Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 219 of 770
Found at i:65424251 original size:26 final size:27
Alignment explanation
Indices: 65424186--65424333 Score: 131
Period size: 27 Copynumber: 5.6 Consensus size: 27
65424176 ATAACTGATT
* * *
65424186 TCGCACACTTAGTGCTCAGAAAT-TAAT
1 TCGCACACTTAGTGCTCAG-TATCAAAC
* * * *
65424213 TCACACACGTAGTGCTTAG-ATCCAAC
1 TCGCACACTTAGTGCTCAGTATCAAAC
*
65424239 TCGCACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAC
* * * * *
65424266 TCACACACATAGTGCTTA-AATCCAAC
1 TCGCACACTTAGTGCTCAGTATCAAAC
* *
65424292 TCGAACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAC
65424319 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
65424334 ATCCCTTAAA
Statistics
Matches: 94, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
25 2 0.02
26 37 0.39
27 55 0.59
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
TCGCACACTTAGTGCTCAGTATCAAAC
Found at i:65425432 original size:13 final size:13
Alignment explanation
Indices: 65425414--65425438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65425404 CATGTTCTCT
65425414 CTTTTTTTTTATG
1 CTTTTTTTTTATG
65425427 CTTTTTTTTTAT
1 CTTTTTTTTTAT
65425439 TAAAACTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.80
Consensus pattern (13 bp):
CTTTTTTTTTATG
Found at i:65428901 original size:40 final size:39
Alignment explanation
Indices: 65428812--65429002 Score: 161
Period size: 40 Copynumber: 4.8 Consensus size: 39
65428802 TGAATGATGT
* ** * * *
65428812 CCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTCGTG-CGAGTTACTAAAC
* * *
65428852 CCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTACTAAAT
1 CCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAAC
* * *
65428892 CTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAC
*
65428931 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-
1 CCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTACTA-AAC
** * *
65428971 CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
65429003 CGTTATATCC
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 33 0.26
40 85 0.67
41 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAAC
Found at i:65429017 original size:79 final size:77
Alignment explanation
Indices: 65428811--65429027 Score: 195
Period size: 79 Copynumber: 2.7 Consensus size: 77
65428801 TTGAATGATG
* ** * * *
65428811 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAG-CGAGTCACTATATCCGG-TTAAG-TCCGAAGGCATT
65428875 CGTGCGAGTTACTAAA
62 CGTGCGAGTTACTAAA
* * * * *
65428891 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGT-CCGAAGGCATTCG
65428956 TGCGAGTTACTATAA
64 TGCGAGTTACTA-AA
** ** *
65428971 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTT-AAGTCCGAAG
65429028 ATACGTGATT
Statistics
Matches: 113, Mismatches: 18, Indels: 13
0.78 0.12 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.57
80 48 0.42
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGTCCGAAGGCATTCGTG
CGAGTTACTAAA
Found at i:65441756 original size:40 final size:38
Alignment explanation
Indices: 65441712--65441864 Score: 146
Period size: 40 Copynumber: 3.9 Consensus size: 38
65441702 AAGTGACTAT
* *
65441712 ATCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAA
1 ATCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAAT-A
* * *
65441752 ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATA
*
65441790 ATCCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA
1 AT-CCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTA--ATA
** * *
65441832 A-CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
65441865 CGTTATATCC
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
38 3 0.03
39 30 0.32
40 59 0.62
42 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (38 bp):
ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATA
Found at i:65441812 original size:79 final size:81
Alignment explanation
Indices: 65441673--65441864 Score: 225
Period size: 79 Copynumber: 2.4 Consensus size: 81
65441663 TTGAATGATG
** *
65441673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTGACTATATCCGGACTAAGATCCGAAGGCATT
65441737 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
65441753 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT-CCGGACTAAGAT-CCGAAGGCAT
*
65441815 TCGTGCGAGTTACTATAA
64 TCGTGCGAGTTAATATAA
** *
65441833 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
65441865 CGTTATATCC
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 55 0.57
80 39 0.40
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:65441879 original size:79 final size:77
Alignment explanation
Indices: 65441673--65441889 Score: 197
Period size: 79 Copynumber: 2.7 Consensus size: 77
65441663 TTGAATGATG
* ** * * *
65441673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAG-CGAGTCACTATATCCGG-TTAAG-TCCGAAGGCATT
65441737 CGTGCGAGTTAATAAA
62 CGTGCGAGTTAATAAA
* *
65441753 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATAT-CC-GGTTAAGT-CCGAAGGCATTC
*
65441817 GTGCGAGTTACTATAA
63 GTGCGAGTTAATA-AA
** ** *
65441833 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTT-AAGTCCGAAG
65441890 ATACGTGATT
Statistics
Matches: 116, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 63 0.54
80 48 0.41
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGTCCGAAGGCATTCGTG
CGAGTTAATAAA
Found at i:65444990 original size:28 final size:28
Alignment explanation
Indices: 65444921--65445021 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
65444911 GACAAGATTG
* * * *
65444921 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
65444951 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65444979 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
65445008 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65445022 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65452946 original size:28 final size:28
Alignment explanation
Indices: 65452877--65452977 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
65452867 GACAAGATTG
* * * *
65452877 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
65452907 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
65452935 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
65452964 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65452978 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65458703 original size:12 final size:12
Alignment explanation
Indices: 65458686--65458716 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
65458676 TTACTGCCAA
65458686 TCTTGAAAATCT
1 TCTTGAAAATCT
65458698 TCTTGAAAATCT
1 TCTTGAAAATCT
65458710 TCTTGAA
1 TCTTGAA
65458717 TCTCCACGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (12 bp):
TCTTGAAAATCT
Found at i:65461396 original size:15 final size:16
Alignment explanation
Indices: 65461376--65461408 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
65461366 GACTATCAGT
*
65461376 TTTTTCTATTAA-TCC
1 TTTTTCTAATAATTCC
65461391 TTTTTCTAATAATTCC
1 TTTTTCTAATAATTCC
65461407 TT
1 TT
65461409 GATTTGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTTCTAATAATTCC
Found at i:65462903 original size:22 final size:21
Alignment explanation
Indices: 65462873--65462974 Score: 85
Period size: 19 Copynumber: 5.2 Consensus size: 21
65462863 TATAAATTAA
*
65462873 ATCTCCAAGATTTCAAGATCAT
1 ATCTCCAAGATTGC-AGATCAT
* *
65462895 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTGCAGATCAT
*
65462916 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTGCAGATCAT
*
65462935 ATCT--AAGATTG--TATCAT
1 ATCTCCAAGATTGCAGATCAT
*
65462952 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTGCAGATCAT
65462971 ATCT
1 ATCT
65462975 AAGACTGCAT
Statistics
Matches: 75, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.23
19 36 0.48
21 10 0.13
22 12 0.16
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (21 bp):
ATCTCCAAGATTGCAGATCAT
Found at i:65462925 original size:19 final size:19
Alignment explanation
Indices: 65462890--65462987 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
65462880 AGATTTCAAG
65462890 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
65462911 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65462930 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
65462947 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
65462966 ATCATATCTAAGACTGCAT
1 ATCATATCTAAGATTGCAT
65462985 ATC
1 ATC
65462988 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:65462932 original size:14 final size:15
Alignment explanation
Indices: 65462912--65462968 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
65462902 AGATTGCATA
65462912 TCATATCTAAGATTG
1 TCATATCTAAGATTG
65462927 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
65462946 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
65462963 -CATATC
1 TCATATC
65462969 ATATCTAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:65462954 original size:36 final size:37
Alignment explanation
Indices: 65462890--65462987 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
65462880 AGATTTCAAG
65462890 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
65462930 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
*
65462966 ATCATATCTAAGACTGCATATC
1 ATCATATCTAAGATTG-ATATC
65462988 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:65463934 original size:84 final size:84
Alignment explanation
Indices: 65463828--65464365 Score: 784
Period size: 84 Copynumber: 6.4 Consensus size: 84
65463818 TCTGCTATAC
* * * *
65463828 TTTAACTTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TCTTTGATCTACTCCACTACTGCTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTT
* *
65463892 AGGGAGATAAGATCCGCAAT
65 AGGGAGATAAGATCTGCAAA
* *
65463912 TTTGACCTGTTACCCTATTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
65463977 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* *
65463996 TTTAACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCGTCATCGATCTGCTCCGCTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGC
*
65464061 TTAGGGAGATAAGATCTGCGAA
63 TTAGGGAGATAAGATCTGCAAA
* *
65464083 --T---CTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
65464143 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * *
65464162 TTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTGCTCCACTACTGCTAA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
65464227 GGGAGATAAGATCTACAAA
66 GGGAGATAAGATCTGCAAA
* * *
65464246 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGCCTTCGATCTGCTCCACTACTGCTAA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
65464311 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * *
65464330 -TTAACTTGTTACCCTACTGTTTAGGGGCTTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
65464366 CTGAATTTTG
Statistics
Matches: 414, Mismatches: 31, Indels: 19
0.89 0.07 0.04
Matches are distributed among these distances:
79 39 0.09
81 2 0.00
82 35 0.08
83 33 0.08
84 263 0.64
85 2 0.00
87 40 0.10
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCAAA
Found at i:65463935 original size:43 final size:43
Alignment explanation
Indices: 65463883--65464024 Score: 132
Period size: 43 Copynumber: 3.3 Consensus size: 43
65463873 ATCTACTCCA
65463883 CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
* * * * * *
65463926 CTATTGCTTAGGG-GATTAAG--GCG-AGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCCGCAAT-TTTGACCTGTTACC
* * *
65463966 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
65464010 CTACTGCTTAAGGGA
1 CTACTGCTT-AGGGA
65464025 TTAAGGCGAG
Statistics
Matches: 75, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
40 4 0.05
41 26 0.35
42 4 0.05
43 33 0.44
44 8 0.11
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCCGCAATTTTGACCTGTTACC
Found at i:65464277 original size:250 final size:250
Alignment explanation
Indices: 65463832--65464366 Score: 808
Period size: 250 Copynumber: 2.1 Consensus size: 250
65463822 CTATACTTTA
* *
65463832 ACTTGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCTTTGATCTACTCCACTACTGCTTAGGGA
1 ACTTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTACTCCACTACTGCTTAGGGA
* * ** *
65463897 GATAAGATCCGCAATTTTGACCTGTTACCCTATTGCTTAGGGGATTAAGGCGAGTCTTCGATCTG
66 GATAAGATCCGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTG
* *
65463962 CTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAAGGGATT
131 CTCCACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAAGGGATT
* * * *
65464027 AAGGCGAGTCGTCATCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCGAA-T
196 AAGACGAG-C--CATCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGCAAATT
* * *
65464084 -C-TGTTACCCTACTGCTTAAGGGATTAAGGCG-AGTCTTCGATCTGCTCTACTACTGCTTAGGG
1 ACTTGTTACCCTACTGCTTAGGGGATTAAGGCGCA-TCTTCGATCTACTCCACTACTGCTTAGGG
*
65464146 AGATAAGATCTGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCT
65 AGATAAGATCCGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCT
*
65464211 GCTCCACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGAT
130 GCTCCACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAAGGGAT
*
65464276 TAAGACGAGCCTTCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGCAAATT
195 TAAGACGAGCCATCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGCAAATT
* *
65464332 AACTTGTTACCCTACTGTTTAGGGGCTTAAGGCGC
1 -ACTTGTTACCCTACTGCTTAGGGGATTAAGGCGC
65464367 TGAATTTTGT
Statistics
Matches: 255, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
247 40 0.16
248 1 0.00
249 2 0.01
250 184 0.72
251 28 0.11
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (250 bp):
ACTTGTTACCCTACTGCTTAGGGGATTAAGGCGCATCTTCGATCTACTCCACTACTGCTTAGGGA
GATAAGATCCGCAAATTTAACCTGTTACCCTACCGCTTAGGGGATTAAAGCGAGTCTTCGATCTG
CTCCACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACCCTACTGCTTAAGGGATT
AAGACGAGCCATCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTGCAAATT
Found at i:65464280 original size:43 final size:43
Alignment explanation
Indices: 65464133--65464355 Score: 133
Period size: 41 Copynumber: 5.3 Consensus size: 43
65464123 ATCTGCTCTA
*
65464133 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
* * * *** ** * *
65464176 CTACCGCTTAGGG-GATTAA-AGCGA-GTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCTACAAATTTAACCTGTTACC
*
65464216 ACTACTGCTAAGGGAGATAAGATCTACAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
* * ** * *
65464260 CTACTGCTTAGGG-GATTAAGA-CGAGC--CTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCTA-CAAATTTAACCTGTTACC
* * *
65464300 ACTACTGCTAAGGGAGATAAGATCTGCAAA-TTAACTTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
*
65464343 CTACTGTTTAGGG
1 CTACTGCTTAGGG
65464356 GCTTAAGGCG
Statistics
Matches: 126, Mismatches: 40, Indels: 29
0.65 0.21 0.15
Matches are distributed among these distances:
40 4 0.03
41 46 0.37
42 32 0.25
43 42 0.33
44 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTACC
Found at i:65464321 original size:41 final size:42
Alignment explanation
Indices: 65464041--65464323 Score: 121
Period size: 41 Copynumber: 6.9 Consensus size: 42
65464031 CGAGTCGTCA
* *
65464041 TCGATCTGCTCCGCTACTGCTTAGGGAGATAAGAT-----CT
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCGAGCCT
* * * * *
65464078 GCGAATCTGTTACC-CTACTGCTTAAGGGA-TTAAG-GCGAGTCT
1 TCG-ATCTGCT-CCACTACTGC-TAAGGGAGATAAGATCGAGCCT
* * **
65464120 TCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCA-AAT
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATC-G-AGCCT
** * * * * * *
65464163 TTAACCTGTTACC-CTACCGCTTAGGG-GATTAA-AGCGAGTCT
1 TCGATCTGCT-CCACTACTGCTAAGGGAGA-TAAGATCGAGCCT
* *
65464204 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCTA-CAAAT
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCGAGC--CT
** * * *
65464247 TTAACCTGTTACC-CTACTGCTTAGGG-GATTAAGA-CGAGCCT
1 TCGATCTGCT-CCACTACTGCTAAGGGAGA-TAAGATCGAGCCT
65464288 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATC
1 TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATC
65464324 TGCAAATTAA
Statistics
Matches: 175, Mismatches: 44, Indels: 49
0.65 0.16 0.18
Matches are distributed among these distances:
37 2 0.01
38 17 0.10
39 8 0.05
40 12 0.07
41 63 0.36
42 21 0.12
43 48 0.27
44 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (42 bp):
TCGATCTGCTCCACTACTGCTAAGGGAGATAAGATCGAGCCT
Found at i:65465326 original size:6 final size:6
Alignment explanation
Indices: 65465317--65465357 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
65465307 ATTTTTTATT
65465317 TTTTTA TTTTTA TTTTTA TTTTT- TTATTT- TTCTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT-TTTA TT-TTTA TTTTT
65465358 CCTTTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 2 0.06
6 28 0.88
7 2 0.06
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:65465328 original size:14 final size:13
Alignment explanation
Indices: 65465308--65465347 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 13
65465298 GGCCTCTCCA
65465308 TTTTTTATTTTTT
1 TTTTTTATTTTTT
65465321 TATTTTTATTTTTAT
1 T-TTTTTATTTTT-T
65465336 TTTTTTATTTTT
1 TTTTTTATTTTT
65465348 CTTTATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 1 0.04
14 22 0.88
15 2 0.08
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTT
Found at i:65465334 original size:20 final size:20
Alignment explanation
Indices: 65465309--65465347 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
65465299 GCCTCTCCAT
65465309 TTTTTATTTTTTTATTTTTA
1 TTTTTATTTTTTTATTTTTA
65465329 TTTTTATTTTTTTATTTTT
1 TTTTTATTTTTTTATTTTT
65465348 CTTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTATTTTTTTATTTTTA
Found at i:65465362 original size:11 final size:10
Alignment explanation
Indices: 65465311--65465367 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
65465301 CTCTCCATTT
65465311 TTTA-TTTT-
1 TTTATTTTTC
*
65465319 TTTATTTTTA
1 TTTATTTTTC
*
65465329 TTT-TTATTTT
1 TTTATT-TTTC
65465339 TTTATTTTTC
1 TTTATTTTTC
65465349 TTTATTTTTCC
1 TTTATTTTT-C
65465360 TTT-TTTTT
1 TTTATTTTT
65465368 TGAAATAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
8 4 0.10
9 6 0.14
10 26 0.62
11 6 0.14
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTATTTTTC
Found at i:65470525 original size:26 final size:26
Alignment explanation
Indices: 65470496--65470601 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
65470486 TGATACAAAT
65470496 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65470522 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
65470546 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65470572 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65470598 TGAT
1 TGAT
65470602 GGGAATTTAA
Statistics
Matches: 78, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
24 9 0.12
25 30 0.38
26 39 0.50
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65470550 original size:50 final size:52
Alignment explanation
Indices: 65470496--65470601 Score: 198
Period size: 50 Copynumber: 2.1 Consensus size: 52
65470486 TGATACAAAT
65470496 TGATAATGGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
65470546 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
65470598 TGAT
1 TGAT
65470602 GGGAATTTAA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 33 0.61
51 15 0.28
52 6 0.11
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:65473591 original size:36 final size:38
Alignment explanation
Indices: 65473533--65473605 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
65473523 AGATTACAAG
*
65473533 ATCATATCTTCAATATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
65473571 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
65473606 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 1 0.03
38 8 0.24
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.40
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:65473594 original size:19 final size:19
Alignment explanation
Indices: 65473533--65473611 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
65473523 AGATTACAAG
*
65473533 ATCATATCTTCAATATTGCAT
1 ATCATATC-T-AAGATTGCAT
65473554 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
65473571 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65473590 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65473609 ATC
1 ATC
65473612 CTTAAATATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:65474223 original size:84 final size:83
Alignment explanation
Indices: 65474049--65474577 Score: 676
Period size: 84 Copynumber: 6.3 Consensus size: 83
65474039 AGCATCTTGG
* * * ** *
65474049 ACCCTACTACTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGTTACTACTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
*
65474112 AGATCTACAAGTTTAACCTGTT
63 AGATCTGCAA-TTTAACCTGTT
* * * *
65474134 ACCCTACTGCTTAGGGGATTAAGACGGGTCTTCGATCTGCTCCACTATTGCTTAGGGGGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
65474199 TCTGCAGATTTAACTTGTT
66 TCTGCA-ATTTAACCTGTT
* * * * * * *
65474218 ACCCTACTGTTTAAGGGATTAAGGTGAGTCGTCATCAATCCGTTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
65474283 AGATCTGC-A---AACCTGTT
63 AGATCTGCAATTTAACCTGTT
* * *
65474300 ACCCTACTGCTTGGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
65474365 TCTGCAAATTTAACCTGTT
66 TCTGC-AATTTAACCTGTT
*
65474384 ACCCTA-TCGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ACCCTACT-GCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
65474448 ATCTGCGAATTTAACCTGTT
65 ATCTGC-AATTTAACCTGTT
*
65474468 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
65474533 TCTACAAATTTAACCTGTT
66 TCTGC-AATTTAACCTGTT
65474552 ACCCTACTGCTTAGGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
65474578 CTGAATTTTG
Statistics
Matches: 391, Mismatches: 40, Indels: 27
0.85 0.09 0.06
Matches are distributed among these distances:
79 35 0.09
81 2 0.01
82 56 0.14
83 3 0.01
84 236 0.60
85 26 0.07
87 33 0.08
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (83 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAATTTAACCTGTT
Found at i:65474420 original size:250 final size:247
Alignment explanation
Indices: 65474049--65474577 Score: 697
Period size: 250 Copynumber: 2.1 Consensus size: 247
65474039 AGCATCTTGG
* * * * **
65474049 ACCCTACTACTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGTTACTACTTAGGGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCAATCTGCTCCACTACTACTTAGGGATAAG
* *
65474114 ATCTACAAGTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGGGTCTTCGATCTGCTCCAC
63 ATCTACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCAC
* * * * *
65474179 TATTGCTTAGGGGGATAAGATCTGC-AGATTTAACTTGTTACCCTACTGTTTAAGGGATTAAGGT
128 TACTGCTTAGGGAGATAAGATCTGCGA-ATTTAACCTGTTACCCTACTGCTTAAGGGATTAAGGC
* * * *
65474243 GAGTCGTCATCAATCCGTTCCGCTACTGCTTAGGGAGATAAGATCTGC-A-AACCTGTT
192 GAGTC-T--TCAATCCGCTCCACTACTGCTTAAGGAGATAAGATCTACAATAACCTGTT
* * *
65474300 ACCCTACTGCTTGGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTACTTA-GG-GATAAGA
*
65474365 TCTGCAAATTTAACCTGTTACCCTA-TCGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCAC
64 TCTACAAATTTAACCTGTTACCCTACT-GCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCAC
*
65474429 TACTGCTTAGGGAGATAAGATCTGCGAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
128 TACTGCTTAGGGAGATAAGATCTGCGAATTTAACCTGTTACCCTACTGCTTAAGGGATTAAGGCG
* *
65474494 AGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAAATTTAACCTGTT
193 AGTCTTCAATCCGCTCCACTACTGCTTAAGGAGATAAGATCTAC-AA--TAACCTGTT
65474552 ACCCTACTGCTTAGGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
65474578 CTGAATTTTG
Statistics
Matches: 244, Mismatches: 25, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
247 33 0.14
248 23 0.09
249 5 0.02
250 127 0.52
251 23 0.09
252 33 0.14
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (247 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTACTTAGGGATAAGATC
TACAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCACTAC
TGCTTAGGGAGATAAGATCTGCGAATTTAACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGT
CTTCAATCCGCTCCACTACTGCTTAAGGAGATAAGATCTACAATAACCTGTT
Found at i:65474440 original size:41 final size:41
Alignment explanation
Indices: 65474137--65474521 Score: 167
Period size: 41 Copynumber: 9.2 Consensus size: 41
65474127 ACCTGTTACC
* *
65474137 CTACTGCTTAGGGGATTAAGACGGGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGACGAGTCTTCAATCTGCTCCA
* *
65474178 CTATTGCTTAGGGGGA-TAAGATCTGCAGAT-TT-AA-CTTGTTACC-
1 CTACTGCTTA-GGGGATTAAGA-C-G-AG-TCTTCAATC-TGCT-CCA
* * ** * * *
65474221 CTACTGTTTAAGGGATTAAGGTGAGTCGTCATCAATCCGTTCCG
1 CTACTGCTTAGGGGATTAAGACGAGTC-T--TCAATCTGCTCCA
* * *
65474265 CTACTGCTTAGGGAGA-T-A-A-GA-TCTGCAAACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAGACGAGTCTTC-AATCTGCT-CCA
* *
65474303 CTACTGCTTGGGGGATTAAGGCGAGTCTTCAATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGACGAGTCTTCAATCTGCTCCA
* * * *
65474344 CTACTGCTTAGGGAGA-TAATATCTGCAAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAGA-C-G--AGTCTTCAATCTGCT-CCA
*
65474387 CTA-TCGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCA
1 CTACT-GCTTAGGGGATTAAGACGAGTCTTCAATCTGCTCCA
* ** * * *
65474428 CTACTGCTTAGGGAGA-TAAGATCTGCGAATTTAACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAGA-C-GAGTCTTCAATCTGCT-CCA
* *
65474471 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGACGAGTCTTCAATCTGCTCCA
65474512 CTACTGCTTA
1 CTACTGCTTA
65474522 AGGAGATAAG
Statistics
Matches: 255, Mismatches: 47, Indels: 84
0.66 0.12 0.22
Matches are distributed among these distances:
37 3 0.01
38 19 0.07
39 7 0.03
40 12 0.05
41 82 0.32
42 29 0.11
43 69 0.27
44 28 0.11
45 6 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (41 bp):
CTACTGCTTAGGGGATTAAGACGAGTCTTCAATCTGCTCCA
Found at i:65475535 original size:1 final size:1
Alignment explanation
Indices: 65475524--65475601 Score: 57
Period size: 1 Copynumber: 78.0 Consensus size: 1
65475514 GGCCTCTCCA
* * * * * * * * *
65475524 TTTTTTCTTTTTTCTTTTTTCTTTTTTTTATTTTTCTTTTTTTTCTCTTTTTCTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
**
65475589 CCTTTTTTTTTTT
1 TTTTTTTTTTTTT
65475602 GAAATAGAAG
Statistics
Matches: 57, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:65475536 original size:7 final size:7
Alignment explanation
Indices: 65475524--65475601 Score: 79
Period size: 7 Copynumber: 10.7 Consensus size: 7
65475514 GGCCTCTCCA
65475524 TTTTTTC
1 TTTTTTC
65475531 TTTTTTC
1 TTTTTTC
65475538 TTTTTTC
1 TTTTTTC
*
65475545 TTTTTTT
1 TTTTTTC
65475552 TATTTTTC
1 T-TTTTTC
65475560 TTTTTTTTC
1 --TTTTTTC
65475569 TCTTTTTC
1 T-TTTTTC
65475577 TTTTCTT-
1 TTTT-TTC
*
65475584 TTTTTCC
1 TTTTTTC
65475591 TTTTTT-
1 TTTTTTC
65475597 TTTTT
1 TTTTT
65475602 GAAATAGAAG
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
6 6 0.10
7 34 0.56
8 14 0.23
9 6 0.10
10 1 0.02
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Found at i:65475549 original size:22 final size:21
Alignment explanation
Indices: 65475524--65475601 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 21
65475514 GGCCTCTCCA
*
65475524 TTTTTTCTTTTTTCTTTTTTC
1 TTTTTTTTTTTTTCTTTTTTC
65475545 TTTTTTTTATTTTTCTTTTTT-
1 TTTTTTTT-TTTTTCTTTTTTC
*
65475566 TTCTCTTTTTCTTTTCTTTTTTTC
1 TT-T-TTTTTTTTTTC-TTTTTTC
*
65475590 CTTTTTTTTTTT
1 TTTTTTTTTTTT
65475602 GAAATAGAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
21 9 0.19
22 26 0.54
23 12 0.25
24 1 0.02
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (21 bp):
TTTTTTTTTTTTTCTTTTTTC
Found at i:65475586 original size:11 final size:10
Alignment explanation
Indices: 65475524--65475599 Score: 77
Period size: 10 Copynumber: 7.6 Consensus size: 10
65475514 GGCCTCTCCA
65475524 TTTTTTCTTT
1 TTTTTTCTTT
65475534 TTTCTTT-TTT
1 TTT-TTTCTTT
*
65475544 CTTTTT-TTT
1 TTTTTTCTTT
*
65475553 ATTTTTCTTT
1 TTTTTTCTTT
65475563 TTTTTCTCTTT
1 TTTTT-TCTTT
65475574 TTCTTTTC-TT
1 TT-TTTTCTTT
*
65475584 TTTTTCCTTT
1 TTTTTTCTTT
65475594 TTTTTT
1 TTTTTT
65475600 TTGAAATAGA
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
9 15 0.27
10 26 0.46
11 12 0.21
12 3 0.05
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:65477346 original size:40 final size:40
Alignment explanation
Indices: 65477301--65477467 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
65477291 CGGAATATAA
65477301 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65477341 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
65477381 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65477421 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65477460 CCGGATAT
1 CCGGATAT
65477468 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65477451 original size:80 final size:79
Alignment explanation
Indices: 65477301--65477467 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
65477291 CGGAATATAA
* *
65477301 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
65477366 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
65477381 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
65477443 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
65477460 CCGGATAT
1 CCGGATAT
65477468 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:65478315 original size:17 final size:19
Alignment explanation
Indices: 65478292--65478337 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65478282 AAGAAGCATG
65478292 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65478310 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65478328 AATCATGCTC
1 AATCATGCTC
65478338 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65485346 original size:40 final size:40
Alignment explanation
Indices: 65485301--65485467 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
65485291 CGGAATATAA
65485301 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65485341 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
65485381 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65485421 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65485460 CCGGATAT
1 CCGGATAT
65485468 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65485451 original size:80 final size:79
Alignment explanation
Indices: 65485301--65485467 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
65485291 CGGAATATAA
* *
65485301 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
65485366 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
65485381 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
65485443 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
65485460 CCGGATAT
1 CCGGATAT
65485468 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:65486315 original size:17 final size:19
Alignment explanation
Indices: 65486292--65486337 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65486282 AAGAAGCATG
65486292 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65486310 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65486328 AATCATGCTC
1 AATCATGCTC
65486338 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65489309 original size:21 final size:20
Alignment explanation
Indices: 65489280--65489318 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65489270 GAAACCTAAC
65489280 CATATCCAACCGTATACACCCT
1 CATATCCAACC-T-TACACCCT
65489302 CATA-CCAACCTTACACC
1 CATATCCAACCTTACACC
65489319 GTGTGGGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 6 0.35
22 4 0.24
ACGTcount: A:0.33, C:0.44, G:0.03, T:0.21
Consensus pattern (20 bp):
CATATCCAACCTTACACCCT
Found at i:65489423 original size:27 final size:27
Alignment explanation
Indices: 65489381--65489539 Score: 200
Period size: 27 Copynumber: 5.9 Consensus size: 27
65489371 GCGAGGCTGC
* *
65489381 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
65489408 CAGATATTGTAGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
65489434 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
65489461 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
65489488 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
65489515 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
65489540 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 9, Indels: 14
0.83 0.06 0.10
Matches are distributed among these distances:
26 10 0.09
27 102 0.88
28 4 0.03
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:65489540 original size:54 final size:54
Alignment explanation
Indices: 65489381--65489542 Score: 256
Period size: 54 Copynumber: 3.0 Consensus size: 54
65489371 GCGAGGCTGC
* * * * *
65489381 CAGATAT-TGTGACAGAGTCACCAGATACAGAT-ATTGTAGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
65489434 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
65489488 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
65489542 C
1 C
65489543 GCTTCCTCCA
Statistics
Matches: 102, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
53 12 0.12
54 90 0.88
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:65489679 original size:25 final size:26
Alignment explanation
Indices: 65489643--65489717 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 26
65489633 CAAAATTAAC
*
65489643 CCTAGGGGTATAACGGTAATTTTCTA
1 CCTAGGGGTATAACAGTAATTTTCTA
65489669 CCTA-GGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAACAGTAATTTT-C-TA
* *
65489696 CATAGGGGTATTACAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
65489718 AGCTGCTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
25 17 0.40
26 5 0.12
27 5 0.12
28 16 0.37
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTATAACAGTAATTTTCTA
Found at i:65491193 original size:26 final size:26
Alignment explanation
Indices: 65491157--65491292 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
65491147 CATGAAATTC
65491157 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
65491183 TTATCATGAAACATTTACCTAACCAA
1 TTATCATGAAACATTTACCTAACCCA
* *
65491209 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
65491235 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACCCA
*
65491261 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
65491287 TTATCA
1 TTATCA
65491293 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:65492430 original size:26 final size:26
Alignment explanation
Indices: 65492399--65492506 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
65492389 TGAAATGCCC
*
65492399 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
65492425 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
65492451 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
65492477 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
65492503 ATCA
1 ATCA
65492507 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:65496385 original size:93 final size:93
Alignment explanation
Indices: 65496280--65496471 Score: 348
Period size: 93 Copynumber: 2.1 Consensus size: 93
65496270 ACGCAAAAAT
* *
65496280 CATACAACAATATATATCATAAAATAGCACATAAAAGAAATAATTTAACATTGCATATAAAAAAA
1 CATACAACAATATATATCATAAAATAGCACATAAAAGAAATAATTAAACATAGCATATAAAAAAA
65496345 TGAAACTATGCACAAATAAGATAAATGA
66 TGAAACTATGCACAAATAAGATAAATGA
*
65496373 CATACAACAATATATATCATAAAATAGCATATAAAAGAAATAATTAAACATAGCATATAAAAAAA
1 CATACAACAATATATATCATAAAATAGCACATAAAAGAAATAATTAAACATAGCATATAAAAAAA
*
65496438 TGAAACTATGCACAAATATGATAAATGA
66 TGAAACTATGCACAAATAAGATAAATGA
65496466 CATACA
1 CATACA
65496472 CTAAAAAAAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 95 1.00
ACGTcount: A:0.57, C:0.12, G:0.07, T:0.23
Consensus pattern (93 bp):
CATACAACAATATATATCATAAAATAGCACATAAAAGAAATAATTAAACATAGCATATAAAAAAA
TGAAACTATGCACAAATAAGATAAATGA
Found at i:65496491 original size:93 final size:93
Alignment explanation
Indices: 65496280--65496497 Score: 287
Period size: 93 Copynumber: 2.3 Consensus size: 93
65496270 ACGCAAAAAT
* * * * * *
65496280 CATACAACAATATATATCATAAAATAGCACATAAAAGAAATAATTTAACATTGCATATAAAAAAA
1 CATACAACAAAAAAAATAATAAAATAGCACATAAAAGAAATAATTAAACATAGCATATAAAAAAA
65496345 TGAAACTATGCACAAATAAGATAAATGA
66 TGAAACTATGCACAAATAAGATAAATGA
* * * * *
65496373 CATACAACAATATATATCATAAAATAGCATATAAAAGAAATAATTAAACATAGCATATAAAAAAA
1 CATACAACAAAAAAAATAATAAAATAGCACATAAAAGAAATAATTAAACATAGCATATAAAAAAA
*
65496438 TGAAACTATGCACAAATATGATAAATGA
66 TGAAACTATGCACAAATAAGATAAATGA
*
65496466 CATAC-ACTAAAAAAAATGAAT-AAATAGAACAT
1 CATACAAC-AAAAAAAAT-AATAAAATAGCACAT
65496498 TTACATATAA
Statistics
Matches: 113, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
92 2 0.02
93 109 0.96
94 2 0.02
ACGTcount: A:0.58, C:0.11, G:0.07, T:0.23
Consensus pattern (93 bp):
CATACAACAAAAAAAATAATAAAATAGCACATAAAAGAAATAATTAAACATAGCATATAAAAAAA
TGAAACTATGCACAAATAAGATAAATGA
Found at i:65496959 original size:22 final size:21
Alignment explanation
Indices: 65496929--65497049 Score: 66
Period size: 19 Copynumber: 6.2 Consensus size: 21
65496919 TACAAATTAA
65496929 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
65496951 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
65496972 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
65496991 ATCT--AAGATT---GTATCAT
1 ATCTCCAAGATTACAG-ATCAT
* *
65497008 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
65497027 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
65497046 ATCT
1 ATCT
65497050 AAGATTGTAT
Statistics
Matches: 90, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
17 15 0.17
19 53 0.59
21 10 0.11
22 12 0.13
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:65496981 original size:19 final size:19
Alignment explanation
Indices: 65496946--65497098 Score: 260
Period size: 19 Copynumber: 8.2 Consensus size: 19
65496936 AGATTACAAG
65496946 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
65496967 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65496986 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
65497003 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65497022 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65497041 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
65497058 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65497077 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
65497096 ATC
1 ATC
65497099 CTTAAAGATT
Statistics
Matches: 128, Mismatches: 0, Indels: 10
0.93 0.00 0.07
Matches are distributed among these distances:
17 34 0.27
19 85 0.66
20 1 0.01
21 8 0.06
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:65497010 original size:36 final size:37
Alignment explanation
Indices: 65496946--65497098 Score: 240
Period size: 36 Copynumber: 4.1 Consensus size: 37
65496936 AGATTACAAG
65496946 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
65496986 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
65497022 ATCATATCTAAGATTGCATATCATATCTAAGATTG--T
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCAT
65497058 ATCATATCTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCAT
65497096 ATC
1 ATC
65497099 CTTAAAGATT
Statistics
Matches: 109, Mismatches: 0, Indels: 10
0.92 0.00 0.08
Matches are distributed among these distances:
36 72 0.66
38 28 0.26
39 1 0.01
40 8 0.07
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:65497020 original size:55 final size:55
Alignment explanation
Indices: 65496946--65497098 Score: 288
Period size: 55 Copynumber: 2.7 Consensus size: 55
65496936 AGATTACAAG
65496946 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
1 ATCATATC-T-AAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
65497003 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
65497058 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
65497099 CTTAAAGATT
Statistics
Matches: 96, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
55 87 0.91
56 1 0.01
57 8 0.08
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (55 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
Found at i:65499241 original size:22 final size:21
Alignment explanation
Indices: 65499211--65499257 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
65499201 TACAAATTAA
65499211 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
65499233 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
65499254 ATCT
1 ATCT
65499258 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:65499251 original size:16 final size:16
Alignment explanation
Indices: 65499230--65499280 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
65499220 ATTACAAGAT
65499230 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
65499246 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
65499265 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
65499281 ATATTTCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:65499263 original size:19 final size:21
Alignment explanation
Indices: 65499228--65499270 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
65499218 AGATTACAAG
65499228 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
65499249 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
65499268 ATC
1 ATC
65499271 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:65504306 original size:39 final size:39
Alignment explanation
Indices: 65504263--65504353 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 39
65504253 TTTTAGCCTT
65504263 TAAAATACATC-CCCAATAATTTTGTGATGCATCTGTTTC
1 TAAAATA-ATCTCCCAATAATTTTGTGATGCATCTGTTTC
*
65504302 TAAAATTAATCTCCCAATAATTTTGTGATGCATTTGTTTC
1 TAAAA-TAATCTCCCAATAATTTTGTGATGCATCTGTTTC
65504342 TAAAATTAATCT
1 TAAAA-TAATCT
65504354 ATCACCTTGT
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
39 8 0.16
40 41 0.84
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (39 bp):
TAAAATAATCTCCCAATAATTTTGTGATGCATCTGTTTC
Found at i:65504324 original size:40 final size:40
Alignment explanation
Indices: 65504274--65504353 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
65504264 AAAATACATC
65504274 CCCAATAATTTTGTGATGCATCTGTTTCTAAAATTAATCT
1 CCCAATAATTTTGTGATGCATCTGTTTCTAAAATTAATCT
*
65504314 CCCAATAATTTTGTGATGCATTTGTTTCTAAAATTAATCT
1 CCCAATAATTTTGTGATGCATCTGTTTCTAAAATTAATCT
65504354 ATCACCTTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (40 bp):
CCCAATAATTTTGTGATGCATCTGTTTCTAAAATTAATCT
Found at i:65505175 original size:15 final size:16
Alignment explanation
Indices: 65505155--65505187 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
65505145 GACTATTAGT
*
65505155 TTTTTCTATTAA-TCC
1 TTTTTCTAATAATTCC
65505170 TTTTTCTAATAATTCC
1 TTTTTCTAATAATTCC
65505186 TT
1 TT
65505188 GATTTGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTTCTAATAATTCC
Found at i:65509122 original size:28 final size:28
Alignment explanation
Indices: 65509021--65509134 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
65509011 ACTTGTAATA
* * *
65509021 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
65509049 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
65509081 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
65509110 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
65509135 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:65509155 original size:62 final size:61
Alignment explanation
Indices: 65509013--65509157 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
65509003 ATATCTCGAC
* * *
65509013 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* *
65509074 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
65509135 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
65509158 TAAAGCTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 42 0.57
62 30 0.41
63 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:65512443 original size:35 final size:36
Alignment explanation
Indices: 65512399--65512479 Score: 146
Period size: 35 Copynumber: 2.3 Consensus size: 36
65512389 AATCATATCT
*
65512399 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
65512434 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
65512470 TCTAAGATTG
1 TCTAAGATTG
65512480 CATATCATTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 29 0.66
36 15 0.34
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:65512472 original size:19 final size:19
Alignment explanation
Indices: 65512399--65512487 Score: 134
Period size: 17 Copynumber: 4.9 Consensus size: 19
65512389 AATCATATCT
65512399 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
65512416 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
65512434 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
65512451 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
65512470 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
65512488 TGAATATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
17 26 0.40
18 16 0.25
19 23 0.35
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:65513152 original size:83 final size:84
Alignment explanation
Indices: 65513043--65513341 Score: 466
Period size: 83 Copynumber: 3.6 Consensus size: 84
65513033 AGCTATATCT
* * *
65513043 TCGATTTGTATTCCTTGTAAGTACAAGGATACTAAACCATCTTGGA-TCT-TCTTGAGAACATCT
1 TCGATTTG--TTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAGTCTGT-TTGAGAACATCT
65513106 GAGAGTCATATCTGCAATGTCC
63 GAGAGTCATATCTGCAATGTCC
*
65513128 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT-GAGTCTGTTTGAGAACATTTGAG
1 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAGTCTGTTTGAGAACATCTGAG
*
65513192 AGTCATATCTACAATGTCC
66 AGTCATATCTGCAATGTCC
*
65513211 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCAT-TTTGAGTCTGTTTGAGAACA-CTTGA
1 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAGTCTGTTTGAGAACATC-TGA
65513274 GAGTCATATCTGCAATGTCC
65 GAGTCATATCTGCAATGTCC
65513294 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGA-TCTG
1 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAGTCTG
65513342 CTTCAGTATA
Statistics
Matches: 201, Mismatches: 8, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
82 4 0.02
83 184 0.92
84 5 0.02
85 8 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (84 bp):
TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAGTCTGTTTGAGAACATCTGAG
AGTCATATCTGCAATGTCC
Found at i:65513855 original size:119 final size:119
Alignment explanation
Indices: 65513271--65513852 Score: 993
Period size: 119 Copynumber: 4.9 Consensus size: 119
65513261 TGAGAACACT
* * * * * *
65513271 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
65513336 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATATTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
* * *
65513390 TGAGAGTCAAATCTACTATGTCCTCAATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
65513455 GATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
*
65513509 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
65513574 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATATTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
* *
65513628 TGAGAGTCAAATCTGCTTTGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
65513693 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTC
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
*
65513747 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAGACACAAGAATGCCAAATCATCTTG
1 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
65513812 GATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTAT
66 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
65513853 CTTCTATCTG
Statistics
Matches: 437, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 437 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
Found at i:65513892 original size:44 final size:44
Alignment explanation
Indices: 65513844--65514023 Score: 170
Period size: 44 Copynumber: 4.1 Consensus size: 44
65513834 TGAAGGTTAG
65513844 ATCTGCTATCTTCTATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCTATCTGTTCCCTATAAACACAGGGATGCCAA
*
65513888 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCTATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * * *
65513930 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCATAGGAATGTCAG
1 AT-CTGCTATCTTCTATCTG-TTCCCTATAAACACAGGGATGCCAA
* * *
65513976 ATCTACTATCTT-TGATCAGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCT-ATCTGTTCCCTATAAACACAGGGATGCCAA
65514020 ATCT
1 ATCT
65514024 TGTTTCTTTG
Statistics
Matches: 108, Mismatches: 21, Indels: 14
0.76 0.15 0.10
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 80 0.74
45 11 0.10
46 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCTATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:65514909 original size:21 final size:23
Alignment explanation
Indices: 65514885--65514930 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
65514875 TCACCTTGGC
65514885 CTCTCCA-TTTTTTTCT-TTTTT
1 CTCTCCATTTTTTTTCTCTTTTT
**
65514906 CTCTTTATTTTTTTTCTCTTTTT
1 CTCTCCATTTTTTTTCTCTTTTT
65514929 CT
1 CT
65514931 TTTCTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.74
Consensus pattern (23 bp):
CTCTCCATTTTTTTTCTCTTTTT
Found at i:65514918 original size:23 final size:21
Alignment explanation
Indices: 65514892--65514955 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 21
65514882 GGCCTCTCCA
65514892 TTTTTTTCTTTTTTCTCTTTAT
1 TTTTTTTCTTTTTTCT-TTTAT
*
65514914 TTTTTTTCTCTTTTTCTTTTCT
1 TTTTTTTCT-TTTTTCTTTTAT
* *
65514936 TTTTCTCTCTTTTTTTTTTT
1 TTTT-TTTCTTTTTTCTTTT
65514956 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 26 0.70
23 11 0.30
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTTCTTTTTTCTTTTAT
Found at i:65514931 original size:21 final size:21
Alignment explanation
Indices: 65514892--65514954 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
65514882 GGCCTCTCCA
*
65514892 TTTTTTTCT-TTTTTCTCTTTAT
1 TTTTTTTCTCTTTTTCT-TTT-C
65514914 TTTTTTTCTCTTTTTCTTTTC
1 TTTTTTTCTCTTTTTCTTTTC
* *
65514935 TTTTTCTCTCTTTTTTTTTT
1 TTTTTTTCTCTTTTTCTTTT
65514955 TGAAATAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 18 0.49
22 12 0.32
23 7 0.19
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTTCTCTTTTTCTTTTC
Found at i:65514933 original size:15 final size:15
Alignment explanation
Indices: 65514894--65514933 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
65514884 CCTCTCCATT
65514894 TTTTTCTTTTTTCTC
1 TTTTTCTTTTTTCTC
65514909 TTTATT-TTTTTTCTC
1 TTT-TTCTTTTTTCTC
65514924 TTTTTCTTTT
1 TTTTTCTTTT
65514934 CTTTTTCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 19 0.83
16 2 0.09
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTCTTTTTTCTC
Found at i:65514951 original size:13 final size:11
Alignment explanation
Indices: 65514892--65514954 Score: 56
Period size: 11 Copynumber: 5.6 Consensus size: 11
65514882 GGCCTCTCCA
65514892 TTTTTTTCTTT
1 TTTTTTTCTTT
*
65514903 TTTCTCTTTATTT
1 TTT-T-TTTCTTT
*
65514916 TTTTTCTCTTT
1 TTTTTTTCTTT
*
65514927 TTCTTTTC-TT
1 TTTTTTTCTTT
* *
65514937 TTTCTCTCTTT
1 TTTTTTTCTTT
65514948 TTTTTTT
1 TTTTTTT
65514955 TGAAATAGAA
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
10 7 0.18
11 21 0.54
12 2 0.05
13 9 0.23
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:65526086 original size:35 final size:36
Alignment explanation
Indices: 65526044--65526124 Score: 137
Period size: 35 Copynumber: 2.3 Consensus size: 36
65526034 AATCATATAT
*
65526044 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
*
65526079 TCTAAGATTGTATCATATCTAAGATTGCATATTACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
65526115 TCTAAGATTG
1 TCTAAGATTG
65526125 CATATCATTG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
35 29 0.67
36 14 0.33
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:65526119 original size:19 final size:19
Alignment explanation
Indices: 65526044--65526132 Score: 125
Period size: 17 Copynumber: 4.9 Consensus size: 19
65526034 AATCATATAT
65526044 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
65526061 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
65526079 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
65526096 TCTAAGATTGCATATTACA
1 TCTAAGATTGCATATCATA
65526115 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
65526133 TGAATATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
17 26 0.41
18 16 0.25
19 21 0.33
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:65526798 original size:83 final size:83
Alignment explanation
Indices: 65526689--65527064 Score: 666
Period size: 83 Copynumber: 4.5 Consensus size: 83
65526679 AGCTATATCT
* * * *
65526689 TCGATTTGTATTCCTTGTAAGTACAAGGATACTAAACCATCTTG-GATCT-TCTTGAGAACATCT
1 TCGATTTG--TTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAG-TCTGT-TTGAGAACATTT
65526752 GAGAGTCATATCTGCAATGTCC
62 GAGAGTCATATCTGCAATGTCC
65526774 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGA
1 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGA
65526839 GTCATATCTGCAATGTCC
66 GTCATATCTGCAATGTCC
65526857 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGA
1 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGA
65526922 GTCATATCTGCAATGTCC
66 GTCATATCTGCAATGTCC
65526940 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGA
1 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGA
65527005 GTCATATCTGCAATGTCC
66 GTCATATCTGCAATGTCC
65527023 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
65527065 GATCTGCTTC
Statistics
Matches: 285, Mismatches: 4, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
83 275 0.96
84 2 0.01
85 8 0.03
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (83 bp):
TCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGA
GTCATATCTGCAATGTCC
Found at i:65527587 original size:119 final size:119
Alignment explanation
Indices: 65526988--65527581 Score: 990
Period size: 119 Copynumber: 5.0 Consensus size: 119
65526978 CTTGAGTCTG
* * * * * *
65526988 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
65527053 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
65527107 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCAATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* * *
65527172 CAAATCATCTTGGATCTGCTTCAGTATAAAAATTTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
65527226 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
65527291 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
65527345 TTTGAAAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCTTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
65527410 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
65527464 TTCGAGAACGTCTGAGAGTCAAATCTACTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
65527529 CAAATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
65527582 CTTCGATCTG
Statistics
Matches: 445, Mismatches: 30, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 445 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:65527621 original size:44 final size:44
Alignment explanation
Indices: 65527573--65527752 Score: 186
Period size: 44 Copynumber: 4.1 Consensus size: 44
65527563 TGAAGGTTAG
65527573 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
65527617 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * *
65527659 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * * *
65527705 ATCTACTATCTTTGATCTGTTGCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
65527749 ATCT
1 ATCT
65527753 TGTTTCTTTG
Statistics
Matches: 108, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 79 0.73
45 12 0.11
46 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:65528637 original size:21 final size:21
Alignment explanation
Indices: 65528613--65528677 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
65528603 TCACCTTGGC
*
65528613 CTCTCCATTTTTTTCTTTTTT
1 CTCTTCATTTTTTTCTTTTTT
*
65528634 CTCTTTATTTTTTTCTCTTTTT
1 CTCTTCATTTTTTTCT-TTTTT
* *
65528656 CTTTTCTTTTTTTCTCTTTTTT
1 CTCTTCATTTTTT-TCTTTTTT
65528678 TTTTGAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 14 0.38
22 20 0.54
23 3 0.08
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (21 bp):
CTCTTCATTTTTTTCTTTTTT
Found at i:65528646 original size:13 final size:12
Alignment explanation
Indices: 65528628--65528680 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
65528618 CATTTTTTTC
65528628 TTTTTTCTCTTTAT
1 TTTTTTCTC-TT-T
65528642 TTTTTTCTCTTT
1 TTTTTTCTCTTT
*
65528654 TTCTTT-TC--T
1 TTTTTTCTCTTT
65528663 TTTTTTCTCTTT
1 TTTTTTCTCTTT
65528675 TTTTTT
1 TTTTTT
65528681 TGAAATAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
9 6 0.18
10 2 0.06
11 2 0.06
12 13 0.38
13 2 0.06
14 9 0.26
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTCTCTTT
Found at i:65528646 original size:20 final size:21
Alignment explanation
Indices: 65528619--65528681 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
65528609 TGGCCTCTCC
65528619 ATTTTTTTCT-TTTTTCTCTTT
1 ATTTTTTTCTCTTTTTCT-TTT
65528640 ATTTTTTTCTCTTTTTCTTTT
1 ATTTTTTTCTCTTTTTCTTTT
* *
65528661 CTTTTTTTCTCTTTTTTTTTT
1 ATTTTTTTCTCTTTTTCTTTT
65528682 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
21 32 0.82
22 7 0.18
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (21 bp):
ATTTTTTTCTCTTTTTCTTTT
Found at i:65528647 original size:14 final size:13
Alignment explanation
Indices: 65528623--65528668 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
65528613 CTCTCCATTT
65528623 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
65528637 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
65528651 TTTTTCTTTTCT-
1 TTTTTTTTTTCTC
65528663 TTTTTT
1 TTTTTT
65528669 CTCTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 5 0.17
13 8 0.28
14 15 0.52
15 1 0.03
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:65528681 original size:14 final size:14
Alignment explanation
Indices: 65528622--65528668 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
65528612 CCTCTCCATT
65528622 TTTTTCTTTTTTCTC
1 TTTTT-TTTTTTCTC
*
65528637 TTTATTTTTTTCTC
1 TTTTTTTTTTTCTC
*
65528651 -TTTTTCTTTTCT-
1 TTTTTTTTTTTCTC
65528663 TTTTTT
1 TTTTTT
65528669 CTCTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 15 0.54
14 9 0.32
15 4 0.14
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTCTC
Found at i:65534501 original size:15 final size:15
Alignment explanation
Indices: 65534460--65534503 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 15
65534450 TTAAAATATA
65534460 ATAAAAAATATATTT
1 ATAAAAAATATATTT
65534475 ATAAGAATAATA-ATTAT
1 ATAA-AA-AATATATT-T
65534492 ATAAAAAATATA
1 ATAAAAAATATA
65534504 AAATATATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 8 0.32
16 8 0.32
17 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (15 bp):
ATAAAAAATATATTT
Found at i:65535025 original size:35 final size:36
Alignment explanation
Indices: 65534976--65535056 Score: 137
Period size: 35 Copynumber: 2.3 Consensus size: 36
65534966 AATCATATCT
* *
65534976 TCTAAGATTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
65535011 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
65535047 TCTAAGATTG
1 TCTAAGATTG
65535057 CATATCATTG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
35 28 0.65
36 15 0.35
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:65535049 original size:19 final size:19
Alignment explanation
Indices: 65534976--65535064 Score: 134
Period size: 17 Copynumber: 4.9 Consensus size: 19
65534966 AATCATATCT
65534976 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
65534993 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
65535011 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
65535028 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
65535047 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
65535065 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
17 25 0.38
18 16 0.25
19 24 0.37
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:65535071 original size:36 final size:35
Alignment explanation
Indices: 65534976--65535072 Score: 117
Period size: 35 Copynumber: 2.7 Consensus size: 35
65534966 AATCATATCT
* * *
65534976 TCTAAGATTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCGAAGATTGCAATCACA
*
65535011 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCGAAGATTGCA-ATCACA
65535047 TCTAAGATTGCATATCAT-T-GAAGATT
1 TCTAAGATTG--TATCATATCGAAGATT
65535073 ATATTTCCAT
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
35 28 0.50
36 21 0.38
37 1 0.02
38 6 0.11
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCGAAGATTGCAATCACA
Found at i:65535072 original size:17 final size:18
Alignment explanation
Indices: 65534992--65535061 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
65534982 ATTATATCAT
*
65534992 ATCTAAGATTGCA-ATCAT
1 ATCTAAGATTGCATAT-AC
*
65535010 ATCTAAGATTG--TATCAT
1 ATCTAAGATTGCATAT-AC
65535027 ATCTAAGATTGCATATCAC
1 ATCTAAGATTGCATAT-AC
65535046 ATCTAAGATTGCATAT
1 ATCTAAGATTGCATAT
65535062 CATTGAAGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
17 16 0.33
18 11 0.23
19 21 0.44
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (18 bp):
ATCTAAGATTGCATATAC
Found at i:65535606 original size:28 final size:28
Alignment explanation
Indices: 65535574--65535629 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
65535564 AACAAACCAC
65535574 ATAGGATAGATGATTTAAATAAAAGAAA
1 ATAGGATAGATGATTTAAATAAAAGAAA
65535602 ATAGGATAGATGATTTAAATAAAAGAAA
1 ATAGGATAGATGATTTAAATAAAAGAAA
65535630 TGTGGCTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.18, T:0.25
Consensus pattern (28 bp):
ATAGGATAGATGATTTAAATAAAAGAAA
Found at i:65538378 original size:24 final size:24
Alignment explanation
Indices: 65538346--65538392 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
65538336 AACACCTAAT
*
65538346 GATTTATATA-ATAACATATAAAAA
1 GATTAATATATATAA-ATATAAAAA
65538370 GATTAATATATATAAATATAAAA
1 GATTAATATATATAAATATAAAA
65538393 TAAAGTGAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (24 bp):
GATTAATATATATAAATATAAAAA
Found at i:65538787 original size:14 final size:16
Alignment explanation
Indices: 65538765--65538801 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
65538755 ATCTTTAATA
*
65538765 ATAATAATAT-ATAG-
1 ATAAAAATATAATAGT
65538779 ATAAAAATATAATAGT
1 ATAAAAATATAATAGT
65538795 ATAAAAA
1 ATAAAAA
65538802 ATGACATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 4 0.20
16 7 0.35
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (16 bp):
ATAAAAATATAATAGT
Found at i:65538901 original size:37 final size:33
Alignment explanation
Indices: 65538855--65538949 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 33
65538845 TATATAATAT
65538855 ATATAAATAATTAATAAATATATAATACAAGTAAAA
1 ATATAAATAA-TAATAAATA-ATAATA-AAGTAAAA
**
65538891 AGTATAAATAATAATGTAAATAATAATAATTTAAAA
1 A-TATAAATAATAA--TAAATAATAATAAAGTAAAA
65538927 ATATATAATAAATAAT-AATAATA
1 ATATA-AAT-AATAATAAATAATA
65538950 TGAAATAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
34 7 0.13
35 5 0.10
36 14 0.27
37 20 0.38
38 6 0.12
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (33 bp):
ATATAAATAATAATAAATAATAATAAAGTAAAA
Found at i:65538917 original size:15 final size:14
Alignment explanation
Indices: 65538897--65538959 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 14
65538887 AAAAAGTATA
65538897 AATAATAATGTAAAT
1 AATAATAAT-TAAAT
65538912 AATAATAATTTAAA-
1 AATAATAA-TTAAAT
65538926 AATATATAA-TAAAT
1 AATA-ATAATTAAAT
65538940 AATAATAATATGAAAT
1 AATAATAAT-T-AAAT
65538956 AATA
1 AATA
65538960 TAAGGTTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.19
14 8 0.19
15 17 0.40
16 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AATAATAATTAAAT
Found at i:65538939 original size:28 final size:28
Alignment explanation
Indices: 65538845--65538948 Score: 85
Period size: 28 Copynumber: 3.8 Consensus size: 28
65538835 GGCATATATG
*
65538845 TATATAATATAT-ATAAATAA-TTAATAAA
1 TATATAATAAATAAT-AATAATTTAA-AAA
* *
65538873 TATATAATACAAGTAA-AA-AGTATAAATAA
1 TATATAATA-AA-TAATAATAATTTAAA-AA
*
65538902 TA-AT-GTAAATAATAATAATTTAAAAA
1 TATATAATAAATAATAATAATTTAAAAA
65538928 TATATAATAAATAATAATAAT
1 TATATAATAAATAATAATAAT
65538949 ATGAAATAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
25 3 0.05
26 8 0.13
27 10 0.17
28 27 0.45
29 10 0.17
30 1 0.02
31 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.35
Consensus pattern (28 bp):
TATATAATAAATAATAATAATTTAAAAA
Found at i:65548054 original size:50 final size:50
Alignment explanation
Indices: 65548000--65548099 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
65547990 ACTCAGGTAC
*
65548000 ATCTTCTCCTCCTCAAGCTTTTCTATCTTCTTTTCGAGTTCCAAATTCTT
1 ATCTTCTCCTCCTCAAGCTTTTCTATCTTCTTTTCGAGCTCCAAATTCTT
65548050 ATCTTCTCCTCCTCAAGCTTTTCTATCTTCTTTTCGAGCTCCAAATTCTT
1 ATCTTCTCCTCCTCAAGCTTTTCTATCTTCTTTTCGAGCTCCAAATTCTT
65548100 TCTCTTAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.16, C:0.31, G:0.06, T:0.47
Consensus pattern (50 bp):
ATCTTCTCCTCCTCAAGCTTTTCTATCTTCTTTTCGAGCTCCAAATTCTT
Found at i:65548080 original size:24 final size:24
Alignment explanation
Indices: 65548000--65548080 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 24
65547990 ACTCAGGTAC
65548000 ATCTTCTCCTCCTCAAGCTTTTCT
1 ATCTTCTCCTCCTCAAGCTTTTCT
** * * *
65548024 ATCTTCTTTTCGAGTTCCAA-ATTCT-T
1 ATCTTCTCCTC---CT-CAAGCTTTTCT
65548050 ATCTTCTCCTCCTCAAGCTTTTCT
1 ATCTTCTCCTCCTCAAGCTTTTCT
65548074 ATCTTCT
1 ATCTTCT
65548081 TTTCGAGCTC
Statistics
Matches: 41, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
22 3 0.07
23 4 0.10
24 17 0.41
26 10 0.24
27 4 0.10
28 3 0.07
ACGTcount: A:0.15, C:0.32, G:0.05, T:0.48
Consensus pattern (24 bp):
ATCTTCTCCTCCTCAAGCTTTTCT
Found at i:65551153 original size:11 final size:10
Alignment explanation
Indices: 65551094--65551152 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
65551084 GTTATATATA
*
65551094 ATAATATAAT
1 ATAATAAAAT
65551104 ATGAATAAAAT
1 AT-AATAAAAT
**
65551115 ATAAGGAAAT
1 ATAATAAAAT
65551125 ATAATATAAA-
1 ATAATA-AAAT
65551135 ATAATAAGAAT
1 ATAATAA-AAT
65551146 ATAATAA
1 ATAATAA
65551153 GTATTTTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (10 bp):
ATAATAAAAT
Found at i:65551314 original size:3 final size:3
Alignment explanation
Indices: 65551306--65551330 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
65551296 TGGTATACGT
65551306 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
65551331 AGTAACAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:65554264 original size:6 final size:6
Alignment explanation
Indices: 65554252--65554440 Score: 154
Period size: 6 Copynumber: 30.7 Consensus size: 6
65554242 AAGAAACATT
* * *
65554252 ATCAGA ATTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
65554299 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
65554350 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCATA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
65554401 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCA
65554441 AAATATGAAT
Statistics
Matches: 146, Mismatches: 22, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
5 9 0.06
6 117 0.80
7 13 0.09
8 7 0.05
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:65554276 original size:18 final size:18
Alignment explanation
Indices: 65554261--65554444 Score: 99
Period size: 19 Copynumber: 9.9 Consensus size: 18
65554251 TATCAGAATT
* * *
65554261 AGAATCAAAATGAGAATC
1 AGAATCAGAATCAAAATC
*
65554279 AGAATCAGAATCAGAATC
1 AGAATCAGAATCAAAATC
*
65554297 AG-GTGACAGAATCAAAATC
1 AGAAT--CAGAATCAAAATC
* *
65554316 AGAATCAGAATCAGAATT
1 AGAATCAGAATCAAAATC
*
65554334 AGGTAA-CAGAATCAGAATC
1 A-G-AATCAGAATCAAAATC
* *
65554353 AGTATCAGGTAA-CAGAATC
1 AGAATCA-G-AATCAAAATC
* *
65554372 AGAATCAGAACCATAATC
1 AGAATCAGAATCAAAATC
* *
65554390 AGAATTAGGTAA-CAGAATC
1 AGAATCA-G-AATCAAAATC
* *
65554409 AGAATCAGTATCAGGTAA-C
1 AGAATCAGAATCA--AAATC
65554428 AGAATCAGAATCAAAAT
1 AGAATCAGAATCAAAAT
65554445 ATGAATGCAA
Statistics
Matches: 133, Mismatches: 18, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
17 7 0.05
18 49 0.37
19 68 0.51
20 9 0.07
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (18 bp):
AGAATCAGAATCAAAATC
Found at i:65554309 original size:25 final size:24
Alignment explanation
Indices: 65554252--65554440 Score: 154
Period size: 25 Copynumber: 7.7 Consensus size: 24
65554242 AAGAAACATT
* * *
65554252 ATCAGAATTAGAATCAAAATGAGA
1 ATCAGAATCAGAATCAGAATCAGA
65554276 ATCAGAATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGAATCAGA
* *
65554299 GTGACAGAATCAAAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGAATCAGA
*
65554325 ATCAGAATTAGGTAA-CAGAATCAGA
1 ATCAGAATCA-G-AATCAGAATCAGA
*
65554350 ATCAGTATCAGGTAA-CAGAATCAGA
1 ATCAGAATCA-G-AATCAGAATCAGA
* * *
65554375 ATCAGAACCATAATCAGAATTAGGTA
1 ATCAGAATCAGAATCAGAATCA-G-A
*
65554401 A-CAGAATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCAGAATCA-G-A
65554426 A-CAGAATCAGAATCA
1 ATCAGAATCAGAATCA
65554441 AAATATGAAT
Statistics
Matches: 139, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
23 3 0.02
24 34 0.24
25 97 0.70
26 5 0.04
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGAATCAGA
Found at i:65554319 original size:37 final size:37
Alignment explanation
Indices: 65554275--65554394 Score: 138
Period size: 37 Copynumber: 3.2 Consensus size: 37
65554265 TCAAAATGAG
*
65554275 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* *
65554312 AATCAGAATCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* * *
65554349 AATCAGTATCAGGTAA-CAGAATCA-G-AATCAGAACCAT
1 AATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATCAA
65554386 AATCAGAAT
1 AATCAGAAT
65554395 TAGGTAACAG
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
36 2 0.03
37 60 0.83
38 8 0.11
39 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.18
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:65554417 original size:62 final size:62
Alignment explanation
Indices: 65554278--65554440 Score: 281
Period size: 62 Copynumber: 2.6 Consensus size: 62
65554268 AAATGAGAAT
* * * *
65554278 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
*
65554340 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCATAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
65554402 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
65554441 AAATATGAAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 96 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:65554435 original size:19 final size:19
Alignment explanation
Indices: 65554284--65554416 Score: 121
Period size: 19 Copynumber: 6.8 Consensus size: 19
65554274 GAATCAGAAT
*
65554284 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
*
65554303 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
65554320 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
65554340 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
65554365 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
65554382 CCATAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
65554402 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
65554417 TATCAGGTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.03
18 26 0.28
19 41 0.44
20 4 0.04
21 1 0.01
23 1 0.01
25 17 0.18
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:65554632 original size:26 final size:26
Alignment explanation
Indices: 65554562--65554638 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 26
65554552 AGCATGGCTG
* * *
65554562 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
65554588 CCAGATACAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATTGTGGCAAAGCCA
* *
65554615 CCAGAACAGATAATGTGGAAAAGC
1 CCAGAACAGATATTGTGGCAAAGC
65554639 TACTTAACAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 22 0.49
27 23 0.51
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:65555995 original size:27 final size:27
Alignment explanation
Indices: 65555290--65555988 Score: 861
Period size: 27 Copynumber: 26.0 Consensus size: 27
65555280 AGGACAAAAT
* * *
65555290 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
65555317 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
65555344 GGTATTTCTACCCTACAAGGGTTTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
65555371 GGTAATTCTATCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
** *
65555398 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
65555425 GAG-ATTTCTACCCTACAAGGGTATTTC
1 G-GTAATTCTACCCTACAAGGGTATTTC
* * *
65555452 GATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
65555479 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
65555506 AGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
65555533 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
65555560 GGTATTTCTACCTTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
65555587 AGTAATTCTACCC-ATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
65555613 GGTAATTCTACCCTACAGGGGTATTAT-
1 GGTAATTCTACCCTACAAGGGTATT-TC
* *
65555640 -GTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
65555666 GGTATTTCTACCCTTCAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
65555693 GATATTTCTACCTTA-TAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
65555719 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
65555746 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
65555773 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
65555800 GGTATTTCTACCCTATAAGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
65555827 AGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
65555854 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
65555881 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
65555908 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
65555935 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
65555962 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
65555989 AATAATTTTG
Statistics
Matches: 585, Mismatches: 78, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
25 1 0.00
26 71 0.12
27 510 0.87
28 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:65556010 original size:27 final size:27
Alignment explanation
Indices: 65555980--65556211 Score: 166
Period size: 27 Copynumber: 8.6 Consensus size: 27
65555970 TACCCTACAG
* * *
65555980 GGGTATTTCAATAATTTTGTAAACCGA
1 GGGTATTTCAGTAATTTTGCAAATCGA
*** * * * *
65556007 GGGTAAAACGGTAATTCTGTAAATCGG
1 GGGTATTTCAGTAATTTTGCAAATCGA
* * *
65556034 GGGTACTTTGA-TAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTGCAAATCGA
*
65556061 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTGCAAATCGA
65556088 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTGCAAATC-GA
* *
65556115 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTGCAAATCGA
* ** ** * * *
65556142 GGATATTTGGGTAATTTTATATACCGG
1 GGGTATTTCAGTAATTTTGCAAATCGA
* * *
65556169 GGGTACTTT-AGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTGCAAATCGA
65556195 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
65556212 GGTAAACTAA
Statistics
Matches: 164, Mismatches: 35, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
25 3 0.02
26 20 0.12
27 137 0.84
28 4 0.02
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGCAAATCGA
Found at i:65556102 original size:81 final size:81
Alignment explanation
Indices: 65555980--65556160 Score: 186
Period size: 81 Copynumber: 2.2 Consensus size: 81
65555970 TACCCTACAG
* ** * * *
65555980 GGGTATTTCAATAATTTTGTAAACCGAGGGTAAAACGGTAATTCTGTAAA-TCGGGGGTACTTT-
1 GGGTATTTCAGTAATTTTACAAACCGAGGGTAAAACAGTAATTCTGCAAACT-GAGGGTA-TTTC
*
65556043 GATAATTTTACAAGTCGA
64 GATAATTTTACAAATCGA
* *** * *
65556061 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAACCGAGGGTAAAACAGTAATTCTGCAAACTGAGGGTATTTCGA
65556126 TAATTTTACAAATCGA
66 TAATTTTACAAATCGA
* **
65556142 GGATATTTGGGTAATTTTA
1 GGGTATTTCAGTAATTTTA
65556161 TATACCGGGG
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 3 0.04
81 78 0.95
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAACCGAGGGTAAAACAGTAATTCTGCAAACTGAGGGTATTTCGA
TAATTTTACAAATCGA
Found at i:65556120 original size:54 final size:54
Alignment explanation
Indices: 65555980--65556211 Score: 200
Period size: 54 Copynumber: 4.3 Consensus size: 54
65555970 TACCCTACAG
* ** *** * * ** *
65555980 GGGTATTTCAATAATTTTGTAAACCGAGGGTAAAACGGTAATTCTGTAAATCGG
1 GGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCGA
* **
65556034 GGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGA
1 GGGTA-TTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCGA
* * *
65556088 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCGA
* ** * * * * *
65556142 GGATATTTGGGTAATTTTATATACCGGGGGTACTTT-AGTAATTTTACAACT-GG
1 GGGTATTTCAGTAATTTTACAAACCGAGGGTA-TTTCAGTAATTTTACAAATCGA
65556195 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
65556212 GGTAAACTAA
Statistics
Matches: 142, Mismatches: 33, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 19 0.13
54 116 0.82
55 7 0.05
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAAATCGA
Found at i:65556173 original size:81 final size:80
Alignment explanation
Indices: 65556045--65556211 Score: 210
Period size: 81 Copynumber: 2.1 Consensus size: 80
65556035 GGTACTTTGA
* * * *
65556045 TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTGCA
1 TAATTTTACAAATCGAGGATATTTCAGTAATTTTACAAACCGAGGGTACTTT-AGTAATTTTAC-
*
65556109 AACTGAGGGTATTTCGG
64 AACTGAGGGTATTTCAG
** * * *
65556126 TAATTTTACAAATCGAGGATATTTGGGTAATTTTATATACCGGGGGTACTTTAGTAATTTTACAA
1 TAATTTTACAAATCGAGGATATTTCAGTAATTTTACAAACCGAGGGTACTTTAGTAATTTTACAA
*
65556191 CTGGGGGTATTTCAG
66 CTGAGGGTATTTCAG
65556206 TAATTT
1 TAATTT
65556212 GGTAAACTAA
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
80 21 0.28
81 50 0.68
82 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (80 bp):
TAATTTTACAAATCGAGGATATTTCAGTAATTTTACAAACCGAGGGTACTTTAGTAATTTTACAA
CTGAGGGTATTTCAG
Found at i:65557189 original size:16 final size:16
Alignment explanation
Indices: 65557156--65557188 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
65557146 TATACAAATC
*
65557156 AAGGAATTATTAGAAA
1 AAGGAATTAATAGAAA
65557172 AAGG-ATTAATAGAAA
1 AAGGAATTAATAGAAA
65557187 AA
1 AA
65557189 ACTAATAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (16 bp):
AAGGAATTAATAGAAA
Found at i:65559216 original size:33 final size:31
Alignment explanation
Indices: 65559177--65559254 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 31
65559167 ACAAACATAC
*
65559177 AAAGTAATAATTAAATAATACATGATATACAAA
1 AAAGTAATAA-TAAATAATACATGACATAC-AA
*
65559210 AAAGTAAT-A-AAATAATGCATGACATACAA
1 AAAGTAATAATAAATAATACATGACATACAA
65559239 AAAG-AATAATACAATA
1 AAAGTAATAATA-AATA
65559255 TCAATGTACA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
28 3 0.08
29 7 0.17
30 17 0.43
31 4 0.10
32 1 0.03
33 8 0.20
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (31 bp):
AAAGTAATAATAAATAATACATGACATACAA
Found at i:65559923 original size:31 final size:28
Alignment explanation
Indices: 65559855--65559930 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 28
65559845 TAATATATAT
*
65559855 AAATAATTAATAAATATATAATACAAGTAA
1 AAATAA-TAAT-AATATATAAAACAAGTAA
*
65559885 AATATAATAATAATATATAAAACAATGATGGA
1 AA-ATAATAATAATATATAAAACAA-G-T-AA
65559917 AAATAATAATAATA
1 AAATAATAATAATA
65559931 ATTTGTGAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
29 13 0.32
30 7 0.17
31 17 0.43
32 3 0.08
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (28 bp):
AAATAATAATAATATATAAAACAAGTAA
Found at i:65562353 original size:203 final size:210
Alignment explanation
Indices: 65561617--65562411 Score: 984
Period size: 209 Copynumber: 3.9 Consensus size: 210
65561607 AAATCTTCTT
* * * *
65561617 CTTCGATTTGTTCTCTGACAATATAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGGTGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * * ** * * * *
65561682 GTGAAA-ACTAAATTAGCTATGTCTTTGATTTGCTCCTTG--TAAGCACA-AG-GAT--G-CCAA
66 GTGAAAGTC-AAATCAGCTATATCTTCGATCTGCTCCCCGCCGAA-TACAGAGAGATAAGATC-T
* * * * * * **
65561739 ATCATCTTGGATCTTGTTTCAATC-TAATCGTCTGAAGGTCAGATCTGCTATGTATCTG-CTCTC
128 GTCATCTTGGATC-TGCTTC-AGCGTAAACATCTGAAGGTGAGATCTGCTATGCGTCTGCCT-TC
* ** * *
65561802 TATTGAAGTAGAGATGCCAGA
190 CATCAAAGTGGAAATGCCAGA
* * * *
65561823 CTTCAATTTGTTCACTGAAAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGT-AACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGGTGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
65561887 GTGAAAGTCAAATCAGCTATATCTTCGATCTGCTCCCCACCAAATACAGAGAGATAAGATCTATC
66 GTGAAAGTCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
65561952 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGCGTCTGCCTTCCATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGCGTCTGCCTTCCATCAA
65562017 AGTGGAAATGCCAGA
196 AGTGGAAATGCCAGA
*
65562032 CTTTGATTTGTTCTCTGACAATACAGAGGCT-ACAAATCATCTTAGATTTGCTTCATCGTAAACA
1 CTTCGATTTGTTCTCTGACAATACAGAGG-TGACAAATCATCTTAGATTTGCTTCATCGTAAACA
* *
65562096 CGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCTGCCG-ATACAGAGAGATAAGATCTGT
65 CGTGAAAGTCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGT
*
65562160 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATCA
130 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGCGTCTGCCTTCCATCA
* *
65562225 CAG-GGAAATGTCAGA
195 AAGTGGAAATGCCAGA
*
65562240 CTTCGATTTG-T-TCT-A-TA-ACAGAGGTGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGGTGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
65562300 GTGAAAGTCAAATCAGCTATATATTCGATCTGC-CCCCGCCGAATACAGAGAGATAAG-TCTGTC
66 GTGAAAGTCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
*
65562363 ATCTTGGATCTGCTTCAGCGTCAACATCTGAAGGTGAGATCTGCTATGC
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGC
65562412 TGCGGCTTAT
Statistics
Matches: 525, Mismatches: 50, Indels: 32
0.86 0.08 0.05
Matches are distributed among these distances:
202 61 0.12
203 87 0.17
204 1 0.00
205 34 0.06
206 61 0.12
207 5 0.01
208 25 0.05
209 190 0.36
210 60 0.11
211 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (210 bp):
CTTCGATTTGTTCTCTGACAATACAGAGGTGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGTCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGCGTCTGCCTTCCATCAA
AGTGGAAATGCCAGA
Found at i:65570824 original size:20 final size:20
Alignment explanation
Indices: 65570801--65570867 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 20
65570791 TTTTCTCAAA
*
65570801 ATTATTATTTTTTTATATTT
1 ATTATTATTTTTTTATATAT
*
65570821 ATTATTATATTTTTTCT-TAT
1 ATTATTAT-TTTTTTATATAT
* *
65570841 ATTATATATTTATTTATACAT
1 ATTAT-TATTTTTTTATATAT
65570862 ATTATT
1 ATTATT
65570868 TTACATATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 22 0.56
21 17 0.44
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTATTATTTTTTTATATAT
Found at i:65570830 original size:12 final size:12
Alignment explanation
Indices: 65570801--65570857 Score: 50
Period size: 12 Copynumber: 4.9 Consensus size: 12
65570791 TTTTCTCAAA
65570801 ATTATTATTT-TT
1 ATTA-TATTTATT
65570813 -TTATATTTATT
1 ATTATATTTATT
*
65570824 ATTATATTTTTT
1 ATTATATTTATT
*
65570836 CTTATA-TTATAT
1 ATTATATTTAT-T
65570848 ATT-TATTTAT
1 ATTATATTTAT
65570858 ACATATTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 5 0.14
11 10 0.27
12 22 0.59
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (12 bp):
ATTATATTTATT
Found at i:65570840 original size:24 final size:22
Alignment explanation
Indices: 65570808--65570855 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
65570798 AAAATTATTA
65570808 TTTTTTTATATT-TATTATTATAT
1 TTTTTTTATATTATA-TATT-TAT
65570831 TTTTTCTTATATTATATATTTAT
1 TTTTT-TTATATTATATATTTAT
65570854 TT
1 TT
65570856 ATACATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 10 0.43
24 11 0.48
25 2 0.09
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTTTTATATTATATATTTAT
Found at i:65570857 original size:17 final size:16
Alignment explanation
Indices: 65570816--65570858 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
65570806 TATTTTTTTA
65570816 TATTTATTATTATATTT
1 TATTTA-TATTATATTT
*
65570833 TTTCTTATATTATATATT
1 TAT-TTATATTATAT-TT
65570851 TATTTATA
1 TATTTATA
65570859 CATATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTATATTATATTT
Found at i:65570969 original size:39 final size:38
Alignment explanation
Indices: 65570897--65570971 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 38
65570887 ATTTTACGCT
*
65570897 ATATTTATTATATTATTTTCCTTATATTTTTATTATACA
1 ATATTTATTATATTATTTT-CTTATATTCTTATTATACA
65570936 ATATTTATTATGTATTA-TTT-TTATATTACTTATTAT
1 ATATTTATTA--TATTATTTTCTTATATT-CTTATTAT
65570972 TTTTATATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
38 7 0.22
39 17 0.53
40 3 0.09
41 5 0.16
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (38 bp):
ATATTTATTATATTATTTTCTTATATTCTTATTATACA
Found at i:65570990 original size:18 final size:18
Alignment explanation
Indices: 65570941--65570987 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
65570931 ATACAATATT
65570941 TATTATGTATTATTTTTA
1 TATTATGTATTATTTTTA
65570959 TATTACT-TATTATTTTTA
1 TATTA-TGTATTATTTTTA
65570977 TATATATGTAT
1 TAT-TATGTAT
65570988 ATTACATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (18 bp):
TATTATGTATTATTTTTA
Found at i:65583149 original size:119 final size:119
Alignment explanation
Indices: 65582982--65583697 Score: 1042
Period size: 119 Copynumber: 6.0 Consensus size: 119
65582972 TAGGCCGCAG
*
65582982 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* *
65583047 TTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
* * *
65583101 TATAACAGATCTAGCTTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* * * *
65583166 TTTACAAGAAAAAAATTGAGGACATAGCAGATTTGACTCTCAGACATTCTC-AG
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
* *
65583219 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTATG
1 TATAGCAGATCTAACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* * *
65583284 TTTACAAGAAACAAATCGAGGATATAGCAGATTTGACTCTCAAACGTTCTCAGA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
* ** *
65583338 TATAGCAGATCTAAAC-TTCATATGTTTATACTGAAATAGATCCAAGATGATTTAGTATTCTTGT
1 TATAGCAGATCT-AACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
* * *
65583402 GTTTACAAGAAACAAATCGAGGACTTAGCAAATTTGACTCTCAGACGTTCTCAGA
65 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
*
65583457 TATAGTAGATCTAAAC-TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
1 TATAGCAGATCT-AACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
* * *
65583521 GTTTACAAGGAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACA
65 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA-A-A
* * * * * **
65583578 CATGGCAGATCTAACCTTCAGATGTTTATAATGAAGCCAGATCCAATATGATTTGACATTCTTGT
1 TATAGCAGATCTAACTTTCAGATGTTTATACTGAAG-CAGATCCAAGATGATTTGGTATTCTTGT
* * *
65583643 GTTTACAAGAAACAAATCGAGGACATAGTAGATTTGACTCTAAGATGTTCTCAAA
65 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
65583698 CAGACTCCAG
Statistics
Matches: 541, Mismatches: 50, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
118 109 0.20
119 322 0.60
120 6 0.01
121 30 0.06
122 74 0.14
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (119 bp):
TATAGCAGATCTAACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
Found at i:65583398 original size:237 final size:236
Alignment explanation
Indices: 65582979--65583683 Score: 1081
Period size: 237 Copynumber: 3.0 Consensus size: 236
65582969 TAATAGGCCG
65582979 CAGTATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
1 CAGTATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
* * * *
65583044 GTGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAACAG
66 GTGTTTACAAGAAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAG
*
65583109 ATCT-AGCTTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAA
131 ATCTAAAC-TTCAGATGTTTATACTGAAACAGATCCAAGATGATTT-GTATTCTTGTGTTTACAA
* *
65583173 GAAAAAAATTGAGGACATAGCAGATTTGACTCTCAGACATTCT
194 GAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCT
65583216 CAGTATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
1 CAGTATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
* * *
65583281 ATGTTTACAAGAAACAAATCGAGGATATAGCAGATTTGACTCTCAAACGTTCTCAGATATAGCAG
66 GTGTTTACAAGAAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAG
* *
65583346 ATCTAAACTTCATATGTTTATACTGAAATAGATCCAAGATGATTTAGTATTCTTGTGTTTACAAG
131 ATCTAAACTTCAGATGTTTATACTGAAACAGATCCAAGATGATTT-GTATTCTTGTGTTTACAAG
* * *
65583411 AAACAAATCGAGGACTTAGCAAATTTGACTCTCAGACGTTCT
195 AAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCT
* *
65583453 CAGATATAGTAGATCTAAAC-TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
1 CAG-TATAGCAGATCT-AGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTC
* * *
65583517 TTGTGTTTACAAGGAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGACACATG
64 TTGTGTTTACAAGAAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAG--ATATA
* * * * *
65583582 GCAGATCTAACCTTCAGATGTTTATAATGAAGCCAGATCCAATATGATTTGACATTCTTGTGTTT
127 GCAGATCTAAACTTCAGATGTTTATACTGAA-ACAGATCCAAGATGATTTG-TATTCTTGTGTTT
*
65583647 ACAAGAAACAAATCGAGGACATAGTAGATTTGACTCT
190 ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCT
65583684 AAGATGTTCT
Statistics
Matches: 427, Mismatches: 34, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
237 221 0.52
238 111 0.26
239 2 0.00
240 32 0.07
241 61 0.14
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (236 bp):
CAGTATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTT
GTGTTTACAAGAAACAAATCGAGGATATAGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAG
ATCTAAACTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGTATTCTTGTGTTTACAAGA
AACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCT
Done.