Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 226 of 770
Found at i:67745478 original size:29 final size:29
Alignment explanation
Indices: 67745436--67745500 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
67745426 TCATATTCAA
*
67745436 ATGGCCCATTAGGCCCAAACCACCTGTAT
1 ATGGCCCATTAGGCCCAAACCACATGTAT
* * *
67745465 ATGGCCCATTAGGCCTAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAACCACATGTAT
67745494 ATGGCCC
1 ATGGCCC
67745501 GTTATACCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.25
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAACCACATGTAT
Found at i:67747002 original size:16 final size:16
Alignment explanation
Indices: 67746981--67747013 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
67746971 GAAAATTCAA
67746981 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
*
67746997 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
67747013 G
1 G
67747014 GGCGTTACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:67760735 original size:41 final size:41
Alignment explanation
Indices: 67760689--67760783 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
67760679 TATTCGGGCT
* * *
67760689 TTATTGCCTAGCAGGCTTTGTTCCGGTGTATTATATTAGGC
1 TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACTAGGC
67760730 TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACTAGGC
1 TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACTAGGC
67760771 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
67760784 AATTTTATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 1 0.02
41 49 0.98
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATACTAGGC
Found at i:67767342 original size:41 final size:41
Alignment explanation
Indices: 67767291--67767468 Score: 236
Period size: 41 Copynumber: 4.3 Consensus size: 41
67767281 TATTCGGGCT
* *
67767291 TTATTGCCTAGCAGGCTTTGTGCCAGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
67767332 TTATTGCCTAGCAGGCTTTGTGCCGGTTTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
67767373 TT-TTGCCTAGCAAGCTTTATATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
67767415 TTATTGCCTAGCAGGCTCTGTGCCGGTGTTTTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
67767456 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
67767469 AATTTTATGT
Statistics
Matches: 122, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
40 14 0.11
41 72 0.59
42 24 0.20
43 12 0.10
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:67767412 original size:83 final size:81
Alignment explanation
Indices: 67767294--67767469 Score: 248
Period size: 83 Copynumber: 2.1 Consensus size: 81
67767284 TCGGGCTTTA
* * *
67767294 TTGCCTAGCAGGCTTTGTGCCAGTGTATTAAATCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGT
1 TTGCCTAGCAAGCTTTATGCCAGTGTATTAAATCAGGCTTATTGCCTAGCAGGCTCTGTGCCGGT
67767359 -TTATTATA-TCAGGCTT
66 GTT-TTATACT-AGGCTT
* *
67767375 TTGCCTAGCAAGCTTTATATGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTCTGTGCCG
1 TTGCCTAGCAAGC-TT-TATGCCAGTGTATTAAATCAGGCTTATTGCCTAGCAGGCTCTGTGCCG
67767440 GTGTTTTATACTAGGCTT
64 GTGTTTTATACTAGGCTT
67767458 TATGCCTAGCAA
1 T-TGCCTAGCAA
67767470 ATTTTATGTG
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
81 12 0.14
82 2 0.02
83 58 0.68
84 13 0.15
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.36
Consensus pattern (81 bp):
TTGCCTAGCAAGCTTTATGCCAGTGTATTAAATCAGGCTTATTGCCTAGCAGGCTCTGTGCCGGT
GTTTTATACTAGGCTT
Found at i:67771529 original size:28 final size:28
Alignment explanation
Indices: 67771450--67771519 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
67771440 TATGTACGGT
* *
67771450 ACTTAGTGTGCAAGATATCGAGTGTGGC
1 ACTTAGTGTGCGAGATATCGAGTATGGC
* *
67771478 ACTTAGTGTGTGAGATATCAAGTATGGC
1 ACTTAGTGTGCGAGATATCGAGTATGGC
67771506 ACTTAGTGTGCGAG
1 ACTTAGTGTGCGAG
67771520 GCATTGAGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (28 bp):
ACTTAGTGTGCGAGATATCGAGTATGGC
Found at i:67774116 original size:14 final size:14
Alignment explanation
Indices: 67774097--67774127 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
67774087 AAGCCATTTA
67774097 TCACTCTTAAATGC
1 TCACTCTTAAATGC
67774111 TCACTCTTAAATGC
1 TCACTCTTAAATGC
67774125 TCA
1 TCA
67774128 TTTGCTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.35
Consensus pattern (14 bp):
TCACTCTTAAATGC
Found at i:67775648 original size:42 final size:43
Alignment explanation
Indices: 67775542--67775700 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
67775532 GGAATTATGA
* * *
67775542 AATCCGAGCTCGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
1 AATCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
* * *
67775585 AATCTGAACTTGTTGAGTGGTCCAATTTCATGATATATGT-AG
1 AATCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
* * * ** **
67775627 CATCTGAGCTCGTTGCA-TGGTCCGAGTTCATTATGGATGCAAG
1 AATCTGAGCTCGTTG-AGTGGTCCAAGTTCATGATATATGTGAG
* * *
67775670 AATCTAAGCTCATTGAGTGGTCCGAGTTCAT
1 AATCTGAGCTCGTTGAGTGGTCCAAGTTCAT
67775701 AATAGATGCG
Statistics
Matches: 95, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 32 0.34
43 63 0.66
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
AATCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
Found at i:67780845 original size:6 final size:6
Alignment explanation
Indices: 67780834--67780983 Score: 141
Period size: 6 Copynumber: 24.8 Consensus size: 6
67780824 AACCAAAATG
*
67780834 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGA-ATC AG-AATC
*
67780882 AGAATC AGAATC AAAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * * *
67780930 AGTATT AGTAA-C AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
67780979 AGAAT
1 AGAAT
67780984 GTGAATGCAA
Statistics
Matches: 119, Mismatches: 12, Indels: 26
0.76 0.08 0.17
Matches are distributed among these distances:
5 10 0.08
6 99 0.83
7 8 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:67780868 original size:30 final size:30
Alignment explanation
Indices: 67780834--67780958 Score: 172
Period size: 30 Copynumber: 4.4 Consensus size: 30
67780824 AACCAAAATG
67780834 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
67780864 AGAATC--AAT----ATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
67780888 AGAATCAAAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
* *
67780918 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
67780948 AGAATCAGAAT
1 AGAATCAGAAT
67780959 TACGTGACAG
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
24 20 0.24
26 3 0.04
28 3 0.04
30 58 0.69
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:67781138 original size:27 final size:26
Alignment explanation
Indices: 67781101--67781159 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
67781091 AGCAAGGCTG
* *
67781101 CCAGAACAGATATCGTGATAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
67781127 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
67781154 CCAGAA
1 CCAGAA
67781160 TTAGATAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:67781372 original size:22 final size:22
Alignment explanation
Indices: 67781340--67781397 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
67781330 TAAATACGTT
*
67781340 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
67781362 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
67781384 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
67781398 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:67781564 original size:27 final size:26
Alignment explanation
Indices: 67781485--67781567 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
67781475 TCGATCGGTC
* * *
67781485 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
67781511 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
67781538 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
67781565 AAC
1 AAC
67781568 TCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:67781830 original size:27 final size:27
Alignment explanation
Indices: 67781587--67781827 Score: 353
Period size: 27 Copynumber: 8.9 Consensus size: 27
67781577 GTACAAAATC
*
67781587 GAGGGTAAAACAGTAATTCTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAACT
* *
67781614 GAGGCTAAAACGATAATTCTGTAAA-T
1 GAGGGTAAAACGGTAATTCTGTAAACT
*
67781640 CGAGGGTAAAACAGTAATTCTGTAAACT
1 -GAGGGTAAAACGGTAATTCTGTAAACT
*
67781668 GAGGGTAAAACGGTAATTCTATAAA-T
1 GAGGGTAAAACGGTAATTCTGTAAACT
67781694 CGAGGGTAAAACGGTAATTCTGTAAACT
1 -GAGGGTAAAACGGTAATTCTGTAAACT
67781722 GAGGGTAAAACGGTAATTCTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAACT
* *
67781749 AAGGGTAAAACGATAATTCTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAACT
*
67781776 GAGGGTAAAACAGTAATTCTGTAAA-T
1 GAGGGTAAAACGGTAATTCTGTAAACT
*
67781802 CGAGGGTAAAACGGTAATTTTGTAAA
1 -GAGGGTAAAACGGTAATTCTGTAAA
67781828 TCGGGAGTAC
Statistics
Matches: 193, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
26 3 0.02
27 188 0.97
28 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAACT
Found at i:67781847 original size:54 final size:54
Alignment explanation
Indices: 67781582--67781827 Score: 395
Period size: 54 Copynumber: 4.6 Consensus size: 54
67781572 CCTCCGTACA
* * *
67781582 AAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGCTAAAACGATAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
* *
67781636 AAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTAT
1 AAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
67781690 AAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
* * *
67781744 AAA-CTAAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGT
1 AAATC-GAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
*
67781798 AAATCGAGGGTAAAACGGTAATTTTGTAAA
1 AAATCGAGGGTAAAACGGTAATTCTGTAAA
67781828 TCGGGAGTAC
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
53 1 0.01
54 177 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (54 bp):
AAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
Found at i:67783852 original size:6 final size:6
Alignment explanation
Indices: 67783841--67784027 Score: 190
Period size: 6 Copynumber: 30.8 Consensus size: 6
67783831 AACCAAAATG
*
67783841 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
67783889 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
67783938 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATC AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
67783986 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
67784028 GTGAATGCAA
Statistics
Matches: 153, Mismatches: 12, Indels: 32
0.78 0.06 0.16
Matches are distributed among these distances:
5 11 0.07
6 129 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:67783856 original size:30 final size:30
Alignment explanation
Indices: 67783820--67784027 Score: 227
Period size: 30 Copynumber: 7.1 Consensus size: 30
67783810 AAGAAACATT
* *
67783820 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
67783850 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
67783880 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
67783910 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
67783941 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* * *
67783965 ATCAGTATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
67783995 ATCAGAATTACGTG-ACAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAGAATCAGAATCAGA
67784026 AT
1 AT
67784028 GTGAATGCAA
Statistics
Matches: 154, Mismatches: 12, Indels: 23
0.81 0.06 0.12
Matches are distributed among these distances:
24 22 0.14
28 1 0.01
29 1 0.01
30 84 0.55
31 46 0.30
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:67783941 original size:85 final size:85
Alignment explanation
Indices: 67783841--67784027 Score: 347
Period size: 85 Copynumber: 2.2 Consensus size: 85
67783831 AACCAAAATG
*
67783841 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATCAGTAACAGAATCAGAAT
*
67783906 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
*
67783926 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATCAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATCAGTAACAGAATCAGAAT
67783991 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
67784011 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
67784028 GTGAATGCAA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 99 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATCAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:67784210 original size:27 final size:27
Alignment explanation
Indices: 67784145--67784202 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
67784135 AGCATGGCTG
* *
67784145 CCAGA-ACAGATATCGTGACAGAGTCA
1 CCAGATACAGATATTGTGACAGAGCCA
*
67784171 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGACAGAGCCA
67784198 CCAGA
1 CCAGA
67784203 ATTAGATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATATTGTGACAGAGCCA
Found at i:67784416 original size:22 final size:22
Alignment explanation
Indices: 67784385--67784441 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
67784375 AAATACGTTA
*
67784385 GGCACGAAGCCATAGTCAAGAT
1 GGCACAAAGCCATAGTCAAGAT
* * * *
67784407 GGCACAAAGCCATATTTAGGTT
1 GGCACAAAGCCATAGTCAAGAT
67784429 GGCACAAAGCCAT
1 GGCACAAAGCCAT
67784442 TAATAACGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (22 bp):
GGCACAAAGCCATAGTCAAGAT
Found at i:67784594 original size:27 final size:26
Alignment explanation
Indices: 67784533--67784612 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
67784523 TCGGTCAACA
* * * *
67784533 GATATTGTGACAGAGTCACCAAATACA
1 GATATTGTGGCAGAGCCACCAGA-ACT
67784560 GATATTGTGGCAGAGCCACCAGAACT
1 GATATTGTGGCAGAGCCACCAGAACT
*
67784586 GATATTTGTGGCATAGCCACCAGAACT
1 GATA-TTGTGGCAGAGCCACCAGAACT
67784613 CTTCCTCCGT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 6 0.13
27 41 0.87
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (26 bp):
GATATTGTGGCAGAGCCACCAGAACT
Found at i:67784871 original size:27 final size:27
Alignment explanation
Indices: 67784626--67784872 Score: 369
Period size: 27 Copynumber: 9.2 Consensus size: 27
67784616 CCTCCGTACA
* *
67784626 AAATCGAGGGTAAAACAGTAATTATGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
* *
67784653 AAA-CTGAGGCTAAAACGATAATTCTGT
1 AAATC-GAGGGTAAAACGGTAATTCTGT
*
67784680 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
*
67784707 AAA-CTGAGGGTAAAACAGTAATTCTGT
1 AAATC-GAGGGTAAAACGGTAATTCTGT
67784734 AAATCGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
*
67784761 AAA-CTGAGGGTAAAACGGTAATTCTAT
1 AAATC-GAGGGTAAAACGGTAATTCTGT
67784788 AAAT-GAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
67784814 AAAT-GAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
67784840 AAATCGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
67784867 AAATCG
1 AAATCG
67784873 GAGTACTTTG
Statistics
Matches: 203, Mismatches: 10, Indels: 14
0.89 0.04 0.06
Matches are distributed among these distances:
26 54 0.27
27 147 0.72
28 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (27 bp):
AAATCGAGGGTAAAACGGTAATTCTGT
Found at i:67786925 original size:30 final size:30
Alignment explanation
Indices: 67786885--67787071 Score: 219
Period size: 30 Copynumber: 6.4 Consensus size: 30
67786875 AACTAAAATG
* *
67786885 AGAATCAGAATCATAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
67786915 AGAATAAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
67786945 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
67786970 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
67787000 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
* *
67787030 AAAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
67787061 AGAATTAGAAT
1 AGAATCAGAAT
67787072 GTGAATGCAA
Statistics
Matches: 136, Mismatches: 9, Indels: 23
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.01
25 19 0.14
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 86 0.63
31 23 0.17
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:67786988 original size:85 final size:85
Alignment explanation
Indices: 67786885--67787071 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
67786875 AACTAAAATG
* *
67786885 AGAATCAGAATCATAATCAGTAACAGAATCAGAATAAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATAAGAATCAATATTAGTAACAGAATCAAAAT
*
67786950 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
*
67786970 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATAAGAATCAATATTAGTAACAGAATCAAAAT
67787035 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
*
67787055 AGAATCAGAATTAGAAT
1 AGAATCAGAATCAGAAT
67787072 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATAAGAATCAATATTAGTAACAGAATCAAAAT
CAGAATCAGAATTACGTGAC
Found at i:67787065 original size:6 final size:6
Alignment explanation
Indices: 67786885--67787046 Score: 140
Period size: 6 Copynumber: 26.8 Consensus size: 6
67786875 AACTAAAATG
* * *
67786885 AGAATC AGAATC ATAATC AGTAA-C AGAATC AGAATA AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
67786933 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
67786982 AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC
*
67787030 AAAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
67787047 TACGTGACAG
Statistics
Matches: 127, Mismatches: 14, Indels: 30
0.74 0.08 0.18
Matches are distributed among these distances:
5 11 0.09
6 105 0.83
7 8 0.06
8 3 0.02
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:67787226 original size:27 final size:26
Alignment explanation
Indices: 67787189--67787254 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
67787179 AGCATGGCTG
*
67787189 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
67787215 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
67787242 CCAGAATCAGATA
1 CCAGAA-CAGATA
67787255 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:67787259 original size:27 final size:27
Alignment explanation
Indices: 67787189--67787262 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
67787179 AGCATGGCTG
* *
67787189 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
67787215 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
67787242 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
67787263 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:67787269 original size:27 final size:27
Alignment explanation
Indices: 67787213--67787270 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
67787203 GTGACAGAGT
* * *
67787213 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
67787240 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
67787267 CACC
1 CACC
67787271 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:67787475 original size:22 final size:22
Alignment explanation
Indices: 67787427--67787485 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
67787417 GTAAATACGT
*
67787427 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
67787449 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
67787471 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
67787486 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:67787652 original size:27 final size:26
Alignment explanation
Indices: 67787573--67787655 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
67787563 TCGATCGGTC
* * *
67787573 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
67787599 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
67787626 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
67787653 AAC
1 AAC
67787656 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:67787939 original size:26 final size:27
Alignment explanation
Indices: 67787854--67788019 Score: 194
Period size: 26 Copynumber: 6.3 Consensus size: 27
67787844 GGGGCAAAAT
* * * *
67787854 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67787881 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67787908 GATAATTCTACCCTA-AGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67787934 GGTAATTCTATCCTATA-AGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67787960 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67787987 -GAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67788013 AGTAATT
1 GGTAATT
67788020 TCACAATCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 69 0.57
27 51 0.43
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67787942 original size:53 final size:54
Alignment explanation
Indices: 67787872--67788019 Score: 196
Period size: 53 Copynumber: 2.8 Consensus size: 54
67787862 TACCCCACAA
* *
67787872 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC-GATAATTCTACCCTA-AG
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTATAG
* * *
67787925 GGGTATTTTGGTAATTCTATCCTATA-AGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAG
* *
67787978 GGGTA-TTTCGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATT
67788020 TCACAATCAA
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
52 37 0.45
53 45 0.55
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (54 bp):
GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAG
Found at i:67788018 original size:79 final size:79
Alignment explanation
Indices: 67787873--67788019 Score: 233
Period size: 79 Copynumber: 1.9 Consensus size: 79
67787863 ACCCCACAAG
* **
67787873 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAAGGGGTATTTTGGTA
1 GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAAGGGGTATTTCAGTA
67787938 ATTCTATCCTATAA
66 ATTCTATCCTATAA
* *
67787952 GGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGA-AATTCTACCCTACAGGGGTATTTCAGT
1 GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA-AGGGGTATTTCAGT
67788016 AATT
65 AATT
67788020 TCACAATCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 12 0.19
79 50 0.81
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (79 bp):
GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAAGGGGTATTTCAGTA
ATTCTATCCTATAA
Found at i:67788078 original size:27 final size:27
Alignment explanation
Indices: 67788024--67788402 Score: 447
Period size: 27 Copynumber: 14.2 Consensus size: 27
67788014 GTAATTTCAC
*
67788024 AATCAAGGGTAAAA-GGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
67788050 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
67788077 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
67788104 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
67788131 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
67788158 AATCGAGGGTAAAA-AGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
67788184 AA-CTGA-GGTAAAA-TATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
67788209 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
67788236 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
67788263 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
67788290 AA-CTAAGGGTAAAACGGTGATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
67788317 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
67788344 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
67788371 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67788398 AATCG
1 AATCG
67788403 GGAGTACTTT
Statistics
Matches: 307, Mismatches: 33, Indels: 25
0.84 0.09 0.07
Matches are distributed among these distances:
25 22 0.07
26 42 0.14
27 236 0.77
28 7 0.02
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:67788103 original size:54 final size:55
Alignment explanation
Indices: 67788039--67788399 Score: 494
Period size: 54 Copynumber: 6.7 Consensus size: 55
67788029 AGGGTAAAAG
* *
67788039 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGT-AAACTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACTA
* * *
67788093 GTAATTCTGTAAATCAAGGGTAAAACGGTAATT-T-TACAAATCGAGGGTAAAACGA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA-AACT-GAGGGTAAAACTA
*
67788148 -TAATTCTGTAAATCGAGGGTAAAA-AGTAATTCTGTAAACTGA-GGTAAAA-TA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACTA
*
67788199 -TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAAC-A
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACTA
* * *
67788252 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTAAGGGTAAAAC-G
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACTA
* * *
67788306 GTGATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAA-TG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACTA
67788360 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA
67788400 TCGGGAGTAC
Statistics
Matches: 277, Mismatches: 18, Indels: 24
0.87 0.06 0.08
Matches are distributed among these distances:
51 25 0.09
52 27 0.10
53 21 0.08
54 196 0.71
55 8 0.03
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (55 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACTA
Found at i:67790422 original size:6 final size:6
Alignment explanation
Indices: 67790411--67790645 Score: 229
Period size: 6 Copynumber: 38.8 Consensus size: 6
67790401 AACCAAAATG
*
67790411 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
67790459 AGTAA-C AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * *
67790507 A-ATATT AGTAA-C AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
67790556 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATC AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
67790604 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
67790646 GTAAATGCAA
Statistics
Matches: 193, Mismatches: 14, Indels: 44
0.77 0.06 0.18
Matches are distributed among these distances:
5 16 0.08
6 160 0.83
7 13 0.07
8 4 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:67790718 original size:187 final size:187
Alignment explanation
Indices: 67790518--67790889 Score: 690
Period size: 187 Copynumber: 2.0 Consensus size: 187
67790508 ATATTAGTAA
67790518 CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGA
1 CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGA
* * *
67790583 ATCAGTATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGACAGAATCAGAATCAGAATGT
66 ATCAATATCAGTAACAGAATCAAAATCAGAATCAGAATTACGTGACAGAACCAGAATCAGAATGT
67790648 AAATGCAATCCCAACCCAATCCAGCCGTATACACCCCCGTACCAACCTTACACCAAT
131 AAATGCAATCCCAACCCAATCCAGCCGTATACACCCCCGTACCAACCTTACACCAAT
*
67790705 CAGAATTAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGA
1 CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGA
*
67790770 ATCAATATTAGTAACAGAATCAAAATCAGAATCAGAATTACGTGACAGAACCAGAATCAGAATGT
66 ATCAATATCAGTAACAGAATCAAAATCAGAATCAGAATTACGTGACAGAACCAGAATCAGAATGT
*
67790835 GAATGCAATCCCAACCCAATCCAGCCGTATACACCCCCGTACCAACCTTACACCA
131 AAATGCAATCCCAACCCAATCCAGCCGTATACACCCCCGTACCAACCTTACACCA
67790890 TGTGGGGAGA
Statistics
Matches: 179, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
187 179 1.00
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.18
Consensus pattern (187 bp):
CAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGA
ATCAATATCAGTAACAGAATCAAAATCAGAATCAGAATTACGTGACAGAACCAGAATCAGAATGT
AAATGCAATCCCAACCCAATCCAGCCGTATACACCCCCGTACCAACCTTACACCAAT
Found at i:67790721 original size:6 final size:6
Alignment explanation
Indices: 67790702--67790807 Score: 94
Period size: 6 Copynumber: 17.5 Consensus size: 6
67790692 ACCTTACACC
* * *
67790702 AATCAG AATTAG AATCAG AATTAG -GTGACAG AATCAG AATCAG AATCAG
1 AATCAG AATCAG AATCAG AATCAG AAT--CAG AATCAG AATCAG AATCAG
* *
67790751 TAA-CAG AATCAG AATCAG AATCA- ATATTAG TAA-CAG AATCAA AATCAG
1 -AATCAG AATCAG AATCAG AATCAG A-ATCAG -AATCAG AATCAG AATCAG
67790799 AATCAG AAT
1 AATCAG AAT
67790808 TACGTGACAG
Statistics
Matches: 81, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (6 bp):
AATCAG
Found at i:67790766 original size:30 final size:30
Alignment explanation
Indices: 67790730--67790832 Score: 145
Period size: 30 Copynumber: 3.4 Consensus size: 30
67790720 AATTAGGTGA
*
67790730 CAGAATCAGAATCAGAATCAGTAACAGAAT
1 CAGAATCAGAATCAGAATTAGTAACAGAAT
67790760 CAGAATCAGAATCA-ATATTAGTAACAGAAT
1 CAGAATCAGAATCAGA-ATTAGTAACAGAAT
* * *
67790790 CAAAATCAGAATCAGAATTACGTGACAGAAC
1 CAGAATCAGAATCAGAATTA-GTAACAGAAT
67790821 CAGAATCAGAAT
1 CAGAATCAGAAT
67790833 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.02
30 44 0.68
31 20 0.31
ACGTcount: A:0.50, C:0.17, G:0.16, T:0.18
Consensus pattern (30 bp):
CAGAATCAGAATCAGAATTAGTAACAGAAT
Found at i:67791015 original size:27 final size:27
Alignment explanation
Indices: 67790950--67791007 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
67790940 AGCATGGCTG
* * *
67790950 CCAGA-ACAGATATCGTGACAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
67790976 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
67791003 CCAGA
1 CCAGA
67791008 ATTAGATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:67791221 original size:22 final size:22
Alignment explanation
Indices: 67791189--67791246 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
67791179 TAAATACGTT
*
67791189 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
67791211 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
67791233 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
67791247 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:67791413 original size:27 final size:26
Alignment explanation
Indices: 67791334--67791416 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
67791324 TCGATCGGTC
* * *
67791334 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
67791360 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
67791387 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
67791414 AAC
1 AAC
67791417 GCTTCCTCGT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:67791644 original size:27 final size:27
Alignment explanation
Indices: 67791614--67791809 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
67791604 GGGGCAAAAT
* * *
67791614 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
67791641 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67791668 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67791695 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67791722 GGTAATTCTATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
67791749 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
67791776 GAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67791803 AGTAATT
1 GGTAATT
67791810 TCACAATCAA
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:67791844 original size:27 final size:27
Alignment explanation
Indices: 67791814--67792195 Score: 445
Period size: 27 Copynumber: 14.2 Consensus size: 27
67791804 GTAATTTCAC
* *
67791814 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
67791841 AATCGAGGATAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
67791868 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
67791895 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
67791922 AATCGAGGGTAAAAAGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
67791949 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
67791976 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*** *
67792003 AATCGAGGGTAAAATAATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67792030 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
67792057 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67792084 AA-CTGAGGGTAAAACGGTAATT-TGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
67792110 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * *
67792137 AA-CTGTGGGTAAAATGGTAATTATGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
67792164 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
67792191 AATCG
1 AATCG
67792196 GGAGTACTTT
Statistics
Matches: 303, Mismatches: 43, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
26 30 0.10
27 269 0.89
28 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:67792210 original size:27 final size:26
Alignment explanation
Indices: 67792180--67792266 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
67792170 GGGTAAAACA
67792180 GTAATTCTGTAAATCGGGAGTACTTTG
1 GTAATT-TGTAAATCGGGAGTACTTTG
* *
67792207 GTAATTT-TACAAGTCGAGG-GCA-TTTA
1 GTAATTTGTA-AA-TCG-GGAGTACTTTG
67792233 GTAATTTTGTAAATCGGGAGTACTTTG
1 GTAA-TTTGTAAATCGGGAGTACTTTG
67792260 GTAATTT
1 GTAATTT
67792267 TACAAGTCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
25 4 0.08
26 18 0.37
27 23 0.47
28 4 0.08
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (26 bp):
GTAATTTGTAAATCGGGAGTACTTTG
Found at i:67792212 original size:54 final size:54
Alignment explanation
Indices: 67791819--67792192 Score: 497
Period size: 54 Copynumber: 6.9 Consensus size: 54
67791809 TTCACAATCA
* * *
67791819 AGGGTAAAATGGTAATTCTGTAAATCGAGGATAAAAC-GATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAACTG
* * * * *
67791873 AGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAACGGTAATT-T-TACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA-AACT-G
* *
67791927 AGGGTAAAAAGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* * * *
67791981 AGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAATAATTCTATAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
*
67792035 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* *
67792089 AGGGTAAAACGGTAATT-TGTAAA-CTGAGGGTAAAACGGTAATTCTATAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAACTG
* * *
67792142 TGGGTAAAATGGTAATTATGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
67792193 TCGGGAGTAC
Statistics
Matches: 285, Mismatches: 27, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
52 3 0.01
53 52 0.18
54 222 0.78
55 6 0.02
56 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
Found at i:67792247 original size:53 final size:54
Alignment explanation
Indices: 67792178--67792292 Score: 214
Period size: 53 Copynumber: 2.1 Consensus size: 54
67792168 GAGGGTAAAA
67792178 CAGTAATTCTGTAAATCGGGAGTACTTTGGTAATTTTACAAGTCGAGGGCATTT
1 CAGTAATTCTGTAAATCGGGAGTACTTTGGTAATTTTACAAGTCGAGGGCATTT
*
67792232 -AGTAATTTTGTAAATCGGGAGTACTTTGGTAATTTTACAAGTCGAGGGCATTT
1 CAGTAATTCTGTAAATCGGGAGTACTTTGGTAATTTTACAAGTCGAGGGCATTT
67792285 CAGTAATT
1 CAGTAATT
67792293 GGTAAACTAA
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
53 52 0.88
54 7 0.12
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (54 bp):
CAGTAATTCTGTAAATCGGGAGTACTTTGGTAATTTTACAAGTCGAGGGCATTT
Found at i:67792290 original size:27 final size:26
Alignment explanation
Indices: 67792207--67792292 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
67792197 GAGTACTTTG
67792207 GTAATTTTACAAGTCGAGGGCATTTA
1 GTAATTTTACAAGTCGAGGGCATTTA
** * * *
67792233 GTAATTTTGTAAATCG-GGAGTACTTTG
1 GTAATTTTACAAGTCGAGG-GCA-TTTA
67792260 GTAATTTTACAAGTCGAGGGCATTTCA
1 GTAATTTTACAAGTCGAGGGCATTT-A
67792287 GTAATT
1 GTAATT
67792293 GGTAAACTAA
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
25 2 0.04
26 18 0.39
27 24 0.52
28 2 0.04
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.37
Consensus pattern (26 bp):
GTAATTTTACAAGTCGAGGGCATTTA
Found at i:67794212 original size:21 final size:21
Alignment explanation
Indices: 67794188--67794236 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
67794178 GTGTAAAATG
*
67794188 TAAAAGTTGTCTGCTATATGT
1 TAAAAGTTGTATGCTATATGT
*
67794209 TAAAAGCTGTATGCTATATGT
1 TAAAAGTTGTATGCTATATGT
67794230 TAAAAGT
1 TAAAAGT
67794237 GCCTATTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (21 bp):
TAAAAGTTGTATGCTATATGT
Found at i:67804085 original size:27 final size:28
Alignment explanation
Indices: 67804029--67804098 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
67804019 AAATTTGTAC
67804029 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
67804057 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
67804084 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67804099 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:67804109 original size:27 final size:27
Alignment explanation
Indices: 67804029--67804110 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
67804019 AAATTTGTAC
* *
67804029 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
67804057 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
67804084 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
67804111 GCTTTGAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:67808425 original size:40 final size:40
Alignment explanation
Indices: 67808380--67808547 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
67808370 CGGAATATAA
67808380 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
67808420 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67808460 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
67808500 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67808540 CCGGATAT
1 CCGGATAT
67808548 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67812061 original size:40 final size:40
Alignment explanation
Indices: 67812016--67812182 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
67812006 CGGAATATAA
67812016 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
67812056 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67812096 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67812136 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67812175 CCGGATAT
1 CCGGATAT
67812183 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67822229 original size:15 final size:15
Alignment explanation
Indices: 67822211--67822239 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
67822201 GATTTAATGT
67822211 GTTAAAATGATATAA
1 GTTAAAATGATATAA
67822226 GTTAAAATGATATA
1 GTTAAAATGATATA
67822240 CTTTGGCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (15 bp):
GTTAAAATGATATAA
Found at i:67823419 original size:25 final size:25
Alignment explanation
Indices: 67823385--67823435 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
67823375 TAATAAAGTA
67823385 TGAGAATGGTAAAAATTTTATGTGG
1 TGAGAATGGTAAAAATTTTATGTGG
*
67823410 TGAGAATGGTAAAAGTTTTATGTGG
1 TGAGAATGGTAAAAATTTTATGTGG
67823435 T
1 T
67823436 TAAATACGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.37
Consensus pattern (25 bp):
TGAGAATGGTAAAAATTTTATGTGG
Found at i:67834527 original size:40 final size:40
Alignment explanation
Indices: 67834435--67834527 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
67834425 GACTATGTTC
* *
67834435 GGCACTAAGTTTGCGATTTGAAATAGCTTCGGCTATAAATA
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTAT-AATA
* * * *
67834476 -GCACCACGTGTGCGAATTGGAATAGCTTTGGCTAT-ATGA
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAT-A
67834515 GGCACTAAGTGTG
1 GGCACTAAGTGTG
67834528 TGATACCAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.05
39 1 0.02
40 39 0.93
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAATA
Found at i:67838089 original size:40 final size:40
Alignment explanation
Indices: 67838023--67838173 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
67838013 AAATTGAATG
* *
67838023 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
67838062 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
**
67838102 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
67838142 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
67838174 ACATGCTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:67838187 original size:40 final size:39
Alignment explanation
Indices: 67838060--67838189 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
67838050 ATGCTGGAAA
* * *
67838060 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
67838101 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
67838139 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
67838180 TTATATCCGG
1 TTATATCCGG
67838190 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:67841458 original size:41 final size:41
Alignment explanation
Indices: 67841413--67841530 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67841403 TGAAAGATAA
67841413 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67841454 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67841484 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67841525 ATGTAG
1 ATGTAG
67841531 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67841469 original size:71 final size:71
Alignment explanation
Indices: 67841381--67841544 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67841371 GAGATGTATC
67841381 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67841446 AGGACA
66 AGGACA
67841452 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67841517 AGGACA
66 AGGACA
67841523 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67841545 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67848800 original size:40 final size:40
Alignment explanation
Indices: 67848734--67848884 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
67848724 AAATTGAATG
* * *
67848734 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67848773 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
67848813 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
67848853 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
67848885 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67848898 original size:40 final size:40
Alignment explanation
Indices: 67848771--67848900 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
67848761 ATGCTGGAAA
* * *
67848771 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
67848811 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
67848851 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
67848891 TTATATCCGG
1 TTATATCCGG
67848901 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:67858293 original size:79 final size:82
Alignment explanation
Indices: 67858153--67858337 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
67858143 TCGAATGATG
* * *
67858153 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
67858217 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
67858233 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
67858295 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
67858313 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67858338 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:67858345 original size:40 final size:40
Alignment explanation
Indices: 67858154--67858345 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
67858144 CGAATGATGT
* * * * *
67858154 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
67858194 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
67858234 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
67858273 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
67858313 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
67858346 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:67858368 original size:79 final size:79
Alignment explanation
Indices: 67858153--67858370 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
67858143 TCGAATGATG
* * * * ** *
67858153 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
67858216 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
67858233 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
67858298 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
67858313 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
67858371 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:67865076 original size:50 final size:49
Alignment explanation
Indices: 67864982--67865082 Score: 125
Period size: 50 Copynumber: 2.0 Consensus size: 49
67864972 TGGAAATTAT
* *
67864982 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GCTACATCCGGGCTA
*
67865032 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-CATTCTATCCGGGCTA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGC-TAC-ATCCGGGCTA
67865082 A
1 A
67865083 GACCCGAAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
48 1 0.02
49 5 0.11
50 39 0.87
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.22
Consensus pattern (49 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGCTACATCCGGGCTA
Found at i:67865115 original size:40 final size:40
Alignment explanation
Indices: 67865032--67865117 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
67865022 ATCCGGGCTA
* * **
67865032 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
67865072 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
67865112 ATCCGG
1 ATCCGG
67865118 TTAAGTCCCG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:67869774 original size:6 final size:6
Alignment explanation
Indices: 67869756--67869812 Score: 64
Period size: 6 Copynumber: 9.3 Consensus size: 6
67869746 AAGAAACATT
*
67869756 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
67869805 ATCAGA AT
1 ATCAGA AT
67869813 AAGTATTAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
5 2 0.05
6 37 0.84
7 4 0.09
8 1 0.02
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:67869777 original size:18 final size:18
Alignment explanation
Indices: 67869756--67869812 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
67869746 AAGAAACATT
67869756 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
67869774 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
*
67869791 GTGACAGAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
67869811 AT
1 AT
67869813 AAGTATTAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 1 0.03
18 15 0.45
19 16 0.48
20 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:67869803 original size:31 final size:31
Alignment explanation
Indices: 67869765--67869843 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
67869755 TATCAGAACT
* *
67869765 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATAAGAATCAGGTAAC
* *
67869796 AGAATCAGAATCAGAATAAGTATTAGGTAAC
1 AGAATCAGAATCAGAATAAGAATCAGGTAAC
* *
67869827 ATAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
67869844 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATAAGAATCAGGTAAC
Found at i:67869995 original size:27 final size:27
Alignment explanation
Indices: 67869958--67870024 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
67869948 AGCATTGCTG
*
67869958 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGACAGAGCCA
* *
67869984 CCAGATACAGATATTTGTGGCATAGCCA
1 CCAGA-ACAGATATTTGTGACAGAGCCA
67870012 CCAGAATCAGATA
1 CCAGAA-CAGATA
67870025 ATATGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.14
27 8 0.23
28 22 0.63
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGACAGAGCCA
Found at i:67870633 original size:27 final size:27
Alignment explanation
Indices: 67870603--67871095 Score: 594
Period size: 27 Copynumber: 18.3 Consensus size: 27
67870593 GGGGCAAAAT
* *
67870603 GGTAATTTTACCCTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* **
67870630 GGTAATTCTACCTTACAGGGGTAAATC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67870657 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67870684 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67870711 GGTAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67870738 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67870765 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67870792 GGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67870819 AGTAATTATACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67870846 GATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67870873 AGTAATTATACCCTACCGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67870900 GATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67870927 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
67870954 AATAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67870981 GGTAATTCTACCCTACAGGGATA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67871007 TTGTAATTCTACCTTACATGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
**
67871035 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67871062 GTTAATTCTACCTTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67871089 GGTAATT
1 GGTAATT
67871096 TTGTAAATCG
Statistics
Matches: 393, Mismatches: 70, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
26 3 0.01
27 385 0.98
28 5 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67870670 original size:54 final size:54
Alignment explanation
Indices: 67870604--67871095 Score: 655
Period size: 54 Copynumber: 9.1 Consensus size: 54
67870594 GGGCAAAATG
* * **
67870604 GTAATTTTACCCTA-AGAGGGTATCTCGGTAATTCTACCTTACAGGGGTAAATCA
1 GTAATTCTACCCTACAG-GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * *
67870658 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
*
67870712 GTAATTCTACCCTACAGTGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * *
67870766 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * *
67870820 GTAATTATACCCTATAGGGGTATTTCGATAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * * * *
67870874 GTAATTATACCCTACCGGGGTATTTCGATAATTCTACCATACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* ** * * *
67870928 GTAATTCTACCTTACAGGGGTATTTCAATAATTCTACCCTACAGTGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
* * *
67870982 GTAATTCTACCCTACAGGGATA-TTCTTGTAATTCTACCTTACATGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCTTACAGGGGTATTTCA
* * * *
67871036 ATAATTCTACCCTACAGGGGTATTTCGTTAATTCTACCTTACAGGGGTGTTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
67871090 GTAATT
1 GTAATT
67871096 TTGTAAATCG
Statistics
Matches: 386, Mismatches: 49, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
53 3 0.01
54 379 0.98
55 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
Found at i:67871202 original size:27 final size:27
Alignment explanation
Indices: 67871143--67871314 Score: 75
Period size: 27 Copynumber: 6.4 Consensus size: 27
67871133 GGGGTACTTT
*
67871143 GGTAATTTTACAAGTAGAGGGTATTTC
1 GGTAATTTTACAAGTAGAGGATATTTC
** * * *
67871170 AATAATTTTGCAGGTCGAGGATATTTC
1 GGTAATTTTACAAGTAGAGGATATTTC
* * *
67871197 GGTAATTTCACATA-TCAG-GGGTATTTT
1 GGTAATTTTACA-AGT-AGAGGATATTTC
* * * *
67871224 GGTAATTCTACAAACTAG-GGGTATTTT
1 GGTAATTTTAC-AAGTAGAGGATATTTC
* ** * *
67871251 GATAATTTTACAAACCA-AGGGTATTTT
1 GGTAATTTTAC-AAGTAGAGGATATTTC
* * *
67871278 GGTAATTTTACAAACTAG-GGGTATTTT
1 GGTAATTTTAC-AAGTAGAGGATATTTC
67871305 GGTAATTTTA
1 GGTAATTTTA
67871315 TAAACCAATG
Statistics
Matches: 118, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
27 115 0.97
28 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAGTAGAGGATATTTC
Found at i:67871276 original size:81 final size:81
Alignment explanation
Indices: 67871131--67871529 Score: 424
Period size: 81 Copynumber: 4.9 Consensus size: 81
67871121 TTCTGTAAAT
* ** ** * *** * *
67871131 CAGGGGTACTTTGGTAATTTTAC-AAGTAGAGGGTATTTCAATAATTTTGCAGGTCGAGGATATT
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGATAATTTTACAAACCAAGGGTATT
* * * *
67871195 TCGGTAATTTCACATAT
65 TTGGTAATTTTACAAAC
* *
67871212 CAGGGGTATTTTGGTAATTCTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
67871277 TGGTAATTTTACAAAC
66 TGGTAATTTTACAAAC
* * ** *
67871293 TAGGGGTATTTTGGTAATTTTATAAACCAATGGTATTTT-AGTAATTTTACAAACCAGGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGA-TAATTTTACAAACCAAGGGTATT
* **
67871357 TTCGTAATTTTGTAAAC
65 TTGGTAATTTTACAAAC
* * * * * *
67871374 CAAGGGTATTTTTGTAATTTTACAAACCAGGGGGTATTTTGGTGATTTTATAAACCAAGAGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACCA-GGGGTATTTTGATAATTTTACAAACCAAGGGTATT
*
67871439 TTAGTAATTTTACAAAC
65 TTGGTAATTTTACAAAC
** * * *
67871456 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
67871521 TGGTAATTT
66 TGGTAATTT
67871530 GGTAAACTAA
Statistics
Matches: 265, Mismatches: 49, Indels: 8
0.82 0.15 0.02
Matches are distributed among these distances:
80 1 0.00
81 193 0.73
82 71 0.27
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
TGGTAATTTTACAAAC
Found at i:67871536 original size:27 final size:27
Alignment explanation
Indices: 67871191--67871529 Score: 435
Period size: 27 Copynumber: 12.5 Consensus size: 27
67871181 AGGTCGAGGA
* * * *
67871191 TATTTCGGTAATTTCACATATCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
67871218 TATTTTGGTAATTCTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
67871245 TATTTTGATAATTTTACAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67871272 TATTTTGGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* **
67871299 TATTTTGGTAATTTTATAAACCAATGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67871326 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* ** *
67871353 TATTTTCGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67871380 TATTTTTGTAATTTTACAAACCAGGGGG
1 TATTTTGGTAATTTTACAAACCA-GGGG
* * * *
67871408 TATTTTGGTGATTTTATAAACCAAGAG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67871435 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
** *
67871462 TATTTTGGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
67871489 TATTTTGGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
67871516 TATTTTGGTAATTT
1 TATTTTGGTAATTT
67871530 GGTAAACTAA
Statistics
Matches: 265, Mismatches: 46, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
27 242 0.91
28 23 0.09
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAACCAGGGG
Found at i:67871536 original size:54 final size:54
Alignment explanation
Indices: 67871215--67871529 Score: 495
Period size: 54 Copynumber: 5.8 Consensus size: 54
67871205 CACATATCAG
* * * *
67871215 GGGTATTTTGGTAATTCTACAAACTAGGGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
67871269 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
* * * *
67871323 TGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTCGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
* *
67871377 GGGTATTTTTGTAATTTTACAAACCAGGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCA-GGGGTATTTTGGTAATTTTATAAACCAA
* * *
67871432 GAGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
67871486 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
67871530 GGTAAACTAA
Statistics
Matches: 241, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
54 192 0.80
55 49 0.20
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:67873370 original size:39 final size:40
Alignment explanation
Indices: 67873270--67873472 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
67873260 TCGAATGATG
* *
67873270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
67873310 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
67873349 TTCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
67873389 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-TATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
67873428 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
67873468 TCCGG
1 TCCGG
67873473 TTAAATTCTG
Statistics
Matches: 141, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 67 0.48
40 65 0.46
41 7 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:67873460 original size:79 final size:80
Alignment explanation
Indices: 67873271--67873476 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 80
67873261 CGAATGATGT
* * **
67873271 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
*
67873335 GTGCGAGTTACTAATT
65 GTGCGAGTTACTAATA
* * *
67873351 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATTC
67873414 GTGCGAGTTA-T-ATAA
65 GTGCGAGTTACTAAT-A
* **
67873429 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAA
67873477 ATTCTGAAGG
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.02
78 20 0.19
79 69 0.64
80 17 0.16
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTCG
TGCGAGTTACTAATA
Found at i:67876786 original size:6 final size:6
Alignment explanation
Indices: 67876768--67876830 Score: 67
Period size: 6 Copynumber: 10.3 Consensus size: 6
67876758 AAGAAACATT
* *
67876768 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
67876817 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
67876831 AAGTATTAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 2 0.04
6 42 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:67876819 original size:31 final size:31
Alignment explanation
Indices: 67876782--67876861 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
67876772 GAACTAGAAT
* *
67876782 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATAAGAATTAGGTAA
*
67876813 CAGAATCAGAATCAGAATAAGTATTAGGTAA
1 CAGAATCAGAATCAGAATAAGAATTAGGTAA
* *
67876844 CATAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
67876862 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.21
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATAAGAATTAGGTAA
Found at i:67877031 original size:28 final size:26
Alignment explanation
Indices: 67876975--67877057 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 26
67876965 CAGCATTGCT
* * *
67876975 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGGCAAAGCC
*
67877001 ACCAGATACAGATATTTGTGGCATAGCC
1 ACCAGA-ACAGATA-TTGTGGCAAAGCC
*
67877029 ACCAGAATCAGATAATGTGGCAAAGCC
1 ACCAGAA-CAGATATTGTGGCAAAGCC
67877056 AC
1 AC
67877058 TTAACAGAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
26 6 0.12
27 21 0.43
28 22 0.45
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAAAGCC
Found at i:67877263 original size:22 final size:22
Alignment explanation
Indices: 67877215--67877266 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
67877205 GTAAATACAT
*
67877215 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
67877237 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
67877259 TTGGCACA
1 TTGGCACA
67877267 GATCGATCCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:67877545 original size:27 final size:27
Alignment explanation
Indices: 67877515--67878007 Score: 567
Period size: 27 Copynumber: 18.3 Consensus size: 27
67877505 AGGGCAAAAT
* *
67877515 GGTAATTTTACCCTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* **
67877542 GGTAATTCTACCTTACAGGGGTAAATC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
67877569 AGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67877596 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67877623 GGTAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67877650 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67877677 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
67877704 AGTAATTCTACCTTATACGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * * *
67877731 AATAATTATACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67877758 GATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67877785 AGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67877812 GATAATTCTACCATACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67877839 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
67877866 AATAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67877893 GGTAATTCTACCCTACAGGGATA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67877919 TTGTAATTCTACCTTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
***
67877947 AACAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67877974 GTTAATTCTACCTTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67878001 GGTAATT
1 GGTAATT
67878008 TTGTAAATCG
Statistics
Matches: 397, Mismatches: 66, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
26 3 0.01
27 389 0.98
28 5 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67878114 original size:27 final size:27
Alignment explanation
Indices: 67878055--67878121 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
67878045 GGGGTACTTT
*
67878055 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAGTCGAGGATATTTC
** * *
67878082 AATAATTTTGCAGGTCGAGGATATTTC
1 GGTAATTTTACAAGTCGAGGATATTTC
*
67878109 GGTAATTTCACAA
1 GGTAATTTTACAA
67878122 ATTAGGGGTA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACAAGTCGAGGATATTTC
Found at i:67878158 original size:81 final size:81
Alignment explanation
Indices: 67878039--67878441 Score: 251
Period size: 81 Copynumber: 5.0 Consensus size: 81
67878029 GTAATTCTGT
* * * * * * *** *
67878039 AAATCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTGCAGGTCGAGGAT
1 AAATTAGGGGTATTTTGGTAATTCTACAACTAGAGGGTATTTCAATAATTTTACAAACCAAGGAT
67878104 ATTTCGGTAATTTCAC
66 ATTTCGGTAATTTCAC
** *
67878120 AAATTAGGGGTATTTTGGTAATTCTACGAACTAG-GGGTATTTTGATAATTTTACAAACCAAGGG
1 AAATTAGGGGTATTTTGGTAATTCTAC-AACTAGAGGGTATTTCAATAATTTTACAAACCAAGGA
* *
67878184 TATTTTGGTAATTTTAC
65 TATTTCGGTAATTTCAC
* * * * * * * *
67878201 AAACTAGGGGTATTTTGGTAATTTTATAAACCA-AGGGTATTTTAGTAATTTTACAAACCAGGGG
1 AAATTAGGGGTATTTTGGTAATTCTA-CAACTAGAGGGTATTTCAATAATTTTACAAACCAAGGA
***
67878265 TATTTTC-GTAATTTTGT
65 TA-TTTCGGTAATTTCAC
** * * * * *** * *
67878282 AAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGGTATTTTGGTGATTTTATAAACCAAGTG
1 AAATTAGGGGTATTTTGGTAATTCTAC-AACTAGAGGGTATTTCAATAATTTTACAAACCAAG-G
** *
67878347 -TATTTTAGTAATTTTAC
64 ATATTTCGGTAATTTCAC
** * * *** *
67878364 AAACCAGGGGTATTTTGGTAATTTTGTA-AACCA-AGGGTATTTTGGTAATTTTACAAACCAGGG
1 AAATTAGGGGTATTTTGGTAA--TTCTACAACTAGAGGGTATTTCAATAATTTTACAAACCAAGG
* *
67878427 GTATTTTGGTAATTT
64 ATATTTCGGTAATTT
67878442 GATAAACTAA
Statistics
Matches: 268, Mismatches: 43, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
80 1 0.00
81 196 0.73
82 66 0.25
83 1 0.00
84 4 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
AAATTAGGGGTATTTTGGTAATTCTACAACTAGAGGGTATTTCAATAATTTTACAAACCAAGGAT
ATTTCGGTAATTTCAC
Found at i:67878161 original size:54 final size:54
Alignment explanation
Indices: 67878127--67878448 Score: 509
Period size: 54 Copynumber: 5.9 Consensus size: 54
67878117 CACAAATTAG
* * * * *
67878127 GGGTATTTTGGTAATTCTACGAACTAGGGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
67878181 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
* * *
67878235 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTCGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
67878289 GGGTATTTTGGTAATTTTACAAACCAGGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCA-GGGGTATTTTGGTAATTTTATAAACCAA
* * *
67878344 GTGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
67878398 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAAC
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAC
67878449 TAAAGTATTC
Statistics
Matches: 247, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
54 198 0.80
55 49 0.20
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:67878448 original size:27 final size:27
Alignment explanation
Indices: 67878103--67878441 Score: 444
Period size: 27 Copynumber: 12.5 Consensus size: 27
67878093 AGGTCGAGGA
* * **
67878103 TATTTCGGTAATTTCACAAATTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * *
67878130 TATTTTGGTAATTCTACGAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
67878157 TATTTTGATAATTTTACAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67878184 TATTTTGGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
67878211 TATTTTGGTAATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67878238 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* ** *
67878265 TATTTTCGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
67878292 TATTTTGGTAATTTTACAAACCAGGGGG
1 TATTTTGGTAATTTTACAAACCA-GGGG
* * * *
67878320 TATTTTGGTGATTTTATAAACCAAGTG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67878347 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
** *
67878374 TATTTTGGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
67878401 TATTTTGGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
67878428 TATTTTGGTAATTT
1 TATTTTGGTAATTT
67878442 GATAAACTAA
Statistics
Matches: 268, Mismatches: 43, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
27 244 0.91
28 24 0.09
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAACCAGGGG
Found at i:67880448 original size:24 final size:24
Alignment explanation
Indices: 67880416--67880502 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
67880406 AATCTCAAAT
67880416 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
67880440 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
67880464 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
67880488 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
67880503 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:67880468 original size:48 final size:48
Alignment explanation
Indices: 67880416--67880524 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
67880406 AATCTCAAAT
** *
67880416 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
67880464 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
67880512 GCACTATGTGTGC
1 GCACTATGTGTGC
67880525 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:67880515 original size:24 final size:24
Alignment explanation
Indices: 67880416--67880524 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
67880406 AATCTCAAAT
*
67880416 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
67880440 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
67880464 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
67880488 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
67880512 GCACTATGTGTGC
1 GCACTATGTGTGC
67880525 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:67883481 original size:6 final size:6
Alignment explanation
Indices: 67883463--67883528 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
67883453 AAGAAACATT
*
67883463 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
67883512 ATCAAA ATCAGA ATCAG
1 ATCAGA ATCAGA ATCAG
67883529 TATTAGGTAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
5 2 0.04
6 44 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:67883514 original size:31 final size:31
Alignment explanation
Indices: 67883477--67883556 Score: 115
Period size: 31 Copynumber: 2.6 Consensus size: 31
67883467 GAACTAGAAT
* *
67883477 CAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
* *
67883508 CAGAATCAAAATCAGAATCAGTATTAGGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
*
67883539 CATAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
67883557 ATGAATGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:67883726 original size:28 final size:26
Alignment explanation
Indices: 67883671--67883752 Score: 92
Period size: 28 Copynumber: 3.0 Consensus size: 26
67883661 AGCATTGCTG
* * *
67883671 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
*
67883697 CCAGATACAGATATTTGTGGCATAGCCA
1 CCAGA-ACAGATA-TTGTGGCAAAGCCA
*
67883725 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
67883752 C
1 C
67883753 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 21 0.44
28 22 0.46
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:67884346 original size:27 final size:27
Alignment explanation
Indices: 67884316--67884808 Score: 567
Period size: 27 Copynumber: 18.3 Consensus size: 27
67884306 GAGGCAAAAT
* *
67884316 GGTAATTTTACCCTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* ** **
67884343 GGTAATTCTACCTTACAAAGGTAAATC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67884370 GGTAATTCTAACCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67884397 GGTAATTCTAACCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67884424 GGTAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67884451 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67884478 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67884505 GGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67884532 AGTAATTATACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67884559 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
67884586 AGTAATTATACCCTACAAGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67884613 GATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67884640 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
67884667 AATAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67884694 AGTAATTCTACCCTACAGGGATA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67884720 TTGTAATTCTACCTTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
** *
67884748 AATAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67884775 GTTAATTCTACCTTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67884802 GGTAATT
1 GGTAATT
67884809 TTGTAAATCG
Statistics
Matches: 398, Mismatches: 65, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
26 3 0.01
27 391 0.98
28 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67884888 original size:27 final size:27
Alignment explanation
Indices: 67884858--67884935 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
67884848 GGTACTTTGG
67884858 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * * **
67884885 TAATTTTGCAGGTCGAGGATATTTCGG
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
67884912 TAATTTCACAAATC-AGGGGTATTT
1 TAATTTTACAAGTCGA-GGGTATTT
67884936 TGGTAATTCT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:67884940 original size:27 final size:27
Alignment explanation
Indices: 67884904--67885187 Score: 388
Period size: 27 Copynumber: 10.5 Consensus size: 27
67884894 AGGTCGAGGA
* * *
67884904 TATTTCGGTAATTTCACAAATCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
67884931 TATTTTGGTAATTCTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
67884958 TATTTTGATAATTTTACAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
67884985 TATTTTGGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* ** *
67885012 TATTTTCGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67885039 TATTTTGGTAATTTTACAAACCAGGTG
1 TATTTTGGTAATTTTACAAACCAGGGG
* * *
67885066 TATTTTGGTGATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67885093 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
** *
67885120 TATTTTGGTAATTTTGTAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
67885147 TATTTTGGTAATTTTACAAACCAGAGG
1 TATTTTGGTAATTTTACAAACCAGGGG
67885174 TATTTTGGTAATTT
1 TATTTTGGTAATTT
67885188 GGTAAACTAA
Statistics
Matches: 221, Mismatches: 36, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 221 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAACCAGGGG
Found at i:67885187 original size:81 final size:81
Alignment explanation
Indices: 67884790--67885187 Score: 404
Period size: 81 Copynumber: 4.9 Consensus size: 81
67884780 TTCTACCTTA
* * * * * *** * * * *
67884790 CAGGGGTGTTTCGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAGGGGTACTT
1 CAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
**
67884855 TGGTAATTTTACAAGT
66 TGGTAATTTTACAAAC
*** *** * * * * *
67884871 C-GAGGGTATTTCAATAATTTTGCAGGTCGAGGATATTTCGGTAATTTCACAAATCAGGGGTATT
1 CAG-GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATT
*
67884935 TTGGTAATTCTACAAAC
65 TTGGTAATTTTACAAAC
* * *
67884952 TAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
* **
67885017 TCGTAATTTTGTAAAC
66 TGGTAATTTTACAAAC
* * * * *
67885033 CAAGGGTATTTTGGTAATTTTACAAACC-AGGTGTATTTTGGTGATTTTATAAACCAAGGGTATT
1 CAGGGGTATTTTGGTAATTTTGCAAACCAAGG-GTATTTTGGTAATTTTACAAACCAGGGGTATT
*
67885097 TTAGTAATTTTACAAAC
65 TTGGTAATTTTACAAAC
* *
67885114 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGAGGTATTT
1 CAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
67885179 TGGTAATTT
66 TGGTAATTT
67885188 GGTAAACTAA
Statistics
Matches: 262, Mismatches: 51, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
80 4 0.02
81 254 0.97
82 4 0.02
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
TGGTAATTTTACAAAC
Found at i:67885194 original size:108 final size:107
Alignment explanation
Indices: 67884928--67885187 Score: 430
Period size: 108 Copynumber: 2.4 Consensus size: 107
67884918 CACAAATCAG
* * * * *
67884928 GGGTATTTTGGTAATTCTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCA-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
67884993 TAATTTTACAAACCAGGGGTATTTTCGTAATTTTGTAAACCAA
65 TAATTTTACAAACCAGGGGTATTTTCGTAATTTTGTAAACCAA
*
67885036 GGGTATTTTGGTAATTTTACAAACCAGGTGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAGG-GTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
*
67885101 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
65 TAATTTTACAAACCAGGGGTATTTTCGTAATTTTGTAAACCAA
67885144 GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACCAG-GGTATTTTGGTAATTT
67885188 GGTAAACTAA
Statistics
Matches: 142, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
107 2 0.01
108 139 0.98
109 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (107 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGT
AATTTTACAAACCAGGGGTATTTTCGTAATTTTGTAAACCAA
Found at i:67887172 original size:93 final size:93
Alignment explanation
Indices: 67887059--67887230 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
67887049 CGCCCATAAG
* * *
67887059 CGAACTCGTACTCAACTCAACGAACTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67887124 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
** *
67887152 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAGCTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67887217 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67887231 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67887227 original size:46 final size:46
Alignment explanation
Indices: 67887052--67887227 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
67887042 TGTAACCCGC
* ** * *
67887052 CCATAAGCGAACTCGTACTCAACTCAACGAACTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67887098 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
67887148 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67887191 CCATAAGTGAGCTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67887228 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67887246 original size:46 final size:44
Alignment explanation
Indices: 67887103--67887246 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
67887093 CGCATCCATA
67887103 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
67887150 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
67887196 AGTGAGCTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
67887242 AGTGA
1 AGTGA
67887247 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:67889424 original size:42 final size:41
Alignment explanation
Indices: 67889333--67889505 Score: 267
Period size: 41 Copynumber: 4.2 Consensus size: 41
67889323 TTTCTGAATC
*
67889333 AATGAAAAGGTTGAAAAGGATGTTATCCAAAATGGATATAA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATAA
*
67889374 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAATGATATAA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATAA
* * *
67889415 AATTAAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCA
1 AA-TGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATAA
*
67889457 AATGAAAAGGTTGAAAAGGATTTTATCCAAAAAGGATA-ACA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATA-A
67889498 AATGAAAA
1 AATGAAAA
67889506 TGATGTATTT
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
41 83 0.69
42 37 0.31
ACGTcount: A:0.51, C:0.06, G:0.20, T:0.23
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATAA
Found at i:67889437 original size:83 final size:83
Alignment explanation
Indices: 67889337--67889494 Score: 273
Period size: 83 Copynumber: 1.9 Consensus size: 83
67889327 TGAATCAATG
67889337 AAAAGGTTGAAAAGGATGTTATCC-AAAATGGATATAAAATGAAAAGGTTGAAAAGGATGTTATC
1 AAAAGGTTGAAAAGGATGTTATCCGAAAA-GGATATAAAATGAAAAGGTTGAAAAGGATGTTATC
*
67889401 CAAAAATGATATAAAATTA
65 CAAAAAGGATATAAAATTA
* *
67889420 AAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCAAATGAAAAGGTTGAAAAGGATTTTATCC
1 AAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATAAAATGAAAAGGTTGAAAAGGATGTTATCC
67889485 AAAAAGGATA
66 AAAAAGGATA
67889495 ACAAATGAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
83 67 0.94
84 4 0.06
ACGTcount: A:0.49, C:0.06, G:0.21, T:0.24
Consensus pattern (83 bp):
AAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATAAAATGAAAAGGTTGAAAAGGATGTTATCC
AAAAAGGATATAAAATTA
Found at i:67890617 original size:19 final size:18
Alignment explanation
Indices: 67890590--67890627 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
67890580 TGACCCTTGC
*
67890590 TTCCTAAATTTTCATATTT
1 TTCCAAAATTTTCA-ATTT
67890609 TTCCAAAATTTTCAATTT
1 TTCCAAAATTTTCAATTT
67890627 T
1 T
67890628 GTTTCAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (18 bp):
TTCCAAAATTTTCAATTT
Found at i:67902027 original size:8 final size:8
Alignment explanation
Indices: 67902010--67902047 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
67902000 AGTCAAGCAT
67902010 AGAA-AAG
1 AGAAGAAG
67902017 AGAAGAAG
1 AGAAGAAG
*
67902025 AGAAGATG
1 AGAAGAAG
67902033 AGAAGAAG
1 AGAAGAAG
*
67902041 AGGAGAA
1 AGAAGAA
67902048 CGATATCTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
7 4 0.15
8 23 0.85
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.03
Consensus pattern (8 bp):
AGAAGAAG
Found at i:67908186 original size:40 final size:40
Alignment explanation
Indices: 67908112--67908322 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
67908102 TCTTCGGAAT
** * *
67908112 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
67908150 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
67908190 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCTGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
67908230 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
67908270 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
67908310 TTAGCCCGGATAT
1 TTAGCCCGGATAT
67908323 CATTTGAATA
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 125 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:67919849 original size:38 final size:38
Alignment explanation
Indices: 67919779--67919968 Score: 220
Period size: 38 Copynumber: 4.9 Consensus size: 38
67919769 ATTTGATGTG
*
67919779 TATCCGGGCTTAAAGAT-CCGCAGGCTTTGTGCTGGTATTA
1 TATCCGGG-TT-AA-ATCCCGCAGGCTTCGTGCTGGTATTA
**
67919819 TATCCGGGTTAAATCCCATAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
*
67919857 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
** *
67919895 TATTAGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * * *
67919933 TATTCGAGCTTAAAGTCCCGTAGGTTTTGTGCTGGT
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
67919969 GACTGGATTC
Statistics
Matches: 132, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
37 2 0.02
38 96 0.73
39 8 0.06
40 26 0.20
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:67925060 original size:45 final size:45
Alignment explanation
Indices: 67924997--67925263 Score: 430
Period size: 45 Copynumber: 6.0 Consensus size: 45
67924987 CAGAATTCAT
* * *
67924997 TCACCGACATT-TCGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATA
*
67925041 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
* *
67925086 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
* *
67925131 TCACCGGCATTACAGCCTACTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
67925176 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
*
67925221 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
67925264 CTGTACGATA
Statistics
Matches: 207, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
44 13 0.06
45 194 0.94
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
Found at i:67926146 original size:26 final size:25
Alignment explanation
Indices: 67926089--67926207 Score: 157
Period size: 25 Copynumber: 4.7 Consensus size: 25
67926079 ACTTATTCAA
* * *
67926089 AAATAATAAGGGCAAATTTAACCAG
1 AAATATTAAGAGCAAATTTAACCGG
67926114 AAATATTAAGAGCAAAATTTAACCGG
1 AAATATTAAGAGC-AAATTTAACCGG
* **
67926140 AACTATTAAGAGCAAATTTTTCCGG
1 AAATATTAAGAGCAAATTTAACCGG
67926165 AAATATTAAGAGCAAATTTAACCGG
1 AAATATTAAGAGCAAATTTAACCGG
* *
67926190 AATTATTAAGATCAAATT
1 AAATATTAAGAGCAAATT
67926208 ATCAAGCTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
25 59 0.72
26 23 0.28
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (25 bp):
AAATATTAAGAGCAAATTTAACCGG
Found at i:67930405 original size:56 final size:56
Alignment explanation
Indices: 67930339--67930475 Score: 238
Period size: 56 Copynumber: 2.4 Consensus size: 56
67930329 GACCATGGCA
* *
67930339 TCGATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTAATT
*
67930395 TCGATATATGTGTGGGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTAATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTAATT
*
67930451 TCGATTTATGTGTGCGAGTAAGACC
1 TCGATATATGTGTGCGAGTAAGACC
67930476 CTATCTGGGA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTAATT
Found at i:67937280 original size:27 final size:27
Alignment explanation
Indices: 67937250--67937486 Score: 194
Period size: 27 Copynumber: 8.8 Consensus size: 27
67937240 AGAATTATTG
**
67937250 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTTAATTTACAAAATTACCA
*
67937277 AAATACCCTCGAA--TAGCAAAATTACCA
1 AAATACCCT-TAATTTA-CAAAATTACCA
* ** *
67937304 AAATACCCCTAATTTGTAAAATTACCG
1 AAATACCCTTAATTTACAAAATTACCA
* ** * **
67937331 AAATACCCTTGACATATAAAATTACTG
1 AAATACCCTTAATTTACAAAATTACCA
* ** *
67937358 AAATACCCTTAACTTGTAAAATTACCG
1 AAATACCCTTAATTTACAAAATTACCA
*
67937385 AAATACCCTTAATTTATAAAATTACCA
1 AAATACCCTTAATTTACAAAATTACCA
* ** *
67937412 AAATACCCCTAATTTGGAAAATTA-AA
1 AAATACCCTTAATTTACAAAATTACCA
* *
67937438 GAAATACCCCTAATTTACAAAATTACAA
1 -AAATACCCTTAATTTACAAAATTACCA
67937466 AAATACCCTTAACTTT-CAAAA
1 AAATACCCTTAA-TTTACAAAA
67937487 AAATTATAGA
Statistics
Matches: 175, Mismatches: 28, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.03
27 164 0.94
28 6 0.03
ACGTcount: A:0.46, C:0.21, G:0.05, T:0.28
Consensus pattern (27 bp):
AAATACCCTTAATTTACAAAATTACCA
Found at i:67937309 original size:54 final size:52
Alignment explanation
Indices: 67937267--67937477 Score: 217
Period size: 54 Copynumber: 3.9 Consensus size: 52
67937257 CTTGGTTTAC
* * *
67937267 AAAATTACCAAAATACCCTCGAATAGCAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCGAAATACCCT-GAATA-TAAAATTACCAAAATACCCTTAATTTGT
** *
67937321 AAAATTACCGAAATACCCTTGACATATAAAATTACTGAAATACCCTTAACTTGT
1 AAAATTACCGAAATACCC-TGA-ATATAAAATTACCAAAATACCCTTAATTTGT
* * *
67937375 AAAATTACCGAAATACCCTTAATTTATAAAATTACCAAAATACCCCTAATTTGG
1 AAAATTACCGAAATACCCTGAA--TATAAAATTACCAAAATACCCTTAATTTGT
** * *
67937429 AAAATTAAAGAAATACCCCT-AATTTACAAAATTACAAAAATACCCTTAA
1 AAAATTACCGAAATA-CCCTGAA--TATAAAATTACCAAAATACCCTTAA
67937478 CTTTCAAAAA
Statistics
Matches: 135, Mismatches: 17, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 2 0.01
54 124 0.92
55 8 0.06
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.27
Consensus pattern (52 bp):
AAAATTACCGAAATACCCTGAATATAAAATTACCAAAATACCCTTAATTTGT
Found at i:67937433 original size:81 final size:81
Alignment explanation
Indices: 67937293--67937477 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
67937283 CCTCGAATAG
* * * * **
67937293 CAAAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCCTTGACATATAAAATTACTG
1 CAAAATTACCAAAATACCCTTAATTTATAAAATTACCAAAATACCCCTGACATATAAAATTAAAG
* *
67937358 AAATACCCTTAACTTG
66 AAATACCCCTAACTTA
* * *
67937374 TAAAATTACCGAAATACCCTTAATTTATAAAATTACCAAAATACCCCT-A-ATTTGGAAAATTAA
1 CAAAATTACCAAAATACCCTTAATTTATAAAATTACCAAAATACCCCTGACATAT--AAAATTAA
*
67937437 AGAAATACCCCTAATTTA
64 AGAAATACCCCTAACTTA
*
67937455 CAAAATTACAAAAATACCCTTAA
1 CAAAATTACCAAAATACCCTTAA
67937478 CTTTCAAAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 1 0.01
81 83 0.95
ACGTcount: A:0.46, C:0.21, G:0.05, T:0.28
Consensus pattern (81 bp):
CAAAATTACCAAAATACCCTTAATTTATAAAATTACCAAAATACCCCTGACATATAAAATTAAAG
AAATACCCCTAACTTA
Found at i:67937525 original size:27 final size:27
Alignment explanation
Indices: 67937486--67937538 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
67937476 AACTTTCAAA
67937486 AAAATTATAGAAATACCATTGGTTTGC
1 AAAATTATAGAAATACCATTGGTTTGC
* *
67937513 AAAATTATCGAAATACCTTTGGTTTG
1 AAAATTATAGAAATACCATTGGTTTG
67937539 TAGATTTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTGC
Found at i:67937845 original size:41 final size:41
Alignment explanation
Indices: 67937795--67937914 Score: 186
Period size: 41 Copynumber: 2.9 Consensus size: 41
67937785 AGGAGGAAGA
*
67937795 AATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
1 AATTAAGGATCGCATGGTTGCTTGATGACCGTGGATCCACC
* *
67937836 GATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACC
1 AATTAAGGATCGCATGGTTGCTTGATGACCGTGGATCCACC
* * *
67937877 AATTAAGGATCGCATGGTTACTTTATTACCGTGGATCC
1 AATTAAGGATCGCATGGTTGCTTGATGACCGTGGATCC
67937915 GCCGGTGGCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (41 bp):
AATTAAGGATCGCATGGTTGCTTGATGACCGTGGATCCACC
Found at i:67942184 original size:19 final size:20
Alignment explanation
Indices: 67942155--67942195 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
67942145 TGAAATCGAG
67942155 AGAAGAAACAAAGAAAAGAA
1 AGAAGAAACAAAGAAAAGAA
67942175 AGAA-AAACAAAGAAAAGAA
1 AGAAGAAACAAAGAAAAGAA
67942194 AG
1 AG
67942196 TGAACAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.76, C:0.05, G:0.20, T:0.00
Consensus pattern (20 bp):
AGAAGAAACAAAGAAAAGAA
Found at i:67944512 original size:10 final size:10
Alignment explanation
Indices: 67944499--67944534 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
67944489 AGCTCCCATC
67944499 AGCTCACTTG
1 AGCTCACTTG
* *
67944509 AGCTCAATTT
1 AGCTCACTTG
67944519 AGCTCACTTG
1 AGCTCACTTG
67944529 AGCTCA
1 AGCTCA
67944535 ATTCAGTCGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (10 bp):
AGCTCACTTG
Found at i:67944522 original size:20 final size:20
Alignment explanation
Indices: 67944499--67944537 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
67944489 AGCTCCCATC
67944499 AGCTCACTTGAGCTCAATTT
1 AGCTCACTTGAGCTCAATTT
67944519 AGCTCACTTGAGCTCAATT
1 AGCTCACTTGAGCTCAATT
67944538 CAGTCGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (20 bp):
AGCTCACTTGAGCTCAATTT
Found at i:67948885 original size:44 final size:44
Alignment explanation
Indices: 67948826--67948944 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 44
67948816 AAATGTGATA
* * * *
67948826 TTCGGGCCTC-GGCCTACCAAGCTTTAA-GCTGGTGA-ATAATAT
1 TTCGGGCTTCGGGCCTACCAAGCTATAATGCCGGTGAGATAAT-G
* *
67948868 TATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGATAATG
1 T-TCGGGCTTCGGGCCTACCAAGCTATAATGCCGGTGAGATAATG
* *
67948913 TT-GGGCTTCGGGCCTAGCAGGCTATAATGCCG
1 TTCGGGCTTCGGGCCTACCAAGCTATAATGCCG
67948945 ATGAAATGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
42 1 0.01
43 38 0.57
44 15 0.22
45 8 0.12
46 5 0.07
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (44 bp):
TTCGGGCTTCGGGCCTACCAAGCTATAATGCCGGTGAGATAATG
Done.