Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 218 of 770
Found at i:65166342 original size:18 final size:16
Alignment explanation
Indices: 65166309--65166343 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
65166299 TTCGATTACA
65166309 TAATTTATTCACTATT
1 TAATTTATTCACTATT
65166325 TAATTCTATTCTACTATT
1 TAATT-TATTC-ACTATT
65166343 T
1 T
65166344 TTAGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (16 bp):
TAATTTATTCACTATT
Found at i:65167206 original size:29 final size:29
Alignment explanation
Indices: 65167172--65167245 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
65167162 TAATCAACCA
*
65167172 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
*
65167201 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAACT
65167230 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
65167246 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 3 0.07
29 39 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:65169151 original size:40 final size:40
Alignment explanation
Indices: 65169078--65169285 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
65169068 CAATTGAATG
* * * ** *
65169078 ATATTCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * *
65169118 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
65169158 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
65169198 AAATCCGGGCTAATACCCAAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
65169238 CTATCCGGGCTAAGACCTGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
65169278 ATATCCGG
1 ATATCCGG
65169286 TTGTATTCTG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 4 0.03
40 131 0.94
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:65169228 original size:80 final size:80
Alignment explanation
Indices: 65169083--65169285 Score: 214
Period size: 80 Copynumber: 2.5 Consensus size: 80
65169073 GAATGATATT
* * ** * * * *
65169083 CGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCATTGT
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCAAAGGCCATTGT
*
65169148 GCTAGT-G-ACTACATC
66 GCAAGTCGTACT--ATC
* * *
65169163 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCAAAGG-CATTTG
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCAAAGGCCA-TTG
*
65169227 TGCAAGTCGTTCTATC
65 TGCAAGTCGTACTATC
* * *
65169243 CGGGCTAAGACCTGAAGGCATTCGTGCATGTGGTTATATCCGG
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
65169286 TTGTATTCTG
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 2 0.02
80 98 0.95
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCAAAGGCCATTGT
GCAAGTCGTACTATC
Found at i:65174868 original size:45 final size:45
Alignment explanation
Indices: 65174812--65174969 Score: 185
Period size: 45 Copynumber: 3.5 Consensus size: 45
65174802 TAAGAAATTC
* *
65174812 GAGCTCGTTGAGTTGGTCCGAGTTCATGATATATGTGAGAAATCT
1 GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAGACATCT
* * * * *
65174857 GAACTTGTTGAGTTGGTCTAAGTTCATGGTATATGTGA-AGCATCC
1 GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAGA-CATCT
* ** *
65174902 GAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATGCGAG-CATCT
1 GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAGACATCT
*
65174946 GAGCTCGTTGAGTTGGTCCGAGTT
1 GAGCTCGTTGAGTTGGTCCAAGTT
65174970 AATAATGGAA
Statistics
Matches: 94, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
44 28 0.30
45 66 0.70
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.34
Consensus pattern (45 bp):
GAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAGACATCT
Found at i:65179021 original size:79 final size:82
Alignment explanation
Indices: 65178881--65179065 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
65178871 TCGAATGATG
* * *
65178881 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
65178945 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
65178961 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
65179023 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
65179041 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65179066 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:65179073 original size:40 final size:40
Alignment explanation
Indices: 65178882--65179073 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
65178872 CGAATGATGT
* * * * *
65178882 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
65178922 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
65178962 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
65179001 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
65179041 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
65179074 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:65179096 original size:79 final size:79
Alignment explanation
Indices: 65178881--65179098 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
65178871 TCGAATGATG
* * * * ** *
65178881 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
65178944 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
65178961 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
65179026 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
65179041 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
65179099 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:65187062 original size:79 final size:82
Alignment explanation
Indices: 65186922--65187106 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
65186912 TCGAATGATG
* * *
65186922 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
65186986 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
65187002 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
65187064 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
65187082 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65187107 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:65187114 original size:40 final size:40
Alignment explanation
Indices: 65186923--65187114 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
65186913 CGAATGATGT
* * * * *
65186923 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
65186963 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
65187003 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
65187042 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
65187082 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
65187115 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:65187137 original size:79 final size:79
Alignment explanation
Indices: 65186922--65187139 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
65186912 TCGAATGATG
* * * * ** *
65186922 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
65186985 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
65187002 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
65187067 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
65187082 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
65187140 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:65188623 original size:27 final size:26
Alignment explanation
Indices: 65188567--65188623 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
65188557 CAACCTTAAC
* * *
65188567 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
65188593 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
65188620 CCTA
1 CCTA
65188624 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:65189876 original size:5 final size:5
Alignment explanation
Indices: 65189866--65189897 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
65189856 GTAGATGAAG
65189866 AGAAA AGAAA AGAAA AGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
65189898 AAATGAATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:65191553 original size:27 final size:27
Alignment explanation
Indices: 65191522--65191789 Score: 232
Period size: 27 Copynumber: 10.1 Consensus size: 27
65191512 TTAGTTTACT
65191522 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65191549 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
65191576 AAATTACCAAAATACCCCTCGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
65191603 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65191630 AAATTATCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
65191657 AAATTACCGAAATA-CCCTCAATTTG--
1 AAATTACCAAAATACCCCT-GGTTTGTA
* **
65191682 ----TA--AAAATACCCCTGATTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65191703 AAATTACAAAAATACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCCTG-GTTTGT-A
*
65191732 AAATTA-TAGAAATACCCCTGGTTTGTA
1 AAATTACCA-AAATACCCCTGGTTTGTA
* *
65191759 AAATTATCAAAATACCACTGGTTTGTGA
1 AAATTACCAAAATACCCCTGGTTTGT-A
65191787 AAA
1 AAA
65191790 AATTACAGAA
Statistics
Matches: 196, Mismatches: 30, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
19 9 0.05
20 4 0.02
21 2 0.01
25 2 0.01
26 3 0.02
27 146 0.74
28 13 0.07
29 17 0.09
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:65191587 original size:54 final size:54
Alignment explanation
Indices: 65191522--65191906 Score: 229
Period size: 54 Copynumber: 7.1 Consensus size: 54
65191512 TTAGTTTACT
* *
65191522 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
65191576 AAATTACCAAAATACCCCTCGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * ***
65191630 AAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCC-TCAATT-T-
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * ** * * *
65191681 ---GTA--AAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG-GTTTAT-A
* * *
65191732 AAATTA-TAGAAATACCCCTGGTTTGTAAAATTATCAAAATACCAC-TGGTTTGTGAAA
1 AAATTACCA-AAATACCCCTGGTTTGTAAAATTACCAAAATACC-CTTGG-TT-T-ATA
* * * * * *
65191789 AAATTA-CAGAAATACACTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTATA
1 AAATTACCA-AAATACCCCTG-GTTTGT-AAAATTACCA-AAATACCCTTGGTTTATA
** * * * *** *
65191845 AAATTACTGAAAT-GCCCTCGATTTGTAGAATTACCATTTTACCCTTGATTTATA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
65191899 GAATTACC
1 AAATTACC
65191907 GTTTCACCTT
Statistics
Matches: 253, Mismatches: 57, Indels: 42
0.72 0.16 0.12
Matches are distributed among these distances:
46 29 0.11
47 1 0.00
48 4 0.02
49 1 0.00
52 1 0.00
53 3 0.01
54 115 0.45
55 8 0.03
56 46 0.18
57 21 0.08
58 7 0.03
59 17 0.07
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:65191744 original size:29 final size:28
Alignment explanation
Indices: 65191702--65191847 Score: 109
Period size: 29 Copynumber: 5.1 Consensus size: 28
65191692 CCTGATTTAC
* *
65191702 AAAATTACAAAAATACCCTTGACTTTCTA
1 AAAATTATAGAAATACCCTTG-CTTTCTA
* * *
65191731 AAAATTATAGAAATACCCCTGGTTTGT-
1 AAAATTATAGAAATACCCTTGCTTTCTA
* *
65191758 AAAATTATCA-AAATACCAC-TGGTTTGTGAA
1 AAAATTAT-AGAAATACC-CTTGCTTTCT--A
* *
65191788 AAAATTACAGAAATACACTTGACTTTCTA
1 AAAATTATAGAAATACCCTTG-CTTTCTA
* * *
65191817 AAAATTATAGAAATACCATTGGTTTATA
1 AAAATTATAGAAATACCCTTGCTTTCTA
65191845 AAA
1 AAA
65191848 TTACTGAAAT
Statistics
Matches: 95, Mismatches: 14, Indels: 17
0.75 0.11 0.13
Matches are distributed among these distances:
27 23 0.24
28 14 0.15
29 39 0.41
30 15 0.16
31 4 0.04
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.32
Consensus pattern (28 bp):
AAAATTATAGAAATACCCTTGCTTTCTA
Found at i:65191889 original size:27 final size:27
Alignment explanation
Indices: 65191859--65192056 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
65191849 TACTGAAATG
** *
65191859 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
65191886 CCCTTGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
65191913 CCTTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
65191940 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
65191967 CCCTCAATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
65191994 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
65192021 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
65192048 CCCTCGATT
1 CCCTCGATT
65192057 GTGAAATTAC
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:65191932 original size:81 final size:81
Alignment explanation
Indices: 65191839--65192014 Score: 226
Period size: 81 Copynumber: 2.2 Consensus size: 81
65191829 ATACCATTGG
* * * * ** *
65191839 TTTATAAAATTACTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTTGATTTATAGAATT
1 TTTACAAAATTACCGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATT
*
65191904 ACCGTTTCACCTTCGA
66 ACCGTTTCACCCTCGA
*** *
65191920 TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATT
1 TTTACAAAATTACCGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATT
* *
65191985 ATCGTTTTACCCTCGA
66 ACCGTTTCACCCTCGA
65192001 TTTACAAAATTACC
1 TTTACAAAATTACC
65192015 ATTTTACCCT
Statistics
Matches: 81, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (81 bp):
TTTACAAAATTACCGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATT
ACCGTTTCACCCTCGA
Found at i:65192020 original size:81 final size:81
Alignment explanation
Indices: 65191859--65192052 Score: 264
Period size: 81 Copynumber: 2.4 Consensus size: 81
65191849 TACTGAAATG
* * ** * *
65191859 CCCTCGATTTGTAGAATTACCATTTTACCCTTGATTTATAGAATTACCGTTTCACCTTCGATTTA
1 CCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTACCGTTTCACCCTCGATTTA
*
65191924 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* *
65191940 CCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTACCGTTTCACCCTCGATTTA
65192005 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
65192021 CCCTC-AGTTTACAAAATTACTGTTTTACCCTC
1 CCCTCGA-TTTATAGAATTACTATTTTACCCTC
65192053 GATTGTGAAA
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 99 0.99
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:65192187 original size:27 final size:27
Alignment explanation
Indices: 65192061--65192498 Score: 569
Period size: 27 Copynumber: 16.3 Consensus size: 27
65192051 TCGATTGTGA
* * *
65192061 AATTACTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
65192088 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
65192115 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
65192142 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
65192169 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
65192196 AATTATCGGAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
65192223 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
65192250 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
65192277 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
65192304 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
65192331 AATTACCGAAATACCCCTGTAGGCTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
65192358 AGTTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
65192385 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
65192412 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
65192439 AATTACTAAAATACCCCGGTAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
65192465 AAATTACCGAGATA-CCTTGTGGGGTAA
1 -AATTACCGAAATACCCCTGTAGGGTAG
65192492 AATTACC
1 AATTACC
65192499 ATTTTGCCCC
Statistics
Matches: 370, Mismatches: 37, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
26 18 0.05
27 351 0.95
28 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:65193414 original size:6 final size:6
Alignment explanation
Indices: 65193399--65193489 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
65193389 ATTCTGTTAC
* * * *
65193399 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTAATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
65193448 CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
65193490 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:65193427 original size:31 final size:31
Alignment explanation
Indices: 65193376--65193447 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
65193366 TTGTATTCAC
* *
65193376 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTAATACTG
65193408 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
65193439 ATTCTGATT
1 ATTCTGATT
65193448 CTGTCACCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 31 0.82
32 7 0.18
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:65193446 original size:25 final size:25
Alignment explanation
Indices: 65193411--65193475 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
65193401 GATACTGATT
* *
65193411 CTGATTTTGATTCTGTTACCTAATA
1 CTGATTCTGATTCTGTCACCTAATA
*
65193436 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
65193461 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
65193476 ATTCTAGTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:65193471 original size:31 final size:30
Alignment explanation
Indices: 65193389--65193480 Score: 104
Period size: 31 Copynumber: 3.2 Consensus size: 30
65193379 CTGATTTTTT
* *
65193389 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTAAT-CTGATTCTGATTCTG
65193420 ATTCTGTTACCTAA--T-A--CTGATTCTG
1 ATTCTGTTACCTAATCTGATTCTGATTCTG
*
65193445 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTAA-TCTGATTCTGATTCTG
65193476 ATTCT
1 ATTCT
65193481 AGTTCTGATA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
25 21 0.40
27 1 0.02
28 2 0.04
29 1 0.02
31 27 0.52
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.47
Consensus pattern (30 bp):
ATTCTGTTACCTAATCTGATTCTGATTCTG
Found at i:65195464 original size:27 final size:27
Alignment explanation
Indices: 65195434--65195714 Score: 262
Period size: 27 Copynumber: 10.3 Consensus size: 27
65195424 TTAGTTTACC
*
65195434 AAATTTCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65195461 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
65195488 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
65195515 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
65195542 AAATTATTAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
65195569 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* *
65195596 AAATTACCAAAATACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65195623 AAATTACAAAAATACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCCTG-GTTTGT-A
* ** *
65195652 AAATTA-TAGAAATACCATTGGTTTATA
1 AAATTACCA-AAATACCCCTGGTTTGTA
* * *
65195679 AAATTACTAAAAT-GCCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
65195706 GAATTACCA
1 AAATTACCA
65195715 TTTTACCCTC
Statistics
Matches: 209, Mismatches: 38, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.02
27 172 0.82
28 15 0.07
29 17 0.08
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:65195723 original size:27 final size:27
Alignment explanation
Indices: 65195693--65195890 Score: 252
Period size: 27 Copynumber: 7.3 Consensus size: 27
65195683 TACTAAAATG
* *
65195693 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
65195720 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
65195747 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
**
65195774 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
65195801 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
65195828 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
** * *
65195855 CCCTAAATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
65195882 CCCTCGATT
1 CCCTCGATT
65195891 GTGAAATTAC
Statistics
Matches: 148, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:65195778 original size:81 final size:81
Alignment explanation
Indices: 65195693--65195890 Score: 297
Period size: 81 Copynumber: 2.4 Consensus size: 81
65195683 TACTAAAATG
* *
65195693 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
*
65195758 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* * *
65195774 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
65195839 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
** * * *
65195855 CCCTAAATTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATT
65195891 GTGAAATTAC
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:65195925 original size:27 final size:27
Alignment explanation
Indices: 65195895--65196463 Score: 576
Period size: 27 Copynumber: 21.2 Consensus size: 27
65195885 TCGATTGTGA
*
65195895 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** *
65195922 AATTAC-CAAATTACCCCTAGT-TTGTAA
1 AATTACTGAAA-TACCCCT-GTAGGGTAG
** **
65195949 AATTACCAAAATACCCCTAGT-TTGTA-
1 AATTACTGAAATACCCCT-GTAGGGTAG
* *
65195975 AATTTA-TCGAAATACCCCTGTAGGGCAA
1 AA-TTACT-GAAATACCCCTGTAGGGTAG
* *
65196003 AATTACTGAAATACCCCTGTAGGGCAA
1 AATTACTGAAATACCCCTGTAGGGTAG
65196030 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
65196057 AATTAC-CAGAATACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
*
65196084 AATTAC-CAGAATACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
* * *
65196111 AATTACCGGAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
65196138 AATTACCGGAATACCCC---AGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
65196162 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
65196189 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
65196216 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
65196243 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
65196270 AATTA-TCGGAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
65196297 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
65196324 AGTTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
65196351 AATTA-TCGCAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
65196378 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
65196405 AATTACTAAAATACCCCTATAGGGT-G
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
65196431 AAATTACTGAGATA-CCTTGTGGGGTAA
1 -AATTACTGAAATACCCCTGTAGGGTAG
65196458 AATTAC
1 AATTAC
65196464 CATTTTGCCT
Statistics
Matches: 483, Mismatches: 38, Indels: 43
0.86 0.07 0.08
Matches are distributed among these distances:
24 23 0.05
26 25 0.05
27 426 0.88
28 9 0.02
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:65196032 original size:81 final size:81
Alignment explanation
Indices: 65195895--65196464 Score: 658
Period size: 81 Copynumber: 7.1 Consensus size: 81
65195885 TCGATTGTGA
* * * ** * *
65195895 AATTACTGAAATACCCCTGTAGGATAGAATTAC-CAAATTACCCCTAGT-TTGTAAAATTACCAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAA-TACCCCT-GTAGGGTAGAATTACCGA
**
65195958 AATACCCCTAGT-TTGTA-
64 AATACCCCT-GTAGGGTAG
* * * * * *
65195975 AATTTATCGAAATACCCCTGTAGGGCAAAATTACTGAAATACCCCTGTAGGGCAAAATTATCGAA
1 AA-TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAA
65196040 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* *
65196057 AATTACC-AGAATACCCCTGTAGGGTAGAATTAC-CAGAATACCCCTGTAGGGTAGAATTACCGG
1 AATTACCGA-AATACCCCTGTAGGGTAGAATTACTGA-AATACCCCTGTAGGGTAGAATTACCGA
*
65196120 AATACCCCTGTAGGATAG
64 AATACCCCTGTAGGGTAG
* * * *
65196138 AATTACCGGAATACCCC---AGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCAAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
65196200 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
65196216 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTATCGGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
65196281 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
65196297 AATTATCGAAATACCCCTGTAGGGTAGAGTTACTGAAATACCCCTGTAGGGTAGAATTATCGCAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
65196362 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
65196378 AATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTATAGGGT-GAAATTACTGAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG-AATTACCGAA
* * *
65196442 ATA-CCTTGTGGGGTAA
65 ATACCCCTGTAGGGTAG
65196458 AATTACC
1 AATTACC
65196465 ATTTTGCCTC
Statistics
Matches: 428, Mismatches: 49, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
78 71 0.17
80 26 0.06
81 326 0.76
82 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:65197122 original size:27 final size:27
Alignment explanation
Indices: 65197092--65197193 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
65197082 ATTCTGTTAA
* *
65197092 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
65197119 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
65197146 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
65197173 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
65197194 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:65197381 original size:31 final size:31
Alignment explanation
Indices: 65197330--65197401 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
65197320 TTGCATTCAC
*
65197330 ATTCTGATTTTTTATTCTGTTACCTGATACAG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACAG
*
65197362 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACAG
65197393 ATTCTGATT
1 ATTCTGATT
65197402 CTGTCACCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 31 0.82
32 7 0.18
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACAG
Found at i:65197400 original size:25 final size:25
Alignment explanation
Indices: 65197365--65197428 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
65197355 GATACAGATT
* * *
65197365 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
65197390 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
* *
65197415 TTCATTCTGATTCT
1 CTGATTCTGATTCT
65197429 AGTTCTGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:65203235 original size:27 final size:28
Alignment explanation
Indices: 65203205--65203304 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 28
65203195 ATAGTGAGTC
65203205 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
65203232 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * * *
65203260 CACACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
65203291 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65203305 AATCTCATGA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
27 21 0.35
28 19 0.32
29 2 0.03
31 18 0.30
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:65204157 original size:7 final size:7
Alignment explanation
Indices: 65204147--65204171 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65204137 TCATCACCAC
65204147 AACATCA
1 AACATCA
65204154 AACATCA
1 AACATCA
65204161 AACATCA
1 AACATCA
65204168 AACA
1 AACA
65204172 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:65204463 original size:30 final size:34
Alignment explanation
Indices: 65204394--65204463 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 34
65204384 AGGATGGACA
* *
65204394 CTTTTTTTTTCCTTTGTTTTCATCATATTTTCCTT
1 CTTTCTTTTTCCTTTGTTTTCAT-ATATTTTCATT
65204429 -TTTCTTTTT-CTTT-TTTTCAT-TATTTT-ATT
1 CTTTCTTTTTCCTTTGTTTTCATATATTTTCATT
65204458 CTTTCT
1 CTTTCT
65204464 AACATAACCA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
29 2 0.06
30 11 0.34
32 7 0.22
33 4 0.12
34 8 0.25
ACGTcount: A:0.09, C:0.17, G:0.01, T:0.73
Consensus pattern (34 bp):
CTTTCTTTTTCCTTTGTTTTCATATATTTTCATT
Found at i:65208971 original size:27 final size:28
Alignment explanation
Indices: 65208941--65209040 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
65208931 ATAGTGAGTC
65208941 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
65208968 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
65208996 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
65209027 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65209041 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:65210167 original size:27 final size:27
Alignment explanation
Indices: 65210122--65210182 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
65210112 GGATGGACAC
65210122 TTTT-TTTTTCCTTTGTTTTCATCATA
1 TTTTCTTTTTCCTTTGTTTTCATCATA
* * * *
65210148 TTTTCTTTTTCTTTTTTTTTCATTATT
1 TTTTCTTTTTCCTTTGTTTTCATCATA
65210175 TTTTCTTT
1 TTTTCTTT
65210183 CTAACATAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.08, C:0.13, G:0.02, T:0.77
Consensus pattern (27 bp):
TTTTCTTTTTCCTTTGTTTTCATCATA
Found at i:65213753 original size:19 final size:20
Alignment explanation
Indices: 65213724--65213763 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
65213714 CAACGGATAC
65213724 AAAACTCTTGACATGACATG
1 AAAACTCTTGACATGACATG
* *
65213744 AAAA-TCTTGAGATGATATG
1 AAAACTCTTGACATGACATG
65213763 A
1 A
65213764 TAATGACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (20 bp):
AAAACTCTTGACATGACATG
Found at i:65218350 original size:22 final size:22
Alignment explanation
Indices: 65218304--65218412 Score: 128
Period size: 22 Copynumber: 4.9 Consensus size: 22
65218294 TGATGAACAA
* *
65218304 TAAGCTCTATTGTGCTGAAACGG
1 TAAGCTCTATCGAGCTG-AACGG
*
65218327 TAAGCTCTATCGAACTGAACGG
1 TAAGCTCTATCGAGCTGAACGG
65218349 TAAGCTCTATCGAGCTGAACGG
1 TAAGCTCTATCGAGCTGAACGG
* * *
65218371 TAAGCTCTATTGAGCTGAAATGA
1 TAAGCTCTATCGAGCTG-AACGG
* *
65218394 TAAGCTCAATTGAGCTGAA
1 TAAGCTCTATCGAGCTGAA
65218413 AACAGTAAGC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
22 44 0.57
23 33 0.43
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (22 bp):
TAAGCTCTATCGAGCTGAACGG
Found at i:65218353 original size:45 final size:46
Alignment explanation
Indices: 65218303--65218425 Score: 151
Period size: 45 Copynumber: 2.7 Consensus size: 46
65218293 CTGATGAACA
*
65218303 ATAAGCTCTATTGTGCTGAAACGGTAAGCTCTATCGAACTG-AACG
1 ATAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCGAACTGAAACG
* * * * *
65218348 GTAAGCTCTATCGAGCTG-AACGGTAAGCTCTATTGAGCTGAAATG
1 ATAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCGAACTGAAACG
* *
65218393 ATAAGCTCAATTGAGCTGAAAACAGTAAGCTCT
1 ATAAGCTCTATTGAGCTG-AAACGGTAAGCTCT
65218426 TTCAAGATGA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 20 0.31
45 33 0.51
47 12 0.18
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (46 bp):
ATAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCGAACTGAAACG
Found at i:65229035 original size:47 final size:48
Alignment explanation
Indices: 65228884--65229055 Score: 194
Period size: 48 Copynumber: 3.6 Consensus size: 48
65228874 TCGTTTACTT
**
65228884 GATGCCATAGT-TCA-ACTATGGTCTTGTACTAGCTCTCGTCTCAATGCC
1 GATGCCAT-GTCTCAGAC-ATGGTCTTACACTAGCTCTCGTCTCAATGCC
* * * * *
65228932 GATGCCATGTCTCATACATGGTCTTACACTGGCTCTC--ATAATATGGCT
1 GATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCGTCTCA-AT-GCC
65228980 GATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCC
*
65229026 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCTCAGACATGGTCTTACACT
65229056 GGCATACAAA
Statistics
Matches: 104, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
46 24 0.23
47 32 0.31
48 46 0.44
49 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (48 bp):
GATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCC
Found at i:65229252 original size:6 final size:6
Alignment explanation
Indices: 65229234--65229292 Score: 59
Period size: 6 Copynumber: 9.7 Consensus size: 6
65229224 AAGAAACATT
*
65229234 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGT ATCAAGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA
*
65229283 ATCAAA ATCA
1 ATCAGA ATCA
65229293 AAATGTGAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
5 3 0.07
6 37 0.82
7 4 0.09
8 1 0.02
ACGTcount: A:0.51, C:0.17, G:0.14, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:65229463 original size:27 final size:26
Alignment explanation
Indices: 65229415--65229474 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
65229405 GTGAGGCTGC
*
65229415 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
65229442 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
65229468 CAGATAT
1 CAGATAT
65229475 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65229478 original size:2 final size:2
Alignment explanation
Indices: 65229471--65229504 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
65229461 ACCAGAACAG
65229471 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65229505 GTGTGTGGCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65229800 original size:27 final size:27
Alignment explanation
Indices: 65229770--65229913 Score: 184
Period size: 27 Copynumber: 5.3 Consensus size: 27
65229760 GGGGTAAAAT
* *
65229770 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
65229797 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
65229824 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
65229851 GGT-ATTTATACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
65229878 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
65229905 GGTAATTTT
1 GGTAATTTT
65229914 GTAAATCGAG
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
26 3 0.03
27 97 0.93
28 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:65229925 original size:27 final size:27
Alignment explanation
Indices: 65229895--65230074 Score: 125
Period size: 27 Copynumber: 6.7 Consensus size: 27
65229885 CTACCCTACA
**
65229895 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*** * * *
65229922 AGGGTAAAACGGTAATTCTATAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
65229948 AGGGGTACTTT-GGTAATTTTACAAGTCA
1 A-GGGTA-TTTCGGTAATTTTACAAATCG
** **
65229976 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
65230003 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
65230029 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAATCG
*
65230056 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTCGGTAATTT
65230075 GGTAAACTAA
Statistics
Matches: 123, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
26 6 0.05
27 116 0.94
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:65229978 original size:81 final size:80
Alignment explanation
Indices: 65229892--65230080 Score: 191
Period size: 81 Copynumber: 2.3 Consensus size: 80
65229882 TTTCTACCCT
* * *
65229892 ACAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAA-TTCTATAAATTAGGGGTAC
1 ACAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTC-ACAAATCAGGGGTAC
65229956 TTTGGTAATTTTACAA
65 TTTGGTAATTTTACAA
* ** ** ** *** *
65229972 GTCAAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTAT
1 -ACAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTAC
65230037 TTTGGTAATTTTACAA
65 TTTGGTAATTTTACAA
* * *
65230053 ACTAGGGGTATTTTGGTAATTTGGTAAA
1 AC-AAGGGTATTTCGGTAATTTTGTAAA
65230081 CTAAAGTATT
Statistics
Matches: 82, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
80 1 0.01
81 78 0.95
82 3 0.04
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.37
Consensus pattern (80 bp):
ACAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACT
TTGGTAATTTTACAA
Found at i:65231494 original size:20 final size:19
Alignment explanation
Indices: 65231448--65231494 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
65231438 ATAATTCATG
65231448 TTTAATTGCTGAATGGAGT
1 TTTAATTGCTGAATGGAGT
* *
65231467 TTTGAATTGGTAGAATTGAGT
1 TTT-AATTGCT-GAATGGAGT
65231488 TTTAATT
1 TTTAATT
65231495 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTAATTGCTGAATGGAGT
Found at i:65237902 original size:40 final size:40
Alignment explanation
Indices: 65237858--65237967 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
65237848 TTCACAATTT
* *
65237858 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65237898 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65237938 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
65237968 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:65245948 original size:40 final size:40
Alignment explanation
Indices: 65245904--65246013 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
65245894 TTCACAATTT
* *
65245904 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65245944 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65245984 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
65246014 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:65249373 original size:15 final size:15
Alignment explanation
Indices: 65249353--65249417 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
65249343 GTATCTTGGG
65249353 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
65249368 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
65249383 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
65249398 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
65249412 TTTCTT
1 TTTCTT
65249418 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
14 10 0.23
15 31 0.72
16 2 0.05
ACGTcount: A:0.09, C:0.15, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:65249385 original size:30 final size:30
Alignment explanation
Indices: 65249349--65249417 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
65249339 TATCGTATCT
65249349 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTTATCT-TGGATTTCTTTATTC
*
65249379 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTGGATTTCTTTATTC
*
65249409 -GGTTTTCTT
1 TGGGTTTCTT
65249418 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.14, G:0.17, T:0.59
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTGGATTTCTTTATTC
Found at i:65251957 original size:46 final size:46
Alignment explanation
Indices: 65251907--65252079 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
65251897 TGGTTGAGCA
65251907 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65251953 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
65251998 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
65252046 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65252080 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:65252063 original size:93 final size:93
Alignment explanation
Indices: 65251904--65252074 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
65251894 GGATGGTTGA
* *
65251904 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65251969 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
65251997 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65252062 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
65252075 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65259576 original size:47 final size:46
Alignment explanation
Indices: 65259459--65259631 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
65259449 GGATGGTTGA
65259459 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
65259506 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
65259549 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
65259599 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
65259632 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:65259628 original size:93 final size:92
Alignment explanation
Indices: 65259459--65259628 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
65259449 GGATGGTTGA
* *
65259459 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
65259524 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
65259551 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
65259616 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
65259629 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65263796 original size:29 final size:27
Alignment explanation
Indices: 65263764--65263863 Score: 92
Period size: 29 Copynumber: 3.5 Consensus size: 27
65263754 TCAATCACGA
*
65263764 ACACTTAGTGCCATGTGATTCAAGCCCGC
1 ACACTTAGTGCCAT-T-ATTCAAGCTCGC
* * *
65263793 ACACATAGTGCCATATAGTCCAAACTCGC
1 ACACTTAGTGCCAT-TA-TTCAAGCTCGC
*
65263822 ACACTTAGTGCCATACATTACAAGCTCGC
1 ACACTTAGTGCCAT-TATT-CAAGCTCGC
*
65263851 ACACTCAGTGCCA
1 ACACTTAGTGCCA
65263864 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (27 bp):
ACACTTAGTGCCATTATTCAAGCTCGC
Found at i:65271625 original size:40 final size:40
Alignment explanation
Indices: 65271570--65271714 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
65271560 CATTTGAATG
* **
65271570 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAATT
1 ATACCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTT
* *
65271610 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGGT
1 ATACCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTT
* * ** *
65271650 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATACCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTT
* *
65271690 ATATCCGGGCCAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCA
65271715 ATTGTGCAAG
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTT
Found at i:65271734 original size:80 final size:79
Alignment explanation
Indices: 65271574--65271777 Score: 210
Period size: 80 Copynumber: 2.5 Consensus size: 79
65271564 TGAATGATAC
* * * * * * *
65271574 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAATTATACCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTAGTTATATCCGGGCCAAGACCCGAAGGCAATTA
* ****
65271639 TGCTAGTTGGTAAAT
65 TGCAAGTCACCAAAT
* * *
65271654 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCCAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTAGTTATATCCGGGCCAAGACCCGAAGGCAATTA
65271719 TGCAAGTCACCAAAT
65 TGCAAGTCACCAAAT
* * * *
65271734 CTGGGTTAAGACCCAAAGGCAATTGTGCTTGTAGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTAGTTATATCCGG
65271778 TTGAATCCCG
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
79 2 0.02
80 96 0.95
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTAGTTATATCCGGGCCAAGACCCGAAGGCAATTAT
GCAAGTCACCAAAT
Found at i:65279699 original size:38 final size:38
Alignment explanation
Indices: 65279647--65279749 Score: 154
Period size: 38 Copynumber: 2.7 Consensus size: 38
65279637 GCATTGAATG
65279647 AACCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAT-TA
1 AACCGGGCTAAGTCCCGAAGGCATTTATGCTAGT-TGTA
*
65279685 TACCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGGTA
1 AACCGGGCTAAGTCCCGAAGGCATTTATGCTAGTT-GTA
*
65279724 AATCCGGGCTAAGACCCGAAGGCATT
1 AA-CCGGGCTAAGTCCCGAAGGCATT
65279750 CGTGCGAGTT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
37 1 0.02
38 33 0.56
39 3 0.05
40 22 0.37
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (38 bp):
AACCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGTA
Found at i:65279742 original size:40 final size:39
Alignment explanation
Indices: 65279649--65279787 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 39
65279639 ATTGAATGAA
*
65279649 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAT-TATA-
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGT-TGTATAT
* *
65279687 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGGTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTT-GTATAT
** *
65279727 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTG--TATAT
*
65279768 CCGGGCCAAGA-CCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
65279788 ATTGTGCAAG
Statistics
Matches: 89, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
37 1 0.01
38 32 0.36
39 4 0.04
40 38 0.43
41 14 0.16
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTTGTATAT
Found at i:65291156 original size:26 final size:27
Alignment explanation
Indices: 65291043--65291297 Score: 218
Period size: 27 Copynumber: 9.6 Consensus size: 27
65291033 GAAATAATCC
*
65291043 CGATTTGTAAAATTACTGAAGTACCC-
1 CGATTTGTAAAATTACTGAAATACCCT
* * **
65291069 CTAATTTTTAAAATTACCAAAATACCC-
1 C-GATTTGTAAAATTACTGAAATACCCT
* * *
65291096 CGGTTTATAAAATTA-TCAAAATACCC-
1 CGATTTGTAAAATTACT-GAAATACCCT
*
65291122 CTAATTTGTAAAATTACTGAAATACCCT
1 C-GATTTGTAAAATTACTGAAATACCCT
* *
65291150 CGA-TTGTGAAATTACTGAAATACACT
1 CGATTTGTAAAATTACTGAAATACCCT
65291176 CGATTTGTAAAATTATCT-AAATACCC-
1 CGATTTGTAAAATTA-CTGAAATACCCT
* * * * *
65291202 CAATTTATGAAATTACCGAAACACCCT
1 CGATTTGTAAAATTACTGAAATACCCT
* * **
65291229 CGATTTGTAAAATTACAGAAACACTTT
1 CGATTTGTAAAATTACTGAAATACCCT
* **
65291256 TGATTTGTAAAATTACCAAAATACCCT
1 CGATTTGTAAAATTACTGAAATACCCT
65291283 CGATTTGTAAAATTA
1 CGATTTGTAAAATTA
65291298 TCGATATACC
Statistics
Matches: 184, Mismatches: 36, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.01
26 65 0.35
27 114 0.62
28 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
CGATTTGTAAAATTACTGAAATACCCT
Found at i:65291162 original size:53 final size:53
Alignment explanation
Indices: 65291041--65291297 Score: 207
Period size: 53 Copynumber: 4.8 Consensus size: 53
65291031 TCGAAATAAT
* ** * * * **
65291041 CCCGATTTGTAAAATTACTGAAGTACCC-CTAATTTTTAAAATTACCAAAATAC
1 CCCGATTTATAAAATTACCAAAATACCCTC-GATTTGTAAAATTACTGAAATAC
* * *
65291094 CCCGGTTTATAAAATTATCAAAATACCC-CTAATTTGTAAAATTACTGAAATAC
1 CCCGATTTATAAAATTACCAAAATACCCTC-GATTTGTAAAATTACTGAAATAC
* * ** *
65291147 CCTCGA-TTGTGAAATTACTGAAATACACTCGATTTGTAAAATTATCT-AAATAC
1 CC-CGATTTATAAAATTACCAAAATACCCTCGATTTGTAAAATTA-CTGAAATAC
* * * * * *
65291200 CCCAATTTATGAAATTACCGAAACACCCTCGATTTGTAAAATTACAGAAACAC
1 CCCGATTTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATAC
*** *
65291253 TTTTGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTA
1 -CCCGATTTATAAAATTACCAAAATACCCTCGATTTGTAAAATTA
65291298 TCGATATACC
Statistics
Matches: 166, Mismatches: 32, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
52 3 0.02
53 122 0.73
54 41 0.25
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (53 bp):
CCCGATTTATAAAATTACCAAAATACCCTCGATTTGTAAAATTACTGAAATAC
Found at i:65291187 original size:80 final size:80
Alignment explanation
Indices: 65291045--65291297 Score: 264
Period size: 80 Copynumber: 3.2 Consensus size: 80
65291035 AATAATCCCG
* * * * * *
65291045 ATTTGTAAAATTACTGAAGTACCC-CTAATTTTTAAAATTACCA-AAATACCCCGGTTTATAAAA
1 ATTTGTAAAATTACTGAAATACCCTC-GATTTGTAAAATTA-CAGAAATACCTCGATTTGTAAAA
65291108 TTATCAAAATACCCCTA
64 TTATCAAAATACCCCTA
* *
65291125 ATTTGTAAAATTACTGAAATACCCTCGA-TTGTGAAATTACTGAAATACACTCGATTTGTAAAAT
1 ATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACAGAAATAC-CTCGATTTGTAAAAT
*
65291189 TATCTAAATACCCC-A
65 TATCAAAATACCCCTA
* * * * * * *
65291204 ATTTATGAAATTACCGAAACACCCTCGATTTGTAAAATTACAGAAACACTTTTGATTTGTAAAAT
1 ATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACAGAAATAC-CTCGATTTGTAAAAT
* *
65291269 TACCAAAATA-CCCTCG
65 TATCAAAATACCCCT-A
65291285 ATTTGTAAAATTA
1 ATTTGTAAAATTA
65291298 TCGATATACC
Statistics
Matches: 143, Mismatches: 24, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
78 1 0.01
79 43 0.30
80 87 0.61
81 12 0.08
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (80 bp):
ATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACAGAAATACCTCGATTTGTAAAATT
ATCAAAATACCCCTA
Found at i:65291309 original size:27 final size:26
Alignment explanation
Indices: 65291025--65291309 Score: 204
Period size: 27 Copynumber: 10.7 Consensus size: 26
65291015 TAATAAAGAG
*
65291025 AAATTATCGAAATAATCC-CGATTTGTA
1 AAATTA-CGAAAT-ACCCTCGATTTGTA
* * *
65291052 AAATTACTGAAGTACCC-CTAATTTTTA
1 AAATTAC-GAAATACCCTC-GATTTGTA
* * *
65291079 AAATTACCAAAATACCC-CGGTTTATA
1 AAATTA-CGAAATACCCTCGATTTGTA
* *
65291105 AAATTATCAAAATACCC-CTAATTTGTA
1 AAATTA-CGAAATACCCTC-GATTTGTA
*
65291132 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTAC-GAAATACCCTCGATTTGTA
*
65291158 AAATTACTGAAATACACTCGATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* * * *
65291185 AAATTATCTAAATACCC-CAATTTATG
1 AAATTA-CGAAATACCCTCGATTTGTA
*
65291211 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
* ** *
65291238 AAATTACAGAAACACTTTTGATTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
*
65291265 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTA-CGAAATACCCTCGATTTGTA
*
65291292 AAATTATCGATATACCCT
1 AAATTA-CGAAATACCCT
65291310 TATAGTGTAA
Statistics
Matches: 207, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
26 73 0.35
27 130 0.63
28 4 0.02
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGATTTGTA
Found at i:65291318 original size:27 final size:27
Alignment explanation
Indices: 65291261--65291376 Score: 101
Period size: 27 Copynumber: 4.3 Consensus size: 27
65291251 ACTTTTGATT
* * * *
65291261 TGTAAAATTACCAAAATACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* *
65291288 TGTAAAATTATCGATATACCCTTATAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
65291315 TGTAAATTTAT-GAAAATACCCTTGTAG
1 TGTAAAATTATCG-AAATACCCTTGTAG
* * *
65291342 TGTAAAATGATCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
65291369 GGTAAAAT
1 TGTAAAAT
65291377 GACTATTTTG
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 69 0.96
28 2 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:65291319 original size:54 final size:54
Alignment explanation
Indices: 65291103--65291376 Score: 168
Period size: 54 Copynumber: 5.1 Consensus size: 54
65291093 CCCCGGTTTA
* * *
65291103 TAAAATTATCAAAATACCC-CTAATTTGTAAAATTA-CTGAAATACCCTCGAT--TG
1 TAAAATTACCAAAATACCCTC-GATTTGTAAAATTATC-GAAATACCCT-TATAGTG
* ** * * ** * *
65291156 TGAAATTACTGAAATACACTCGATTTGTAAAATTATCTAAATACCCCAAT-TTA
1 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTATAGTG
* * * * ** *
65291209 TGAAATTACCGAAACACCCTCGATTTGTAAAATTA-CAGAAACACTTTTGAT-TTG
1 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTT-ATAGTG
*
65291263 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGATATACCCTTATAGTG
1 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTATAGTG
* ** * * * * * * *
65291317 TAAATTTATGAAAATACCCTTG-TAGTGTAAAATGATCGACATACCCCTGTAGGG
1 TAAAATTACCAAAATACCCTCGAT-TTGTAAAATTATCGAAATACCCTTATAGTG
65291371 TAAAAT
1 TAAAAT
65291377 GACTATTTTG
Statistics
Matches: 174, Mismatches: 39, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
52 3 0.02
53 76 0.44
54 94 0.54
55 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTATAGTG
Found at i:65291322 original size:80 final size:78
Alignment explanation
Indices: 65291103--65291322 Score: 228
Period size: 80 Copynumber: 2.7 Consensus size: 78
65291093 CCCCGGTTTA
*
65291103 TAAAATTATCAAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGAT-TGTGAAATTACTG
1 TAAAATTATCAAAATACCCC-AATTTGTAAAATTAC-GAAATACCCTCGATGTGT-AAATTACAG
*
65291167 AAATACACTCGATTTG
63 AAACACACTCGATTTG
* * * * *
65291183 TAAAATTATCTAAATACCCCAATTTATGAAATTACCGAAACACCCTCGATTTGTAAAATTACAGA
1 TAAAATTATCAAAATACCCCAATTTGTAAAATTA-CGAAATACCCTCGATGTGT-AAATTACAGA
** *
65291248 AACACTTTTGATTTG
64 AACACACTCGATTTG
* * * *
65291263 TAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGATATACCCT-TATAGTGTAAATT
1 TAAAATTATCAAAATACCC-CAATTTGTAAAATTA-CGAAATACCCTCGAT-GTGTAAATT
65291323 TATGAAAATA
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
79 25 0.22
80 67 0.58
81 24 0.21
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (78 bp):
TAAAATTATCAAAATACCCCAATTTGTAAAATTACGAAATACCCTCGATGTGTAAATTACAGAAA
CACACTCGATTTG
Found at i:65294229 original size:28 final size:28
Alignment explanation
Indices: 65294185--65294249 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
65294175 GTTGGAAGTA
* *
65294185 ATTGGGCCTGATAGGCCATATGAATGTG
1 ATTGGGCCTGATAGGCCATATGAACGAG
* *
65294213 ATTGGGCCTGATGGGCCATGTGAACGAG
1 ATTGGGCCTGATAGGCCATATGAACGAG
65294241 ATTGGGCCT
1 ATTGGGCCT
65294250 AAAGGGGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (28 bp):
ATTGGGCCTGATAGGCCATATGAACGAG
Found at i:65294597 original size:27 final size:27
Alignment explanation
Indices: 65294566--65294846 Score: 274
Period size: 27 Copynumber: 10.7 Consensus size: 27
65294556 TAATAAAGAG
*
65294566 AAATTATCGAAATAACCCT-AATTTGTA
1 AAATTATCGAAAT-ACCCTCGATTTGTA
* * *
65294593 AAATTATCGAAGTACCCCCAATTTGT-
1 AAATTATCGAAATACCCTCGATTTGTA
* *
65294619 -AA-TACCGAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
65294643 ATATTATTGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
65294670 AAATTATCGAAATA-CCTCGATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
65294696 AAATTACCGAAACA-CCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
65294722 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
65294749 AAATTATCGAAACACACTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
65294776 AAATTATCGAAATAACCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
65294803 AAATTATTGATATA-CCT-TATAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
65294829 AAATTATCGAAATACCCT
1 AAATTATCGAAATACCCT
65294847 TGTAGTGTAA
Statistics
Matches: 214, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
23 4 0.02
24 13 0.06
25 5 0.02
26 85 0.40
27 107 0.50
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:65294746 original size:53 final size:53
Alignment explanation
Indices: 65294566--65294846 Score: 245
Period size: 53 Copynumber: 5.3 Consensus size: 53
65294556 TAATAAAGAG
* * * *
65294566 AAATTATCGAAATAACCCT-AATTTGTAAAATTATCGAAGTAC-CCCCAATTTGT-
1 AAATTACCGAAAT-ACCCTCGATTTGTAAAATTATCGAA--ACACCTCGATTTGTA
* * * *
65294619 -AA-TACCGAAATACCCTCGA-TTGTGATATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACA-CCTCGATTTGTA
* * * *
65294670 AAATTATCGAAATA-CCTCGATTTGTGAAATTACCGAAACACCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCTCGATTTGTA
* *
65294722 AAATTACCGAAACACCCTCGATTTGTAAAATTATCGAAACACACTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACAC-CTCGATTTGTA
* * * * * * * *
65294776 AAATTATCGAAATAACCTCAATTTGTAAAATTATTGATATACCT-TATAGTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCTCGAT-TTGTA
*
65294829 AAATTATCGAAATACCCT
1 AAATTACCGAAATACCCT
65294847 TGTAGTGTAA
Statistics
Matches: 188, Mismatches: 30, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
50 27 0.14
51 9 0.05
52 35 0.19
53 72 0.38
54 44 0.23
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCTCGATTTGTA
Found at i:65294855 original size:27 final size:28
Alignment explanation
Indices: 65294624--65294877 Score: 131
Period size: 27 Copynumber: 9.5 Consensus size: 28
65294614 TTTGTAATAC
* * *
65294624 CGAAATACCCTCG-AT-TGTGATATTAT
1 CGAAATACCCTTGTATGTGTAAAATTAT
* * *
65294650 TGAAATACCCTCG-ATTTGTAAAATTAT
1 CGAAATACCCTTGTATGTGTAAAATTAT
* * * *
65294677 CGAAATA-CCTCG-ATTTGTGAAATTAC
1 CGAAATACCCTTGTATGTGTAAAATTAT
* ** * *
65294703 CGAAACA-CC-TCAATTTGTAAAATTAC
1 CGAAATACCCTTGTATGTGTAAAATTAT
* * *
65294729 CGAAACACCCTCG-ATTTGTAAAATTAT
1 CGAAATACCCTTGTATGTGTAAAATTAT
* * *
65294756 CGAAACACACTTG-ATTTGTAAAATTAT
1 CGAAATACCCTTGTATGTGTAAAATTAT
* ** *
65294783 CGAAATAACC-TCAATTTGTAAAATTAT
1 CGAAATACCCTTGTATGTGTAAAATTAT
* * *
65294810 TGATATA-CCTTATA-GTGTAAAATTAT
1 CGAAATACCCTTGTATGTGTAAAATTAT
*
65294836 CGAAATACCCTTGTA-GTGTAAAATGA-
1 CGAAATACCCTTGTATGTGTAAAATTAT
*
65294862 CTGACATACCCTTGTA
1 C-GAAATACCCTTGTA
65294878 GGGTAAATGA
Statistics
Matches: 191, Mismatches: 29, Indels: 15
0.81 0.12 0.06
Matches are distributed among these distances:
26 79 0.41
27 112 0.59
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (28 bp):
CGAAATACCCTTGTATGTGTAAAATTAT
Found at i:65294878 original size:27 final size:27
Alignment explanation
Indices: 65294799--65294890 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
65294789 AACCTCAATT
* * * *
65294799 TGTAAAATTATTGATATA-CCTTATAG
1 TGTAAAATGACTGAAATACCCTTGTAG
*
65294825 TGTAAAATTA-TCGAAATACCCTTGTAG
1 TGTAAAATGACT-GAAATACCCTTGTAG
*
65294852 TGTAAAATGACTGACATACCCTTGTAG
1 TGTAAAATGACTGAAATACCCTTGTAG
*
65294879 GGT-AAATGACTG
1 TGTAAAATGACTG
65294891 TTTTGCCCTT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
25 1 0.02
26 24 0.41
27 32 0.55
28 1 0.02
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (27 bp):
TGTAAAATGACTGAAATACCCTTGTAG
Found at i:65298448 original size:29 final size:29
Alignment explanation
Indices: 65298415--65298488 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
65298405 CCTTCGAGCT
65298415 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
65298444 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
65298473 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
65298489 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:65298449 original size:58 final size:58
Alignment explanation
Indices: 65298356--65298488 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
65298346 ATACTCGATT
* * * * *
65298356 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
65298414 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
65298472 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
65298489 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:65306325 original size:29 final size:29
Alignment explanation
Indices: 65306292--65306365 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
65306282 CCTTCGAGCT
65306292 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
65306321 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
65306350 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
65306366 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:65306326 original size:58 final size:58
Alignment explanation
Indices: 65306233--65306365 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
65306223 ATACTCGATT
* * * * *
65306233 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
65306291 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
65306349 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
65306366 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:65308766 original size:42 final size:42
Alignment explanation
Indices: 65308619--65308766 Score: 160
Period size: 42 Copynumber: 3.5 Consensus size: 42
65308609 TTTGTGTTAT
*
65308619 CGTGTAAGACCACGTCTGGGATGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGA-CACGTCTGGGATGTTGGCATCGA-TATTTGA-TTA
* *
65308663 TGTGTAAGACAACGTCTGGGATGTTGGCATC-ATATTTGATTT
1 CGTGTAAGAC-ACGTCTGGGATGTTGGCATCGATATTTGATTA
*
65308705 CGTGTAA-ACCCTGTCTGGGATAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACAC-GTCTGGGAT-GTTGGCATCGATATTTGATTA
* *
65308747 CATGTAAGACACGTTTGGGA
1 CGTGTAAGACACGTCTGGGA
65308767 CGTTTACATT
Statistics
Matches: 89, Mismatches: 9, Indels: 14
0.79 0.08 0.12
Matches are distributed among these distances:
40 1 0.01
41 18 0.20
42 33 0.37
43 9 0.10
44 28 0.31
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACACGTCTGGGATGTTGGCATCGATATTTGATTA
Found at i:65312887 original size:27 final size:26
Alignment explanation
Indices: 65312857--65312917 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
65312847 ATTTACTAAA
*
65312857 ATACCCTTAAGTATGAAAATTACCGTT
1 ATACCCTTAAGTAT-AAAATGACCGTT
* * *
65312884 ATACCCCTAAGTGTAAAGTGACCGTT
1 ATACCCTTAAGTATAAAATGACCGTT
65312910 ATATCCCT
1 ATA-CCCT
65312918 AGAGTAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 13 0.46
27 15 0.54
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (26 bp):
ATACCCTTAAGTATAAAATGACCGTT
Found at i:65312891 original size:28 final size:27
Alignment explanation
Indices: 65312860--65312917 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
65312850 TACTAAAATA
*
65312860 CCCTTAAGTATGAAAATTACCGTTATAC
1 CCCTTAAGTAT-AAAATGACCGTTATAC
* * *
65312888 CCC-TAAGTGTAAAGTGACCGTTATAT
1 CCCTTAAGTATAAAATGACCGTTATAC
65312914 CCCT
1 CCCT
65312918 AGAGTAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
26 16 0.64
27 6 0.24
28 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (27 bp):
CCCTTAAGTATAAAATGACCGTTATAC
Found at i:65313062 original size:28 final size:28
Alignment explanation
Indices: 65313022--65313111 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
65313012 GGAGGAAGCG
65313022 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
65313050 TTCTAGTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
65313077 TTCTGGTGGCTCTACCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
65313104 ATCTGGTG
1 TTCTGGTG
65313112 ACACTGTCAG
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
26 8 0.14
27 22 0.39
28 26 0.46
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:65313094 original size:27 final size:27
Alignment explanation
Indices: 65313021--65313136 Score: 130
Period size: 27 Copynumber: 4.3 Consensus size: 27
65313011 TGGAGGAAGC
65313021 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
65313048 GTTTCTAGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
* *
65313076 GTTCTGGTGGCTCTACCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * *
65313102 GTATCTGGTGAC-ACTGTCA-GAATATCT
1 GT-TCTGGTGGCTA-TGCCACAAATATCT
65313129 GTTCTGGT
1 GTTCTGGT
65313137 AGCCATGCTA
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
26 15 0.19
27 36 0.47
28 26 0.34
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:65318390 original size:17 final size:18
Alignment explanation
Indices: 65318348--65318396 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65318338 AGTTGAAAAG
65318348 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65318367 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65318384 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65318397 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65319285 original size:40 final size:40
Alignment explanation
Indices: 65319219--65319385 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
65319209 AAATTGAATG
* * *
65319219 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
65319258 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
65319298 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65319338 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65319378 ATATCCGG
1 ATATCCGG
65319386 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65326083 original size:17 final size:18
Alignment explanation
Indices: 65326041--65326089 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65326031 AGTTGAAAAG
65326041 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65326060 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65326077 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65326090 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65326978 original size:40 final size:40
Alignment explanation
Indices: 65326912--65327078 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
65326902 AAATTGAATG
* * *
65326912 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
65326951 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
65326991 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65327031 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65327071 ATATCCGG
1 ATATCCGG
65327079 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65341946 original size:27 final size:28
Alignment explanation
Indices: 65341876--65341964 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 28
65341866 GGAGGAAGCG
*
65341876 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTAT
*
65341904 TTCAGGTGGCTATGCCACAAATATCTAT
1 TTCTGGTGGCTATGCCACAAATATCTAT
* *
65341932 TT-TGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTAT
*
65341958 ATCTGGT
1 TTCTGGT
65341965 AACACTGTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
26 9 0.17
27 17 0.31
28 28 0.52
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTAT
Found at i:65343483 original size:42 final size:42
Alignment explanation
Indices: 65343424--65343545 Score: 165
Period size: 42 Copynumber: 2.9 Consensus size: 42
65343414 TAGGGTTACC
65343424 GAGACTAT-GTGTAAGACCATATCTGGGATATGGCATCAATAT
1 GAGACT-TCGTGTAAGACCATATCTGGGATATGGCATCAATAT
* *
65343466 GAGACTTCGTGTAAGACCATATCTGGGATATGGAATCGATAT
1 GAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATAT
* * * *
65343508 GAGATTTCGTGTAAAACCATAGCTGGGCTATTGGCATC
1 GAGACTTCGTGTAAGACCATATCTGGGATA-TGGCATC
65343546 GATACTAGAT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
41 1 0.01
42 64 0.90
43 6 0.08
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
GAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATAT
Found at i:65344747 original size:20 final size:20
Alignment explanation
Indices: 65344722--65344768 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
65344712 CAGGGACACA
*
65344722 GGCGTGTCCCAAGCTATACG
1 GGCGTGTCCCAAGCCATACG
*
65344742 GGCGTGTCTCAAGCCATACG
1 GGCGTGTCCCAAGCCATACG
65344762 GGCGTGT
1 GGCGTGT
65344769 GGCTCTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (20 bp):
GGCGTGTCCCAAGCCATACG
Found at i:65349528 original size:40 final size:40
Alignment explanation
Indices: 65349442--65349633 Score: 285
Period size: 40 Copynumber: 4.8 Consensus size: 40
65349432 TATTCGGATG
* *
65349442 ATATCCGGGCTAAGACCCGAAGGCGCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTTGTGCTAGTGACT
* * *
65349483 ATATCCGGGTTAAGTCCCGAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
65349523 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
65349564 ATATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
65349604 ATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT
65349634 ACGATTTGCT
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 78 0.57
41 58 0.43
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:65349582 original size:81 final size:81
Alignment explanation
Indices: 65349441--65349631 Score: 301
Period size: 81 Copynumber: 2.4 Consensus size: 81
65349431 TTATTCGGAT
** *
65349441 GATATCCGGGCTAAGACCCGAAGGCGCTTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
*
65349506 CATTTGCGCTAGTGAC
66 CATTTGCGCGAGTGAC
*
65349522 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAATTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
* *
65349587 CATTTGTGCGAGTTAC
66 CATTTGCGCGAGTGAC
* *
65349603 TATATCCGGGCTAAGTCCCGAAGGCATTT
1 GATATCCGGGCTAAGACCCGAAGGCATTT
65349632 GTACGATTTG
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 101 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (81 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
CATTTGCGCGAGTGAC
Found at i:65352669 original size:49 final size:49
Alignment explanation
Indices: 65352608--65352776 Score: 164
Period size: 49 Copynumber: 3.5 Consensus size: 49
65352598 ATGTGTCAAT
*
65352608 GTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAGAGCCAGC
1 GTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCCAGC
* * * *
65352657 GTAAGACTTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGC
* * * * * ** ** *
65352706 GTAAAACCTGTCTGGGACACGACAACGACTTTAAT-G-TGCTAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGC
65352753 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACC-TGTCTGGGACATGGC
65352777 GTCGGCATCT
Statistics
Matches: 98, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
47 16 0.16
48 15 0.15
49 67 0.68
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGC
Found at i:65352724 original size:142 final size:137
Alignment explanation
Indices: 65352469--65352724 Score: 289
Period size: 142 Copynumber: 1.8 Consensus size: 137
65352459 TGTCAGCCAG
* * * * * *
65352469 TGTAAGGCATGTCTAGGACATACATCGACATTGAGATGAGTGCTAGTGTAAGACATGTTTGGGAC
1 TGTAAGACATGTCTAGGACATACATCGACACTGAGATGAGAGCCAGCGTAAGACATGTCTGGGAC
** * ** *
65352534 TTTCATCGGCCTCGGGATATATAAGCTAGTGTAAGTCCTGTTTAGGACATGGCGTCAACTTGTTA
66 TGGCATCGGCCTC-GGATATATAAGCCAGTGTAAAACCTGTCTAGGACATGGCGTCAACTTGTTA
65352599 TGTGTCAA
130 TGTGTCAA
* * * *
65352607 TGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGCGTAAGACTTGTCTGG
1 TGTAAGACATGTCTAGGACAT-ACATCGACACTG--AGATGAGAGCCAGCGTAAGACATGTCTGG
*
65352672 GACATGGCATCGGCCTC-GATATATGAAAGCCAGTGTAAAACCTGTCTGGGACA
63 GAC-TGGCATCGGCCTCGGATATAT--AAGCCAGTGTAAAACCTGTCTAGGACA
65352725 CGACAACGAC
Statistics
Matches: 95, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
138 18 0.19
139 10 0.11
140 7 0.07
141 27 0.28
142 33 0.35
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (137 bp):
TGTAAGACATGTCTAGGACATACATCGACACTGAGATGAGAGCCAGCGTAAGACATGTCTGGGAC
TGGCATCGGCCTCGGATATATAAGCCAGTGTAAAACCTGTCTAGGACATGGCGTCAACTTGTTAT
GTGTCAA
Found at i:65362164 original size:15 final size:15
Alignment explanation
Indices: 65362142--65362179 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
65362132 TAAATTGGAT
65362142 TTTC-TTATCATGAA
1 TTTCTTTATCATGAA
* *
65362156 TTTCTTTATCTTGGA
1 TTTCTTTATCATGAA
65362171 TTTCTTTAT
1 TTTCTTTAT
65362180 TCTGGGCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.18, C:0.13, G:0.08, T:0.61
Consensus pattern (15 bp):
TTTCTTTATCATGAA
Found at i:65368489 original size:49 final size:49
Alignment explanation
Indices: 65368417--65368527 Score: 134
Period size: 49 Copynumber: 2.3 Consensus size: 49
65368407 TGTTGTGTGT
* * *
65368417 CAGTGTAAGACCTGTTTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGAGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
65368466 CAGTGTAAGGCTTGTCTGAGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGAGACATGGCATCGACCTCGATAGATGAAAGC
65368515 CAGTGTAAGACCT
1 CAGTGTAAGACCT
65368528 ATTTGGGACA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 1 0.02
49 50 0.98
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGAGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:65370626 original size:25 final size:25
Alignment explanation
Indices: 65370578--65370627 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
65370568 AATAAAATTT
* * *
65370578 CACAATAGACTCAATTGCATATATC
1 CACAATAGACTAAATTACAGATATC
*
65370603 CACAATAGACTAAATTATAGATATC
1 CACAATAGACTAAATTACAGATATC
65370628 ATTTATATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (25 bp):
CACAATAGACTAAATTACAGATATC
Found at i:65373349 original size:73 final size:73
Alignment explanation
Indices: 65373210--65373404 Score: 248
Period size: 73 Copynumber: 2.7 Consensus size: 73
65373200 AATCCATCTG
* * * * * * *
65373210 AAAACACACCAAATGCACATAAGAGCTCATCCACCTGATAACACACCAATTGCTTTCAAGACCTA
1 AAAACACGCCAAATGCTCATAAGAGCTAAACCACCCGATAACACACCAATTGCTCTCAAGAACTA
*
65373275 GTCCAACC
66 GTCCAAAC
* * * * *
65373283 TAAAGACGCCAAATGCTCATAAGAGCTTAACCACCCGATAACACGCTAATTGCTC-CTAAGAACT
1 AAAACACGCCAAATGCTCATAAGAGCTAAACCACCCGATAACACACCAATTGCTCTC-AAGAACT
65373347 AGTCCAAAC
65 AGTCCAAAC
*
65373356 AAAACATGCCAAATGCTCATAAGAGCTAAACCACCCGATAACACACCAA
1 AAAACACGCCAAATGCTCATAAGAGCTAAACCACCCGATAACACACCAA
65373405 AACAAGGAGT
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
72 1 0.01
73 102 0.99
ACGTcount: A:0.41, C:0.31, G:0.11, T:0.17
Consensus pattern (73 bp):
AAAACACGCCAAATGCTCATAAGAGCTAAACCACCCGATAACACACCAATTGCTCTCAAGAACTA
GTCCAAAC
Found at i:65376663 original size:25 final size:25
Alignment explanation
Indices: 65376629--65376681 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
65376619 TGCACCACAA
65376629 GGCCAGAGACACATCCGTGTGCCTT
1 GGCCAGAGACACATCCGTGTGCCTT
* * *
65376654 GGCCAGAGACACGTCTGTTTGCCTT
1 GGCCAGAGACACATCCGTGTGCCTT
65376679 GGC
1 GGC
65376682 TATGGGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (25 bp):
GGCCAGAGACACATCCGTGTGCCTT
Found at i:65377824 original size:47 final size:47
Alignment explanation
Indices: 65377772--65377946 Score: 122
Period size: 47 Copynumber: 3.7 Consensus size: 47
65377762 TATTCCGGAG
* *
65377772 TACTTATACCATGGCCTATAGCCAAATCAAGGTATCTCCTCTCAAAA
1 TACTTAAACCATGGCCTATAGCCAAATCAAGGTAACTCCTCTCAAAA
* * * * ** * ** * ** *
65377819 AACTTAAATCTTGGCTCGA-AGAAAAATCAAGATAACTTATCCCGGAG
1 TACTTAAACCATGGC-CTATAGCCAAATCAAGGTAACTCCTCTCAAAA
* *
65377866 TACTTATACCATGGTCC-GTAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACTTAAACCATGG-CCTATAGCCAAATCAAGGTAACTCCTCTCAAAA
* * *
65377913 TACCTAAATCATGG-CTCGTAGCCAAATCAAGGTA
1 TACTTAAACCATGGCCT-ATAGCCAAATCAAGGTA
65377947 TTATTTGCAC
Statistics
Matches: 91, Mismatches: 32, Indels: 10
0.68 0.24 0.08
Matches are distributed among these distances:
45 1 0.01
47 87 0.96
48 3 0.03
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (47 bp):
TACTTAAACCATGGCCTATAGCCAAATCAAGGTAACTCCTCTCAAAA
Found at i:65377940 original size:94 final size:94
Alignment explanation
Indices: 65377743--65377943 Score: 296
Period size: 94 Copynumber: 2.1 Consensus size: 94
65377733 CCATGGACCT
* * *
65377743 TAGCCAAATCAGGATAACTTATTCCGGAGTACTTATACCATGGCCTATAGCCAAATCAAGGTATC
1 TAGCCAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGCCTATAGCCAAATCAAGGTAAC
* *
65377808 TCCTCTCAAAAAACTTAAATCTTGGCTCG
66 TCCTCTCAAAAAACCTAAATCATGGCTCG
* ** *
65377837 AAGAAAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGTCC-GTAGCCAAATCAAGGTAA
1 TAGCCAAATCAAGATAACTTATCCCGGAGTACTTATACCATGG-CCTATAGCCAAATCAAGGTAA
*
65377901 CTCCTCTCAAAATACCTAAATCATGGCTCG
65 CTCCTCTCAAAAAACCTAAATCATGGCTCG
65377931 TAGCCAAATCAAG
1 TAGCCAAATCAAG
65377944 GTATTATTTG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 91 0.98
95 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (94 bp):
TAGCCAAATCAAGATAACTTATCCCGGAGTACTTATACCATGGCCTATAGCCAAATCAAGGTAAC
TCCTCTCAAAAAACCTAAATCATGGCTCG
Found at i:65379106 original size:13 final size:13
Alignment explanation
Indices: 65379088--65379112 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65379078 ACAAACGATA
65379088 AAATTTTCACACG
1 AAATTTTCACACG
65379101 AAATTTTCACAC
1 AAATTTTCACAC
65379113 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:65385835 original size:47 final size:47
Alignment explanation
Indices: 65385766--65385886 Score: 145
Period size: 47 Copynumber: 2.6 Consensus size: 47
65385756 AGTAAGTACA
* * * *
65385766 TATACCATGGCCCTTAGCCAAATCAAGATAACTT-ATCCCAGAGTAGC
1 TATACCATGGCCCGTAGCCAAATCAAGATAA-TTCATCCCAAAATACC
* * *
65385813 TATACCATGGCCCGTAGCCAAATCAAGGTAATTCCTCTCAAAATACC
1 TATACCATGGCCCGTAGCCAAATCAAGATAATTCATCCCAAAATACC
* *
65385860 TAAATCATGGCCCGTAGCCAAATCAAG
1 TATACCATGGCCCGTAGCCAAATCAAG
65385887 GTATTATTCG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 2 0.03
47 62 0.97
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (47 bp):
TATACCATGGCCCGTAGCCAAATCAAGATAATTCATCCCAAAATACC
Found at i:65386104 original size:25 final size:25
Alignment explanation
Indices: 65386075--65386126 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
65386065 TAAACAAATT
65386075 TTATGCAATATCAAAGCATATAACA
1 TTATGCAATATCAAAGCATATAACA
65386100 TTATGCAATATCAAAGCATATAACA
1 TTATGCAATATCAAAGCATATAACA
65386125 TT
1 TT
65386127 CATTTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (25 bp):
TTATGCAATATCAAAGCATATAACA
Found at i:65390063 original size:31 final size:29
Alignment explanation
Indices: 65390019--65390080 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
65390009 CATTTTCATA
*
65390019 TTTCATATCTCATAACACTGGGCCGAAGCCT
1 TTTCAAATCTCATAACA-T-GGCCGAAGCCT
* **
65390050 TTTCAAATTTCATATTATGGCCGAAGCCT
1 TTTCAAATCTCATAACATGGCCGAAGCCT
65390079 TT
1 TT
65390081 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 13 0.48
30 1 0.04
31 13 0.48
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (29 bp):
TTTCAAATCTCATAACATGGCCGAAGCCT
Found at i:65390323 original size:24 final size:24
Alignment explanation
Indices: 65390272--65390414 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
65390262 GCTTTATCAT
*
65390272 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
65390297 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
65390321 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
65390344 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
65390368 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
65390392 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
65390415 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:65390351 original size:47 final size:48
Alignment explanation
Indices: 65390272--65390413 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
65390262 GCTTTATCAT
* *
65390272 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
65390321 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
65390368 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
65390414 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:65390372 original size:71 final size:72
Alignment explanation
Indices: 65390271--65390414 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
65390261 TGCTTTATCA
*
65390271 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
65390336 GCCCTTT
66 GCCCTTT
* * **
65390343 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
65390406 AGCCCTTT
65 AGCCCTTT
65390414 T
1 T
65390415 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:65390489 original size:20 final size:20
Alignment explanation
Indices: 65390464--65390524 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
65390454 TTATGATTAC
65390464 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
65390484 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
65390504 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
65390524 A
1 A
65390525 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:65391874 original size:27 final size:27
Alignment explanation
Indices: 65391854--65392463 Score: 732
Period size: 27 Copynumber: 22.6 Consensus size: 27
65391844 AGGGTATTTT
*
65391854 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65391881 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
65391908 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65391935 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
65391961 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
65391988 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
65392015 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
65392042 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
65392069 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65392096 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65392123 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
65392150 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
65392177 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
65392204 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* *
65392231 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65392258 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65392285 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
65392312 AGTAATTCTGTAAATCTAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
65392339 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* * *
65392366 GGTAATTCTATAAATCGAGGATAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
65392393 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65392420 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65392447 GGTAATTCTATAAATCG
1 AGTAATTCTGTAAATCG
65392464 GGAGTACTTT
Statistics
Matches: 513, Mismatches: 55, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
26 26 0.05
27 481 0.94
28 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:65395556 original size:24 final size:24
Alignment explanation
Indices: 65395505--65395647 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
65395495 GCTTTATCAT
*
65395505 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
65395530 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
65395554 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
65395577 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
65395601 ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
65395625 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
65395648 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 23 0.21
24 74 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:65395584 original size:47 final size:48
Alignment explanation
Indices: 65395505--65395646 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 48
65395495 GCTTTATCAT
* *
65395505 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
65395554 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
* *
65395601 ATAACTGGGGTATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
65395647 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 43 0.50
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:65395605 original size:71 final size:72
Alignment explanation
Indices: 65395504--65395647 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
65395494 TGCTTTATCA
*
65395504 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
65395569 GCCCTTT
66 GCCCTTT
* * * **
65395576 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGTATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
65395639 AGCCCTTT
65 AGCCCTTT
65395647 T
1 T
65395648 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:65395722 original size:20 final size:20
Alignment explanation
Indices: 65395697--65395757 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
65395687 TTATGATTAC
65395697 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
65395717 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
65395737 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
65395757 A
1 A
65395758 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:65395832 original size:25 final size:25
Alignment explanation
Indices: 65395800--65395847 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
65395790 ATACATAAAC
* *
65395800 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
65395825 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
65395848 CATGGTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:65397108 original size:27 final size:27
Alignment explanation
Indices: 65397088--65397563 Score: 552
Period size: 27 Copynumber: 17.6 Consensus size: 27
65397078 AGGGTATTTT
*
65397088 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65397115 AGTAATTCTGTAAATCAAGGGCAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
65397142 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65397169 -GATAATTATGTAAATCTG-GGGTAAAAT
1 AG-TAATTCTGTAAATC-GAGGGTAAAAC
* * *
65397196 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
65397223 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
65397250 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
65397277 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
65397304 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65397331 -GATAATTCTATAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
*
65397358 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65397385 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
65397412 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
65397439 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65397466 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * ** *
65397493 GGTAATTTTACAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65397520 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
65397547 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
65397564 GGAGTACTTT
Statistics
Matches: 393, Mismatches: 42, Indels: 28
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.01
27 381 0.97
28 7 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:65412888 original size:49 final size:49
Alignment explanation
Indices: 65412816--65413053 Score: 271
Period size: 49 Copynumber: 4.8 Consensus size: 49
65412806 TAGCCGAAGC
* *
65412816 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
65412865 TATCTGGTACACGTAATAGCCTGCACTTAGTACTACACACAG-GACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA-TGCGACC-AAT
* * * * * *
65412915 CATCTGATACACGTAATAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* * *
65412966 TATCTGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *
65413015 TATCTGGCACATGTAGTAGCTTGCTCTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
65413054 CGTGACCTCA
Statistics
Matches: 158, Mismatches: 26, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
49 74 0.47
50 47 0.30
51 37 0.23
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:65413000 original size:101 final size:98
Alignment explanation
Indices: 65412832--65413060 Score: 271
Period size: 100 Copynumber: 2.3 Consensus size: 98
65412822 GTACGCATAG
* * * *
65412832 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAATAGCCTGCACTTAGTA
1 TAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACATAATAGCCTGCACTTAATA
*
65412897 CTACACACAG-GACCTAACCATCTGATACACGTAA
66 CTACACA-AGCGACC-AACCATCTGACACACGTAA
* * *
65412931 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCTGGTACGCATAGTAGCCTGCACTTAA
1 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACATAATAGCCTGCACTTAA
* ** * * *
65412996 TACTACACATGCGACCAATTATCTGGCACATGTAG
64 TACTACACAAGCGACCAACCATCTGACACACGTAA
* *
65413031 TAGCTTGCTCTTAGTACTACACACGTGACC
1 TAGCCTGCACTTAGTACTACACACGTGACC
65413061 TCACAATAGC
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
99 27 0.25
100 43 0.39
101 40 0.36
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (98 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACATAATAGCCTGCACTTAATA
CTACACAAGCGACCAACCATCTGACACACGTAA
Found at i:65414567 original size:49 final size:49
Alignment explanation
Indices: 65414495--65414743 Score: 264
Period size: 49 Copynumber: 4.9 Consensus size: 49
65414485 TAGCCGAAGC
* * *
65414495 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
65414544 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
65414594 CATCTGATATACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * * * *
65414645 TATCAGGTACGCATAGTAGCCTACACTTAGTCCTACACATGCGACGAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
65414694 TATCTGGTACACGATCGTAGTAGCCTGTACTTAGTACTACACACGTGACC
1 TATCTGGT--AC-A-CGTAGTAGCCTGCACTTAGTACTACACACGCGACC
65414744 TCACAATAGC
Statistics
Matches: 164, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 50 0.30
50 49 0.30
51 37 0.23
53 28 0.17
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:65414620 original size:50 final size:49
Alignment explanation
Indices: 65414508--65414743 Score: 211
Period size: 50 Copynumber: 4.7 Consensus size: 49
65414498 CTGGTACGCA
* * ** *
65414508 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTGATACACG
*
65414557 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATATACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCTGATACACG
* ** * * * *
65414607 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CCATCTGATACACG
* * * * * ** *
65414658 TAGTAGCCTACACTTAGTCCTACACATGCGACGAATTATCTGGTACACGATCG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCT-G-ATAC-A-CG
*
65414711 TAGTAGCCTGTACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
65414744 TCACAATAGC
Statistics
Matches: 151, Mismatches: 29, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
49 36 0.24
50 50 0.33
51 37 0.25
53 28 0.19
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTGATACACG
Found at i:65424248 original size:53 final size:53
Alignment explanation
Indices: 65424186--65424333 Score: 208
Period size: 53 Copynumber: 2.8 Consensus size: 53
65424176 ATAACTGATT
* * *
65424186 TCGCACACTTAGTGCTCAGAAAT-TAATTCACACACGTAGTGCTTAGATCCAAC
1 TCGCACACTTAGTGCTCAG-AATCAAATTCACACACATAGTGCTTAAATCCAAC
*
65424239 TCGCACACTTAGTGCTCAGTATCAAATTCACACACATAGTGCTTAAATCCAAC
1 TCGCACACTTAGTGCTCAGAATCAAATTCACACACATAGTGCTTAAATCCAAC
* * * *
65424292 TCGAACACTTAGTGCTCAGTATCAAATTCGCACACTTAGTGC
1 TCGCACACTTAGTGCTCAGAATCAAATTCACACACATAGTGC
65424334 ATCCCTTAAA
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
52 2 0.02
53 85 0.98
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (53 bp):
TCGCACACTTAGTGCTCAGAATCAAATTCACACACATAGTGCTTAAATCCAAC
Done.