTC
1 TGCGGACCTCATGTCCGGATATATTTC
64807990 AAATACCATG
Statistics
Matches: 197, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
38 36 0.18
39 161 0.82
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:64815739 original size:39 final size:39
Alignment explanation
Indices: 64815679--64815939 Score: 380
Period size: 39 Copynumber: 6.7 Consensus size: 39
64815669 GTACGTGGCT
* * *
64815679 TGCGGACTTCAAGTCCGGATATATTTCGAGCATATAGCC
1 TGCGGACTTCATGTCCAGATATATTTCCAGCATATAGCC
* * *
64815718 TGTGGACCTCATGTCCAGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCAGATATATTTCCAGCATATAGCC
64815757 TGCGGACTTCATGTCC-GAATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCAG-ATATATTTCCAGCATATAGCC
* * *
64815796 TGCGTACCTCATGTCCAGATATATTTCTAGCATATAGCC
1 TGCGGACTTCATGTCCAGATATATTTCCAGCATATAGCC
64815835 TGCGGACTTCATGTCCAGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCAGATATATTTCCAGCATATAGCC
* * *
64815874 TGCAGACCTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCAGATATATTTCCAGCATATAGCC
* *
64815913 TACGGACTTCATGTCCGGATATATTTC
1 TGCGGACTTCATGTCCAGATATATTTC
64815940 AAATACCATG
Statistics
Matches: 199, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 197 0.99
40 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (39 bp):
TGCGGACTTCATGTCCAGATATATTTCCAGCATATAGCC
Found at i:64818044 original size:40 final size:40
Alignment explanation
Indices: 64818000--64818109 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
64817990 TTCACAATTT
* *
64818000 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
64818040 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
64818080 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
64818110 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:64825375 original size:51 final size:51
Alignment explanation
Indices: 64825251--64825440 Score: 276
Period size: 51 Copynumber: 3.8 Consensus size: 51
64825241 GTAGCCAAAC
* * * *
64825251 TATCTGGTACGCTTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* *
64825300 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* *
64825351 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACATGATCGAAGT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* *
64825402 TATCAGCTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
64825441 TGCGACCTAG
Statistics
Matches: 128, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
49 40 0.31
50 3 0.02
51 85 0.66
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (51 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:64825551 original size:67 final size:65
Alignment explanation
Indices: 64825436--64825594 Score: 169
Period size: 67 Copynumber: 2.4 Consensus size: 65
64825426 ACTTAGTACT
* *
64825436 ACACATGCGACCTAGCTACATATATCCCCGTAGCTCTCTTGTCTACATGGTGTACACATAG-ATC
1 ACACATGCGACCTAGCTACATATATCCCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACC
* * ** * *
64825500 ACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTAC-ACATGATGTGCACTTAG
1 ACACATGCGACCTAGCTACAT-AT-AT-CCCCGTAGCTCTCTTGT-CTACATGATGTACACATAG
64825564 CACC
62 CACC
* *
64825568 ATACATGTGACCTAGCTACATACTATC
1 ACACATGCGACCTAGCTACATA-TATC
64825595 TGTCTCATCC
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
64 20 0.26
65 2 0.03
66 2 0.03
67 31 0.40
68 22 0.29
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (65 bp):
ACACATGCGACCTAGCTACATATATCCCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACC
Found at i:64826289 original size:30 final size:30
Alignment explanation
Indices: 64826255--64826315 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
64826245 TCCTTAACTC
64826255 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
64826285 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
64826315 A
1 A
64826316 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:64829560 original size:17 final size:19
Alignment explanation
Indices: 64829518--64829561 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64829508 ATGAAATTTT
*
64829518 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
64829537 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
64829555 AA-TATTA
1 AATTATTA
64829562 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:64829644 original size:15 final size:16
Alignment explanation
Indices: 64829626--64829685 Score: 53
Period size: 15 Copynumber: 4.2 Consensus size: 16
64829616 GATATTTGAA
64829626 ATATT-TTATTATTAG
1 ATATTATTATTATTAG
64829641 ATA-TA-T-TTA-TA-
1 ATATTATTATTATTAG
* *
64829652 AAATTATTATTATTAT
1 ATATTATTATTATTAG
64829668 A-ATTATTATTATTAG
1 ATATTATTATTATTAG
64829683 ATA
1 ATA
64829686 GGAAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
11 2 0.06
12 4 0.11
13 4 0.11
14 5 0.14
15 19 0.53
16 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
ATATTATTATTATTAG
Found at i:64833708 original size:27 final size:27
Alignment explanation
Indices: 64833658--64833834 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
64833648 TTGTTAAGAC
**
64833658 CCCGATTTGTAAAACAATCAAAATACT
1 CCCGATTTGTAAAATTATCAAAATACT
* *
64833685 CACGATTTGTAAAATTATCGAAATA-T
1 CCCGATTTGTAAAATTATCAAAATACT
* **
64833711 CCCTGATTTGTGAAATTATTGAAATAC-
1 CCC-GATTTGTAAAATTATCAAAATACT
*
64833738 CCTCGATTTGTAAAATTACCAAAATAC-
1 CC-CGATTTGTAAAATTATCAAAATACT
* * *
64833765 CCCTGATTTGTGAAATTACCGAAATA-T
1 CCC-GATTTGTAAAATTATCAAAATACT
* *
64833792 CCCTAATTTGTAAAATTATCAAAATACG
1 CCC-GATTTGTAAAATTATCAAAATACT
*
64833820 CTCGATTTGTAAAAT
1 CCCGATTTGTAAAAT
64833835 AACCGTAATA
Statistics
Matches: 124, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 4 0.03
27 117 0.94
28 3 0.02
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (27 bp):
CCCGATTTGTAAAATTATCAAAATACT
Found at i:64833745 original size:54 final size:53
Alignment explanation
Indices: 64833678--64833847 Score: 198
Period size: 54 Copynumber: 3.2 Consensus size: 53
64833668 AAAACAATCA
* * * **
64833678 AAATACTCACGATTTGTAAAATTATCGAAATATCCCTGATTTGTGAAATTATTG
1 AAATACCCTCGATTTGTAAAATTATCAAAATA-CCCTGATTTGTGAAATTACCG
*
64833732 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCAAAATA-CCCTGATTTGTGAAATTACCG
* * * *
64833786 AAATATCCCT-AATTTGTAAAATTATCAAAATACGCTCGATTTGTAAAATAACCG
1 AAATA-CCCTCGATTTGTAAAATTATCAAAATACCCT-GATTTGTGAAATTACCG
*
64833840 TAATACCC
1 AAATACCC
64833848 CTATAGGGTA
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
53 6 0.06
54 91 0.90
55 4 0.04
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (53 bp):
AAATACCCTCGATTTGTAAAATTATCAAAATACCCTGATTTGTGAAATTACCG
Found at i:64833795 original size:81 final size:81
Alignment explanation
Indices: 64833656--64833849 Score: 248
Period size: 81 Copynumber: 2.4 Consensus size: 81
64833646 GGTTGTTAAG
* * * * *
64833656 ACCC-CGATTTGTAAAACAATCAAAATACTCAC-GATTTGTAAAATTATCGAAATATCCCTGATT
1 ACCCTCGATTTGTAAAATAACCAAAATAC-CCCTGATTTGTAAAATTACCGAAATATCCCTAATT
* **
64833719 TGTGAAATTATTGAAAT
65 TGTAAAATTATCAAAAT
* *
64833736 ACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATATCCCTAATTT
1 ACCCTCGATTTGTAAAATAACCAAAATACCCCTGATTTGTAAAATTACCGAAATATCCCTAATTT
64833801 GTAAAATTATCAAAAT
66 GTAAAATTATCAAAAT
* **
64833817 ACGCTCGATTTGTAAAATAACCGTAATACCCCT
1 ACCCTCGATTTGTAAAATAACCAAAATACCCCT
64833850 ATAGGGTAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 6 0.06
81 92 0.94
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
ACCCTCGATTTGTAAAATAACCAAAATACCCCTGATTTGTAAAATTACCGAAATATCCCTAATTT
GTAAAATTATCAAAAT
Found at i:64833858 original size:27 final size:27
Alignment explanation
Indices: 64833828--64833903 Score: 125
Period size: 27 Copynumber: 2.7 Consensus size: 27
64833818 CGCTCGATTT
*
64833828 GTAAAATAACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
64833855 GTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
64833882 GTAAAAAATGACCGTAATACCC
1 GT--AAAATGACCGTAATACCC
64833904 TTGTATGGTA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 28 0.61
29 18 0.39
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:64833859 original size:54 final size:54
Alignment explanation
Indices: 64833693--64833876 Score: 131
Period size: 54 Copynumber: 3.4 Consensus size: 54
64833683 CTCACGATTT
* * * * * ** * **
64833693 GTAAAATTATCGAAATATCCCTGATTTGTGAAATTATTGAAATA-CCCTCGATTT
1 GTAAAATTACCAAAATACCCCTGATTTGTAAAATAACCGAAATACCCCT-AATGG
* * * **
64833747 GTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATATCCCTAATTT
1 GTAAAATTACCAAAATACCCCTGATTTGTAAAATAACCGAAATACCCCTAATGG
* * *
64833801 GTAAAATTATCAAAATA-CGCTCGATTTGTAAAATAACCGTAATACCCCT-ATAGG
1 GTAAAATTACCAAAATACCCCT-GATTTGTAAAATAACCGAAATACCCCTAAT-GG
* **
64833855 GTAAAATGACCGTAATACCCCT
1 GTAAAATTACCAAAATACCCCT
64833877 ATAGGGTAAA
Statistics
Matches: 107, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
53 5 0.05
54 95 0.89
55 7 0.07
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTGATTTGTAAAATAACCGAAATACCCCTAATGG
Found at i:64833877 original size:81 final size:81
Alignment explanation
Indices: 64833656--64833877 Score: 216
Period size: 81 Copynumber: 2.8 Consensus size: 81
64833646 GGTTGTTAAG
* * * ** * * *
64833656 ACCC-CGATTTGTAAAACAATCAAAATACTCAC-GATTTGTAAAATTATCGAAATATCCCTGATT
1 ACCCTCGATTTGTAAAATAACCAAAATAC-CCCTGATGGGTAAAATGACCGAAATATCCCTAATT
* **
64833719 TGTGAAATTATTGAAAT
65 TGTAAAATTATCAAAAT
* ** * *
64833736 ACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAATATCCCTAATTT
1 ACCCTCGATTTGTAAAATAACCAAAATACCCCTGATGGGTAAAATGACCGAAATATCCCTAATTT
64833801 GTAAAATTATCAAAAT
66 GTAAAATTATCAAAAT
* ** * *
64833817 ACGCTCGATTTGTAAAATAACCGTAATACCCCT-ATAGGGTAAAATGACCGTAATACCCCTA
1 ACCCTCGATTTGTAAAATAACCAAAATACCCCTGAT-GGGTAAAATGACCGAAATATCCCTA
64833878 TAGGGTAAAA
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
80 8 0.07
81 111 0.93
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (81 bp):
ACCCTCGATTTGTAAAATAACCAAAATACCCCTGATGGGTAAAATGACCGAAATATCCCTAATTT
GTAAAATTATCAAAAT
Found at i:64833899 original size:29 final size:29
Alignment explanation
Indices: 64833830--64833917 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 29
64833820 CTCGATTTGT
*
64833830 AAAATAACCGTAATACCCCTATAGGGT--
1 AAAATGACCGTAATACCCCTATAGGGTAA
64833857 AAAATGACCGTAATACCCCTATAGGGTAA
1 AAAATGACCGTAATACCCCTATAGGGTAA
* * *
64833886 AAAATGACCGTAATACCCTTGTATGGTAA
1 AAAATGACCGTAATACCCCTATAGGGTAA
64833915 AAA
1 AAA
64833918 GACGATTATG
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 26 0.47
29 29 0.53
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (29 bp):
AAAATGACCGTAATACCCCTATAGGGTAA
Found at i:64834147 original size:26 final size:27
Alignment explanation
Indices: 64834057--64834156 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 27
64834047 ATGGAGGAAG
* *
64834057 TACTGTT-CTGGTGACTATGTCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* * * * *
64834083 CACTATTACTGGTGGTTATGCCATAAT
1 TACTGTTACTGGTGGCTATGCCACATT
*
64834110 TACTGATACTGGTGGCT-TGCCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* **
64834136 TACTGTTTCTGGCAGCTATGC
1 TACTGTTACTGGTGGCTATGC
64834157 AGCATTATTA
Statistics
Matches: 55, Mismatches: 17, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
26 25 0.45
27 30 0.55
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTATGCCACATT
Found at i:64834389 original size:33 final size:33
Alignment explanation
Indices: 64834325--64834409 Score: 98
Period size: 33 Copynumber: 2.6 Consensus size: 33
64834315 TTAGGCCCAC
* * *
64834325 ACTGTTACTGTATAGGGCTAAAGCTCGGACTGT
1 ACTGTTATTGTATAGGGCTAAAGCCCAGACTGT
* * *
64834358 TCTGTTATTGTTTAGGGCTAAGGCCCAGACTGT
1 ACTGTTATTGTATAGGGCTAAAGCCCAGACTGT
* *
64834391 ACTGATATTGGATAGGGCT
1 ACTGTTATTGTATAGGGCT
64834410 TTAGCCTAGA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (33 bp):
ACTGTTATTGTATAGGGCTAAAGCCCAGACTGT
Found at i:64838664 original size:27 final size:27
Alignment explanation
Indices: 64838626--64838757 Score: 149
Period size: 27 Copynumber: 4.9 Consensus size: 27
64838616 TAAGACCCGT
*
64838626 ATTTGTAAAATTACCGAAATACCTCTA
1 ATTTGTAAAATTACCGAAATACCCCTA
* *
64838653 ATTTGTGAAATTATCGAAATACCCCTA
1 ATTTGTAAAATTACCGAAATACCCCTA
** *
64838680 ATTTGTAAAATTATTGAAATACCCCTG
1 ATTTGTAAAATTACCGAAATACCCCTA
* **
64838707 ATTTGTGAAATTACTAAAATACCCC-A
1 ATTTGTAAAATTACCGAAATACCCCTA
* *
64838733 GATTTGTAAAATGACCGTAATACCC
1 -ATTTGTAAAATTACCGAAATACCC
64838758 TGTAGGGTAA
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACCGAAATACCCCTA
Found at i:64838711 original size:54 final size:54
Alignment explanation
Indices: 64838626--64838757 Score: 169
Period size: 54 Copynumber: 2.4 Consensus size: 54
64838616 TAAGACCCGT
* *
64838626 ATTTGTAAAATTACCGAAATACCTCTAATTTGTGAAATTA-TCGAAATACCCCTA-
1 ATTTGTAAAATTACCGAAATACCCCTAATTTGTGAAATTACT-AAAATACCCC-AG
** *
64838680 ATTTGTAAAATTATTGAAATACCCCTGATTTGTGAAATTACTAAAATACCCCAG
1 ATTTGTAAAATTACCGAAATACCCCTAATTTGTGAAATTACTAAAATACCCCAG
* *
64838734 ATTTGTAAAATGACCGTAATACCC
1 ATTTGTAAAATTACCGAAATACCC
64838758 TGTAGGGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 65 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (54 bp):
ATTTGTAAAATTACCGAAATACCCCTAATTTGTGAAATTACTAAAATACCCCAG
Found at i:64838795 original size:27 final size:26
Alignment explanation
Indices: 64838738--64838813 Score: 107
Period size: 26 Copynumber: 2.8 Consensus size: 26
64838728 CCCCAGATTT
64838738 GTAAAATGACCGTAATACCCTGTAGG
1 GTAAAATGACCGTAATACCCTGTAGG
*
64838764 GTAAAATGACTGTAATACCTCTGTAGG
1 GTAAAATGACCGTAATACC-CTGTAGG
*
64838791 GTAAAAAATGATCGTAATACCCT
1 GT--AAAATGACCGTAATACCCT
64838814 TGCATGGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 18 0.41
27 9 0.20
28 2 0.05
29 15 0.34
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (26 bp):
GTAAAATGACCGTAATACCCTGTAGG
Found at i:64838822 original size:29 final size:28
Alignment explanation
Indices: 64838740--64838826 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 28
64838730 CCAGATTTGT
64838740 AAAATGACCGTAATACCC-TGTAGGGT--
1 AAAATGA-CGTAATACCCTTGTAGGGTAA
64838766 AAAATGACTGTAATA-CCTCTGTAGGGTAA
1 AAAATGAC-GTAATACCCT-TGTAGGGTAA
* *
64838795 AAAATGATCGTAATACCCTTGCATGGTAA
1 AAAATGA-CGTAATACCCTTGTAGGGTAA
64838824 AAA
1 AAA
64838827 GACAATTATG
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
25 3 0.06
26 13 0.25
27 8 0.15
29 24 0.46
30 4 0.08
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (28 bp):
AAAATGACGTAATACCCTTGTAGGGTAA
Found at i:64839009 original size:27 final size:26
Alignment explanation
Indices: 64838965--64839050 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 26
64838955 ATGGACGAAG
*
64838965 TACTG-TACTGGTGACTATGCCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
64838990 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
*
64839018 TACTGATACTGGTGGCT-TGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
64839044 TACTGTT
1 TACTGTT
64839051 TCTAGCAGCT
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.04
26 17 0.31
27 32 0.59
28 3 0.06
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:64843211 original size:23 final size:23
Alignment explanation
Indices: 64843185--64843260 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
64843175 CGGACTCACA
64843185 TTAGCTCATATGAGCTTACCATT
1 TTAGCTCATATGAGCTTACCATT
* *
64843208 TTAGCTTAT-TAGAGCTTACTGA-T
1 TTAGCTCATAT-GAGCTTAC-CATT
* *
64843231 TTAGCTCATAAGAGCTTATCATT
1 TTAGCTCATATGAGCTTACCATT
*
64843254 TCAGCTC
1 TTAGCTC
64843261 TTTGGAGCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
22 2 0.05
23 39 0.93
24 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.39
Consensus pattern (23 bp):
TTAGCTCATATGAGCTTACCATT
Found at i:64843254 original size:46 final size:45
Alignment explanation
Indices: 64843185--64843317 Score: 146
Period size: 46 Copynumber: 2.9 Consensus size: 45
64843175 CGGACTCACA
* * *
64843185 TTAGCTCATATGAGCTTACCATTTTAGCT-TATTAGAGCTTACTGAT
1 TTAGCTCATAAGAGCTTATCATTTCAGCTCT-TTAGAGCTTACTG-T
*
64843231 TTAGCTCATAAGAGCTTATCATTTCAGCTCTTTGGAGCTTACTGT
1 TTAGCTCATAAGAGCTTATCATTTCAGCTCTTTAGAGCTTACTGT
* * *
64843276 TTCAACTC-TACAGAGCTTATC-GTTCAGCTCTTTGGAGCTTAC
1 TT-AGCTCATA-AGAGCTTATCATTTCAGCTCTTTAGAGCTTAC
64843318 CATTTATCAG
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
45 25 0.32
46 52 0.67
47 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (45 bp):
TTAGCTCATAAGAGCTTATCATTTCAGCTCTTTAGAGCTTACTGT
Found at i:64843268 original size:23 final size:23
Alignment explanation
Indices: 64843242--64843322 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 23
64843232 TAGCTCATAA
64843242 GAGCTTATCATTTCAGCTCTTTG
1 GAGCTTATCATTTCAGCTCTTTG
* * ***
64843265 GAGCTTA-CTGTTTCAACTCTACA
1 GAGCTTATC-ATTTCAGCTCTTTG
*
64843288 GAGCTTATC-GTTCAGCTCTTTG
1 GAGCTTATCATTTCAGCTCTTTG
*
64843310 GAGCTTACCATTT
1 GAGCTTATCATTT
64843323 ATCAGCTTAA
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
22 17 0.40
23 25 0.58
24 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (23 bp):
GAGCTTATCATTTCAGCTCTTTG
Found at i:64843317 original size:45 final size:46
Alignment explanation
Indices: 64843219--64843317 Score: 141
Period size: 45 Copynumber: 2.2 Consensus size: 46
64843209 TAGCTTATTA
* *
64843219 GAGCTTACTGATTTAGCTCATAAGAGCTTATCATTTCAGCTCTTTG
1 GAGCTTACTGATTTAACTCATAAGAGCTTATCAGTTCAGCTCTTTG
64843265 GAGCTTACTG-TTTCAACTC-TACAGAGCTTATC-GTTCAGCTCTTTG
1 GAGCTTACTGATTT-AACTCATA-AGAGCTTATCAGTTCAGCTCTTTG
64843310 GAGCTTAC
1 GAGCTTAC
64843318 CATTTATCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
45 25 0.51
46 24 0.49
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (46 bp):
GAGCTTACTGATTTAACTCATAAGAGCTTATCAGTTCAGCTCTTTG
Found at i:64845037 original size:29 final size:29
Alignment explanation
Indices: 64844936--64845022 Score: 165
Period size: 29 Copynumber: 3.0 Consensus size: 29
64844926 GTGACGAGAT
*
64844936 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64844965 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64844994 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64845023 CGTCACTGGG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64845054 original size:58 final size:58
Alignment explanation
Indices: 64844932--64845066 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 58
64844922 TACGGTGACG
* * *
64844932 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* * **
64844989 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGTCACTGGGTGTGCCA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTG-CATGCTCGAA
* * *
64845047 GGCTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
64845067 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
57 3 0.05
58 60 0.92
59 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:64846621 original size:9 final size:9
Alignment explanation
Indices: 64846604--64846645 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
64846594 AAAGAGCTAT
*
64846604 ATGACTTAC
1 ATGAATTAC
64846613 ATGAATTAC
1 ATGAATTAC
64846622 ATGAATTAC
1 ATGAATTAC
* *
64846631 ATGGATTAT
1 ATGAATTAC
64846640 ATGAAT
1 ATGAAT
64846646 ATGAATACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (9 bp):
ATGAATTAC
Found at i:64853361 original size:15 final size:15
Alignment explanation
Indices: 64853341--64853370 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64853331 TTGCCCAACA
64853341 CTTACCACAATGCTG
1 CTTACCACAATGCTG
64853356 CTTACCACAATGCTG
1 CTTACCACAATGCTG
64853371 ACACTCAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (15 bp):
CTTACCACAATGCTG
Found at i:64856051 original size:49 final size:50
Alignment explanation
Indices: 64855987--64856220 Score: 233
Period size: 50 Copynumber: 4.6 Consensus size: 50
64855977 ATCTGGTAAG
64855987 CATAGTAGCCTGCACTTAGTACTACACATGTGACC-AAAAATTCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATTCGGTACA
* * * ** * *
64856036 CTTAGTAGCCTGCACTTAGTACTATACACGTGACCTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATTCGGTACA
* * * * ***
64856086 CATAGTAGCCTGGACTTAGTACTACACACGTGATCGAAGTTTTCGG-ACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATTCGGTACA
*
64856135 CGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAACCA-TC-TTAAACA
1 --CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAA--ATTCGGT--ACA
* *
64856189 CATAGTAGCCTACACATAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
64856221 TTCTCACAAT
Statistics
Matches: 150, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
49 35 0.23
50 46 0.31
51 34 0.23
52 32 0.21
54 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATTCGGTACA
Found at i:64861774 original size:48 final size:48
Alignment explanation
Indices: 64861703--64861927 Score: 288
Period size: 48 Copynumber: 4.7 Consensus size: 48
64861693 ACCATGCTAA
* * * *
64861703 ATGTGCCTGTTTAAGACCATGTCTGGGACATGGCATCAGCGGTTATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
64861751 ATGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGATTATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
64861799 ATGTGCCAGTGTAAGACCATGTATGAGACATGGCATCGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * * **
64861847 ATGTGCCAATGTAAGACCAAGTTTGGGACATGGCATCAATGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
64861895 TTGTGCTAGTGTAAGACCATGTCAGGGACATGG
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGG
64861928 AATCGACAAT
Statistics
Matches: 155, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 155 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
Found at i:64868846 original size:46 final size:46
Alignment explanation
Indices: 64868796--64868971 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64868786 TGGTTGAGCA
64868796 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64868842 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
64868887 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64868935 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64868972 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64868952 original size:93 final size:93
Alignment explanation
Indices: 64868793--64868964 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64868783 GGATGGTTGA
* *
64868793 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64868858 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
64868886 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64868951 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64868965 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64876425 original size:46 final size:46
Alignment explanation
Indices: 64876375--64876550 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64876365 TGGTTGAGCA
64876375 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64876421 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
64876466 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64876514 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64876551 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64876531 original size:93 final size:93
Alignment explanation
Indices: 64876372--64876543 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64876362 GGATGGTTGA
* *
64876372 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64876437 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
64876465 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64876530 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64876544 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.