Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 227 of 770
Found at i:67948920 original size:43 final size:43
Alignment explanation
Indices: 67948863--67948991 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
67948853 GCTGGTGAAT
*
67948863 AATATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* * * *
67948906 GATAATGTTGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* ** * *
67948949 AATGATATCGGGCTTCAAGCCTAGCAGGC-AAAATACCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
67948991 A
1 A
67948992 TGAGTTCAGA
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 11 0.15
43 61 0.85
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:67949067 original size:40 final size:40
Alignment explanation
Indices: 67948881--67949072 Score: 134
Period size: 43 Copynumber: 4.6 Consensus size: 40
67948871 CGGGCTTCGG
* * ***
67948881 GCCTAGCAGGCTATAATGCCGGTGAGATAATGTTGGGCTTCGG
1 GCCTAGCAGGCTA-AATGCCGGTGATA-AAT-TCGGGCTTAAA
* *
67948924 GCCTAGCAGGCTATAATGCCGATGA-AATGATATCGGGCTTCAA
1 GCCTAGCAGGCTA-AATGCCGGTGATAA--AT-TCGGGCTTAAA
* * * * * *
67948967 GCCTAGCAGGCAAAATACCGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTG-ATAAATTCGGGCTTAAA
* *** *
67949008 GTCTAGCAGGCTTCGTGCCGGTGATAAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGATAAATTCGGGCTTAAA
*
67949048 ACCTAGCAGGCTAAATGCCGGTGAT
1 GCCTAGCAGGCTAAATGCCGGTGAT
67949073 TTGATAAAAG
Statistics
Matches: 116, Mismatches: 29, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
40 32 0.28
41 26 0.22
42 10 0.09
43 47 0.41
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (40 bp):
GCCTAGCAGGCTAAATGCCGGTGATAAATTCGGGCTTAAA
Found at i:67951318 original size:24 final size:24
Alignment explanation
Indices: 67951002--67951310 Score: 555
Period size: 24 Copynumber: 12.9 Consensus size: 24
67950992 GCAAAGACCA
*
67951002 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
67951026 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
67951050 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
67951074 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
67951098 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
67951122 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
67951146 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
67951170 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
67951194 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
67951218 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
67951242 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
67951266 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
67951290 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
67951311 TGCTATAGTC
Statistics
Matches: 279, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 279 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:67959373 original size:24 final size:24
Alignment explanation
Indices: 67959082--67959371 Score: 501
Period size: 24 Copynumber: 12.1 Consensus size: 24
67959072 GCAAAGACCA
67959082 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
67959106 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
67959130 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67959154 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
67959178 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
67959202 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
67959226 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
67959250 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
67959274 TATGGCACTATGTGTGCGA-TTAC
1 TATGGCACTATGTGTGCGATTTAC
67959297 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
67959321 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
67959345 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
67959369 TAT
1 TAT
67959372 AGTCACATTC
Statistics
Matches: 259, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
23 22 0.08
24 237 0.92
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:67962234 original size:39 final size:39
Alignment explanation
Indices: 67962180--67962342 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
67962170 TGTGAATGAA
67962180 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
67962219 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
67962258 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
67962297 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
67962337 TGTGCG
1 TGTGCG
67962343 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:67962358 original size:40 final size:39
Alignment explanation
Indices: 67962180--67962372 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
67962170 TGTGAATGAA
* *
67962180 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
67962219 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
67962258 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
67962297 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
67962337 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
67962373 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:67970216 original size:39 final size:39
Alignment explanation
Indices: 67970162--67970315 Score: 254
Period size: 39 Copynumber: 3.9 Consensus size: 39
67970152 TGTGAATGAA
67970162 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
67970201 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
67970240 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
67970279 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
67970316 GTTTGGGCTA
Statistics
Matches: 108, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 99 0.92
40 9 0.08
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:67975985 original size:27 final size:28
Alignment explanation
Indices: 67975955--67976023 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
67975945 ATAGTGAGTC
*
67975955 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
67975982 CGCACACTTAGTGCTGTATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
67976010 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67976024 CATTCTCATG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67980429 original size:39 final size:39
Alignment explanation
Indices: 67980384--67980584 Score: 204
Period size: 39 Copynumber: 4.9 Consensus size: 39
67980374 TCCGGGTTTA
* * *
67980384 AAGGTCCGCAGGCTATGTGCTGAAATTATATCTGGACTT
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGAACTT
*
67980423 GAGGTCCGCAGGCTATGTGCTGGAATTATATCCGAACTT
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGAACTT
*
67980462 AAGGTCCGCAGGCTATGTGCTGGAATTATGCTGGAATTATATCCGGACTT
1 AAGGTCCGCAGGCTA-----T-G-----TGCTGGAATTATATCCGAACTT
* * *
67980512 CAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTT
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGAACTT
* * *
67980551 AAGGTCCGCAGGCTACGTGCTGGAAATATGTCCG
1 AAGGTCCGCAGGCTATGTGCTGGAATTATATCCG
67980585 GGATAAATTC
Statistics
Matches: 138, Mismatches: 13, Indels: 22
0.80 0.08 0.13
Matches are distributed among these distances:
39 99 0.72
44 2 0.01
45 2 0.01
50 35 0.25
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
AAGGTCCGCAGGCTATGTGCTGGAATTATATCCGAACTT
Found at i:67980517 original size:50 final size:50
Alignment explanation
Indices: 67980440--67980540 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
67980430 GCAGGCTATG
67980440 TGCTGGAATTATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TGCTGGAATTATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
67980490 TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTA
1 TGCTGGAATTATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
67980540 T
1 T
67980541 AACCGGACTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (50 bp):
TGCTGGAATTATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:67980552 original size:89 final size:89
Alignment explanation
Indices: 67980401--67980580 Score: 297
Period size: 89 Copynumber: 2.0 Consensus size: 89
67980391 GCAGGCTATG
* * *
67980401 TGCTGAAATTATATCTGGACTTGAGGTCCGCAGGCTATGTGCTGGAATTATATCCGAACTTAAGG
1 TGCTGAAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATAACCGAACTTAAGG
* *
67980466 TCCGCAGGCTATGTGCTGGAATTA
66 TCCGCAGGCTACGTGCTGGAAATA
* *
67980490 TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGG
1 TGCTGAAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATAACCGAACTTAAGG
67980555 TCCGCAGGCTACGTGCTGGAAATA
66 TCCGCAGGCTACGTGCTGGAAATA
67980579 TG
1 TG
67980581 TCCGGGATAA
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (89 bp):
TGCTGAAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATAACCGAACTTAAGG
TCCGCAGGCTACGTGCTGGAAATA
Found at i:67987015 original size:27 final size:27
Alignment explanation
Indices: 67986997--67987066 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
67986987 ATAGTGAGTC
67986997 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
67987024 CGCACACTTAGTGCTGTATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
67987052 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67987067 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:67987060 original size:28 final size:27
Alignment explanation
Indices: 67986997--67987069 Score: 119
Period size: 28 Copynumber: 2.7 Consensus size: 27
67986987 ATAGTGAGTC
*
67986997 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTGTATAATCAACT
*
67987024 CGCACACTTAGTGCTGTATGATCAAACT
1 CGCACACTTAGTGCTGTATAATC-AACT
67987052 CGCACACTTAGTGCTGTA
1 CGCACACTTAGTGCTGTA
67987070 CAAATTTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 21 0.49
28 22 0.51
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTGTATAATCAACT
Found at i:67989334 original size:93 final size:93
Alignment explanation
Indices: 67989222--67989393 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67989212 GCCCATAAGT
* *
67989222 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67989287 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67989315 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67989380 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67989394 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67989389 original size:46 final size:46
Alignment explanation
Indices: 67989214--67989389 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67989204 TGTAACCCGC
* * *
67989214 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67989260 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67989310 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67989353 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67989390 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67994489 original size:39 final size:39
Alignment explanation
Indices: 67994371--67994553 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
67994361 TCGTTCAAAC
* * ** * **
67994371 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
67994411 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
67994451 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
67994490 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
67994529 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
67994554 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:68001918 original size:39 final size:39
Alignment explanation
Indices: 68001800--68001982 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
68001790 TCGTTCAAAC
* * ** * **
68001800 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
68001840 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
68001880 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
68001919 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
68001958 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
68001983 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:68005898 original size:43 final size:43
Alignment explanation
Indices: 68005808--68005926 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 43
68005798 AATATTATTG
* **
68005808 GGCTTCGGGCCTAGCAGGCTATAATGCC-AGTGAGATAATATTG
1 GGCTTCGGGCCTAGCAGGCTATAATGCCGA-TGAAATAATATCA
* *
68005851 GGCTTTGGGCCTAGCAGGCTATAATGCCGATGAAATGATATCA
1 GGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAATAATATCA
** * *
68005894 GGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 GGCTTCGGGCCTAGCAGGCTATAATGCCGATGAA
68005927 TGAGTTCAGA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 11 0.17
43 53 0.82
44 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
GGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAATAATATCA
Found at i:68005949 original size:41 final size:43
Alignment explanation
Indices: 68005859--68005953 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 43
68005849 TGGGCTTTGG
* * *
68005859 GCCTAGCAGGCTATAATGCCGATGAAATGATATCAGGCTTCAA
1 GCCTAGCAGGCGATAATGCCGATGAAATGATATCAGACTTAAA
*
68005902 GCCTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCAGACTTAAA
1 GCCTAGCAGGCGATAATGCCGATGAAATGA-TATCAGACTTAAA
*
68005943 GTCTAGCAGGC
1 GCCTAGCAGGC
68005954 TTCGTGCCGG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 24 0.52
42 10 0.22
43 12 0.26
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (43 bp):
GCCTAGCAGGCGATAATGCCGATGAAATGATATCAGACTTAAA
Found at i:68006002 original size:40 final size:40
Alignment explanation
Indices: 68005860--68006007 Score: 109
Period size: 40 Copynumber: 3.6 Consensus size: 40
68005850 GGGCTTTGGG
* * * *
68005860 CCTAGCAGGCTATAATGCCGATGA-AATGATATCAGGCTTCAAG
1 CCTAGCAGGCTA-AATGCCGGTGATAA--AT-TCAGACTTAAAA
* * * *
68005903 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTG-ATAAATTCAGACTTAAAA
* *** * **
68005944 TCTAGCAGGCTTCGTGCCGGTGATAAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATAAATTCAGACTTAAAA
68005984 CCTAGCAGGCTAAATGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
68006008 TTGATAAAAG
Statistics
Matches: 82, Mismatches: 21, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
40 32 0.39
41 27 0.33
42 10 0.12
43 12 0.15
44 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATAAATTCAGACTTAAAA
Found at i:68010593 original size:29 final size:28
Alignment explanation
Indices: 68010548--68010609 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
68010538 TGATTTTTAA
*
68010548 TGAAA-GTGCAAATTAGGAGTTAAATTG
1 TGAAATGTGCAAATTAGGAGTTAAAATG
*
68010575 TGAAATGTGTAAATTTAGGAGTTAAAATG
1 TGAAATGTGCAAA-TTAGGAGTTAAAATG
68010604 TGAAAT
1 TGAAAT
68010610 AAATGAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 5 0.16
28 6 0.19
29 20 0.65
ACGTcount: A:0.42, C:0.02, G:0.24, T:0.32
Consensus pattern (28 bp):
TGAAATGTGCAAATTAGGAGTTAAAATG
Found at i:68013961 original size:30 final size:30
Alignment explanation
Indices: 68013927--68013987 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68013917 TCCTTAACTC
68013927 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
68013957 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
68013987 A
1 A
68013988 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:68016006 original size:12 final size:12
Alignment explanation
Indices: 68015989--68016013 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68015979 GCTATTTTCC
68015989 AAGCTTTGGTCA
1 AAGCTTTGGTCA
68016001 AAGCTTTGGTCA
1 AAGCTTTGGTCA
68016013 A
1 A
68016014 CCTTGATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (12 bp):
AAGCTTTGGTCA
Found at i:68019603 original size:39 final size:40
Alignment explanation
Indices: 68019503--68019684 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
68019493 TCGAATGATG
* * *
68019503 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
68019543 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
68019583 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
68019621 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
68019662 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68019685 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:68019648 original size:78 final size:80
Alignment explanation
Indices: 68019503--68019684 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
68019493 TCGAATGATG
* * * *
68019503 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
68019568 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
68019583 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
68019645 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
68019662 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68019685 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:68026329 original size:39 final size:40
Alignment explanation
Indices: 68026229--68026410 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
68026219 TCGAATGATG
* * *
68026229 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
68026269 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
68026309 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
68026347 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
68026388 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68026411 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:68026374 original size:78 final size:80
Alignment explanation
Indices: 68026229--68026410 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
68026219 TCGAATGATG
* * * *
68026229 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
68026294 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
68026309 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
68026371 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
68026388 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68026411 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:68030064 original size:40 final size:39
Alignment explanation
Indices: 68030005--68030210 Score: 207
Period size: 40 Copynumber: 5.2 Consensus size: 39
68029995 CAATTGAATG
* * * *
68030005 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-ATT
* * * *
68030045 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-ATT
* * *
68030085 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TATT
* * **
68030125 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTATT
* * *
68030164 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-ATT
68030203 ATATCCGG
1 ATATCCGG
68030211 TTGTATCCGA
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
38 31 0.22
39 3 0.02
40 103 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTATT
Found at i:68030188 original size:78 final size:79
Alignment explanation
Indices: 68030005--68030210 Score: 245
Period size: 80 Copynumber: 2.6 Consensus size: 79
68029995 CAATTGAATG
* * ** * * *
68030005 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
*
68030070 ATTGTGCTAGTGACT
66 ATTGTGCAAGTGA-T
* * * *
68030085 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
*
68030150 TTTGTGCAAGTCG-T
66 ATTGTGCAAGT-GAT
* *
68030164 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
68030211 TTGTATCCGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 43 0.40
79 1 0.01
80 63 0.58
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAGTGAT
Found at i:68038182 original size:40 final size:40
Alignment explanation
Indices: 68038123--68038330 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
68038113 CAATTGAATG
* * *
68038123 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
68038163 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
68038203 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
68038243 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
68038283 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
68038323 ATATCCGG
1 ATATCCGG
68038331 TTGTAATCCG
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:68038261 original size:80 final size:80
Alignment explanation
Indices: 68038125--68038330 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
68038115 ATTGAATGAT
* * * * * *
68038125 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
68038190 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
68038205 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
68038270 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
68038285 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
68038331 TTGTAATCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:68042251 original size:29 final size:27
Alignment explanation
Indices: 68042217--68042319 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
68042207 TACTCAATCA
*
68042217 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
68042246 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
68042275 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
68042304 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68042320 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:68052658 original size:15 final size:15
Alignment explanation
Indices: 68052640--68052670 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
68052630 TTAATGTAAG
68052640 TTTAGCACGTGATAA
1 TTTAGCACGTGATAA
*
68052655 TTTAGCATGTGATAA
1 TTTAGCACGTGATAA
68052670 T
1 T
68052671 GATAACTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (15 bp):
TTTAGCACGTGATAA
Found at i:68055167 original size:23 final size:22
Alignment explanation
Indices: 68055141--68055190 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
68055131 GTGTCCTGTT
* *
68055141 ATATGCCTCTCTGGAGCTTCCCG
1 ATATG-CTCCCTGGAACTTCCCG
*
68055164 ATATTGCTCCCTTGAACTTCCCG
1 ATA-TGCTCCCTGGAACTTCCCG
68055187 ATAT
1 ATAT
68055191 ATGGCTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 20 0.87
24 2 0.09
ACGTcount: A:0.18, C:0.32, G:0.16, T:0.34
Consensus pattern (22 bp):
ATATGCTCCCTGGAACTTCCCG
Found at i:68072618 original size:27 final size:27
Alignment explanation
Indices: 68072560--68072866 Score: 330
Period size: 27 Copynumber: 11.4 Consensus size: 27
68072550 CCCCAAAATA
* * *
68072560 GGTAAAATGATCGTAA-ACCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
68072586 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
68072613 GATAAAATGATCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
68072640 GGTAAAATGACTGTAATGCCCC-GATAG
1 GGTAAAATGACCGTAATGCCCCTG-TAG
* * ** *
68072667 GGTAAAATGATCGTACTGCCTTTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
68072694 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
** *
68072721 GGTAAAATGACTATAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
68072748 GGTAAAATGATCATAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* ****
68072775 GGTAAAATGACAGTAATGTTTATGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
68072802 GATAAAATGACCATAACGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
68072829 GGTAAGATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
68072856 GGTAAAATGAC
1 GGTAAAATGAC
68072867 GATTATGCCT
Statistics
Matches: 227, Mismatches: 51, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
26 15 0.07
27 211 0.93
28 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:68073046 original size:27 final size:27
Alignment explanation
Indices: 68073016--68073077 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
68073006 GCACTAGTGA
* * * *
68073016 CTATGTCACATTCACTGTTATTGGTGG
1 CTATGCCACAATCACTGATACTGGTGG
*
68073043 CTATGCCACAATGACTGATACTGGTGG
1 CTATGCCACAATCACTGATACTGGTGG
*
68073070 CTTTGCCA
1 CTATGCCA
68073078 TACTTACTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
CTATGCCACAATCACTGATACTGGTGG
Found at i:68078946 original size:47 final size:47
Alignment explanation
Indices: 68078877--68078970 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
68078867 GAAGAAAGAA
68078877 GATGGAGAATAAGGAAATGATAGCTAGGCTTTTAGGCATTATTTTAT
1 GATGGAGAATAAGGAAATGATAGCTAGGCTTTTAGGCATTATTTTAT
68078924 GATGGAGAATAAGGAAATGATAGCTAGGCTTTTAGGCATTATTTTAT
1 GATGGAGAATAAGGAAATGATAGCTAGGCTTTTAGGCATTATTTTAT
68078971 CACCAAATCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (47 bp):
GATGGAGAATAAGGAAATGATAGCTAGGCTTTTAGGCATTATTTTAT
Found at i:68081673 original size:27 final size:28
Alignment explanation
Indices: 68081617--68081686 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
68081607 AAATTTGTAC
68081617 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
68081645 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
68081672 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68081687 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:68089552 original size:27 final size:28
Alignment explanation
Indices: 68089496--68089565 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
68089486 AAATTTGTAC
68089496 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
68089524 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
68089551 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68089566 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:68092543 original size:2 final size:2
Alignment explanation
Indices: 68092536--68092566 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
68092526 TTTAAGTGCT
68092536 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68092567 CGAATAGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68093118 original size:21 final size:21
Alignment explanation
Indices: 68093092--68093135 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
68093082 TTAGATAGCT
68093092 AAATATTAAAGAAAGAAAACA
1 AAATATTAAAGAAAGAAAACA
68093113 AAATATTAAAGAAAGAAAACA
1 AAATATTAAAGAAAGAAAACA
68093134 AA
1 AA
68093136 GAATAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.73, C:0.05, G:0.09, T:0.14
Consensus pattern (21 bp):
AAATATTAAAGAAAGAAAACA
Found at i:68094058 original size:56 final size:56
Alignment explanation
Indices: 68093972--68094105 Score: 232
Period size: 56 Copynumber: 2.4 Consensus size: 56
68093962 CATGGCTTCA
**
68093972 ATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
*
68094028 ATATATGTGTGTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
*
68094084 ATATATGTGTACGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
68094106 CTGTCTGGGA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTCG
Found at i:68096649 original size:29 final size:29
Alignment explanation
Indices: 68096616--68096689 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
68096606 CCTTCGAGCT
68096616 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
68096645 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68096674 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68096690 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68096650 original size:58 final size:58
Alignment explanation
Indices: 68096557--68096689 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
68096547 ATACTCGATT
* * * * *
68096557 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
68096615 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
68096673 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
68096690 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:68104532 original size:29 final size:29
Alignment explanation
Indices: 68104499--68104572 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
68104489 CCTTCGAGCT
68104499 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
68104528 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68104557 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68104573 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68104533 original size:58 final size:58
Alignment explanation
Indices: 68104440--68104572 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
68104430 ATACTCGATT
* * * * *
68104440 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
68104498 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
68104556 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
68104573 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:68107028 original size:32 final size:32
Alignment explanation
Indices: 68106992--68107070 Score: 131
Period size: 32 Copynumber: 2.5 Consensus size: 32
68106982 ACAGTCTCAA
* *
68106992 TTGGGCCTAGCCCATCTCAGAATCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
*
68107024 TTGGGCCTAGCCCATATCAGAGCCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
68107056 TTGGGCCTAGCCCAT
1 TTGGGCCTAGCCCAT
68107071 TTCAATATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATCAG
Found at i:68107042 original size:26 final size:26
Alignment explanation
Indices: 68107013--68107080 Score: 73
Period size: 32 Copynumber: 2.4 Consensus size: 26
68107003 CCATCTCAGA
68107013 ATCAATATCAGTTGGGCCTAGCCCAT
1 ATCAATATCAGTTGGGCCTAGCCCAT
68107039 ATCAGAGCCAATATCAGTTGGGCCTAGCCCAT
1 AT------CAATATCAGTTGGGCCTAGCCCAT
*
68107071 TTCAATATCA
1 ATCAATATCA
68107081 AACCCATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
26 10 0.29
32 25 0.71
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
ATCAATATCAGTTGGGCCTAGCCCAT
Found at i:68121463 original size:11 final size:11
Alignment explanation
Indices: 68121447--68121475 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
68121437 CACTTCAAAT
68121447 TTTTTTTCGAA
1 TTTTTTTCGAA
68121458 TTTTTTTCGAA
1 TTTTTTTCGAA
68121469 TTTTTTT
1 TTTTTTT
68121476 AAACTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (11 bp):
TTTTTTTCGAA
Found at i:68124783 original size:43 final size:42
Alignment explanation
Indices: 68124694--68124790 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 42
68124684 TTATAATACG
* * * * *
68124694 TGTAAGACCATATCTGGGATATGGCATCGATATGATACTTCG
1 TGTAAGACCATAGCTAGGATATGGCATCGATATAAGACTTCA
*
68124736 TGTAAGACCATAGCTAGGCTATTGGCATCGATATAAGA-TTACA
1 TGTAAGACCATAGCTAGGATA-TGGCATCGATATAAGACTT-CA
68124779 TGTAAGACCATA
1 TGTAAGACCATA
68124791 TTTGGGATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 20 0.43
43 27 0.57
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATAGCTAGGATATGGCATCGATATAAGACTTCA
Found at i:68130485 original size:32 final size:32
Alignment explanation
Indices: 68130449--68130527 Score: 131
Period size: 32 Copynumber: 2.5 Consensus size: 32
68130439 ACAGTCTCAA
* *
68130449 TTGGGCCTAGCCCATCTCAGAATCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
68130481 TTGGGCCTAGCCCATATCAGAACCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
*
68130513 TTGGGCCTTGCCCAT
1 TTGGGCCTAGCCCAT
68130528 TTCAATATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATCAG
Found at i:68130499 original size:26 final size:26
Alignment explanation
Indices: 68130470--68130537 Score: 64
Period size: 32 Copynumber: 2.4 Consensus size: 26
68130460 CCATCTCAGA
68130470 ATCAATATCAGTTGGGCCTAGCCCAT
1 ATCAATATCAGTTGGGCCTAGCCCAT
*
68130496 ATCAGAACCAATATCAGTTGGGCCTTGCCCAT
1 AT------CAATATCAGTTGGGCCTAGCCCAT
*
68130528 TTCAATATCA
1 ATCAATATCA
68130538 AACCCATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
26 10 0.29
32 24 0.71
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
ATCAATATCAGTTGGGCCTAGCCCAT
Found at i:68134494 original size:18 final size:20
Alignment explanation
Indices: 68134453--68134494 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
68134443 TTAAAGCCTT
*
68134453 TGAAAACACTTGTTAATTTT
1 TGAAAACACTTGTTAATTTC
*
68134473 TGAAAACA-TT-TTCATTTC
1 TGAAAACACTTGTTAATTTC
68134491 TGAA
1 TGAA
68134495 GCTTTGTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 10 0.50
19 2 0.10
20 8 0.40
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.43
Consensus pattern (20 bp):
TGAAAACACTTGTTAATTTC
Found at i:68135095 original size:25 final size:26
Alignment explanation
Indices: 68135061--68135118 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
68135051 AGCATGGCTG
*
68135061 CCAGAACAGATATTGT-G-AGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
68135085 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
68135112 CCAGAAC
1 CCAGAAC
68135119 GTGTCCTCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 5 0.17
25 11 0.37
26 3 0.10
27 11 0.37
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:68137531 original size:16 final size:16
Alignment explanation
Indices: 68137510--68137549 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
68137500 AATATAGGGG
*
68137510 CAAAATGTAATTTTGC
1 CAAAATATAATTTTGC
68137526 CAAAATATAATTTTGC
1 CAAAATATAATTTTGC
68137542 CAAAATAT
1 CAAAATAT
68137550 GTAAATTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (16 bp):
CAAAATATAATTTTGC
Found at i:68137904 original size:43 final size:42
Alignment explanation
Indices: 68137828--68137924 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
68137818 TTATAATACG
* * * *
68137828 TGTAAGACCATATCTGGGATATGGCATCGATATGATACTT-CA
1 TGTAAGACCATAGCTAGGATATGGCACCGATATGAGA-TTACA
*
68137870 TGTAAGACCATAGCTAGGCTATTGGCACCGATATGAGATTACA
1 TGTAAGACCATAGCTAGGATA-TGGCACCGATATGAGATTACA
68137913 TGTAAGACCATA
1 TGTAAGACCATA
68137925 TTTGGTATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
42 20 0.42
43 28 0.58
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGCTAGGATATGGCACCGATATGAGATTACA
Found at i:68140268 original size:39 final size:40
Alignment explanation
Indices: 68140063--68140327 Score: 331
Period size: 40 Copynumber: 6.7 Consensus size: 40
68140053 GCTACTCGTT
* *
68140063 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
68140103 CAAATGCCTTCGAGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
68140143 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
68140183 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** *
68140223 CCAATGCCTTCGGG-CTTAGCCTAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
68140262 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
68140303 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
68140328 CATCATTCGA
Statistics
Matches: 200, Mismatches: 20, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.16
40 154 0.77
41 13 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:68140318 original size:119 final size:121
Alignment explanation
Indices: 68140063--68140327 Score: 351
Period size: 119 Copynumber: 2.2 Consensus size: 121
68140053 GCTACTCGTT
* *
68140063 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCA
* * * * *
68140127 GATTTAGTGACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTCACTAGCA
* * * * *
68140183 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCG-GGCTTAGCCTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCA
**
68140246 GAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTCAC-TAGCA
68140303 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68140328 CATCATTCGA
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
118 3 0.02
119 68 0.54
120 54 0.43
121 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCA
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTCACTAGCA
Found at i:68145290 original size:17 final size:17
Alignment explanation
Indices: 68145268--68145310 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
68145258 AGGGCCATGT
*
68145268 GGGCCCAATGGGCCTAC
1 GGGCCCAATGAGCCTAC
68145285 GGGCCCAATGAGCCTAC
1 GGGCCCAATGAGCCTAC
68145302 GGGCCCAAT
1 GGGCCCAAT
68145311 TGGATAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.21, C:0.35, G:0.33, T:0.12
Consensus pattern (17 bp):
GGGCCCAATGAGCCTAC
Found at i:68145522 original size:27 final size:27
Alignment explanation
Indices: 68145490--68145633 Score: 207
Period size: 27 Copynumber: 5.3 Consensus size: 27
68145480 CAAATTATAA
68145490 AAAATACCCCTGGTTTGTAAAATTACC
1 AAAATACCCCTGGTTTGTAAAATTACC
* * **
68145517 AGAATACCCTTGGTTTACAAAATTACC
1 AAAATACCCCTGGTTTGTAAAATTACC
*
68145544 AAAATACCCTTGGTTTGTAAAATTACC
1 AAAATACCCCTGGTTTGTAAAATTACC
* *
68145571 AAAATATCCCTAGTTTGTAAAATTACC
1 AAAATACCCCTGGTTTGTAAAATTACC
* *
68145598 AAAATACCCCTGATTTGTAAAATTACT
1 AAAATACCCCTGGTTTGTAAAATTACC
68145625 AAAATACCC
1 AAAATACCC
68145634 TCGACCTGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATACCCCTGGTTTGTAAAATTACC
Found at i:68145548 original size:54 final size:54
Alignment explanation
Indices: 68145471--68145634 Score: 213
Period size: 54 Copynumber: 3.0 Consensus size: 54
68145461 TTAGAATACT
* ** *
68145471 TTAGTTTACCAAATTATAAAAAATACCCCTGGTTTGTAAAATTACCAGAATACCC
1 TTAGTTTACAAAATTA-CCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* *
68145526 TTGGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATATCCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCC
** * *
68145581 -TAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
68145634 T
1 T
68145635 CGACCTGTAA
Statistics
Matches: 95, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.03
54 75 0.79
55 17 0.18
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:68145604 original size:81 final size:80
Alignment explanation
Indices: 68145490--68145694 Score: 232
Period size: 81 Copynumber: 2.5 Consensus size: 80
68145480 CAAATTATAA
* * * *
68145490 AAAATACCCCTGGTTTGTAAAATTACCAGAATACCCTTGGTTTACAAAATTACCAAAATACCCTT
1 AAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCTC
***
68145555 GGTTTGTAAAATTACC
65 GACCTGTAAAATTACC
* ** *
68145571 AAAATATCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTC
1 AAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCTC
*
68145636 GACCTGTAAAATTACT
65 GACCTGTAAAATTACC
* * * *
68145652 GAAATACCCTCGACTTGT-AAATTACCAAAGTACCCTTGATTTA
1 AAAATACCCTAG-TTTGTAAAATTACCAAAATACCCTTGATTTA
68145695 TAGAATTATC
Statistics
Matches: 104, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
80 27 0.26
81 77 0.74
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (80 bp):
AAAATACCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCG
ACCTGTAAAATTACC
Found at i:68145643 original size:27 final size:27
Alignment explanation
Indices: 68145490--68145741 Score: 206
Period size: 27 Copynumber: 9.4 Consensus size: 27
68145480 CAAATTATAA
*
68145490 AAAATACCC-CTGGTTTGTAAAATTACC
1 AAAATACCCTC-GATTTGTAAAATTACC
* * * **
68145517 AGAATACCCTTGGTTTACAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTACC
* *
68145544 AAAATACCCTTGGTTTGTAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTACC
*
68145571 AAAATATCCCTAG-TTTGTAAAATTACC
1 AAAATA-CCCTCGATTTGTAAAATTACC
*
68145598 AAAATACCC-CTGATTTGTAAAATTACT
1 AAAATACCCTC-GATTTGTAAAATTACC
** *
68145625 AAAATACCCTCGACCTGTAAAATTACT
1 AAAATACCCTCGATTTGTAAAATTACC
* *
68145652 GAAATACCCTCGACTTGT-AAATTACC
1 AAAATACCCTCGATTTGTAAAATTACC
* * * * *
68145678 AAAGTACCCTTGATTTATAGAATTATC
1 AAAATACCCTCGATTTGTAAAATTACC
**** * *
68145705 GTTTTACCTTCGATTTGCAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTACC
*
68145732 GAAATACCCT
1 AAAATACCCT
68145742 TGTAGGGTAG
Statistics
Matches: 183, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 24 0.13
27 153 0.84
28 6 0.03
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATACCCTCGATTTGTAAAATTACC
Found at i:68145758 original size:27 final size:27
Alignment explanation
Indices: 68145725--68146056 Score: 391
Period size: 27 Copynumber: 12.3 Consensus size: 27
68145715 CGATTTGCAA
68145725 AATTACCGAAATACCCTTGTAGGGTAGG
1 AATTACCGAAATACCCTTGTAGGGTA-G
*
68145753 AA-TACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
68145779 AAATACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
68145806 AATTATTGAAATAACCC-TGTAGGGTAG
1 AATTACCGAAAT-ACCCTTGTAGGGTAG
* *
68145833 AATTACTGAGATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
68145860 AAATACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
68145887 AAATACCGAAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
** *
68145914 AATTACTAAAATACCCCATGTAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
*
68145942 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
68145969 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
68145996 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
68146023 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
68146050 AATTACC
1 AATTACC
68146057 ATTTTACCCC
Statistics
Matches: 266, Mismatches: 32, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
26 10 0.04
27 226 0.85
28 28 0.11
29 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:68146367 original size:27 final size:27
Alignment explanation
Indices: 68146337--68146389 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
68146327 AAATATCTCC
**
68146337 TCTGGTGGTTCTACCACAATATCTGTA
1 TCTGGTGACTCTACCACAATATCTGTA
**
68146364 TCTGGTGACTCTGTCACAATATCTGT
1 TCTGGTGACTCTACCACAATATCTGT
68146390 TGACCGATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
TCTGGTGACTCTACCACAATATCTGTA
Found at i:68146525 original size:78 final size:78
Alignment explanation
Indices: 68146396--68146559 Score: 224
Period size: 78 Copynumber: 2.1 Consensus size: 78
68146386 CTGTTGACCG
* * * * * *
68146396 ATCGATGGCTGAGTGCTGGTCATGTTACCGAAGGTTGTATGCCGTTATTGTGGGCTTTGTG-TCG
1 ATCGATGGATGAGTGCTGATCATGTTACCAAAGGCTGTATGCCATTATTGTGGGCTTCGTGCT-G
*
68146460 ATTATAGACCCGTT
65 ATTATAGACCCATT
*
68146474 ATCGATGGATGAGTG-TCGATCATGTTACCAAAGGCTGTGTGCCATTATTGTGGGCTTCGTGCTG
1 ATCGATGGATGAGTGCT-GATCATGTTACCAAAGGCTGTATGCCATTATTGTGGGCTTCGTGCTG
68146538 ATTATAGACCCATT
65 ATTATAGACCCATT
68146552 ATCGATGG
1 ATCGATGG
68146560 CTTTGTGCCA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 74 0.97
79 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (78 bp):
ATCGATGGATGAGTGCTGATCATGTTACCAAAGGCTGTATGCCATTATTGTGGGCTTCGTGCTGA
TTATAGACCCATT
Found at i:68146628 original size:27 final size:26
Alignment explanation
Indices: 68146598--68146663 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
68146588 TTTGCCATAT
*
68146598 TATCTGATTCTGGTGGCTCTACCACAA
1 TATCTG-TTCTGGTGACTCTACCACAA
**
68146625 TATCTGTATCTGGTGACTCTGTCACAA
1 TATCTGT-TCTGGTGACTCTACCACAA
68146652 TATCTGTTCTGG
1 TATCTGTTCTGG
68146664 CAGCCATGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
TATCTGTTCTGGTGACTCTACCACAA
Found at i:68146837 original size:25 final size:25
Alignment explanation
Indices: 68146794--68146847 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
68146784 CTGATTTTGT
**
68146794 TTCTGTTACCTGATACTGATACTGA
1 TTCTGTTACCAAATACTGATACTGA
* *
68146819 TTCTGTTACCAAATTCTGATTCTGA
1 TTCTGTTACCAAATACTGATACTGA
68146844 TTCT
1 TTCT
68146848 AATTCTGATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.44
Consensus pattern (25 bp):
TTCTGTTACCAAATACTGATACTGA
Found at i:68146842 original size:6 final size:6
Alignment explanation
Indices: 68146831--68146876 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
68146821 CTGTTACCAA
* * *
68146831 ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG ATTCTC ATTTTG ATTC
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTC
68146877 CAGTTCTGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:68146853 original size:18 final size:18
Alignment explanation
Indices: 68146830--68146876 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
68146820 TCTGTTACCA
68146830 AATTCTGATTCTGATTCT
1 AATTCTGATTCTGATTCT
68146848 AATTCTGATTCTGATTCT
1 AATTCTGATTCTGATTCT
* *
68146866 CATTTTGATTC
1 AATTCTGATTC
68146877 CAGTTCTGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (18 bp):
AATTCTGATTCTGATTCT
Found at i:68146886 original size:12 final size:12
Alignment explanation
Indices: 68146831--68146886 Score: 60
Period size: 12 Copynumber: 4.7 Consensus size: 12
68146821 CTGTTACCAA
*
68146831 ATTCTGATTCTG
1 ATTCTGATTCTC
* *
68146843 ATTCTAATTCTG
1 ATTCTGATTCTC
68146855 ATTCTGATTCTC
1 ATTCTGATTCTC
*
68146867 ATTTTGATTC-C
1 ATTCTGATTCTC
68146878 AGTTCTGAT
1 A-TTCTGAT
68146887 ATTCTGTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
11 2 0.05
12 36 0.95
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (12 bp):
ATTCTGATTCTC
Found at i:68148881 original size:27 final size:27
Alignment explanation
Indices: 68148851--68149002 Score: 205
Period size: 27 Copynumber: 5.6 Consensus size: 27
68148841 GTAGTTTACC
68148851 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
68148878 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
68148905 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68148932 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
68148959 AAATTACCCAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
68148986 AAATTACTAAAACACCC
1 AAATTACCAAAATACCC
68149003 TCGACCTACA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:68148916 original size:54 final size:54
Alignment explanation
Indices: 68148844--68149056 Score: 223
Period size: 54 Copynumber: 3.9 Consensus size: 54
68148834 GAATACTGTA
* *
68148844 GTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTG
* * *
68148898 GTTTACAAAATTACCAAAATA-CCCTTAGTTTGTAAAATTACCAAAATACCCCTA
1 GTTTACAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTG
** * * * * *
68148952 GTTTGTAAAATTACCCAAATACCCCTGATTTGTGAAATTACTAAAACACCCTCG
1 GTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTG
*** * * * *
68149006 ACCTACAAAATTACTAAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCC
1 GTTTACAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCC
68149057 CCGATTTATA
Statistics
Matches: 128, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
53 7 0.05
54 116 0.91
55 5 0.04
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTG
Found at i:68149016 original size:81 final size:81
Alignment explanation
Indices: 68148851--68149064 Score: 209
Period size: 81 Copynumber: 2.6 Consensus size: 81
68148841 GTAGTTTACC
* * * *
68148851 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCCAAATACCCCTGATTTACAAAATTACCAAA
* * ** **
68148916 ATACCCTTAGTTTGTA
66 ACACCCTGAGCCTACA
*** *
68148932 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCCAAATACCCCTGATTTGTGAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCCAAATACCCCTGATTTACAAAATTACCAAA
68148997 ACACCCTCGA-CCTACA
66 ACACCCT-GAGCCTACA
* * * * *
68149013 AAATTACTAAAATA-CCTTCGACTTGTAAAATTA-CCAAAGTACCCCCGATTTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCCAAA-TACCCCTGATTTA
68149065 TAGAATTATC
Statistics
Matches: 110, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 9 0.08
81 100 0.91
82 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCCAAATACCCCTGATTTACAAAATTACCAAA
ACACCCTGAGCCTACA
Found at i:68149110 original size:27 final size:27
Alignment explanation
Indices: 68148851--68149111 Score: 188
Period size: 27 Copynumber: 9.7 Consensus size: 27
68148841 GTAGTTTACC
* *
68148851 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
68148878 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
68148905 AAATTACCAAAATACCCT-TAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* *
68148932 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
68148959 AAATTACCCAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTATA
* * ** *
68148986 AAATTACTAAAACACCCTCGACCTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * * *
68149013 AAATTACTAAAATACCTTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
68149040 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * **** *
68149067 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
68149094 AAATTACCAAAATACCCT
1 AAATTACCAAAATACCCT
68149112 TGTAGGGTAG
Statistics
Matches: 186, Mismatches: 43, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
27 184 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:68149128 original size:27 final size:27
Alignment explanation
Indices: 68149098--68149419 Score: 330
Period size: 27 Copynumber: 12.0 Consensus size: 27
68149088 TTTACAAAAT
*
68149098 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
68149125 TACCGAAATATCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
68149152 TACCGAAATACCCTTATAGGATAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * * *
68149179 TATCGAAATACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
68149206 TATCGAAATACCCTTATA-GGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
68149232 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
68149259 TACCGAAATACCCCT-CAGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*** * * *
68149284 TTAGTAAAATA-TCATGTAGGGTAGAAT
1 -TACCGAAATACCCTTGTAGGGTAGAAA
*
68149311 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
68149338 TACCCAAAATACCCCTGTAGGGTAGAAT
1 TA-CCGAAATACCCTTGTAGGGTAGAAA
** * *
68149366 TACTAAAATACCCTTGTAAGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
68149393 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
68149419 T
1 T
68149420 TACCATTTTA
Statistics
Matches: 248, Mismatches: 41, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
25 5 0.02
26 53 0.21
27 165 0.67
28 25 0.10
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:68149261 original size:107 final size:106
Alignment explanation
Indices: 68149095--68149424 Score: 378
Period size: 107 Copynumber: 3.1 Consensus size: 106
68149085 CGATTTACAA
*
68149095 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATATCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
68149160 TACCCTTATAGGATAGAATTATCGAAATACCCCTGTAAGGTAG
66 TACCCTT-TAGG-TAGAATTATCGAAATACCCATGTAAGGTAG
* * *
68149203 AATTATCGAAATACCCTTATA-GGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
* * * * * *
68149267 TACCCCTCAGGGTAAAATTAGT-AAAATA-TCATGTAGGGTAG
66 TACCCTTTA-GGTAGAATTA-TCGAAATACCCATGTAAGGTAG
* * * **
68149308 AATTACCAAAATACCCTTGTAGGGTAGAAATACCCAAAATACCCCTGTAGGGTAGAATTACTAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAAATA-CCGAAATACCCTTGTAGGGTAGAAATACCGAA
* * * ** *
68149373 ATACCCTTGTAAGGTAGAATTACCGAGATACCCTTGTGGGGTAA
65 ATACCCTT-T-AGGTAGAATTATCGAAATACCCATGTAAGGTAG
68149417 AATTACCA
1 AATTACCA
68149425 TTTTACCCCT
Statistics
Matches: 185, Mismatches: 29, Indels: 15
0.81 0.13 0.07
Matches are distributed among these distances:
105 28 0.15
106 23 0.12
107 85 0.46
108 31 0.17
109 18 0.10
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (106 bp):
AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCTTTAGGTAGAATTATCGAAATACCCATGTAAGGTAG
Found at i:68149439 original size:134 final size:131
Alignment explanation
Indices: 68149095--68149424 Score: 351
Period size: 134 Copynumber: 2.5 Consensus size: 131
68149085 CGATTTACAA
*
68149095 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATATCCTTGTAGGGTAGAAA-TACCGAA
1 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTA-AAATTACC-AA
* * * * * * *
68149159 ATACCCTTATAGGATAGAATTATCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTATA
64 ATACCC--ATAGGGTAGAATTACCAAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATA
68149224 GGTAG
127 GGTAG
* * * * **
68149229 AAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCT-CAGGGTAAAATTAGTAAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAAAATTA-CCAAA
* * * *
68149293 TA-TCATGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCCAAAATACCCCTGTA
65 TACCCA--TAGGGTAGAATTACCAAAATACCCCTGTAAGGTAGAAATA-CCAAAATACCCCTATA
68149357 GGGTAG
127 -GGTAG
* * * * *
68149363 AATTACTAAAATACCCTTGTAAGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAAAATTACCA
68149425 TTTTACCCCT
Statistics
Matches: 160, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
130 1 0.01
132 38 0.24
133 25 0.16
134 85 0.53
135 11 0.07
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (131 bp):
AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAAAATTACCAAAT
ACCCATAGGGTAGAATTACCAAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTATAGGTA
G
Found at i:68149688 original size:28 final size:28
Alignment explanation
Indices: 68149648--68149729 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
68149638 GGAGGAAGCG
68149648 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
68149676 TTCTAGTGGCTATGCCACAAATATCTGC
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
68149704 TT-TGGTGGTTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
68149730 ATATGGTGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
26 8 0.17
27 12 0.25
28 28 0.58
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:68149935 original size:78 final size:78
Alignment explanation
Indices: 68149763--68149928 Score: 305
Period size: 78 Copynumber: 2.1 Consensus size: 78
68149753 CTGTTGACCG
* *
68149763 ATCGATGGCTGAGTGCCGGTCATGTTACAGAAGGCTGTGTGCCGTTATTGTGGGCTTCATGTCGA
1 ATCGATGGCTGAGTGCCGATCATGTTACAGAAGGCTGTGTGCCGTTATTGTGGGCTTCATGCCGA
68149828 TTATAGACCCGTT
66 TTATAGACCCGTT
*
68149841 ATCGATGGCTGAGTGCCGATCATGTTACTGAAGGCTGTGTGCCGTTATTGTGGGCTTCATGCCGA
1 ATCGATGGCTGAGTGCCGATCATGTTACAGAAGGCTGTGTGCCGTTATTGTGGGCTTCATGCCGA
68149906 TTATAGACCCGTT
66 TTATAGACCCGTT
68149919 ATCGATGGCT
1 ATCGATGGCT
68149929 TTGTGCCACG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 85 1.00
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (78 bp):
ATCGATGGCTGAGTGCCGATCATGTTACAGAAGGCTGTGTGCCGTTATTGTGGGCTTCATGCCGA
TTATAGACCCGTT
Found at i:68149980 original size:27 final size:27
Alignment explanation
Indices: 68149950--68150030 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
68149940 ATTTTGTTAA
* *
68149950 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
68149977 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* * *
68150004 GTGACTCTGTCACTATATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
68150030 G
1 G
68150031 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.10
27 42 0.88
28 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:68150205 original size:31 final size:31
Alignment explanation
Indices: 68150170--68150267 Score: 110
Period size: 31 Copynumber: 3.2 Consensus size: 31
68150160 ATTCTGTTAC
*
68150170 CTGATACTGATTCTAATTCTGTTACCTATTT
1 CTGATACTGATTCTGATTCTGTTACCTATTT
** * *
68150201 CTGATTTTGATTCTGATTCTGATT--CTGTTAC
1 CTGATACTGATTCTGATTCTG-TTACCTATT-T
*
68150232 CTGATACTGATTCTGATTCTGTTACCTAATT
1 CTGATACTGATTCTGATTCTGTTACCTATTT
68150263 CTGAT
1 CTGAT
68150268 TCTCATTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
30 6 0.11
31 42 0.79
32 5 0.09
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (31 bp):
CTGATACTGATTCTGATTCTGTTACCTATTT
Found at i:68150217 original size:6 final size:6
Alignment explanation
Indices: 68150199--68150270 Score: 67
Period size: 6 Copynumber: 11.7 Consensus size: 6
68150189 TGTTACCTAT
* *
68150199 TTCTGA TTTTGA TTCTGA TTCTGA TTCTG- TTACCTGA TACTGA TTCTGA
1 TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA TT--CTGA TTCTGA TTCTGA
*
68150248 TTCTG- TTACCTAA TTCTGA TTCT
1 TTCTGA TT--CTGA TTCTGA TTCT
68150271 CATTTTGACT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
5 4 0.07
6 42 0.78
7 5 0.09
8 3 0.06
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
TTCTGA
Found at i:68150217 original size:37 final size:37
Alignment explanation
Indices: 68150170--68150265 Score: 115
Period size: 37 Copynumber: 2.6 Consensus size: 37
68150160 ATTCTGTTAC
* *
68150170 CTGATACTGATTCTAATTCTGTTACCT-ATTTCTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTGA-TACTGATT
* *
68150207 TTGATTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTGATACTGATT
68150244 CTGATTCTG-TTACCTAATTCTG
1 CTGATTCTGATT--CTAATTCTG
68150266 ATTCTCATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
36 2 0.04
37 39 0.78
38 9 0.18
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTGTTACCTGATACTGATT
Found at i:68150236 original size:25 final size:25
Alignment explanation
Indices: 68150208--68150270 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
68150198 TTTCTGATTT
68150208 TGATTCTGATTCTGATTCTGTTACC
1 TGATTCTGATTCTGATTCTGTTACC
*
68150233 TGATACTGATTCTGATTCTGTTACC
1 TGATTCTGATTCTGATTCTGTTACC
*
68150258 TAATTCTGATTCT
1 TGATTCTGATTCT
68150271 CATTTTGACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
TGATTCTGATTCTGATTCTGTTACC
Found at i:68150289 original size:62 final size:62
Alignment explanation
Indices: 68150156--68150289 Score: 189
Period size: 62 Copynumber: 2.2 Consensus size: 62
68150146 ACATTCACAT
* * * * *
68150156 TCTAATTCTGTTACCTGATACTGATTCTAATTCTGTTACCTATTTCTGATTTTGATTCTGAT
1 TCTAGTTCTGTTACCTGATACTGATTCTAATTCTGTTACCTAATTCTGATTCTCATTCTGAC
* *
68150218 TCT-GATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTCATTTTGAC
1 TCTAG-TTCTGTTACCTGATACTGATTCTAATTCTGTTACCTAATTCTGATTCTCATTCTGAC
68150280 TCTAGTTCTG
1 TCTAGTTCTG
68150290 ATAATGTTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
62 62 0.98
63 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (62 bp):
TCTAGTTCTGTTACCTGATACTGATTCTAATTCTGTTACCTAATTCTGATTCTCATTCTGAC
Found at i:68151755 original size:2 final size:2
Alignment explanation
Indices: 68151748--68151774 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68151738 CCGATCGGAG
68151748 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68151775 GAGTACGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68151842 original size:29 final size:29
Alignment explanation
Indices: 68151808--68151939 Score: 92
Period size: 29 Copynumber: 4.6 Consensus size: 29
68151798 TACTCGATTT
* * *
68151808 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
68151837 CGCACA--TAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
68151864 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
68151893 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
68151922 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
68151940 TATTTCCAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
27 21 0.24
29 68 0.76
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:68151898 original size:56 final size:58
Alignment explanation
Indices: 68151807--68151964 Score: 180
Period size: 58 Copynumber: 2.7 Consensus size: 58
68151797 ATACTCGATT
** * ** * *
68151807 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACA-TAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTAGTGCCATACACTTCCAGCA
* *
68151863 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC-TAGTGCCATACACTTCCAGCA
68151922 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC-TAGTGC
68151965 TAATCTCGTC
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
55 4 0.04
56 26 0.29
58 58 0.65
59 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTAGTGCCATACACTTCCAGCA
Found at i:68151940 original size:29 final size:29
Alignment explanation
Indices: 68151865--68151964 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
68151855 CTTCGAGCTC
68151865 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68151894 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68151923 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68151952 GCACACTTAGTGC
1 GCACACTTAGTGC
68151965 TAATCTCGTC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:68159304 original size:29 final size:29
Alignment explanation
Indices: 68159270--68159374 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
68159260 TACTCGATTT
* * *
68159270 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
68159299 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
68159328 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
68159357 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
68159375 TATTTCCAGC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:68159375 original size:29 final size:29
Alignment explanation
Indices: 68159329--68159399 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
68159319 CTTCGAGCTC
68159329 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68159358 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68159387 GCACACTTAGTGC
1 GCACACTTAGTGC
68159400 TAATCTCGTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:68166753 original size:29 final size:29
Alignment explanation
Indices: 68166719--68166852 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
68166709 TACTCGATTT
* * *
68166719 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
68166748 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
68166777 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
68166806 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
68166835 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
68166853 TATTTCCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:68166811 original size:58 final size:59
Alignment explanation
Indices: 68166718--68166877 Score: 200
Period size: 58 Copynumber: 2.7 Consensus size: 59
68166708 ATACTCGATT
** * ** * * *
68166718 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
68166776 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
68166835 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
68166878 TAATCTCGTC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 85 0.94
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:68166853 original size:29 final size:29
Alignment explanation
Indices: 68166778--68166877 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
68166768 CTTCGAGCTC
68166778 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68166807 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68166836 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68166865 GCACACTTAGTGC
1 GCACACTTAGTGC
68166878 TAATCTCGTC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:68175113 original size:34 final size:33
Alignment explanation
Indices: 68175073--68175154 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
68175063 GCCCAGATTG
**
68175073 CTACTGTTACTGAAACGAGCTCAGGCCCGGACTA
1 CTACTGTTACTGAAACGAGCTC-GGCCCAAACTA
* * *
68175107 CTACTGTTACT-AAGACGGGCTCGGCCCAAATTG
1 CTACTGTTACTGAA-ACGAGCTCGGCCCAAACTA
68175140 CTACTGTTACTGAAA
1 CTACTGTTACTGAAA
68175155 TGGGCTAAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
33 21 0.51
34 20 0.49
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (33 bp):
CTACTGTTACTGAAACGAGCTCGGCCCAAACTA
Found at i:68175160 original size:33 final size:34
Alignment explanation
Indices: 68175063--68175167 Score: 124
Period size: 34 Copynumber: 3.1 Consensus size: 34
68175053 ATGGGCTTAT
*
68175063 GCCCAGATTGCTACTGTTACTGAAACGAGCTCAG
1 GCCCAGATTGCTACTGTTACTGAAACGGGCTCAG
* * *
68175097 GCCCGGACTACTACTGTTACT-AAGACGGGCTC-G
1 GCCCAGATTGCTACTGTTACTGAA-ACGGGCTCAG
* * *
68175130 GCCCAAATTGCTACTGTTACTGAAATGGGCTAAG
1 GCCCAGATTGCTACTGTTACTGAAACGGGCTCAG
68175164 GCCC
1 GCCC
68175168 TAGCTATTAC
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
33 26 0.45
34 32 0.55
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (34 bp):
GCCCAGATTGCTACTGTTACTGAAACGGGCTCAG
Found at i:68182593 original size:34 final size:34
Alignment explanation
Indices: 68182549--68182662 Score: 120
Period size: 34 Copynumber: 3.4 Consensus size: 34
68182539 ATATGTTAAT
*
68182549 GGGCTTAGGCCCAGACTACTACTATTACTGAAAC
1 GGGCTCAGGCCCAGACTACTACTATTACTGAAAC
* * * **
68182583 GGGCTCAGGCCTAAACTACTACTGTTACTGAGTC
1 GGGCTCAGGCCCAGACTACTACTATTACTGAAAC
* ** * *
68182617 GGGCTCAGGCCTAGGTTGCTACTATTACTGAAAT
1 GGGCTCAGGCCCAGACTACTACTATTACTGAAAC
*
68182651 GGGCTAAGGCCC
1 GGGCTCAGGCCC
68182663 TGGCTGTTAC
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (34 bp):
GGGCTCAGGCCCAGACTACTACTATTACTGAAAC
Found at i:68184627 original size:30 final size:28
Alignment explanation
Indices: 68184586--68184642 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
68184576 AATTCATCTA
68184586 TGGAAAATAAAATAAAGAAAAGGATGATAT
1 TGGAAAATAAAAT-AAGAAAA-GATGATAT
* *
68184616 TGGAAAGTAAAATAATAAAAGATGATA
1 TGGAAAATAAAATAAGAAAAGATGATA
68184643 AATGATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.28
29 6 0.24
30 12 0.48
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (28 bp):
TGGAAAATAAAATAAGAAAAGATGATAT
Found at i:68189651 original size:40 final size:40
Alignment explanation
Indices: 68189566--68189716 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
68189556 AATTGAATGA
* * *
68189566 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
68189606 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
68189647 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
68189686 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
68189717 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:68189730 original size:40 final size:40
Alignment explanation
Indices: 68189603--68189732 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
68189593 ATGCTGGAAA
* * * *
68189603 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
68189643 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
68189683 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
68189723 TTATATCCGG
1 TTATATCCGG
68189733 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:68197853 original size:27 final size:28
Alignment explanation
Indices: 68197797--68197866 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
68197787 TTATTTGTAC
68197797 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68197825 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
68197852 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68197867 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68197877 original size:27 final size:27
Alignment explanation
Indices: 68197797--68197878 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
68197787 TTATTTGTAC
* *
68197797 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68197825 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
68197852 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68197879 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68205660 original size:27 final size:28
Alignment explanation
Indices: 68205604--68205673 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
68205594 AAATTTGTAC
68205604 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68205632 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
68205659 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68205674 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68205684 original size:27 final size:27
Alignment explanation
Indices: 68205604--68205685 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
68205594 AAATTTGTAC
* *
68205604 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68205632 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
68205659 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68205686 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68211795 original size:29 final size:29
Alignment explanation
Indices: 68211762--68211893 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
68211752 CCTCCGAACT
** * * *
68211762 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
68211791 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68211820 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68211849 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68211878 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68211894 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68215470 original size:27 final size:26
Alignment explanation
Indices: 68215428--68215532 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 26
68215418 AGGAAGCGTC
*
68215428 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
68215455 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
68215482 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
68215510 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
68215533 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.03
27 49 0.72
28 17 0.25
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:68215532 original size:54 final size:54
Alignment explanation
Indices: 68215428--68215539 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
68215418 AGGAAGCGTC
* *
68215428 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
* * **
68215482 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTATT
68215536 CTGG
1 CTGG
68215540 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
Found at i:68219524 original size:27 final size:26
Alignment explanation
Indices: 68219486--68219570 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 26
68219476 CAAGTGCCCC
68219486 GTGGCTAC-GCCATAATTATCTGATCTG
1 GTGGCT-CTGCCA-AATTATCTGATCTG
* * *
68219513 GTGGCTCTGCCACATATATTTGTTCTG
1 GTGGCTCTGCCAAAT-TATCTGATCTG
*
68219540 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCA-AATTATCTG-ATCTG
68219568 GTG
1 GTG
68219571 ACTTTGTCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 3 0.06
27 36 0.75
28 9 0.19
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCAAATTATCTGATCTG
Found at i:68219587 original size:27 final size:27
Alignment explanation
Indices: 68219500--68219587 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
68219490 CTACGCCATA
68219500 ATTATCTG-ATCTGGTGGCTCTGCCAC
1 ATTATCTGTATCTGGTGGCTCTGCCAC
*
68219526 ATATATTTGT-TCTGGTGGCTCTGCCAC
1 AT-TATCTGTATCTGGTGGCTCTGCCAC
* * *
68219553 GATTATCTGTATCTGGTGACTTTGTCAC
1 -ATTATCTGTATCTGGTGGCTCTGCCAC
68219581 ATTATCT
1 ATTATCT
68219588 ATTCTGGCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
26 2 0.04
27 35 0.66
28 16 0.30
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (27 bp):
ATTATCTGTATCTGGTGGCTCTGCCAC
Found at i:68222713 original size:23 final size:23
Alignment explanation
Indices: 68222686--68222730 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
68222676 AATATGTCCC
68222686 ATAAGTGAAGCATATGGCTAACT
1 ATAAGTGAAGCATATGGCTAACT
68222709 ATAAGTGAAGCATATGGCTAAC
1 ATAAGTGAAGCATATGGCTAAC
68222731 ACTCTCTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.24
Consensus pattern (23 bp):
ATAAGTGAAGCATATGGCTAACT
Found at i:68238488 original size:55 final size:55
Alignment explanation
Indices: 68238416--68238547 Score: 156
Period size: 55 Copynumber: 2.4 Consensus size: 55
68238406 GTCATGTGCG
* ** **
68238416 AACCTGCCAAAACAACACGGGCATGCGACATGCCCGTGCCTTGAAACCGTGGCTA
1 AACCTGCCAAAATAACACGGGCATGCGACACACCCGTGCCAAGAAACCGTGGCTA
* * * * * *
68238471 AACCTGTCAAATTAACACGGGCATGTGACACACCCGTGCCAAGCAACCGTGGGTG
1 AACCTGCCAAAATAACACGGGCATGCGACACACCCGTGCCAAGAAACCGTGGCTA
*
68238526 AACCTGCCAAAATAAAACGGGC
1 AACCTGCCAAAATAACACGGGC
68238548 GTGGGAGAAG
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.32, C:0.30, G:0.23, T:0.14
Consensus pattern (55 bp):
AACCTGCCAAAATAACACGGGCATGCGACACACCCGTGCCAAGAAACCGTGGCTA
Found at i:68249049 original size:49 final size:49
Alignment explanation
Indices: 68248988--68249292 Score: 456
Period size: 49 Copynumber: 6.3 Consensus size: 49
68248978 ATGAGATATA
*
68248988 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68249037 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68249086 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
68249135 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68249184 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
68249231 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68249278 TATAAATGTGATAAG
1 TATATATGTGATAAG
68249293 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 56 0.23
49 184 0.77
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:68254204 original size:40 final size:40
Alignment explanation
Indices: 68254146--68254292 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
68254136 TGAATGATAC
* * *
68254146 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * *
68254186 CCGGGCTAAGACCTGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* ** *
68254226 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
68254266 CCGGGTTAAGACCCGAAGGCAATTGTG
1 CCGGGCTAAGACCCGAAGGCATTTGTG
68254293 TTTGTGGTTA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 88 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:68278086 original size:46 final size:46
Alignment explanation
Indices: 68278019--68278193 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
68278009 TGTAACCCAC
*
68278019 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
68278065 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * *
68278115 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
68278158 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
68278194 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:68278155 original size:93 final size:93
Alignment explanation
Indices: 68278027--68278198 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68278017 ACCCATAAGT
* * *
68278027 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68278092 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
68278120 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68278185 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
68278199 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:68280637 original size:15 final size:15
Alignment explanation
Indices: 68280589--68280655 Score: 64
Period size: 15 Copynumber: 4.5 Consensus size: 15
68280579 GAAAACTGAA
68280589 AAAGAAATCCA-AGAT
1 AAAGAAATCCAGA-AT
* * * *
68280604 AGAGAAACCCGGAAC
1 AAAGAAATCCAGAAT
68280619 AAAGAAATCCAGAAT
1 AAAGAAATCCAGAAT
* *
68280634 AAAGAGATCCAGGAT
1 AAAGAAATCCAGAAT
68280649 AAAGAAA
1 AAAGAAA
68280656 CCCAAGATAC
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
15 39 0.98
16 1 0.03
ACGTcount: A:0.57, C:0.15, G:0.19, T:0.09
Consensus pattern (15 bp):
AAAGAAATCCAGAAT
Found at i:68280664 original size:15 final size:15
Alignment explanation
Indices: 68280589--68280664 Score: 57
Period size: 15 Copynumber: 5.1 Consensus size: 15
68280579 GAAAACTGAA
68280589 AAAGAAATCCAAGAT
1 AAAGAAATCCAAGAT
* ** *
68280604 AGAGAAA-CCCGGAAC
1 AAAGAAATCCAAG-AT
68280619 AAAGAAATCC-AGAAT
1 AAAGAAATCCAAG-AT
* *
68280634 AAAGAGATCCAGGAT
1 AAAGAAATCCAAGAT
*
68280649 AAAGAAACCCAAGAT
1 AAAGAAATCCAAGAT
68280664 A
1 A
68280665 CGATACTATG
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
14 3 0.07
15 40 0.87
16 3 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.09
Consensus pattern (15 bp):
AAAGAAATCCAAGAT
Found at i:68283711 original size:93 final size:93
Alignment explanation
Indices: 68283583--68283752 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
68283573 GCCCATAAGT
* * *
68283583 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68283648 CGAGCTCGGATGTCTAGTTACATCTCAC
66 CGAGCTCGGATGTCTAGTTACATCTCAC
*
68283676 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68283741 CGAGTTCGGATG
66 CGAGCTCGGATG
68283753 CCCAAATATC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGTCTAGTTACATCTCAC
Found at i:68283750 original size:46 final size:46
Alignment explanation
Indices: 68283575--68283750 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
68283565 TGTAACCAGC
* * *
68283575 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68283621 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
68283671 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68283714 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
68283751 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Done.