Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 228 of 770
Found at i:68291616 original size:41 final size:40
Alignment explanation
Indices: 68291567--68291729 Score: 172
Period size: 41 Copynumber: 4.0 Consensus size: 40
68291557 AGCCCGATTC
*
68291567 TTAG-CACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACTAAGCTCGGA
* * *
68291606 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTAAG-TCTGG-
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAAACTAAGCTC-GGA
* *
68291646 TTATGACACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTCAAAAGCCCTTCGAAACTAAGCTCGG--A
* * *
68291689 TTAG-CACAGGCTCAAAGGCCCTTCGAAACAAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACTAAGCTCGGA
68291728 TT
1 TT
68291730 TAAACCCCAA
Statistics
Matches: 104, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
39 7 0.07
40 33 0.32
41 60 0.58
42 1 0.01
43 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAAACTAAGCTCGGA
Found at i:68300101 original size:41 final size:41
Alignment explanation
Indices: 68300052--68300208 Score: 153
Period size: 41 Copynumber: 3.9 Consensus size: 41
68300042 AGCCCGATTC
*
68300052 TTAG-CACTGGCTCAAAAGCCCTTCGAGACTAAGCT-CGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACTAAGCTACGGA
* * * *
68300091 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTAAG-TCCGG-
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAAACTAAGCTACGGA
* * * *
68300131 TTATGACACTGGCTCTAAAGCCCTTCGAAACTAAGTTAAGTTA
1 TTA-GACACTGGCTCAAAAGCCCTTCGAAACTAAGCTACG-GA
* *
68300174 TTAG-CACTGGCTCAAAGGCCCTTCGAAACCAAGCT
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACTAAGCT
68300209 TGGATTTAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
39 4 0.04
40 30 0.31
41 59 0.61
42 1 0.01
43 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (41 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAAACTAAGCTACGGA
Found at i:68302832 original size:62 final size:63
Alignment explanation
Indices: 68302753--68302881 Score: 224
Period size: 62 Copynumber: 2.1 Consensus size: 63
68302743 TATATAGCTA
*
68302753 AATAGTTTAATACACATAGATTATATTTTATATTATGTCAAGTTAAATAAAT-AAATAAAGAT
1 AATAGTTTAATACACATAGATTATATTTTATATTATGTCAAGTTAAATAAATAAAAAAAAGAT
* *
68302815 AATAGTTTAATAGACATAGATTATGTTTTATATTATGTCAAGTTAAATAAATAAAAAAAAGAT
1 AATAGTTTAATACACATAGATTATATTTTATATTATGTCAAGTTAAATAAATAAAAAAAAGAT
68302878 AATA
1 AATA
68302882 ATATTGAATC
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
62 50 0.79
63 13 0.21
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (63 bp):
AATAGTTTAATACACATAGATTATATTTTATATTATGTCAAGTTAAATAAATAAAAAAAAGAT
Found at i:68304737 original size:18 final size:18
Alignment explanation
Indices: 68304714--68304749 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
68304704 CGACTTAAAC
*
68304714 TCGACTTAAACTCGTCAA
1 TCGACTTAAACTCATCAA
68304732 TCGACTTAAACTCATCAA
1 TCGACTTAAACTCATCAA
68304750 GTTAAATTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (18 bp):
TCGACTTAAACTCATCAA
Found at i:68312371 original size:15 final size:15
Alignment explanation
Indices: 68312338--68312376 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
68312328 CTTATTCCTC
68312338 TCTTTTTCCTTCATTT
1 TCTTTTTCCTT-ATTT
68312354 TCTTTCTTCCTT-TTT
1 TCTTT-TTCCTTATTT
68312369 TCTTTTTC
1 TCTTTTTC
68312377 TTCTAGCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 3 0.14
15 8 0.36
16 5 0.23
17 6 0.27
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.72
Consensus pattern (15 bp):
TCTTTTTCCTTATTT
Found at i:68323402 original size:40 final size:40
Alignment explanation
Indices: 68323332--68323539 Score: 197
Period size: 40 Copynumber: 5.2 Consensus size: 40
68323322 CAATTGAATG
* * * *
68323332 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * * *
68323372 ATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
68323412 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * *
68323452 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAG-ACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTA-ATT
* **
68323492 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
68323532 ATATCCGG
1 ATATCCGG
68323540 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 5 0.04
40 133 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:68323474 original size:80 final size:80
Alignment explanation
Indices: 68323334--68323539 Score: 250
Period size: 80 Copynumber: 2.6 Consensus size: 80
68323324 ATTGAATGAT
* * * * * * *
68323334 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCTGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
68323399 TGTGCTAGTCACTAC
66 TGTGCAAGACACTAC
* * * *
68323414 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
** *
68323479 TGTGCAAGACGTTAT
66 TGTGCAAGACACTAC
* *
68323494 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
68323540 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 107 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGACACTAC
Found at i:68341161 original size:28 final size:29
Alignment explanation
Indices: 68341094--68341163 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 29
68341084 ATAGTGAATC
*
68341094 CGCACACTTAGTGCTATATACATTCAGCT
1 CGCACACTTAGTGCTATATACATTCAACT
68341123 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATACATTC-AACT
68341151 CGCACACTTAGTG
1 CGCACACTTAGTG
68341164 TTGTACAACT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATACATTCAACT
Found at i:68344675 original size:46 final size:46
Alignment explanation
Indices: 68344525--68344698 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
68344515 TGTAACCCGC
* *
68344525 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68344570 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68344619 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68344662 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68344699 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 9, Indels: 21
0.78 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 22 0.20
45 15 0.14
46 35 0.32
47 24 0.22
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68347621 original size:40 final size:40
Alignment explanation
Indices: 68347496--68347702 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
68347486 CAATTGAATG
* * * * **
68347496 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
68347536 ATATCC-GGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
*
68347575 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
68347615 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* *
68347655 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
68347695 ATATCCGG
1 ATATCCGG
68347703 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 30 0.21
40 111 0.78
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:68347664 original size:80 final size:80
Alignment explanation
Indices: 68347496--68347702 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 80
68347486 CAATTGAATG
* * * * * *
68347496 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCC-GGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
*
68347560 ATTGTGCTAGTGACT
66 ATTGTGCAAGTGACT
* * * *
68347575 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
* *
68347640 TTTGTGCAAGTCG-TT
66 ATTGTGCAAGT-GACT
* *
68347655 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
68347703 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
79 38 0.35
80 70 0.64
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAGTGACT
Found at i:68352470 original size:29 final size:29
Alignment explanation
Indices: 68352437--68352519 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
68352427 GTGTCGAGAT
68352437 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68352466 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
68352495 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
68352520 AAATACGGCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68360540 original size:29 final size:29
Alignment explanation
Indices: 68360507--68360589 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
68360497 GTGTCGAGAT
68360507 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68360536 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
68360565 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
68360590 AAAATACGGC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68367384 original size:71 final size:71
Alignment explanation
Indices: 68367300--68367463 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68367290 CGATTTGTCT
68367300 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68367365 CTTTCA
66 CTTTCA
68367371 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68367436 CTTTCA
66 CTTTCA
68367442 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
68367464 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:68367501 original size:71 final size:70
Alignment explanation
Indices: 68367300--68367497 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
68367290 CGATTTGTCT
* * * *
68367300 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
68367365 CTTTCA
65 CTTTCA
* * * *
68367371 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
68367436 CTTTCA
65 CTTTCA
* *
68367442 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
68367498 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:68371861 original size:27 final size:28
Alignment explanation
Indices: 68371804--68371873 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
68371794 AAATTTGTAC
**
68371804 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
68371832 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
68371859 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68371874 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:68375123 original size:24 final size:24
Alignment explanation
Indices: 68375091--68375153 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
68375081 AATCTCAATT
68375091 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
68375115 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
68375139 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
68375154 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:68379279 original size:47 final size:47
Alignment explanation
Indices: 68379207--68379701 Score: 720
Period size: 47 Copynumber: 10.4 Consensus size: 47
68379197 CCCTTCGGGA
* * * * * * *
68379207 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68379254 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68379301 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68379348 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68379397 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
68379446 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
68379495 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68379542 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68379589 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
68379638 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68379685 CTTATCACATATATACA
1 CTTATCACATATATACA
68379702 TCTCATACAT
Statistics
Matches: 411, Mismatches: 29, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 235 0.57
49 170 0.41
51 6 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68379285 original size:25 final size:25
Alignment explanation
Indices: 68379257--68379335 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
68379247 ACTCGGCCCT
*
68379257 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
68379282 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
68379304 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
68379329 ATCACAT
1 ATCACAT
68379336 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:68379507 original size:143 final size:142
Alignment explanation
Indices: 68379218--68379701 Score: 767
Period size: 143 Copynumber: 3.4 Consensus size: 142
68379208 TTATCACATT
* * * * *
68379218 TATA-CACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACACTTTCACATTC
1 TATAGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTC
* * *
68379282 ATCACATTGGCCATTCGGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTA
66 ATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTA
*
68379345 GGCCTTATCACATA
131 GGCCTTATCTC--A
* * *
68379359 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACA
1 TATA-GCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT--ACACTTTCACA
*
68379424 TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCA
63 TTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCA
68379489 TTAGGCCTTATCTCA
128 TTAGGCCTTATCTCA
68379504 TATATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATT
1 TATA-GCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATT
68379569 CATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATT
65 CATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATT
68379634 AGGCCTTATCTCA
130 AGGCCTTATCTCA
68379647 TATATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 TATA-GCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
68379702 TCTCATACAT
Statistics
Matches: 321, Mismatches: 16, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
141 4 0.01
143 184 0.57
145 89 0.28
147 44 0.14
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (142 bp):
TATAGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTC
ATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTA
GGCCTTATCTCA
Found at i:68383359 original size:27 final size:27
Alignment explanation
Indices: 68383337--68383643 Score: 147
Period size: 27 Copynumber: 11.6 Consensus size: 27
68383327 AGAATTACTG
*
68383337 AAATACCCTTAGTTTACAAAATTA-CT
1 AAATACCCTTAGTTTACAAAATTACCA
* * *
68383363 GAATACCTTTGGTTTACAAAATTACCA
1 AAATACCCTTAGTTTACAAAATTACCA
* * * *
68383390 AAATA-CCATCGATTAGCAAAATTACTA
1 AAATACCCTTAGTTTA-CAAAATTACCA
* **
68383417 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCTTAGTTTACAAAATTACCA
* **
68383444 AAATA-CCTTAATTTATGAAATTA-C-
1 AAATACCCTTAGTTTACAAAATTACCA
* * *
68383468 --ATGCCCTTGACCTGT--AAAATTACCA
1 AAATACCCTT-A-GTTTACAAAATTACCA
* * *
68383493 AAATACCCTCGACTTGT--AAAATTACCG
1 AAATACCCT-TAGTT-TACAAAATTACCA
* * *
68383520 AAATACCCTTAATTTAGAAAATTACAA
1 AAATACCCTTAGTTTACAAAATTACCA
* * *
68383547 AAATACCCCTAATTTACAAAATTA-TA
1 AAATACCCTTAGTTTACAAAATTACCA
*
68383573 GAAATACCCTTGACTTT-CAAAAATTA-CA
1 -AAATACCCTT-AGTTTAC-AAAATTACCA
* * **
68383601 GAAATACCATTGGTTTGTAAAATTACCA
1 -AAATACCCTTAGTTTACAAAATTACCA
*
68383629 AAATACCCTTGGTTT
1 AAATACCCTTAGTTT
68383644 GTAGATTTAC
Statistics
Matches: 219, Mismatches: 43, Indels: 37
0.73 0.14 0.12
Matches are distributed among these distances:
22 2 0.01
23 10 0.05
24 2 0.01
25 4 0.02
26 47 0.21
27 124 0.57
28 30 0.14
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATACCCTTAGTTTACAAAATTACCA
Found at i:68383550 original size:54 final size:55
Alignment explanation
Indices: 68383483--68383639 Score: 151
Period size: 55 Copynumber: 2.9 Consensus size: 55
68383473 CTTGACCTGT
* *
68383483 AAAATTACCAAAATACCCTCGACTTGTAAAATTACCGAAATACCCTT-AATTT-A
1 AAAATTACAAAAATACCCTCGAATTGTAAAATTACCGAAATACCCTTGAATTTCA
* ** *
68383536 GAAAATTACAAAAATACCC-CTAATT-TACAAAATTATAGAAATACCCTTGACTTTCA
1 -AAAATTACAAAAATACCCTCGAATTGT--AAAATTACCGAAATACCCTTGAATTTCA
* * * ** *
68383592 AAAATTACAGAAATACCATTGGTTTGTAAAATTACCAAAATACCCTTG
1 AAAATTACAAAAATACCCTCGAATTGTAAAATTACCGAAATACCCTTG
68383640 GTTTGTAGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
52 1 0.01
53 4 0.05
54 35 0.43
55 38 0.46
56 3 0.04
57 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.29
Consensus pattern (55 bp):
AAAATTACAAAAATACCCTCGAATTGTAAAATTACCGAAATACCCTTGAATTTCA
Found at i:68383644 original size:27 final size:27
Alignment explanation
Indices: 68383380--68383666 Score: 196
Period size: 27 Copynumber: 10.8 Consensus size: 27
68383370 TTTGGTTTAC
* * * *
68383380 AAAATTACCAAAATACCATCGATTAGC
1 AAAATTACCAAAATACCCTTGATTTGT
* *
68383407 AAAATTACTAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGA-TTTGT
* *
68383434 AAAATTACCAAAATA-CCTTAATTTAT
1 AAAATTACCAAAATACCCTTGATTTGT
* * **
68383460 GAAATTA-C---ATGCCCTTGACCTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* *
68383483 AAAATTACCAAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* *
68383510 AAAATTACCGAAATACCCTTAATTTAG-
1 AAAATTACCAAAATACCCTTGATTT-GT
* * * **
68383537 AAAATTACAAAAATACCCCTAATTTAC
1 AAAATTACCAAAATACCCTTGATTTGT
* **
68383564 AAAATTA-TAGAAATACCCTTGACTTTCA
1 AAAATTACCA-AAATACCCTTGA-TTTGT
* *
68383592 AAAATTA-CAGAAATACCATTGGTTTGT
1 AAAATTACCA-AAATACCCTTGATTTGT
*
68383619 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * *
68383646 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
68383667 TAGGGTGAAA
Statistics
Matches: 207, Mismatches: 41, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
22 2 0.01
23 13 0.06
24 1 0.00
25 1 0.00
26 15 0.07
27 150 0.72
28 25 0.12
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTGT
Found at i:68384150 original size:22 final size:22
Alignment explanation
Indices: 68384102--68384150 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
68384092 AGGGCTTTGC
68384102 GCCAACCTACATATGGCTCTAT
1 GCCAACCTACATATGGCTCTAT
* * *
68384124 TCCAACCTA-ATTATGGCTGTGT
1 GCCAACCTACA-TATGGCTCTAT
68384146 GCCAA
1 GCCAA
68384151 ACGTATTTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (22 bp):
GCCAACCTACATATGGCTCTAT
Found at i:68387482 original size:40 final size:40
Alignment explanation
Indices: 68387414--68387576 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 40
68387404 GAATGATACT
* ** * *
68387414 CGGGCTAAGTCCCGAAGATATTTATGCTAGTGATTATATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATC
* *
68387454 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATC
* *
68387494 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTATATC
* * *
68387534 CGGGCTAAAACCCGAAGGC-ATTCGTGCTTGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGATTATATC
68387574 CGG
1 CGG
68387577 TTATATTCTG
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.04
40 99 0.94
41 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATC
Found at i:68395553 original size:40 final size:40
Alignment explanation
Indices: 68395496--68395657 Score: 175
Period size: 40 Copynumber: 4.0 Consensus size: 40
68395486 TGAATGATAC
* *
68395496 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGACATTTGTGCTAGTGATTATAT
* * * * *
68395536 CCGGGTTTAGACTCGAAGGA-AATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAA-GACATTTGTGCTAGTGATTATAT
* *
68395576 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGACATTTGTGCTAG-TGATTATAT
* * * *
68395616 CCGGGCTAAGACCCGAAGGCATTCGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGACATTTGTGCTAGTGATTATAT
68395656 CC
1 CC
68395658 AGTTATATTC
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGACATTTGTGCTAGTGATTATAT
Found at i:68399825 original size:42 final size:43
Alignment explanation
Indices: 68399778--68399893 Score: 123
Period size: 42 Copynumber: 2.7 Consensus size: 43
68399768 GATTACCGGG
68399778 ATATGAGATTCGTGTAAGACCATGTCTGGGAC-ATTGGCATCA
1 ATATGAGATTCGTGTAAGACCATGTCTGGGACTATTGGCATCA
* * *
68399820 ATATGAGATTCGTGTAAAACCATAG-CAGGG-CTATTGGCATCG
1 ATATGAGATTCGTGTAAGACCAT-GTCTGGGACTATTGGCATCA
* * *
68399862 ATAT-ACTATATCATGTAAGACCATATCTGGGA
1 ATATGA-GAT-TCGTGTAAGACCATGTCTGGGA
68399894 TATGACATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.03
42 41 0.68
43 17 0.28
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (43 bp):
ATATGAGATTCGTGTAAGACCATGTCTGGGACTATTGGCATCA
Found at i:68405420 original size:50 final size:47
Alignment explanation
Indices: 68405348--68405563 Score: 194
Period size: 48 Copynumber: 4.6 Consensus size: 47
68405338 TCCATCAAGT
* * *
68405348 CGATGCCAT-CCCAAACATGGTCTTACACT-AGCTCTCTCATATCCGTGC
1 CGATGCCATGTCCAAACATGGTCTTACACTGA-CAC-CTC-TATACGTGC
* *
68405396 CGATGCCATGTCCAAGACATGGTCTTACACTGACACCTCTATACATGA
1 CGATGCCATGTCCAA-ACATGGTCTTACACTGACACCTCTATACGTGC
* * *
68405444 TGATGCCATCTCCTAGACATGGTCTTACACTGACACCTCTATACGTGC
1 CGATGCCATGTCC-AAACATGGTCTTACACTGACACCTCTATACGTGC
* * * *
68405492 AGATGCCATGTCCCAAAGATGGTCTTACACTAACACATCT-T--GTAGC
1 CGATGCCATGT-CCAAACATGGTCTTACACTGACACCTCTATACGT-GC
*
68405538 CGATG-CATGTCCCAGACAT-GTCTTAC
1 CGATGCCATGT-CCAAACATGGTCTTAC
68405564 CTTGGCTTAC
Statistics
Matches: 143, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 7 0.05
45 14 0.10
46 6 0.04
47 1 0.01
48 87 0.61
49 10 0.07
50 17 0.12
51 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCAAACATGGTCTTACACTGACACCTCTATACGTGC
Found at i:68405497 original size:96 final size:96
Alignment explanation
Indices: 68405349--68405527 Score: 240
Period size: 96 Copynumber: 1.9 Consensus size: 96
68405339 CCATCAAGTC
* * *
68405349 GATGCCATCCCAAACATGGTCTTACACTAGCTCTCTCATATCCGTGCCGATGCCATGT-CCAAGA
1 GATGCCATCCCAAACATGGTCTTACACTAGCACTCTCATATACGTGCAGATGCCATGTCCCAA-A
*
68405413 CATGGTCTTACACTGACACCTCTATACATGAT
65 CATGGTCTTACACTAACACCTCTATACATGAT
*
68405445 GATGCCATCTCCTAGACATGGTCTTACACT-GACAC-CTC-TATACGTGCAGATGCCATGTCCCA
1 GATGCCATC-CC-AAACATGGTCTTACACTAG-CACTCTCATATACGTGCAGATGCCATGTCCCA
*
68405507 AAGATGGTCTTACACTAACAC
63 AACATGGTCTTACACTAACAC
68405528 ATCTTGTAGC
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
96 45 0.62
97 10 0.14
98 18 0.25
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (96 bp):
GATGCCATCCCAAACATGGTCTTACACTAGCACTCTCATATACGTGCAGATGCCATGTCCCAAAC
ATGGTCTTACACTAACACCTCTATACATGAT
Found at i:68405576 original size:46 final size:47
Alignment explanation
Indices: 68405526--68405657 Score: 171
Period size: 47 Copynumber: 2.8 Consensus size: 47
68405516 TTACACTAAC
*
68405526 ACATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACCTTGGCT-T
1 ACATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACATTGGCTCT
* *
68405572 ACATCTCG-AGGCCGATGCATGTCCCAGAAATGGTCTTACATTGGCTCT
1 ACATCTTGTA-GCCGATGCATGTCCCAGACAT-GTCTTACATTGGCTCT
** *
68405620 -CATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
1 ACATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACA
68405658 CTAGCACCCA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 35 0.47
47 37 0.50
48 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (47 bp):
ACATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACATTGGCTCT
Found at i:68405769 original size:56 final size:56
Alignment explanation
Indices: 68405683--68405796 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
68405673 CCCAAATGTC
68405683 ATGGCATGTATATCCGATTCATTTCCTAAGGTTCGAAAAGGAGTTCTACTATCTCA
1 ATGGCATGTATATCCGATTCATTTCCTAAGGTTCGAAAAGGAGTTCTACTATCTCA
*
68405739 ATGGCATGTATATCCGATTCATTTCCTAAGGTTCGAAAGGGAGTTCTACTATCTCA
1 ATGGCATGTATATCCGATTCATTTCCTAAGGTTCGAAAAGGAGTTCTACTATCTCA
68405795 AT
1 AT
68405797 ATTCATCATA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (56 bp):
ATGGCATGTATATCCGATTCATTTCCTAAGGTTCGAAAAGGAGTTCTACTATCTCA
Found at i:68424746 original size:43 final size:43
Alignment explanation
Indices: 68424676--68424846 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
68424666 AGCTCGCACA
* *
68424676 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* *
68424719 ATGCC-ACTGTCCCAGACAG-GGTTTTACACGAAATCAAATA-AG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
* * * * ** * *
68424761 ATGTCAATGTCCCAAACATCATCTTACATGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATC-AAATATCG
*
68424805 ATGCCAACGTCCCAGATGTGGTCTTACACGAAATCAAATATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATC
68424847 AGAATCCTAT
Statistics
Matches: 97, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
42 24 0.25
43 47 0.48
44 26 0.27
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:68425949 original size:13 final size:13
Alignment explanation
Indices: 68425931--68425957 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68425921 CAAAAACATT
68425931 AAAATTTTCATAC
1 AAAATTTTCATAC
68425944 AAAATTTTCATAC
1 AAAATTTTCATAC
68425957 A
1 A
68425958 TATGATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
AAAATTTTCATAC
Found at i:68428213 original size:26 final size:26
Alignment explanation
Indices: 68428148--68428215 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
68428138 TCAGAGCATG
* * *
68428148 GCTTTGCTGTGTTACTATTACTGGTA
1 GCTTTGCTGTGATATTATTACTGGCA
*
68428174 GCTTTGCTATGATATTATTACTGGCA
1 GCTTTGCTGTGATATTATTACTGGCA
*
68428200 GCTTTGCTGCGATATT
1 GCTTTGCTGTGATATT
68428216 GGTGTTTGGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.44
Consensus pattern (26 bp):
GCTTTGCTGTGATATTATTACTGGCA
Found at i:68433435 original size:17 final size:18
Alignment explanation
Indices: 68433405--68433441 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
68433395 AAAATGTTAG
68433405 GAAAAAATTATAATT-TT
1 GAAAAAATTATAATTATT
68433422 GAAAAAA-TATTAATTATT
1 GAAAAAATTA-TAATTATT
68433440 GA
1 GA
68433442 TTGAATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 12 0.67
18 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (18 bp):
GAAAAAATTATAATTATT
Found at i:68434873 original size:55 final size:55
Alignment explanation
Indices: 68434786--68434890 Score: 174
Period size: 55 Copynumber: 1.9 Consensus size: 55
68434776 AACTTCATGT
68434786 CCACACGGCCTAAGACACGGACATGTGACTCAACCATGTGTGACACATGGTTGAG
1 CCACACGGCCTAAGACACGGACATGTGACTCAACCATGTGTGACACATGGTTGAG
** * *
68434841 CCACACGGCCTAAGACATTGACGTGTGGCTCAACCATGTGTGACACATGG
1 CCACACGGCCTAAGACACGGACATGTGACTCAACCATGTGTGACACATGG
68434891 CCTAGTGACA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (55 bp):
CCACACGGCCTAAGACACGGACATGTGACTCAACCATGTGTGACACATGGTTGAG
Found at i:68437223 original size:32 final size:32
Alignment explanation
Indices: 68437161--68437225 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
68437151 TTTGGGTCAC
*
68437161 AACCCATAACAGAATCAATTGGGCCTAGCCCA
1 AACCCATAACAGAATCAAGTGGGCCTAGCCCA
* *
68437193 AACCGATAACAGAA-CAAGTGGTCCTAAGCCCA
1 AACCCATAACAGAATCAAGTGGGCCT-AGCCCA
68437225 A
1 A
68437226 TACAATGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 9 0.31
32 20 0.69
ACGTcount: A:0.40, C:0.29, G:0.17, T:0.14
Consensus pattern (32 bp):
AACCCATAACAGAATCAAGTGGGCCTAGCCCA
Found at i:68449862 original size:15 final size:13
Alignment explanation
Indices: 68449831--68449855 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68449821 TATTTAAAAA
68449831 TTATTTTTTGTGT
1 TTATTTTTTGTGT
68449844 TTATTTTTTGTG
1 TTATTTTTTGTG
68449856 AATTTATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (13 bp):
TTATTTTTTGTGT
Found at i:68454906 original size:39 final size:40
Alignment explanation
Indices: 68454767--68454986 Score: 300
Period size: 40 Copynumber: 5.5 Consensus size: 40
68454757 GCTCGATTGT
* * * *
68454767 CTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATT-TGGTAACTCGCACAAATGC
68454807 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
*
68454847 CTTCGGGAATTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
* *
68454887 CTTC-GGAATTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
* * * *
68454926 CTTCGGGACTTAACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTGGTAAC-TCGCACAAATGC
*
68454967 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
68454987 ACCATTCGAA
Statistics
Matches: 165, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 38 0.23
40 96 0.58
41 31 0.19
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
Found at i:68454926 original size:79 final size:80
Alignment explanation
Indices: 68454767--68454986 Score: 302
Period size: 79 Copynumber: 2.8 Consensus size: 80
68454757 GCTCGATTGT
* *
68454767 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
1 CTTCGGGA-ATTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
68454830 GTAACTCGCACAAATGC
64 GTAACTCGCACAAATGC
* *
68454847 CTTCGGGAATTAACCCGGATTTGGTAACTCGCACAAATGCCTTC-GGAATTAACCCGGATTTGGT
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGT
*
68454911 AACTTGCACAAATGC
66 AACTCGCACAAATGC
* * * * *
68454926 CTTCGGGACTTAACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGAATTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGAT
68454987 ACCATTCGAA
Statistics
Matches: 124, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 59 0.48
80 50 0.40
81 15 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGT
AACTCGCACAAATGC
Found at i:68462704 original size:41 final size:40
Alignment explanation
Indices: 68462537--68462709 Score: 231
Period size: 40 Copynumber: 4.3 Consensus size: 40
68462527 GCTCGATTGT
* * *
68462537 CTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
*
68462577 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
68462617 CTTCGGGAATTAACCCGGATTTGGTAACTCGTACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
68462657 CTTCGGGACTTAACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
68462698 CTTCGGGACTTA
1 CTTCGGGACTTA
68462710 GCCTGGATAC
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 96 0.81
41 23 0.19
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:68464453 original size:15 final size:15
Alignment explanation
Indices: 68464433--68464461 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
68464423 CCCCCTTTTT
68464433 TCTTTTTTCTCTTTC
1 TCTTTTTTCTCTTTC
68464448 TCTTTTTTCTCTTT
1 TCTTTTTTCTCTTT
68464462 TATTAGGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TCTTTTTTCTCTTTC
Found at i:68472065 original size:42 final size:43
Alignment explanation
Indices: 68471965--68472103 Score: 122
Period size: 42 Copynumber: 3.2 Consensus size: 43
68471955 TGAAATATCG
* * * * * *
68471965 TGTAAGACCGTGTCTAGGACACAGGCCTCGAT-TTGAGATTTACG
1 TGTAAGACCATGTCTGGGACAAAGGCATCGATACTGA-A-TTACA
* ** * *
68472009 TGTAAGACCATGTCTTGGACATCGGTATC-ATATCTG-ATTTCA
1 TGTAAGACCATGTCTGGGACAAAGGCATCGATA-CTGAATTACA
*
68472051 TGTAAGACCCTGTCTGGGACAAAGGCATCGATACTGAATTACA
1 TGTAAGACCATGTCTGGGACAAAGGCATCGATACTGAATTACA
68472094 TGTAAGACCA
1 TGTAAGACCA
68472104 CATTCGGGAC
Statistics
Matches: 75, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
42 30 0.40
43 20 0.27
44 23 0.31
45 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAAAGGCATCGATACTGAATTACA
Found at i:68480572 original size:43 final size:42
Alignment explanation
Indices: 68480403--68480573 Score: 125
Period size: 43 Copynumber: 4.0 Consensus size: 42
68480393 ATAGGATTTC
* * **
68480403 AATATTT-ATTATCGTGTAAAACCACGTCTGGGATGTTGGCAT
1 AATATTTGATTA-CATGTAAGACCACGTCTGGGACATTGGCAT
* * *
68480445 CGAT-TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 -AATATT-TGA-TTACATGTAAGACCACGTCTGGGACATTGGCAT
** * * * *
68480489 CGTATATGATTTCATGTAAGAACCTA--TCTGGGATAGTGGCAT
1 AATATTTGATTACATGTAAG-ACC-ACGTCTGGGACATTGGCAT
*
68480531 AAATATTTGATTACATGTAAGACCACGTCTAGGACATTGGCAT
1 -AATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
68480574 TGTACGAACT
Statistics
Matches: 100, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
41 1 0.01
42 28 0.28
43 39 0.39
44 29 0.29
45 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (42 bp):
AATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:68487294 original size:42 final size:43
Alignment explanation
Indices: 68487247--68487359 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 43
68487237 CATTGTGTAA
*
68487247 CGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGA-TTT
1 CGTGTAAGACCATGTCTGGGACATGGCATGGATATGAGACTTT
68487289 CGTGTAAGACCATGTCTGGGACATGGCATGGATATGAGACTTT
1 CGTGTAAGACCATGTCTGGGACATGGCATGGATATGAGACTTT
*
68487332 -ATGTAAGACCATAGT-T-GGACTATGGCAT
1 CGTGTAAGACCAT-GTCTGGGAC-ATGGCAT
68487360 CAAGTAAACG
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
41 4 0.06
42 57 0.86
43 5 0.08
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATGGCATGGATATGAGACTTT
Found at i:68491333 original size:40 final size:40
Alignment explanation
Indices: 68491288--68491455 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
68491278 CGGAATATAA
68491288 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68491328 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
68491368 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68491408 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
68491448 CCGGATAT
1 CCGGATAT
68491456 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68498208 original size:12 final size:12
Alignment explanation
Indices: 68498193--68498226 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
68498183 TTCTAATTCT
68498193 AATTTTAATTTA
1 AATTTTAATTTA
* *
68498205 AATTTTAATGTC
1 AATTTTAATTTA
68498217 AATTTTAATT
1 AATTTTAATT
68498227 ATTATACTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (12 bp):
AATTTTAATTTA
Found at i:68498391 original size:24 final size:22
Alignment explanation
Indices: 68498366--68498418 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
68498356 TTTAAAAATA
68498366 AAACATAATATAATATTTATCAT
1 AAACATAA-ATAATATTTATCAT
* *
68498389 AAAGATAAATAATATTTA-AAT
1 AAACATAAATAATATTTATCAT
68498410 AAA-ATAAAT
1 AAACATAAAT
68498419 TTAAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 6 0.21
21 5 0.18
22 10 0.36
23 7 0.25
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (22 bp):
AAACATAAATAATATTTATCAT
Found at i:68498420 original size:15 final size:16
Alignment explanation
Indices: 68498395--68498426 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
68498385 TCATAAAGAT
68498395 AAATAATATTTAAATA
1 AAATAATATTTAAATA
68498411 AAATAA-ATTTAAATA
1 AAATAATATTTAAATA
68498426 A
1 A
68498427 TATTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATAATATTTAAATA
Found at i:68498476 original size:30 final size:28
Alignment explanation
Indices: 68498394--68498476 Score: 80
Period size: 30 Copynumber: 3.0 Consensus size: 28
68498384 ATCATAAAGA
*
68498394 TAAATAATATTTA-AAT-AAAATAAATT
1 TAAATAATATTTATCATAAAAATAAATT
** * *
68498420 TAAATAATATTTATTTTAATATTAAATT
1 TAAATAATATTTATCATAAAAATAAATT
*
68498448 TAAATTTAGTATTTATCATAAAAATAAAT
1 TAAA--TAATATTTATCATAAAAATAAAT
68498477 AATATTATCA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 13 0.30
27 1 0.02
28 12 0.27
30 18 0.41
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (28 bp):
TAAATAATATTTATCATAAAAATAAATT
Found at i:68499793 original size:27 final size:27
Alignment explanation
Indices: 68499762--68499828 Score: 134
Period size: 27 Copynumber: 2.5 Consensus size: 27
68499752 ATGTTGGTGC
68499762 CAGAGGCGGCACCGGTGTTGCCTCTGA
1 CAGAGGCGGCACCGGTGTTGCCTCTGA
68499789 CAGAGGCGGCACCGGTGTTGCCTCTGA
1 CAGAGGCGGCACCGGTGTTGCCTCTGA
68499816 CAGAGGCGGCACC
1 CAGAGGCGGCACC
68499829 AGTTGTGTGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.16, C:0.31, G:0.37, T:0.15
Consensus pattern (27 bp):
CAGAGGCGGCACCGGTGTTGCCTCTGA
Found at i:68499966 original size:15 final size:15
Alignment explanation
Indices: 68499909--68499977 Score: 59
Period size: 16 Copynumber: 4.3 Consensus size: 15
68499899 ATTCAGCCGT
*
68499909 AAGGAGAAGAAAATAA
1 AAGGAGAAGAAAA-AG
*
68499925 AAGGA-AAGAAAGGAG
1 AAGGAGAAGAAA-AAG
68499940 AAGAGAAGGAAGAAAAAG
1 AAG-G-A-GAAGAAAAAG
68499958 AAGGAGAAGAAAAAAG
1 AAGGAGAAG-AAAAAG
68499974 AAGG
1 AAGG
68499978 TATAATTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
15 14 0.32
16 17 0.39
17 2 0.05
18 5 0.11
19 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.01
Consensus pattern (15 bp):
AAGGAGAAGAAAAAG
Found at i:68499976 original size:25 final size:25
Alignment explanation
Indices: 68499909--68499976 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
68499899 ATTCAGCCGT
*
68499909 AAGGAGAAGAAAATAA-AAGGAAAGA
1 AAGGAGAAGAAAA-AAGAAGAAAAGA
* *
68499934 AAGGAGAAG-AGAAGGAAGAAAA-A
1 AAGGAGAAGAAAAAAGAAGAAAAGA
68499957 GAAGGAGAAGAAAAAAGAAG
1 -AAGGAGAAGAAAAAAGAAG
68499977 GTATAATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 2 0.06
24 17 0.49
25 16 0.46
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.01
Consensus pattern (25 bp):
AAGGAGAAGAAAAAAGAAGAAAAGA
Found at i:68504056 original size:33 final size:32
Alignment explanation
Indices: 68503984--68504058 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
68503974 AGGAGTGGAG
*
68503984 TACTGCAGTGGATACGGGCCGGGGCAGTGCTA
1 TACTGCGGTGGATACGGGCCGGGGCAGTGCTA
* *
68504016 TAATGCGGTGGATATGGGCCGGGAG-AGGTGCTA
1 TACTGCGGTGGATACGGGCCGGG-GCA-GTGCTA
*
68504049 TGCTGCGGTG
1 TACTGCGGTG
68504059 TGTACGACCC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 21 0.58
33 15 0.42
ACGTcount: A:0.17, C:0.17, G:0.44, T:0.21
Consensus pattern (32 bp):
TACTGCGGTGGATACGGGCCGGGGCAGTGCTA
Found at i:68504196 original size:72 final size:72
Alignment explanation
Indices: 68504109--68504245 Score: 229
Period size: 72 Copynumber: 1.9 Consensus size: 72
68504099 CCCCGATGAG
*
68504109 CCGAGAAATTGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATGCGAT
1 CCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATGCGAT
68504174 GACGAGC
66 GACGAGC
* * * *
68504181 CCGAGAAATAGTCATTGCCTGCCAAATCCGGATGATAAGAAGTATCAGTCGAATGTGAATGCGAT
1 CCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATGCGAT
68504246 CGCTCGGACT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (72 bp):
CCGAGAAATAGTCATTGCCCGCAAAATCCGGATGATAAGAAGTATCAGCCGAAAGTGAATGCGAT
GACGAGC
Found at i:68506327 original size:22 final size:21
Alignment explanation
Indices: 68506299--68506340 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
68506289 TAGTACATAA
68506299 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
68506321 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
68506341 TAAATAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:68506651 original size:145 final size:146
Alignment explanation
Indices: 68506110--68507020 Score: 913
Period size: 145 Copynumber: 6.1 Consensus size: 146
68506100 ATAAGTAAAA
* * * *
68506110 TATTTTCGTATATTATTT-TTTATATTATTTTAG--CAAAATGTTTTAAATGTATTATTATGTAA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTA-T-T-TAA
* ** *
68506172 GTATTTTTTTATATTAATTTAATAAATAACACTGATTTTGACACTTT-TTCGTATTTTTTTCGTA
63 CTA-TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTTTTCGTA
*
68506236 TCTT-TTTTTT-AAATATAT
127 TATTATTTTTTAAAATATAT
* * * * * * *
68506254 TACTTTCGTATTATTTAATT-TTAAAACCCTTATTTTAGTACATAATGTTTTAAATATATTATTT
1 TATTTTCGTA-T-TTTATTTCTTTATA---TTATTTTAGTACATAATGATTCAAATGTATTATTT
* * ** *
68506318 AAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCATA-TTTTTTCG
61 AACTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTCG
68506381 TATATTATTTTTTAAAATATAT
125 TATATTATTTTTTAAAATATAT
* * * * *
68506403 TATTTTCCTATTTTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATT
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTAT-T-TA--
* * ** *
68506467 ATGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTT
62 A-CT-A----TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTT
*
68506532 TT-GTATCTTATTTTTTAAAATATAT
121 TTCGTATATTATTTTTTAAAATATAT
* * *
68506557 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATATATTATTTCAA-T
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTT-AACT
* * *
68506621 ATTTTTTATATTTTTTCAATAAATATCCCTGATTTAG-CACTTTATTCGTATTTTTTTCGTATAT
65 ATTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTTTTCGTATAT
68506685 TATTTTTTAAAATATAT
130 TATTTTTTAAAATATAT
* * * ** * *
68506702 T-TTTTCTTATTTTATTT-TTTATATTATTTTAGCA-AAAAAAATTCAAATGTATTAATTAACTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTTAACTA
* * *
68506764 TTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTT
66 TTT-TTTATA-T-----TTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGT-A----TTT
*
68506829 ATTTTCGTATATTATTTTTTAATATATAT
119 -TTTTCGTATATTATTTTTTAAAATATAT
* *
68506858 TATTTTCGT-TTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTTAACTA
68506922 TTTTTTATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCGTATTTTTTTCGTATAT
66 TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTCGTATAT
68506986 TATTTTTTAAAATATAT
130 TATTTTTTAAAATATAT
*
68507003 TATTTTGGTATTTTATTT
1 TATTTTCGTATTTTATTT
68507021 TAGCATAAAA
Statistics
Matches: 642, Mismatches: 79, Indels: 90
0.79 0.10 0.11
Matches are distributed among these distances:
141 2 0.00
142 21 0.03
143 21 0.03
144 72 0.11
145 90 0.14
146 23 0.04
147 59 0.09
148 18 0.03
149 51 0.08
150 14 0.02
151 54 0.08
152 1 0.00
153 1 0.00
154 82 0.13
155 44 0.07
156 37 0.06
157 28 0.04
158 24 0.04
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (146 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTTAACTA
TTTTTTATATTTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTTTTCGTATATT
ATTTTTTAAAATATAT
Found at i:68506683 original size:299 final size:295
Alignment explanation
Indices: 68506110--68507021 Score: 1217
Period size: 301 Copynumber: 3.1 Consensus size: 295
68506100 ATAAGTAAAA
* *
68506110 TATTTTCGTATATTATTTTTTATATTATTTTAGC--AAAATGTTTTAAATGTATTATTATGTAAG
1 TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTATGTAAG
* *
68506173 TATTTTTTTATATTAATTTAATAAATAACACTGATTTTGACAC-TTTTTCGTATTTTTTTCGTAT
66 TGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTTTCGTAT
* * *
68506237 CTT-TTTTTT-AAATATATTACTTTCGTATTATTTAATT-TTAAAACCCTTATTTTAGTACATAA
131 CTTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTCTTAATA---TTATTTTAGTACATAA
* * **
68506299 TGTTTTAAATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAACCCTGATTTTAGCACT
191 TGTTTCAAATATATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACT
*
68506364 TTATTCATA-TTTTTTCGTATATTATTTTTTAAAATATAT
256 TTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
*
68506403 TATTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATTA
1 TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATG---TA--T-TATTA
*
68506468 TGTAAGTGTTTTTTTATACTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTT
60 TGTAAGTGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTT
*
68506533 T-GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATA
125 TCGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTACATA
* *
68506597 ATGTTTCAAATATATTATTTCAA-TATTTTTTATATTTTTTCAATAAATATCCCTGA-TTTAGCA
190 ATGTTTCAAATATATTATTT-AAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCA
68506660 CTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
254 CTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
* ** *
68506702 T-TTTTCTTATTTTATTTTTTATATTATTTTAGCAAAAAA-AATTCAAATGTATTA--AT-TAAC
1 TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTATGTAAG
* * * *
68506762 TGTTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTT
66 TGTTTTTTTATATTAA------TTTAATAAATAACCCTGATTTTGACACTTTTTTCGT-A----T
* * *
68506827 TTATTTTCGTATATTATTTTTTAATATATATTATTTTCGT-TTTTATTTCTTTATATTATTTTAG
120 TT-TTTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAG
* *
68506891 TACATAATGCTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTT
184 TACATAATGTTTCAAATATATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTT
68506956 TAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
249 TAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATAT
*
68507003 TATTTTGGTATTTTATTTT
1 TATTTTCGTATTTTATTTT
68507022 AGCATAAAAT
Statistics
Matches: 554, Mismatches: 35, Indels: 51
0.87 0.05 0.08
Matches are distributed among these distances:
288 17 0.03
289 2 0.00
291 2 0.00
292 1 0.00
293 32 0.06
294 35 0.06
295 15 0.03
297 8 0.01
298 56 0.10
299 98 0.18
300 85 0.15
301 144 0.26
302 42 0.08
303 17 0.03
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (295 bp):
TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTATGTAAG
TGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTTTTCGTATTTTTTTCGTAT
CTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTACATAATGTTT
CAAATATATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATT
CGTATTTTTTTCGTATATTATTTTTTAAAATATAT
Found at i:68506861 original size:30 final size:28
Alignment explanation
Indices: 68506827--68506886 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 28
68506817 CGTAATTTTT
68506827 TTATTTTCGTATATTATTT-TTTAATATATA
1 TTATTTTCGT-TATTATTTCTTT-ATAT-TA
*
68506857 TTATTTTCGTTTTTATTTCTTTATATTA
1 TTATTTTCGTTATTATTTCTTTATATTA
68506885 TT
1 TT
68506887 TTAGTACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 4 0.14
29 11 0.39
30 13 0.46
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.68
Consensus pattern (28 bp):
TTATTTTCGTTATTATTTCTTTATATTA
Found at i:68507145 original size:30 final size:31
Alignment explanation
Indices: 68507109--68507167 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
68507099 CGTATTTTTT
68507109 TATTTTCAAATTTTATTTTTTTA-ATTATAC
1 TATTTTCAAATTTTATTTTTTTATATTATAC
*
68507139 TATTTTCATATTTTATTTTTTTATATTAT
1 TATTTTCAAATTTTATTTTTTTATATTAT
68507168 TTTAACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (31 bp):
TATTTTCAAATTTTATTTTTTTATATTATAC
Found at i:68507151 original size:131 final size:130
Alignment explanation
Indices: 68506901--68507153 Score: 280
Period size: 136 Copynumber: 1.9 Consensus size: 130
68506891 TACATAATGC
** * *
68506901 TTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTA
1 TTCAAATGTATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGACTTTAGCACCTTA
** * *
68506966 TTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTATTTTAGCATAAAA
66 TTCGTATTTTTTTCAAATATTATTTTTTAAAATATACTATTTT-GCA--TTATTTTAGCATAAAA
68507031 TCA
128 TCA
* * *
68507034 TTCAAATGTATTATTTAAGT-TTTTTTATATTAATTTAATAAGTAA-CCTGACTTTGGCACCTTG
1 TTCAAATGTATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGACTTTAGCACCTTA
* * *
68507097 TTCGTATTTTTTTATTTTCAAATTTTATTTTTTTAATTATACTATTTT-CA-TATTTTA
66 TTCGTA----TTT-TTTTCAAATATTATTTTTTAAAATATACTATTTTGCATTATTTTA
68507154 TTTTTTTATA
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
131 27 0.27
132 22 0.22
133 20 0.20
134 1 0.01
135 3 0.03
136 28 0.28
ACGTcount: A:0.29, C:0.08, G:0.07, T:0.56
Consensus pattern (130 bp):
TTCAAATGTATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGACTTTAGCACCTTA
TTCGTATTTTTTTCAAATATTATTTTTTAAAATATACTATTTTGCATTATTTTAGCATAAAATCA
Found at i:68507623 original size:14 final size:14
Alignment explanation
Indices: 68507604--68507666 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
68507594 AAAAAATTAC
68507604 CTTTTTCTTTCCTT
1 CTTTTTCTTTCCTT
* *
68507618 CTTTTTCCTTCCCT
1 CTTTTTCTTTCCTT
*
68507632 CTTCTTCTTCTCCTTCT
1 CTTTTTCTT-TCC-T-T
68507649 CTTTTTCTTT--TT
1 CTTTTTCTTTCCTT
68507661 CTTTTT
1 CTTTTT
68507667 TCTTCTCTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
12 7 0.17
13 1 0.03
14 19 0.47
15 3 0.08
16 1 0.03
17 9 0.22
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
CTTTTTCTTTCCTT
Found at i:68507637 original size:17 final size:18
Alignment explanation
Indices: 68507615--68507661 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
68507605 TTTTTCTTTC
68507615 CTTCTTTTTCCTTC-CCT
1 CTTCTTTTTCCTTCTCCT
*
68507632 CTTCTTCTTCTCCTTCTCTT
1 CTTCTT-TT-TCCTTCTCCT
*
68507652 TTTCTTTTTC
1 CTTCTTTTTC
68507662 TTTTTTCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 8 0.32
20 7 0.28
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTCTTTTTCCTTCTCCT
Found at i:68507724 original size:16 final size:17
Alignment explanation
Indices: 68507703--68507770 Score: 50
Period size: 19 Copynumber: 3.8 Consensus size: 17
68507693 TCCTCCTCTC
68507703 CTTCTT-TTTCTTTCTT
1 CTTCTTCTTTCTTTCTT
*
68507719 CTTCTTCTCTTCTTCCCTT
1 CTTCTTCT-TTCTT-TCTT
* *
68507738 CTTCCCTTCTTCCCTTCTT
1 CTT--CTTCTTTCTTTCTT
68507757 CTCTCTT-TTTCTTT
1 CT-TCTTCTTTCTTT
68507771 GCTGAAAATG
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
16 6 0.15
17 6 0.15
18 8 0.20
19 11 0.28
20 4 0.10
21 5 0.12
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (17 bp):
CTTCTTCTTTCTTTCTT
Found at i:68507731 original size:8 final size:8
Alignment explanation
Indices: 68507719--68507757 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
68507709 TTTCTTTCTT
*
68507719 CTTCTTCT
1 CTTCTTCC
68507727 CTTCTTCC
1 CTTCTTCC
68507735 CTTCTTCC
1 CTTCTTCC
68507743 CTTCTTCC
1 CTTCTTCC
68507751 CTTCTTC
1 CTTCTTC
68507758 TCTCTTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (8 bp):
CTTCTTCC
Found at i:68507901 original size:27 final size:27
Alignment explanation
Indices: 68507863--68507934 Score: 135
Period size: 27 Copynumber: 2.7 Consensus size: 27
68507853 CCAAAAGCAG
*
68507863 ACACCGGTGCCGCCTCTGCCAGAGGCA
1 ACACTGGTGCCGCCTCTGCCAGAGGCA
68507890 ACACTGGTGCCGCCTCTGCCAGAGGCA
1 ACACTGGTGCCGCCTCTGCCAGAGGCA
68507917 ACACTGGTGCCGCCTCTG
1 ACACTGGTGCCGCCTCTG
68507935 GCACCAACAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.17, C:0.39, G:0.29, T:0.15
Consensus pattern (27 bp):
ACACTGGTGCCGCCTCTGCCAGAGGCA
Found at i:68508098 original size:18 final size:18
Alignment explanation
Indices: 68508077--68508114 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
68508067 TTTTTTACTG
68508077 TATTATTTTCA-ATTTTTT
1 TATT-TTTTCATATTTTTT
*
68508095 TATTTTTTTATATTTTTT
1 TATTTTTTCATATTTTTT
68508113 TA
1 TA
68508115 GTAAAAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (18 bp):
TATTTTTTCATATTTTTT
Found at i:68508862 original size:76 final size:77
Alignment explanation
Indices: 68508774--68508917 Score: 254
Period size: 77 Copynumber: 1.9 Consensus size: 77
68508764 CTCAAATTAA
*
68508774 AAAAATTGCATCAATT-AATTTTTTAACTAATAAAATCTATCTTTGATCATTACTTTATTGATGT
1 AAAAATTACATCAATTAAATTTTTTAACTAATAAAATCTATCTTTGATCATTACTTTATTGATGT
68508838 GACTATTAATTT
66 GACTATTAATTT
* *
68508850 AAAAATTACATCAATTAAATTTTTTAACTAGTAAAATCTATCTTTGATCATTACTTTATTTATGT
1 AAAAATTACATCAATTAAATTTTTTAACTAATAAAATCTATCTTTGATCATTACTTTATTGATGT
68508915 GAC
66 GAC
68508918 CGTTAATGAA
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
76 15 0.23
77 49 0.77
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (77 bp):
AAAAATTACATCAATTAAATTTTTTAACTAATAAAATCTATCTTTGATCATTACTTTATTGATGT
GACTATTAATTT
Found at i:68511937 original size:32 final size:32
Alignment explanation
Indices: 68511883--68511943 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
68511873 CCAATAATCA
* * *
68511883 AAACCCAATACACAGAAGCCCAAACCCCTTAC
1 AAACCCAAAACACAAAAGCCCAAAACCCTTAC
* *
68511915 AAACCCAAAACCCAAAATCCCAAAACCCT
1 AAACCCAAAACACAAAAGCCCAAAACCCT
68511944 AATCAGCCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.48, C:0.41, G:0.03, T:0.08
Consensus pattern (32 bp):
AAACCCAAAACACAAAAGCCCAAAACCCTTAC
Found at i:68526037 original size:71 final size:70
Alignment explanation
Indices: 68525894--68526226 Score: 322
Period size: 67 Copynumber: 4.9 Consensus size: 70
68525884 TTTGGGTACT
* * * **
68525894 CTGAGGTATCTTTAATTCATGTTTTCAAAAATCAACTCATATT--GAGAAATGAGTTGAGCCTCA
1 CTGAGGTATTTTTAATTTATG-TTTCAAAAAT-TACTCATATTGCGAGAGGTGAGTTGAGCCTCA
68525957 GGTCACACG
64 GGT--CACG
**
68525966 CTGAGGTATTTTTAATTTATGTTTCAAAAAATTACTCATATTGCGAGAGGTGAGTCAAGCCTCAG
1 CTGAGGTATTTTTAATTTATGTTTC-AAAAATTACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
68526031 GTCACG
65 GTCACG
* *
68526037 CTGAGGTGTTTTTAA-TT-TGTTTTAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCA-
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATT-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
68526099 G-CACG
65 GTCACG
* * * *
68526104 TTGAGGTA-TTTTAATTT-TTTGTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 CTGAGGTATTTTTAATTTATGT-TTCAAAAAT-TACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
68526166 GGGCACG
64 GGTCACG
* *
68526173 CTG-GGTA--TTTAGTTTATGTTT--AAAATTGACTC--ATTGCGA-AGGTGAGTTAAGCCT
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATT-ACTCATATTGCGAGAGGTGAGTTGAGCCT
68526227 TTTAATTTTG
Statistics
Matches: 228, Mismatches: 22, Indels: 31
0.81 0.08 0.11
Matches are distributed among these distances:
63 14 0.06
64 7 0.03
66 15 0.07
67 58 0.25
68 17 0.07
69 40 0.18
70 2 0.01
71 31 0.14
72 25 0.11
73 19 0.08
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (70 bp):
CTGAGGTATTTTTAATTTATGTTTCAAAAATTACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
TCACG
Found at i:68526386 original size:55 final size:53
Alignment explanation
Indices: 68526318--68526456 Score: 219
Period size: 52 Copynumber: 2.6 Consensus size: 53
68526308 GTTTTTAATT
68526318 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATA-TTTTTCAAAAAA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT-AATTTATACTTTTTC--AAAA
* *
68526373 TCAACTCATATTGCGAGAGGTG-GTTGAACCTTTAATTTCTACTTTTTCAAAA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTATACTTTTTCAAAA
68526425 TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
68526457 CAGGTCACGC
Statistics
Matches: 79, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
52 26 0.33
53 15 0.19
54 16 0.20
55 22 0.28
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (53 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTATACTTTTTCAAAA
Found at i:68526617 original size:84 final size:79
Alignment explanation
Indices: 68526415--68526623 Score: 276
Period size: 84 Copynumber: 2.6 Consensus size: 79
68526405 TAATTTCTAC
* *
68526415 TTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCGAGGTATTTAAT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGGCACGCGAGGTATTTAAT
* *
68526479 TTCTGTTTTCATTAT
65 TTCTCTTTCCATTAT
*
68526494 TATGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGCACGCTGAGGTATTTT
1 T-T-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGCACGC-GAGGTA-TTT
*
68526559 CAATTTCTACTTTCCAATTCT
62 -AATTTCT-CTTTCC-ATTAT
*
68526580 TTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
68526624 TCAATTTATA
Statistics
Matches: 114, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 10 0.09
82 42 0.37
83 3 0.03
84 47 0.41
85 5 0.04
86 5 0.04
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (79 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGCACGCGAGGTATTTAATT
TCTCTTTCCATTAT
Found at i:68526639 original size:54 final size:53
Alignment explanation
Indices: 68526580--68526784 Score: 268
Period size: 54 Copynumber: 3.8 Consensus size: 53
68526570 TTCCAATTCT
*
68526580 TTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTCAATTTATA
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT-AATTTATA
* *
68526634 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCTGT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTAT-A
* * *
68526688 TTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CCTTTTAATTTTTG
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCC-TTTAATTTATA
* * * * *
68526742 TCTTTCAAAAATCAACCCATATGGTGAGAAGTGAGTTGAGCCT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
68526785 CGGTCATATG
Statistics
Matches: 135, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
53 8 0.06
54 117 0.87
55 10 0.07
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (53 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTATA
Found at i:68526776 original size:108 final size:108
Alignment explanation
Indices: 68526579--68526784 Score: 306
Period size: 108 Copynumber: 1.9 Consensus size: 108
68526569 TTTCCAATTC
* * *
68526579 TTTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTCAATTTATATTTTTCAAAA
1 TTTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATATCTTTCAAAA
* * *
68526644 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCTG
66 ATCAACCCATATGGCGAGAAGTGAGTTGAGCCTTTAATTTCTG
* * *
68526687 TTTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CCTTTTAATTTTTGTCTTTCAAA
1 TTTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTG-AGCCTTTCAATTTATATCTTTCAAA
*
68526751 AATCAACCCATATGGTGAGAAGTGAGTTGAGCCT
65 AATCAACCCATATGGCGAGAAGTGAGTTGAGCCT
68526785 CGGTCATATG
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 86 0.99
109 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (108 bp):
TTTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATATCTTTCAAAA
ATCAACCCATATGGCGAGAAGTGAGTTGAGCCTTTAATTTCTG
Found at i:68527126 original size:45 final size:45
Alignment explanation
Indices: 68527019--68527114 Score: 174
Period size: 45 Copynumber: 2.1 Consensus size: 45
68527009 GACTTGGTCT
*
68527019 CCCTGAAGCTACAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
1 CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
*
68527064 CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCT
1 CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
68527109 CCCTGA
1 CCCTGA
68527115 GGTCGCAGTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (45 bp):
CCCTGAAGCTGCAGTGGAGCCGGTCAAAAGTTGCAAGTCTTGTCC
Found at i:68536241 original size:29 final size:29
Alignment explanation
Indices: 68536202--68536289 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
68536192 CAAAGATAAC
*
68536202 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
68536231 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
68536260 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
68536290 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:68536260 original size:15 final size:15
Alignment explanation
Indices: 68536202--68536280 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
68536192 CAAAGATAAC
*
68536202 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
68536216 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
68536231 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
68536245 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
68536260 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
68536275 AAGAAA
1 AAGAAA
68536281 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:68536289 original size:15 final size:15
Alignment explanation
Indices: 68536213--68536289 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
68536203 AGAAAACCGA
68536213 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
68536228 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
68536242 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
68536256 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
68536272 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
68536287 ATA
1 ATA
68536290 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:68544223 original size:40 final size:39
Alignment explanation
Indices: 68544178--68544305 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 39
68544168 CGGAATATAA
*
68544178 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAATTGCCTTCGGGTCTTAGC
* ** *
68544218 CCGGATAGAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAATTGCCTTCGGGTCTTAGC
* * * *
68544258 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA--TCACTGCACAATTGCCTTCGGGTCTTAGC
68544298 CCGGATAT
1 CCGGATAT
68544306 CATTCAATTT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAATTGCCTTCGGGTCTTAGC
Found at i:68551338 original size:40 final size:39
Alignment explanation
Indices: 68551293--68551500 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
68551283 CGGAATACAA
*
68551293 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
68551333 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
68551373 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68551413 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
68551453 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
68551493 CCGGATAT
1 CCGGATAT
68551501 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:68551433 original size:80 final size:81
Alignment explanation
Indices: 68551293--68551498 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
68551283 CGGAATACAA
* * *
68551293 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
68551357 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
68551373 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
68551436 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
68551453 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
68551499 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:68557798 original size:27 final size:27
Alignment explanation
Indices: 68557768--68557847 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
68557758 CCCTAAAATA
*
68557768 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
68557795 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
68557822 GATAAAATGACCGCAATACCCTTGTA
1 GGTAAAATGACCGTAATACCCCTGTA
68557848 TAGTACAATG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:68558045 original size:27 final size:27
Alignment explanation
Indices: 68557996--68558074 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
68557986 TGGAGGAAGT
* * *
68557996 ACTG-TACTGGTGACTATGTCACATTC
1 ACTGTTACTGGTGGCTTTGCCACATTC
68558022 ACTGTTACTGGTGGCTTTGCCACATTC
1 ACTGTTACTGGTGGCTTTGCCACATTC
*
68558049 ACTGTTATTGGTGGCTTTGCCACATT
1 ACTGTTACTGGTGGCTTTGCCACATT
68558075 ATTATTACTG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
26 4 0.08
27 44 0.92
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
ACTGTTACTGGTGGCTTTGCCACATTC
Found at i:68558250 original size:28 final size:28
Alignment explanation
Indices: 68558210--68558270 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
68558200 ATTACACCAT
* * *
68558210 ACTGATACTGTATTGGCCTTAGGCCCAG
1 ACTGTTACTGTATAGGCCTAAGGCCCAG
*
68558238 ACTGTTACTGTATAGGGCTAAGGCCCAG
1 ACTGTTACTGTATAGGCCTAAGGCCCAG
68558266 ACTGT
1 ACTGT
68558271 AATGAACTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (28 bp):
ACTGTTACTGTATAGGCCTAAGGCCCAG
Found at i:68562237 original size:42 final size:43
Alignment explanation
Indices: 68562176--68562285 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
68562166 AATTTGAGAT
*
68562176 TTACATGTAAGACCATGTCTGGGACA-TCGACATCG-TATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGT-GACATCGATATTTGA
*** * *
68562218 TTTTGTGTAAGACCCTGTCTGAGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGTGACATCGATATTTGA
68562261 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
68562286 GTTGGAATTG
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 27 0.49
43 27 0.49
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGACAGTGACATCGATATTTGA
Found at i:68565333 original size:21 final size:22
Alignment explanation
Indices: 68565284--68565337 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
68565274 CATTCAAAAT
** *
68565284 AAAATAATATATAAAACTCTTT
1 AAAATAATATATAAAACAATTC
68565306 AAGAATAATATAT-AAACAATTC
1 AA-AATAATATATAAAACAATTC
68565328 AAAAT-ATATA
1 AAAATAATATA
68565338 ATGTGCGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 5 0.18
21 3 0.11
22 10 0.36
23 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATAATATATAAAACAATTC
Found at i:68565421 original size:52 final size:52
Alignment explanation
Indices: 68565364--68565485 Score: 137
Period size: 52 Copynumber: 2.4 Consensus size: 52
68565354 TAAAAAACAT
* * *
68565364 ATATAAGAAAAATAATAATGAAAATAATATTAG-TATATAAATAG-AAATAAAA
1 ATAT-AGATAAATAATAAT-AAAATAATAGTAGAAATATAAATAGAAAATAAAA
*
68565416 ATATA-ATAAATAGA-AATATAATAATAGTAGAAATATAAATAGATAAATAAAA
1 ATATAGATAAATA-ATAATAAAATAATAGTAGAAATATAAATAGA-AAATAAAA
68565468 AT-TAGATAAATAATAATA
1 ATATAGATAAATAATAATA
68565486 GTATTAGAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
49 11 0.18
50 19 0.32
51 5 0.08
52 25 0.42
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (52 bp):
ATATAGATAAATAATAATAAAATAATAGTAGAAATATAAATAGAAAATAAAA
Found at i:68565432 original size:15 final size:15
Alignment explanation
Indices: 68565408--68565453 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
68565398 ATATAAATAG
*
68565408 AAATAAAAATATAAT
1 AAATAGAAATATAAT
68565423 AAATAGAAATATAAT
1 AAATAGAAATATAAT
68565438 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
68565454 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:68565454 original size:29 final size:28
Alignment explanation
Indices: 68565421--68565528 Score: 85
Period size: 29 Copynumber: 3.8 Consensus size: 28
68565411 TAAAAATATA
*
68565421 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAATATAATAATAG-ATAAAT
*
68565450 ATAAATAGATAA-ATAAAAATTAGATAAAT
1 ATAAATAGA-AATATAATAA-TAGATAAAT
* * * * *
68565479 A-ATAATAGTATTAGAATAAGAAAATAAAT
1 ATA-AATAGAAATATAATAA-TAGATAAAT
*
68565508 ATAAATAGAAACATAATAATA
1 ATAAATAGAAATATAATAATA
68565529 ATAGCCATAA
Statistics
Matches: 60, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
28 3 0.05
29 51 0.85
30 6 0.10
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.27
Consensus pattern (28 bp):
ATAAATAGAAATATAATAATAGATAAAT
Found at i:68565456 original size:44 final size:44
Alignment explanation
Indices: 68565402--68565488 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
68565392 ATTAGTATAT
68565402 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
68565446 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
68565489 TTAGAATAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:68565473 original size:15 final size:14
Alignment explanation
Indices: 68565400--68565516 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
68565390 ATATTAGTAT
*
68565400 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
68565413 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
68565429 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
68565443 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
68565458 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
68565473 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
68565487 TATTAGAATAAGAA-A-
1 -A-TA-AATAAAAATAG
*
68565502 ATAAATATAAATAG
1 ATAAATAAAAATAG
68565516 A
1 A
68565517 AACATAATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 6 0.07
14 22 0.27
15 35 0.43
16 6 0.07
17 7 0.09
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:68566484 original size:44 final size:43
Alignment explanation
Indices: 68566422--68566999 Score: 224
Period size: 44 Copynumber: 13.1 Consensus size: 43
68566412 AGGAATTTTC
* * * *
68566422 ATTTCAATCTACTCCACTATTGCTTAGGGAGATATGATCTGTA
1 ATTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
* * *
68566465 ATTTCAAGCCTGCTCCACTATTGCTCAGGGAGATAAGGATCACCGT-
1 ATTTCAA-CCTGCTCCACTACTGCTTAGGGAGATAA-GAT--CTGTA
* * * *
68566511 -CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTA
1 ATTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
* * * * *
68566553 ATTTCCAGCCTGTTTCC-CTACTGCTTAGGGGGATAAG-GCT-CA
1 ATTT-CAACCTG-CTCCACTACTGCTTAGGGAGATAAGATCTGTA
*
68566595 CCATCTTCGATCC-GCTCCACTACTGCTTAGGGAGATAAGATCTGTA
1 --AT-TTC-AACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
* * *
68566641 ATTTCCAACCTGTTTCC-CTACTGCTTAGGGGGATAAGGCTCACTGT-
1 ATTT-CAACCTG-CTCCACTACTGCTTAGGGAGATAA-GAT--CTGTA
* * * * *
68566687 CTTT-GATCAGCTTCACTACTGCTTAGGGAGATAAGATCTGTA
1 ATTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
* * * * *
68566729 ATTTCCAGCCTGTTTCC-CTACTGCTTAGGGGGATAAGGCTCACCGT-
1 ATTT-CAACCTG-CTCCACTACTGCTTAGGGAGATAA-GAT--CTGTA
* * * ** *
68566775 -CTTCGATCTGCTCCACTACTTTTTAGGGAGATAAGATCTATA
1 ATTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
* * * * *
68566817 ATTTTTAGCCTGTTTCC-CTACTGCTTAGGG-GTATAAG-GCT-CA
1 A-TTTCAACCTG-CTCCACTACTGCTTAGGGAG-ATAAGATCTGTA
* * *
68566859 CAGTTTTCAACCTACTCCACTACTGCTTAAGGAGATAGGGTGATCTGTCA
1 -A--TTTCAACCTGCTCCACTACTGCTTAGGGAGATA---AGATCTGT-A
* * ** * *
68566909 TTTTCAGCCTATTTTCC-CTACTGCTTAGGG-GATAAGGCTCATCT-
1 ATTTCAACC--TGCTCCACTACTGCTTAGGGAGATAA-GATC-TGTA
* * *
68566953 -TCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTA
1 AT-TTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
68566996 ATTT
1 ATTT
68567000 TCAGTCTGCT
Statistics
Matches: 390, Mismatches: 91, Indels: 108
0.66 0.15 0.18
Matches are distributed among these distances:
41 9 0.02
42 11 0.03
43 56 0.14
44 232 0.59
45 35 0.09
46 6 0.02
47 22 0.06
48 14 0.04
49 4 0.01
50 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (43 bp):
ATTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
Found at i:68566588 original size:88 final size:88
Alignment explanation
Indices: 68566428--68566999 Score: 761
Period size: 88 Copynumber: 6.5 Consensus size: 88
68566418 TTTCATTTCA
* * * * * * *
68566428 ATCTACTCCACTATTGCTTAGGGAGATATGATCTGTAATTTCAAGCCTG-CTCCACTATTGCTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCC-CTACTGCTTA
* *
68566492 GGGAGATAAGGATCACCGTCTTCG
65 GGGGGATAAGGCTCACCGTCTTCG
*
68566516 ATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAG
*
68566581 GGGGATAAGGCTCACCATCTTCG
66 GGGGATAAGGCTCACCGTCTTCG
* *
68566604 ATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTGTTTCCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAG
* *
68566669 GGGGATAAGGCTCACTGTCTTTG
66 GGGGATAAGGCTCACCGTCTTCG
* *
68566692 ATCAGCTTCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAG
68566757 GGGGATAAGGCTCACCGTCTTCG
66 GGGGATAAGGCTCACCGTCTTCG
** * **
68566780 ATCTGCTCCACTACTTTTTAGGGAGATAAGATCTATAATTTTTAGCCTGTTTCCCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAG
* * * *
68566845 GGGTATAAGGCTCACAGTTTTCA
66 GGGGATAAGGCTCACCGTCTTCG
* * * * * * *
68566868 ACCTACTCCACTACTGCTTAAGGAGATAGGGTGATCTGTCATTTTCAGCCTATTTTCCCTACTGC
1 ATCTGCTCCACTACTGCTTAGGGAGATA---AGATCTGTAATTTCCAGCCT-GTTTCCCTACTGC
* *
68566933 TTA-GGGGATAAGGCTCATCTTCTTCG
62 TTAGGGGGATAAGGCTCACCGTCTTCG
*
68566959 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT
68567000 TCAGTCTGCT
Statistics
Matches: 426, Mismatches: 53, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
88 351 0.82
89 3 0.01
91 57 0.13
92 15 0.04
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (88 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAG
GGGGATAAGGCTCACCGTCTTCG
Found at i:68567164 original size:176 final size:176
Alignment explanation
Indices: 68566955--68567476 Score: 708
Period size: 176 Copynumber: 2.9 Consensus size: 176
68566945 GCTCATCTTC
*
68566955 TTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTAC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTAC
** * * * *
68567020 C-CTAGGAAGATAAGATTTGTATCTTCAGCCAACTCTCTTACTACATCAGAGAGATAAGGTTGGT
66 CTC-AGGAAGATAAGACCTGTATCTTCA-ACAACTCTCTTGCTACCTCAGAGAGATAAGGATGGT
*
68567084 GGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCA-T
129 GGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATT
* *
68567131 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGTCTACTTCCTTGCTAC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTAC
** *
68567196 CTCAGGAAGATAAGACCTGTATCTTCAATCTCCTCTCTTGCTACCTTAGAGAGATAAGGATGGTG
66 CTCAGGAAGATAAGACCTGTATCTTCAA-CAACTCTCTTGCTACCTCAGAGAGATAAGGATGGTG
* * *
68567261 GCTAAAATCTACTCCATAGTCGATACATGGAGATAAGGCTCGCCATT
130 GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATT
* * * * * * *
68567308 TTAGATCTACTCCA-TAGCTGATACATGGAGATAAGATCTGTAATTTTTAGTTTGCTTCCTTGCT
1 TTCGATCTGCTCCACTA-CTGCT-TAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCT
* * *
68567372 ACCTCAGGAAGATAAGACCTGTATCTTCAACATGCTCTCTTGCTACCTCAGAGAGATAAAGCTGG
64 ACCTCAGGAAGATAAGACCTGTATCTTCAACA-ACTCTCTTGCTACCTCAGAGAGATAAGGATGG
* * *
68567437 TGGCTAAAATCTGCTTCATAGCAGATACATGAAGATAAGA
128 TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
68567477 TCTGTAATTT
Statistics
Matches: 304, Mismatches: 36, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
176 158 0.52
177 19 0.06
178 127 0.42
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (176 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTAC
CTCAGGAAGATAAGACCTGTATCTTCAACAACTCTCTTGCTACCTCAGAGAGATAAGGATGGTGG
CTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATT
Found at i:68567629 original size:133 final size:133
Alignment explanation
Indices: 68567312--68567609 Score: 470
Period size: 133 Copynumber: 2.2 Consensus size: 133
68567302 GCCATTTTAG
* * *
68567312 ATCTACTCCATAGCTGATACATGGAGATAAGATCTGTAATTTTTAGTTTGCTTCCTTGCTACCTC
1 ATCTGCTCCATAGCAGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* * *
68567377 AGGAAGATAAGACCTGTATCTTCAACATGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCT
66 AGGAAGATAAGACCTGTATCTTCAACATACTCTCTTGCTACATCAGAGAGATAAAGCTAGTGGCT
68567442 AAA
131 AAA
* *
68567445 ATCTGCTTCATAGCAGATACATGAAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
1 ATCTGCTCCATAGCAGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
* * * * *
68567510 GGGAAGATAATACTTGTATCTTCAACCTACTCTCTTGCTACATCAGAGAGGTAAAGCTAGTGGCT
66 AGGAAGATAAGACCTGTATCTTCAACATACTCTCTTGCTACATCAGAGAGATAAAGCTAGTGGCT
68567575 AAA
131 AAA
*
68567578 ATCTGCTCCATAGCCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCAGATACATGGAGATAAGA
68567610 ATCGCCATCT
Statistics
Matches: 149, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 149 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (133 bp):
ATCTGCTCCATAGCAGATACATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
AGGAAGATAAGACCTGTATCTTCAACATACTCTCTTGCTACATCAGAGAGATAAAGCTAGTGGCT
AAA
Found at i:68567686 original size:177 final size:176
Alignment explanation
Indices: 68567469--68568141 Score: 961
Period size: 177 Copynumber: 3.8 Consensus size: 176
68567459 AGATACATGA
* * *
68567469 AGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTCGGGAAGATAATACTTGTATCTTCA
1 AGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
* * * *
68567534 ACCTACTCTCTTGCTACATCAGAGAGGTAAAGCTAGTGGCTAAAATCTGCTCCATAGCCGATACA
66 ACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCCGATACA
* ** *
68567599 TGGAGATAAGAATCGCCATCTTTAATCTGCTCTGCTACTGCTTAGGG
131 TGGAGATAAGACTCGCCAT-TTTAATCTGCTCCACTACTGCTTAAGG
* *
68567646 AGATAAGATCTGCAATTTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTTGTATCTTCA
1 AGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
** * *
68567711 ACCTGCTCTCTTGCTATGTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGCCGATACA
66 ACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCCGATACA
* *
68567776 TGGGGATAAGACTCGCCATTTTTGATCTGCTCCACTACTGCTTAAGG
131 TGGAGATAAGACTCGCCA-TTTTAATCTGCTCCACTACTGCTTAAGG
* *
68567823 AGATAAGATCTGTAATTTTCAGTCTACTTTCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
1 AGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
* * * * * *
68567888 ACCTTCTCTCTTGCTACCTTAGAGAGATAAGGTTGGTGGCTAAAATTTGCTCCATAGTCGATACA
66 ACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCCGATACA
* * * * *
68567953 TGGAGATAAGACTCGCCATTTTAGATCTACTCCATTGCTG-ATACATGA
131 TGGAGATAAGACTCGCCATTTTA-ATCTGCTCCACTACTGCTTA-A-GG
* * *
68568001 AGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAATACCTGTATCTTCA
1 AGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
* *
68568066 ACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCCAAAATCTGCTCCATAGCCGGTACA
66 ACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCCGATACA
68568131 TGGAGATAAGA
131 TGGAGATAAGA
68568142 TCTGTAATTT
Statistics
Matches: 442, Mismatches: 50, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
176 6 0.01
177 306 0.69
178 130 0.29
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (176 bp):
AGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTTCA
ACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTCCATAGCCGATACA
TGGAGATAAGACTCGCCATTTTAATCTGCTCCACTACTGCTTAAGG
Found at i:68567960 original size:665 final size:665
Alignment explanation
Indices: 68566959--68568507 Score: 2580
Period size: 665 Copynumber: 2.3 Consensus size: 665
68566949 ATCTTCTTCG
* * *
68566959 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAGTCTGCTTCCTTGCTACC-CT
1 ATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTC-
* ** *
68567023 AGGAAGATAAGATTTGTATCTTCAGCCAACTCTCTTACTACATCAGAGAGATAAGGTTGGTGGCT
65 AGGAAGATAAGACTTGTATCTTCAGCCTGCTCTCTTGCTACATCAGAGAGATAAGGTTGGTGGCT
*
68567088 AAAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCA-TTTCGATCTGCTCCACTACTGC
130 AAAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCACTACTGC
*
68567152 TTAGGGAGATAAGATCTATAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACCTGTA
195 TTAGGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACCTGTA
*
68567217 TCTTCAATCTCCTCTCTTGCTACCTTAGAGAGATAAGGATGGTGGCTAAAATCTACTCCATAGTC
260 TCTTCAACCTCCTCTCTTGCTACCTTAGAGAGATAAGGATGGTGGCTAAAATCTACTCCATAGTC
* *
68567282 GATACATGGAGATAAGGCTCGCCATTTTAGATCTACTCCATAGCTGATACATGGAGATAAGATCT
325 GATACATGGAGATAAGACTCGCCATTTTAGATCTACTCCATAGCTGATACATGAAGATAAGATCT
*
68567347 GTAATTTTTAGTTTGCTTCCTTGCTACCTCAGGAAGATAAGACCTGTATCTTCAACATGCTCTCT
390 GTAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACCTGTATCTTCAACATGCTCTCT
* *
68567412 TGCTACCTCAGAGAGATAAAGCTGGTGGCTAAAATCTGCTTCATAGCAGATACATGAAGATAAGA
455 TGCTACCTCAGAGAGATAAAGCTGGTGGCCAAAATCTGCTCCATAGCAGATACATGAAGATAAGA
* * * *
68567477 TCTGTAATTTTTAGTCTGCTTCCTTGCTACCTCGGGAAGATAATACTTGTATCTTCAACCTACTC
520 TCTGTAATTTTCAGTCTGCTTACTTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCTACTC
* *
68567542 TCTTGCTACATCAGAGAGGTAAAGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATA
585 TCTTGCTACATCAGAGAGATAAAGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATA
*
68567607 AGAATCGCCATCTTTA
650 AGAATCACCATCTTTA
* *
68567623 ATCTGCTCTGCTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTACTACCTCA
1 ATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCA
* ** *
68567688 GGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTATGTCAGAGAGATAAGGCTGGTGGCTA
66 GGAAGATAAGACTTGTATCTTCAGCCTGCTCTCTTGCTACATCAGAGAGATAAGGTTGGTGGCTA
*
68567753 AAATCTGCTCCATTGCCGATACATGGGGATAAGACTCGCCATTTTTGATCTGCTCCACTACTGCT
131 AAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCACTACTGCT
* * *
68567818 TAAGGAGATAAGATCTGTAATTTTCAGTCTACTTTCTTGCTACCTCAGGAAGATAAGACTTGTAT
196 TAGGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACCTGTAT
* * * *
68567883 CTTCAACCTTCTCTCTTGCTACCTTAGAGAGATAAGGTTGGTGGCTAAAATTTGCTCCATAGTCG
261 CTTCAACCTCCTCTCTTGCTACCTTAGAGAGATAAGGATGGTGGCTAAAATCTACTCCATAGTCG
*
68567948 ATACATGGAGATAAGACTCGCCATTTTAGATCTACTCCATTGCTGATACATGAAGATAAGATCTG
326 ATACATGGAGATAAGACTCGCCATTTTAGATCTACTCCATAGCTGATACATGAAGATAAGATCTG
* *
68568013 TAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAATACCTGTATCTTCAACCTGCTCTCTT
391 TAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACCTGTATCTTCAACATGCTCTCTT
* * *
68568078 GCTACCTCAGAGAGATAAAGCTGGTGGCCAAAATCTGCTCCATAGCCGGTACATGGAGATAAGAT
456 GCTACCTCAGAGAGATAAAGCTGGTGGCCAAAATCTGCTCCATAGCAGATACATGAAGATAAGAT
*
68568143 CTGTAATTTTCAGTCTGCTTACTTGCTACCTTAGGAAGATAAGACTTGTATCTTCAACCTACTCT
521 CTGTAATTTTCAGTCTGCTTACTTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCTACTCT
* * * *
68568208 CTTGCTACATCAGAGATATAAGGCTGGTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAA
586 CTTGCTACATCAGAGAGATAAAGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAA
*
68568273 GAATCACCATCTTTG
651 GAATCACCATCTTTA
* *
68568288 ATCTGCTCCGCTACTGCTTAGGGAGATAAGATTTGCAATTTTCAATCTGCTTCCTTGCTACCTCA
1 ATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCA
68568353 GGAAGATAAGACTTGTATCTTCAGCCTGCTCTCTTGCTACATCAGAGAGATAAGGTTGGTGGCTA
66 GGAAGATAAGACTTGTATCTTCAGCCTGCTCTCTTGCTACATCAGAGAGATAAGGTTGGTGGCTA
* * * * *
68568418 AATTCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCTACTACTTCT
131 AAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCACTACTGCT
68568483 TAGGGAGATAAGATCTGTAATTTTC
196 TAGGGAGATAAGATCTGTAATTTTC
68568508 CGATGTCGTT
Statistics
Matches: 820, Mismatches: 63, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
664 155 0.19
665 665 0.81
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (665 bp):
ATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTTGTATCTTCAGCCTGCTCTCTTGCTACATCAGAGAGATAAGGTTGGTGGCTA
AAATCTGCTCCATTGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTCCACTACTGCT
TAGGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACCTGTAT
CTTCAACCTCCTCTCTTGCTACCTTAGAGAGATAAGGATGGTGGCTAAAATCTACTCCATAGTCG
ATACATGGAGATAAGACTCGCCATTTTAGATCTACTCCATAGCTGATACATGAAGATAAGATCTG
TAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACCTGTATCTTCAACATGCTCTCTT
GCTACCTCAGAGAGATAAAGCTGGTGGCCAAAATCTGCTCCATAGCAGATACATGAAGATAAGAT
CTGTAATTTTCAGTCTGCTTACTTGCTACCTCAGGAAGATAAGACTTGTATCTTCAACCTACTCT
CTTGCTACATCAGAGAGATAAAGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAA
GAATCACCATCTTTA
Found at i:68568139 original size:133 final size:133
Alignment explanation
Indices: 68567977--68568274 Score: 452
Period size: 133 Copynumber: 2.2 Consensus size: 133
68567967 GCCATTTTAG
* * * * *
68567977 ATCTACTCCATTGCTGATACATGAAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTACTTGCTACCTC
* * *
68568042 AGGAAGATAATACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCC
66 AGGAAGATAAGACCTGTATCTTCAACCTACTCTCTTGCTACATCAGAGAGATAAAGCTGGTGGCC
68568107 AAA
131 AAA
* * *
68568110 ATCTGCTCCATAGCCGGTACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTACTTGCTACCTT
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTACTTGCTACCTC
* * * *
68568175 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACATCAGAGATATAAGGCTGGTGGCT
66 AGGAAGATAAGACCTGTATCTTCAACCTACTCTCTTGCTACATCAGAGAGATAAAGCTGGTGGCC
68568240 AAA
131 AAA
*
68568243 ATCTACTCTATAGCCGATACATGGAGATAAGA
1 ATCTACTCCATAGCCGATACATGGAGATAAGA
68568275 ATCACCATCT
Statistics
Matches: 147, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
133 147 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (133 bp):
ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTACTTGCTACCTC
AGGAAGATAAGACCTGTATCTTCAACCTACTCTCTTGCTACATCAGAGAGATAAAGCTGGTGGCC
AAA
Found at i:68568330 original size:177 final size:177
Alignment explanation
Indices: 68568132--68568507 Score: 599
Period size: 177 Copynumber: 2.1 Consensus size: 177
68568122 GCCGGTACAT
* *
68568132 GGAGATAAGATCTGTAATTTTCAGTCTGCTTACTTGCTACCTTAGGAAGATAAGACTTGTATCTT
1 GGAGATAAGATCTGTAATTTTCAATCTGCTTACTTGCTACCTCAGGAAGATAAGACTTGTATCTT
* *
68568197 CAACCTACTCTCTTGCTACATCAGAGATATAAGGCTGGTGGCTAAAATCTACTCTATAGCCGATA
66 CAACCTACTCTCTTGCTACATCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATA
*
68568262 CATGGAGATAAGAATCACCATCTTTGATCTGCTCCGCTACTGCTTAG
131 CATGGAGATAAGAATCACCATCTTTGATCTGCTCCACTACTGCTTAG
* * *
68568309 GGAGATAAGATTTGCAATTTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGTATCTT
1 GGAGATAAGATCTGTAATTTTCAATCTGCTTACTTGCTACCTCAGGAAGATAAGACTTGTATCTT
* * * * *
68568374 CAGCCTGCTCTCTTGCTACATCAGAGAGATAAGGTTGGTGGCTAAATTCTGCTCCATAGCCGATA
66 CAACCTACTCTCTTGCTACATCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATA
* * * *
68568439 CATGGAGATAAGACTCGCCATCTTTGATCTGCTCTACTACTTCTTAG
131 CATGGAGATAAGAATCACCATCTTTGATCTGCTCCACTACTGCTTAG
68568486 GGAGATAAGATCTGTAATTTTC
1 GGAGATAAGATCTGTAATTTTC
68568508 CGATGTCGTT
Statistics
Matches: 180, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
177 180 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (177 bp):
GGAGATAAGATCTGTAATTTTCAATCTGCTTACTTGCTACCTCAGGAAGATAAGACTTGTATCTT
CAACCTACTCTCTTGCTACATCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATA
CATGGAGATAAGAATCACCATCTTTGATCTGCTCCACTACTGCTTAG
Found at i:68568362 original size:133 final size:133
Alignment explanation
Indices: 68567977--68568362 Score: 390
Period size: 133 Copynumber: 2.9 Consensus size: 133
68567967 GCCATTTTAG
* * * ** * * * *
68567977 ATCTACTCCATTGCTGATACATGAAGATAAGATCTGTAATTTTTAGTCTGCTTCCTTGCTACCTC
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTACAATTTTCAGTCTGCTTACTCGCTACCTT
* * * *
68568042 AGGAAGATAATACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTGGTGGCC
66 AGGAAGATAAGACTTGAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCC
68568107 AAA
131 AAA
* * ** *
68568110 ATCTGCTCCATAGCCGGTACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTACTTGCTACCTT
1 ATCTACTCCATAGCCGATACATGGAGATAAGATCTACAATTTTCAGTCTGCTTACTCGCTACCTT
* * * * *
68568175 AGGAAGATAAGACTTGTATCTTCAACCTACTCTCTTGCTACATCAGAGATATAAGGCTGGTGGCT
66 AGGAAGATAAGACTTGAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCC
68568240 AAA
131 AAA
* * *
68568243 ATCTACTCTATAGCCGATACATGGAGATAAGAATC-ACCATCTTTGA-TCTGC-T-C-CGCTACT
1 ATCTACTCCATAGCCGATACATGGAGATAAG-ATCTACAAT-TTTCAGTCTGCTTACTCGCTAC-
* * * *
68568303 GCTTAGGGAGATAAGATTTGCAATTTTCAATCTGCT-TCCTTGCTACCTCAG-GAAGATAAG
63 -CTTAGGAAGATAAGACTTG-AATCTTCAACCTGCTCT-CTTGCTACCTCAGAG-AGATAAG
68568363 ACTTGTATCT
Statistics
Matches: 215, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
130 5 0.02
131 1 0.00
132 20 0.09
133 182 0.85
134 7 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (133 bp):
ATCTACTCCATAGCCGATACATGGAGATAAGATCTACAATTTTCAGTCTGCTTACTCGCTACCTT
AGGAAGATAAGACTTGAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCC
AAA
Found at i:68577730 original size:17 final size:18
Alignment explanation
Indices: 68577693--68577730 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
68577683 CACTTTTTTT
68577693 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
68577712 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
68577729 TT
1 TT
68577731 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:68584367 original size:28 final size:27
Alignment explanation
Indices: 68584304--68584373 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
68584294 ATAGTGAGTC
68584304 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
68584331 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
68584359 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68584374 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:68592196 original size:28 final size:27
Alignment explanation
Indices: 68592133--68592202 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
68592123 ATAGTGAGTC
68592133 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
68592160 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
68592188 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68592203 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:68610722 original size:93 final size:93
Alignment explanation
Indices: 68610609--68610778 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
68610599 CCCCTAAGTG
*
68610609 AACTCAGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCAGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68610673 TGAGTTCGGATGCCTAGTTACATTTCACA
65 CGAGTTCGGATGCCTAGTTACATTTCACA
* *
68610702 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
68610767 GAGTTCGGATGC
66 GAGTTCGGATGC
68610779 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Found at i:68610774 original size:46 final size:47
Alignment explanation
Indices: 68610603--68610775 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 47
68610593 AACCCGCCCC
* * *
68610603 TAAGTGAACTCAGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* * *
68610649 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACATTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCA-TCCA
*
68610700 -CA---AACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
68610742 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68610776 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 1 0.01
46 56 0.53
47 29 0.28
48 1 0.01
49 1 0.01
50 3 0.03
51 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:68612825 original size:28 final size:28
Alignment explanation
Indices: 68612789--68612857 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
68612779 GATGTCTCAG
*
68612789 ACACTAAGTGCCATACTCCATATCTCGC
1 ACACTAAGTGCCATACTCAATATCTCGC
* * * *
68612817 ACACCAAGTGCCATTCTCAATGTTTCGC
1 ACACTAAGTGCCATACTCAATATCTCGC
68612845 ACACTAAGTGCCA
1 ACACTAAGTGCCA
68612858 CATATATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.33, G:0.13, T:0.25
Consensus pattern (28 bp):
ACACTAAGTGCCATACTCAATATCTCGC
Found at i:68612958 original size:40 final size:40
Alignment explanation
Indices: 68612872--68612947 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
68612862 TATATATATA
* *
68612872 TAGCCGAAGCTATCTCAAATCGCAAACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCAAACCACAAACCAAGTGCCACATT
* * *
68612912 TAGCCGAAGCTATTTCAAACCACACACTAAGTGCCA
1 TAGCCGAAGCTATCTCAAACCACAAACCAAGTGCCA
68612948 TTCTTAGCCG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.30, G:0.14, T:0.20
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAACCACAAACCAAGTGCCACATT
Found at i:68616449 original size:22 final size:22
Alignment explanation
Indices: 68616414--68616524 Score: 138
Period size: 22 Copynumber: 5.0 Consensus size: 22
68616404 AGACTCACCA
68616414 CAGCTC-ATATGAGCTTACTGTT
1 CAGCTCGATA-GAGCTTACTGTT
68616436 CAGCTCGATAGAGCTTA-TCGTT
1 CAGCTCGATAGAGCTTACT-GTT
*
68616458 CAACTCGATAGAGCTTACTGTT
1 CAGCTCGATAGAGCTTACTGTT
*
68616480 CAGCTAGATAGAGCTTA-TCGTTT
1 CAGCTCGATAGAGCTTACT-G-TT
*
68616503 CAGCTCAATAGAGCTTACTGTT
1 CAGCTCGATAGAGCTTACTGTT
68616525 ATCAGCTTAG
Statistics
Matches: 78, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
21 2 0.03
22 53 0.68
23 22 0.28
24 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (22 bp):
CAGCTCGATAGAGCTTACTGTT
Found at i:68616490 original size:44 final size:45
Alignment explanation
Indices: 68616424--68616524 Score: 168
Period size: 44 Copynumber: 2.3 Consensus size: 45
68616414 CAGCTCATAT
* *
68616424 GAGCTTACTGTTCAGCTCGATAGAGCTTATCG-TTCAACTCGATA
1 GAGCTTACTGTTCAGCTAGATAGAGCTTATCGTTTCAACTCAATA
*
68616468 GAGCTTACTGTTCAGCTAGATAGAGCTTATCGTTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTAGATAGAGCTTATCGTTTCAACTCAATA
68616513 GAGCTTACTGTT
1 GAGCTTACTGTT
68616525 ATCAGCTTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 31 0.58
45 22 0.42
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (45 bp):
GAGCTTACTGTTCAGCTAGATAGAGCTTATCGTTTCAACTCAATA
Found at i:68617015 original size:43 final size:43
Alignment explanation
Indices: 68616954--68617040 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
68616944 AGAGTTGTAC
68616954 ATCACACTAACCAATTTCCGATTGGTACTTTTGATCTTGTGAA
1 ATCACACTAACCAATTTCCGATTGGTACTTTTGATCTTGTGAA
68616997 ATCACACTAACCAATTTCCGATTGGTACTTTTGATCTTGTGAA
1 ATCACACTAACCAATTTCCGATTGGTACTTTTGATCTTGTGAA
68617040 A
1 A
68617041 ATTTGTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (43 bp):
ATCACACTAACCAATTTCCGATTGGTACTTTTGATCTTGTGAA
Found at i:68617910 original size:14 final size:16
Alignment explanation
Indices: 68617878--68617911 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
68617868 GCACACAGCC
68617878 TGTTCACACGGGTGTG
1 TGTTCACACGGGTGTG
68617894 TGTTCACACGGGTGTG
1 TGTTCACACGGGTGTG
68617910 TG
1 TG
68617912 ACGTTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.18, G:0.38, T:0.32
Consensus pattern (16 bp):
TGTTCACACGGGTGTG
Found at i:68627122 original size:55 final size:55
Alignment explanation
Indices: 68627037--68627291 Score: 230
Period size: 55 Copynumber: 4.8 Consensus size: 55
68627027 TAGGGTTTAC
*
68627037 GGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAA
* * *
68627092 GGATACCATGTAAGACCATGTCAAGACATGGC-ATTGAT-AGGTTACTATAAGGCAAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTT--TCTAAGGC-AA
* * * * *
68627148 GG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGTAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTC-TAAGGCAA
* * * *
68627200 GGACACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAA-GCTTC-AA---AA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAA
* * * *
68627249 GGATACCACGTAAGACCATGACAAGTCATGGTAA-TGGTAAGGT
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT
68627292 ACCCGTGTAT
Statistics
Matches: 166, Mismatches: 25, Indels: 23
0.78 0.12 0.11
Matches are distributed among these distances:
49 36 0.22
50 1 0.01
52 7 0.04
53 39 0.23
54 10 0.06
55 68 0.41
56 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.22
Consensus pattern (55 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAA
Found at i:68627502 original size:16 final size:16
Alignment explanation
Indices: 68627481--68627511 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68627471 ATAAATTTGA
68627481 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68627497 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68627512 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68635266 original size:15 final size:15
Alignment explanation
Indices: 68635242--68635271 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68635232 TACATGAAAC
68635242 ACATCATGAATCTTT
1 ACATCATGAATCTTT
*
68635257 ACATCGTGAATCTTT
1 ACATCATGAATCTTT
68635272 TCTAACTCTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (15 bp):
ACATCATGAATCTTT
Found at i:68642079 original size:13 final size:13
Alignment explanation
Indices: 68642063--68642087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68642053 TTAAATTAGT
68642063 TAATTAGTTTAAA
1 TAATTAGTTTAAA
68642076 TAATTAGTTTAA
1 TAATTAGTTTAA
68642088 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:68643663 original size:37 final size:37
Alignment explanation
Indices: 68643612--68643685 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
68643602 TCCTTAGGGT
* * *
68643612 TTTCAATAGCCACCTTATCAACCGGAGAAAAAATCAA
1 TTTCAACAGACACCTTATCAACAGGAGAAAAAATCAA
68643649 TTTCAACAGACACCTTATCAACAGGAGAAAAAATCAA
1 TTTCAACAGACACCTTATCAACAGGAGAAAAAATCAA
68643686 ACCTTGAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.46, C:0.23, G:0.11, T:0.20
Consensus pattern (37 bp):
TTTCAACAGACACCTTATCAACAGGAGAAAAAATCAA
Found at i:68647397 original size:21 final size:21
Alignment explanation
Indices: 68647384--68647461 Score: 79
Period size: 21 Copynumber: 3.6 Consensus size: 21
68647374 TTTTTTATTA
68647384 TTTATTCTTATTTTTATTTTAT
1 TTTATT-TTATTTTTATTTTAT
*
68647406 TTTATTTTATTTTTCTTTTGATT
1 TTTATTTTATTTTTATTTT-A-T
**
68647429 TTTATTTTCATTTCAATTTTA-
1 TTTATTTT-ATTTTTATTTTAT
68647450 -TTATTTTATTTT
1 TTTATTTTATTTT
68647462 GAAAGACATA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 4 0.08
20 7 0.15
21 12 0.25
22 7 0.15
23 10 0.21
24 8 0.17
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (21 bp):
TTTATTTTATTTTTATTTTAT
Found at i:68647400 original size:6 final size:6
Alignment explanation
Indices: 68647375--68647441 Score: 68
Period size: 6 Copynumber: 11.5 Consensus size: 6
68647365 ACTCTTCCTT
* *
68647375 TTTTTA TTATTTA TTCTTA TTTTTA -TTTTA -TTTTA -TTTTA TTTTTC
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
68647421 TTTTGA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTT
68647442 CAATTTTATT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
5 15 0.29
6 31 0.60
7 6 0.12
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:68647402 original size:16 final size:15
Alignment explanation
Indices: 68647381--68647422 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
68647371 CCTTTTTTTA
68647381 TTATTTATTCTTATTT
1 TTATTTATTCTTA-TT
68647397 TTATTTTATT-TTATT
1 TTA-TTTATTCTTATT
68647412 TTATTT-TTCTT
1 TTATTTATTCTT
68647423 TTGATTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 2 0.08
14 5 0.21
15 5 0.21
16 6 0.25
17 6 0.25
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (15 bp):
TTATTTATTCTTATT
Found at i:68647405 original size:5 final size:5
Alignment explanation
Indices: 68647384--68647461 Score: 61
Period size: 5 Copynumber: 14.6 Consensus size: 5
68647374 TTTTTTATTA
*
68647384 TTTAT TCTTATT TTTAT TTTAT TTTAT TTTATT TTTCT TTTGATT TTTAT
1 TTTAT T-TTA-T TTTAT TTTAT TTTAT TTTA-T TTTAT TTT-A-T TTTAT
*
68647434 TTTCAT TTCAAT TTTA- -TTAT TTTAT TTT
1 TTT-AT TT-TAT TTTAT TTTAT TTTAT TTT
68647462 GAAAGACATA
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
3 3 0.05
5 32 0.53
6 19 0.32
7 6 0.10
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTAT
Done.