Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 229 of 770
Found at i:68647436 original size:12 final size:11
Alignment explanation
Indices: 68647376--68647461 Score: 84
Period size: 12 Copynumber: 7.4 Consensus size: 11
68647366 CTCTTCCTTT
68647376 TTTTATTATTTA
1 TTTTATT-TTTA
68647388 TTCTTATTTTTA
1 TT-TTATTTTTA
68647400 TTTTA-TTTTA
1 TTTTATTTTTA
*
68647410 TTTTATTTTTC
1 TTTTATTTTTA
68647421 TTTTGATTTTTA
1 TTTT-ATTTTTA
**
68647433 TTTTCATTTCAA
1 TTTT-ATTTTTA
68647445 TTTTATTATTTTA
1 TTTTA-T-TTTTA
68647458 TTTT
1 TTTT
68647462 GAAAGACATA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
10 10 0.16
11 12 0.19
12 28 0.45
13 12 0.19
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:68647437 original size:17 final size:16
Alignment explanation
Indices: 68647391--68647451 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 16
68647381 TTATTTATTC
*
68647391 TTATTTTTATTTTATT
1 TTATTTTTATTTTCTT
68647407 TTA-TTTTATTTTTCTT
1 TTATTTTTA-TTTTCTT
68647423 TTGATTTTTATTTTCATT
1 TT-ATTTTTATTTTC-TT
* *
68647441 TCAATTTTATT
1 TTATTTTTATT
68647452 ATTTTATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
15 5 0.13
16 11 0.29
17 14 0.37
18 8 0.21
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (16 bp):
TTATTTTTATTTTCTT
Found at i:68650364 original size:13 final size:13
Alignment explanation
Indices: 68650348--68650380 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
68650338 TTTAATTAAA
*
68650348 TTAGTTAATTAGT
1 TTAGATAATTAGT
68650361 TTAGATAATTAGT
1 TTAGATAATTAGT
68650374 TTA-ATAA
1 TTAGATAA
68650381 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:68651960 original size:24 final size:24
Alignment explanation
Indices: 68651933--68652002 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
68651923 AAACAGGAAA
68651933 CTCATAAGAGTTTTAATCAGGGAG
1 CTCATAAGAGTTTTAATCAGGGAG
* * *
68651957 CTCAT-AGAG-CTTAA-CAGGTAA
1 CTCATAAGAGTTTTAATCAGGGAG
68651978 CTCCA-AAGAGTTATT-ATCAGGGAG
1 CT-CATAAGAGTT-TTAATCAGGGAG
68652002 C
1 C
68652003 ACTGGATAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
21 7 0.20
22 10 0.29
23 5 0.14
24 13 0.37
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (24 bp):
CTCATAAGAGTTTTAATCAGGGAG
Found at i:68656772 original size:20 final size:21
Alignment explanation
Indices: 68656749--68656790 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
68656739 ATAAGCATGT
*
68656749 ATTTTG-ATGTTTGATGATAG
1 ATTTTGAATGCTTGATGATAG
*
68656769 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTGATGATAG
68656790 A
1 A
68656791 AATACAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.26, C:0.02, G:0.24, T:0.48
Consensus pattern (21 bp):
ATTTTGAATGCTTGATGATAG
Found at i:68657450 original size:29 final size:28
Alignment explanation
Indices: 68657405--68657460 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
68657395 GTGAATTGTA
*
68657405 CTGATTTGGCTTTGGGCCATGCATATCAG
1 CTGATTTGGCTTCGGGCCATG-ATATCAG
*
68657434 CTGATTTGGGTTCGGGCCATGATATCA
1 CTGATTTGGCTTCGGGCCATGATATCA
68657461 ATACTTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.34
Consensus pattern (28 bp):
CTGATTTGGCTTCGGGCCATGATATCAG
Found at i:68668635 original size:46 final size:46
Alignment explanation
Indices: 68668514--68668636 Score: 167
Period size: 46 Copynumber: 2.7 Consensus size: 46
68668504 ACCCATAAGC
* * **
68668514 GAACTCGAACTCAAATCAACGAGTTCGGGCGTTCGCATCCATAATT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAATT
* * *
68668560 GAACTTGGACTCAACTCAACAAATTCGGATGTTCGCATCCAT-ATGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAT-T
68668606 GAACTCGGACTCAACTCAACGAGTTCGGATG
1 GAACTCGGACTCAACTCAACGAGTTCGGATG
68668637 CCCAAATATC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
45 2 0.03
46 64 0.97
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAATT
Found at i:68674468 original size:46 final size:46
Alignment explanation
Indices: 68674409--68674529 Score: 181
Period size: 46 Copynumber: 2.6 Consensus size: 46
68674399 ACCCATAGGC
* *
68674409 GAACTC-AGACTCAACTCAACGAGGTCGGCCGTTCGCATCCATAAGT
1 GAACTCGA-ACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGT
* *
68674455 GAACTCGAACTCAACTCAACGAGTTCGGACGTTCGTATTCATAAGT
1 GAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGT
*
68674501 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGAACTCAACTCAACGAGTTCGGA
68674530 TGCCCAAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
46 68 0.99
47 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGT
Found at i:68684772 original size:40 final size:40
Alignment explanation
Indices: 68684679--68684821 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
68684669 AAATTGAATG
* * * * *
68684679 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* ** *
68684718 TTATCCGGATTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* * *
68684758 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGAT
*
68684798 AAATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
68684822 GTTTGTGCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 30 0.35
40 56 0.65
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
Found at i:68684844 original size:40 final size:40
Alignment explanation
Indices: 68684719--68684861 Score: 128
Period size: 40 Copynumber: 3.6 Consensus size: 40
68684709 GCTGAAAATT
** * * *
68684719 TATCCGGATTAAGACCCGAAGGCAATT-GTGCTAGTAGCT-A
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAATCG-TGA
* * *
68684759 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTGA
* * *
68684799 AATCCGGGCTAAGACCCGAAGGCGTTTGTGCAAATCGTGA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTGA
* * *
68684839 TATCCGGGTTAAGTCCCGTAGGC
1 TATCCGGGCTAAGACCCGAAGGC
68684862 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 83 0.95
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCGTGA
Found at i:68695252 original size:27 final size:28
Alignment explanation
Indices: 68695222--68695291 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
68695212 ATAATAAGTC
*
68695222 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
68695249 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
68695277 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68695292 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68703327 original size:27 final size:28
Alignment explanation
Indices: 68703297--68703366 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
68703287 ATAATAAGTC
*
68703297 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
68703324 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
68703352 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68703367 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68707746 original size:40 final size:40
Alignment explanation
Indices: 68707697--68707864 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
68707687 TCTTCGGAAT
* * *
68707697 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
68707736 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
68707776 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGAGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
68707816 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
68707856 TTAGCCCGG
1 TTAGCCCGG
68707865 GTATCATTCA
Statistics
Matches: 105, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 3 0.03
40 101 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:68709620 original size:42 final size:42
Alignment explanation
Indices: 68709555--68709636 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
68709545 CACAAATAGG
* *
68709555 GCACTTAGTGTGCGAAATCGAGATAGCTTCAGTTATATATTT
1 GCACTTAGTGTGAGAAATCGAGATAGCTTCAGCTATATATTT
* * *
68709597 GCACTTAGTGTGAGAGATTGAGATAGCTTCGGCTATATAT
1 GCACTTAGTGTGAGAAATCGAGATAGCTTCAGCTATATAT
68709637 ATATATATAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.34
Consensus pattern (42 bp):
GCACTTAGTGTGAGAAATCGAGATAGCTTCAGCTATATATTT
Found at i:68712314 original size:48 final size:48
Alignment explanation
Indices: 68712243--68713055 Score: 1364
Period size: 48 Copynumber: 17.0 Consensus size: 48
68712233 ATAAATATAT
*
68712243 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGCA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68712291 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68712339 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
** *
68712387 ATATATACGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68712435 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
68712483 ATATATGTGTGATATGTATATGTGGTAAAGTCGAATGGTGAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
68712530 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
68712578 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
68712625 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68712672 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * *
68712720 AGATATGTGTGAAATGTATATGTGGTAAAGCTC-AATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGC-CGAATGGCGAATGTGAA
68712768 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68712816 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68712864 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
68712912 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * *
68712960 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * * *
68713008 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
68713056 GGTTGTAACA
Statistics
Matches: 724, Mismatches: 37, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 139 0.19
48 584 0.81
49 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:68713150 original size:37 final size:37
Alignment explanation
Indices: 68713100--68713207 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
68713090 GGAAATATAT
68713100 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68713137 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
**
68713174 TCCGGGTAAGACCCGATGACTTTGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
68713208 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:68715945 original size:40 final size:40
Alignment explanation
Indices: 68715901--68716156 Score: 286
Period size: 40 Copynumber: 6.5 Consensus size: 40
68715891 GCTCGATTGT
* * * * *
68715901 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * *
68715941 CTTC-GGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
*
68715980 CTTCGGGACTTAACCC-GTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
*
68716019 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
* *
68716059 CTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * * * *
68716099 CTTC-GGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTAGTAAC-TCGCACAAATGC
*
68716139 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
68716157 ACACCATTCG
Statistics
Matches: 187, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.01
39 82 0.44
40 93 0.50
41 10 0.05
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
Found at i:68716036 original size:79 final size:79
Alignment explanation
Indices: 68715929--68716155 Score: 330
Period size: 79 Copynumber: 2.9 Consensus size: 79
68715919 TTATAGTGAT
* * *
68715929 TCGCACAATTGCCTTCGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAAC
1 TCGCACAAATGCCTTCGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
68715994 CCG-TTTTGGTAAC
66 CCGATTTTGGTAAC
* * *
68716007 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAA
1 TCGCACAAATGCCTTC-GGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
68716072 CCCGATTTTGGTAAC
65 CCCGATTTTGGTAAC
* * * * *
68716087 TCGCACAAATGCCTTCGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 TCGCACAAATGCCTTCGGAATTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAA
68716152 CCCG
65 CCCG
68716156 GACACCATTC
Statistics
Matches: 132, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
78 15 0.11
79 65 0.49
80 52 0.39
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
TCGCACAAATGCCTTCGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
CCGATTTTGGTAAC
Found at i:68724081 original size:40 final size:42
Alignment explanation
Indices: 68724023--68724287 Score: 166
Period size: 40 Copynumber: 6.8 Consensus size: 42
68724013 GGATATAGCG
* * *
68724023 ACTCGCTCG-ATTGTCTTCGGGACATT-GCCCGG-TTATAGTG
1 ACTCGCACGAATTGCCTTCGGGACATTAGCCCGGATT-TAGTA
*
68724063 ATTCGCAC-AATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCGCACGAATTGCCTTCGGGACATTAGCCCGGATTTAGTA
*
68724103 ACTCGCACGAA-TGCCTTCGGGAC-TTAACCC-G-----GTA
1 ACTCGCACGAATTGCCTTCGGGACATTAGCCCGGATTTAGTA
* * * *
68724137 ACT--CAC-AAATGCCTTCGGGAC-TTAACCCGGTTTTGGTA
1 ACTCGCACGAATTGCCTTCGGGACATTAGCCCGGATTTAGTA
* * * *
68724175 ACTCGCAC-AAATGCCTTC-GGAC-TTAACCCGGTTTTGGTA
1 ACTCGCACGAATTGCCTTCGGGACATTAGCCCGGATTTAGTA
* *
68724214 ACTCGCAC-AAATGCCTTCGGGA-ATT-GACCCGGATTTAGTC
1 ACTCGCACGAATTGCCTTCGGGACATTAG-CCCGGATTTAGTA
* **
68724254 ACTTAGCAC-AAAAGCCTTCGGGAC-TTAGCCCGGA
1 AC-TCGCACGAATTGCCTTCGGGACATTAGCCCGGA
68724288 CACCATTCGA
Statistics
Matches: 193, Mismatches: 12, Indels: 39
0.79 0.05 0.16
Matches are distributed among these distances:
31 2 0.01
32 22 0.11
33 1 0.01
34 6 0.03
38 6 0.03
39 43 0.22
40 82 0.42
41 30 0.16
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (42 bp):
ACTCGCACGAATTGCCTTCGGGACATTAGCCCGGATTTAGTA
Found at i:68724188 original size:72 final size:73
Alignment explanation
Indices: 68724068--68724286 Score: 253
Period size: 72 Copynumber: 2.9 Consensus size: 73
68724058 TAGTGATTCG
* * *
68724068 CACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCC
1 CACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
68724133 GGTAACT-
66 GGTAACTC
* * *
68724140 CACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC-GGACTTAACCC
1 CACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
68724204 GGTTTTGGTAACTC
66 ------GGTAACTC
* * * * *
68724218 GCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 -CACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAAC
68724283 CCGG
64 CCGG
68724287 ACACCATTCG
Statistics
Matches: 123, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
71 11 0.09
72 47 0.38
75 2 0.02
77 7 0.06
79 32 0.26
80 14 0.11
81 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (73 bp):
CACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
GGTAACTC
Found at i:68724200 original size:39 final size:40
Alignment explanation
Indices: 68724065--68724287 Score: 248
Period size: 40 Copynumber: 5.8 Consensus size: 40
68724055 TTATAGTGAT
* * * *
68724065 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
*
68724105 TCGCACGAATGCCTTCGGGACTTAACCC------GGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
*
68724139 T--CACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
*
68724177 TCGCACAAATGCCTTC-GGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
* * * *
68724216 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
* * *
68724256 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAACCCGGA
68724288 CACCATTCGA
Statistics
Matches: 157, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
32 24 0.15
34 6 0.04
38 7 0.04
39 39 0.25
40 55 0.35
41 26 0.17
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
Found at i:68727274 original size:48 final size:48
Alignment explanation
Indices: 68727205--68727971 Score: 1302
Period size: 48 Copynumber: 16.0 Consensus size: 48
68727195 AGATAAATAT
68727205 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68727253 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68727301 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
** *
68727349 ATATATACGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68727397 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
68727445 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
68727493 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68727541 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
68727589 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68727636 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
68727684 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
68727732 ATATATGTGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
68727780 ATATATGTGTGAAATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
68727828 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * *
68727876 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * * *
68727924 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
68727972 GGTTGTAACA
Statistics
Matches: 688, Mismatches: 30, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 0.07
48 642 0.93
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:68728066 original size:37 final size:37
Alignment explanation
Indices: 68728016--68728123 Score: 198
Period size: 37 Copynumber: 2.9 Consensus size: 37
68728006 GGAAATATAT
68728016 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68728053 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68728090 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
68728124 TCGTCTGAGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:68733525 original size:15 final size:16
Alignment explanation
Indices: 68733505--68733538 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
68733495 AACTATTAAC
68733505 AAAAAA-TAAACATAA
1 AAAAAATTAAACATAA
*
68733520 AAAAAATTAAGCATAA
1 AAAAAATTAAACATAA
68733536 AAA
1 AAA
68733539 TATATGTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAAAATTAAACATAA
Found at i:68736676 original size:10 final size:11
Alignment explanation
Indices: 68736661--68736707 Score: 53
Period size: 10 Copynumber: 4.4 Consensus size: 11
68736651 CAGTTTAGGA
68736661 TTTTTAAG-GT
1 TTTTTAAGAGT
*
68736671 TTTTTAAGATT
1 TTTTTAAGAGT
*
68736682 TTTGTTTAGAGT
1 TTT-TTAAGAGT
68736694 TTTTTAAG-GT
1 TTTTTAAGAGT
68736704 TTTT
1 TTTT
68736708 AAAATTTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 14 0.45
11 8 0.26
12 9 0.29
ACGTcount: A:0.19, C:0.00, G:0.17, T:0.64
Consensus pattern (11 bp):
TTTTTAAGAGT
Found at i:68736689 original size:32 final size:32
Alignment explanation
Indices: 68736653--68736715 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
68736643 TCTTCGATCA
*
68736653 GTTTAG-GATTTTTAAGGTTTTTTAAGATTTTT
1 GTTTAGAGATTTTTAAGG-TTTTTAAAATTTTT
*
68736685 GTTTAGAGTTTTTTAAGGTTTTTAAAATTTT
1 GTTTAGAGATTTTTAAGGTTTTTAAAATTTT
68736716 AAAATTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 18 0.64
33 10 0.36
ACGTcount: A:0.24, C:0.00, G:0.17, T:0.59
Consensus pattern (32 bp):
GTTTAGAGATTTTTAAGGTTTTTAAAATTTTT
Found at i:68736779 original size:28 final size:29
Alignment explanation
Indices: 68736746--68736811 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
68736736 TATATAAATA
*
68736746 TATAAAAATATAT-AAATTTTGAAATT-TT
1 TATAAAAAT-TATGAAATTTTAAAATTATT
* *
68736774 TATAAATATTTTGAAATTTTAAAATTATT
1 TATAAAAATTATGAAATTTTAAAATTATT
68736803 T-TAAAAATT
1 TATAAAAATT
68736812 TTAAAATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.06
28 27 0.84
29 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (29 bp):
TATAAAAATTATGAAATTTTAAAATTATT
Found at i:68736802 original size:19 final size:19
Alignment explanation
Indices: 68736761--68736821 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 19
68736751 AAATATATAA
68736761 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAA-TTTTA-AAATT
68736781 ATTTTGAAATTTTAAAATT
1 ATTTTGAAATTTTAAAATT
*
68736800 ATTTTAAAAATTTTAAAATT
1 ATTTT-GAAATTTTAAAATT
68736820 AT
1 AT
68736822 CCGTGTAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 24 0.63
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (19 bp):
ATTTTGAAATTTTAAAATT
Found at i:68736811 original size:12 final size:11
Alignment explanation
Indices: 68736789--68736821 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
68736779 ATATTTTGAA
68736789 ATTTTAAAATT
1 ATTTTAAAATT
68736800 ATTTTAAAA--
1 ATTTTAAAATT
68736809 ATTTTAAAATT
1 ATTTTAAAATT
68736820 AT
1 AT
68736822 CCGTGTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTTTAAAATT
Found at i:68736812 original size:28 final size:28
Alignment explanation
Indices: 68736746--68736819 Score: 64
Period size: 28 Copynumber: 2.6 Consensus size: 28
68736736 TATATAAATA
* *
68736746 TATAAA-AATATATAAATTTTGAAATTTT
1 TATAAATAATTTA-AAATTTTAAAATTTT
* *
68736774 TATAAATATTTTGAAATTTTAAAATTATT
1 TATAAATAATTTAAAATTTTAAAATT-TT
68736803 T-TAAA-AATTTTAAAATT
1 TATAAATAA-TTTAAAATT
68736820 ATCCGTGTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
27 1 0.03
28 30 0.81
29 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (28 bp):
TATAAATAATTTAAAATTTTAAAATTTT
Found at i:68744854 original size:49 final size:49
Alignment explanation
Indices: 68744794--68745352 Score: 835
Period size: 49 Copynumber: 11.3 Consensus size: 49
68744784 GTATGAGATA
68744794 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
68744843 TATATATGTGATAAGGCCTACTGGCCGATGTGATAAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68744892 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68744941 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68744990 TATATAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTG
1 TATAT-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA----G------TGTG
* *
68745050 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68745099 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68745148 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68745197 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
68745244 TATATATGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * *
68745291 TATATATGTGAT-AGGGCTGAGTGGCCAATGTGATGGATGTGAAA--GTG
1 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTG
*
68745338 TATAAATGTGATAAG
1 TATATATGTGATAAG
68745353 TCTCGAAGGG
Statistics
Matches: 476, Mismatches: 20, Indels: 29
0.91 0.04 0.06
Matches are distributed among these distances:
46 4 0.01
47 92 0.19
48 7 0.01
49 285 0.60
50 39 0.08
54 1 0.00
55 1 0.00
59 38 0.08
60 9 0.02
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:68745203 original size:256 final size:251
Alignment explanation
Indices: 68744794--68745300 Score: 888
Period size: 256 Copynumber: 2.0 Consensus size: 251
68744784 GTATGAGATA
* *
68744794 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
*
68744859 CCTACTGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
*
68744924 ATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
131 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GT
* *
68744989 GTATATAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTG
194 GTATAT-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTG
68745050 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* *
68745115 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
68745180 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGT
131 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGT
*
68745245 ATATATGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTG
196 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTG
68745301 ATAGGGCTGA
Statistics
Matches: 242, Mismatches: 9, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
251 13 0.05
253 36 0.15
254 8 0.03
255 3 0.01
256 182 0.75
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (251 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
CCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGT
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:68749272 original size:29 final size:29
Alignment explanation
Indices: 68749210--68749312 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
68749200 GTGACGAGAT
* * *
68749210 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
68749239 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
68749268 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
68749297 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68749313 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:68757276 original size:29 final size:29
Alignment explanation
Indices: 68757214--68757316 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
68757204 GTGACGAGAT
* * *
68757214 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
68757243 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
68757272 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
68757301 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68757317 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:68763984 original size:47 final size:47
Alignment explanation
Indices: 68763915--68764070 Score: 267
Period size: 47 Copynumber: 3.3 Consensus size: 47
68763905 ATGATATACA
68763915 TATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
*
68763962 TATATGTGTGATAAGGCCGAATGGCCGATGTGATGGATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* * *
68764009 TATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
*
68764056 CATATGTGTGATAAG
1 TATATGTGTGATAAG
68764071 TCCCGAAGGC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (47 bp):
TATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:68772224 original size:50 final size:50
Alignment explanation
Indices: 68772144--68772468 Score: 296
Period size: 50 Copynumber: 6.5 Consensus size: 50
68772134 CCATTGTGAG
*
68772144 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* * * * * * * **
68772194 TCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCG-TTAACTTCTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGA
* * * * * * * *
68772245 TCACGTCTATAGTACTAAGTGTAGGCTATTACGTGTATCAGATGGTTAAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* *
68772295 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* * * * * * *
68772345 TCGCCTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGA
* * * *
68772396 TCACGTGTGTAGTACTAGGTGCAGGCTACTACGTGTATCAGATGGTTA-A
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
*
68772445 GTCATGTGTGTAGTACTAAGTGCA
1 -TCACGTGTGTAGTACTAAGTGCA
68772469 TGTGACACCC
Statistics
Matches: 210, Mismatches: 58, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
49 7 0.03
50 134 0.64
51 67 0.32
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
Found at i:68772320 original size:101 final size:101
Alignment explanation
Indices: 68772144--68772325 Score: 247
Period size: 101 Copynumber: 1.8 Consensus size: 101
68772134 CCATTGTGAG
* * * ** *
68772144 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTCTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAATCACATGTGTAGTAC
*
68772209 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTA
66 TAAATACAGGCTACTATGCGTACCCGTTAACTTCTA
* * * * *
68772245 TCACGTCTATAGTACTAAGTGTAGGCTATTACGTGTATCAGATGGTTAAATCACGTGTGTAGTAC
1 TCACGTCTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAATCACATGTGTAGTAC
*
68772310 TAAGTACAGGCTACTA
66 TAAATACAGGCTACTA
68772326 CGTGTACCAG
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
101 68 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (101 bp):
TCACGTCTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAATCACATGTGTAGTAC
TAAATACAGGCTACTATGCGTACCCGTTAACTTCTA
Found at i:68772422 original size:151 final size:151
Alignment explanation
Indices: 68772144--68772465 Score: 538
Period size: 151 Copynumber: 2.1 Consensus size: 151
68772134 CCATTGTGAG
*
68772144 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* *
68772209 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTATCACGTCTATAGTACTAAGTGTAGGCTAT
66 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTATCACGTCTATAGTACTAAGTGCAGGCTAC
68772274 TACGTGTATCAGATGGTTAAA
131 TACGTGTATCAGATGGTTAAA
*
68772295 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCCTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* * * *
68772360 TAAGTGCAGGCTACTATGCGTACCCGTTAACTT-TGATCACGTGTGTAGTACTAGGTGCAGGCTA
66 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCT-ATCACGTCTATAGTACTAAGTGCAGGCTA
*
68772424 CTACGTGTATCAGATGGTTAAG
130 CTACGTGTATCAGATGGTTAAA
*
68772446 TCATGTGTGTAGTACTAAGT
1 TCACGTGTGTAGTACTAAGT
68772466 GCATGTGACA
Statistics
Matches: 160, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
150 1 0.01
151 159 0.99
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTATCACGTCTATAGTACTAAGTGCAGGCTAC
TACGTGTATCAGATGGTTAAA
Found at i:68774846 original size:48 final size:48
Alignment explanation
Indices: 68774784--68775043 Score: 468
Period size: 48 Copynumber: 5.4 Consensus size: 48
68774774 TATATATGTG
*
68774784 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
68774832 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
68774880 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
68774928 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
68774976 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTAT-
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
68775023 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
68775044 GTGATTCGGC
Statistics
Matches: 206, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
47 21 0.10
48 185 0.90
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:68775293 original size:35 final size:36
Alignment explanation
Indices: 68775208--68775319 Score: 174
Period size: 35 Copynumber: 3.1 Consensus size: 36
68775198 CTTGGAAATA
68775208 TATTCCGGGTAAGA-CCGATGACTACGTGTGGAGAT
1 TATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
68775243 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TAT-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * *
68775280 T-TTCCGGGTAAGACCCGATAACTACGTGTGGGGAC
1 TATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
68775315 TATTC
1 TATTC
68775320 GAGCTAAAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
35 34 0.48
36 15 0.21
37 22 0.31
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (36 bp):
TATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:68776638 original size:40 final size:40
Alignment explanation
Indices: 68776585--68776820 Score: 323
Period size: 40 Copynumber: 5.9 Consensus size: 40
68776575 TTGAGAGTTA
*
68776585 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
68776625 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
68776665 TATATCCGGGTTAAGTCTCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
68776705 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
** * * *
68776745 TATATATGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
68776785 TATATTCGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
68776821 AATTATGAGG
Statistics
Matches: 176, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 14 0.08
40 162 0.92
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:68776895 original size:29 final size:29
Alignment explanation
Indices: 68776861--68776958 Score: 119
Period size: 29 Copynumber: 3.4 Consensus size: 29
68776851 CAATCGAGCG
68776861 CTATGTGTGCGAGATT-GGTAATTGAGGCA
1 CTATGTGTGCGAG-TTCGGTAATTGAGGCA
**
68776890 CTATGTGTGCGAGTTCTTTAATTGAGGCA
1 CTATGTGTGCGAGTTCGGTAATTGAGGCA
** * *
68776919 CTATGTGTGCGAGTTCTATAATCGA-GCG
1 CTATGTGTGCGAGTTCGGTAATTGAGGCA
68776947 CTATGTGTGCGA
1 CTATGTGTGCGA
68776959 AATCAGTCAG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
28 16 0.25
29 47 0.75
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (29 bp):
CTATGTGTGCGAGTTCGGTAATTGAGGCA
Found at i:68777697 original size:2 final size:2
Alignment explanation
Indices: 68777690--68777716 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68777680 CATGTATAAA
68777690 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68777717 CTTTCATAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68780496 original size:48 final size:48
Alignment explanation
Indices: 68780434--68780889 Score: 867
Period size: 48 Copynumber: 9.5 Consensus size: 48
68780424 TATATATGTG
*
68780434 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
68780482 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
68780530 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
68780578 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
68780626 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
68780674 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
68780722 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
68780770 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
68780818 TGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
68780866 TGTGGTAAAGCCGAATGGCTAGTG
1 TGTGGTAAAGCCGAATGGCTAGTG
68780890 ATTCGGCTAG
Statistics
Matches: 400, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 400 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:68781109 original size:37 final size:37
Alignment explanation
Indices: 68781059--68781161 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
68781049 GGAAATATAT
*
68781059 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATC
*
68781096 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTC
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATC
* *
68781133 TCCGGGTAAGACCCGGTAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
68781162 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATC
Found at i:68782270 original size:16 final size:16
Alignment explanation
Indices: 68782249--68782280 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68782239 AGAATGGAGT
68782249 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
68782265 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
68782281 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:68784543 original size:40 final size:40
Alignment explanation
Indices: 68784486--68784593 Score: 139
Period size: 40 Copynumber: 2.7 Consensus size: 40
68784476 TGTCCATGTT
* * *
68784486 TGCACAT-TAGTGTCCCTGTTTGTACTTCGGTACCCTTGAA
1 TGCACATCT-GTGGCCCTGTTTGTACTTCGGTACCCCTAAA
*
68784526 TGCACATCTGTGGCCCTGTTTGTACTTTGGTACCCCTAAA
1 TGCACATCTGTGGCCCTGTTTGTACTTCGGTACCCCTAAA
*
68784566 TGCACATCTGT-GCCCTTGTTTGCACTTC
1 TGCACATCTGTGGCCC-TGTTTGTACTTC
68784594 AGTGTCGCTG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
39 4 0.07
40 55 0.92
41 1 0.02
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.37
Consensus pattern (40 bp):
TGCACATCTGTGGCCCTGTTTGTACTTCGGTACCCCTAAA
Found at i:68788462 original size:42 final size:41
Alignment explanation
Indices: 68788382--68788531 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
68788372 GAGCTTGGTC
68788382 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
68788423 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
68788465 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
68788506 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
68788532 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:68788514 original size:41 final size:40
Alignment explanation
Indices: 68788362--68788531 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
68788352 GCTAATCGGG
*
68788362 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
68788403 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
68788446 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
68788486 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
68788527 G-CTAA
1 GTCTAA
68788532 GAGTCGGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:68795227 original size:78 final size:81
Alignment explanation
Indices: 68795107--68795288 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
68795097 TACTCGTTCA
* *
68795107 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
68795170 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
**
68795186 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
68795249 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
*
68795265 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68795289 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:68795288 original size:40 final size:40
Alignment explanation
Indices: 68795105--68795288 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
68795095 GCTACTCGTT
*
68795105 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
68795145 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
68795185 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
68795223 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
68795264 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68795289 CATCATTCGA
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 25 0.20
39 21 0.17
40 68 0.54
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:68803358 original size:77 final size:79
Alignment explanation
Indices: 68803231--68803410 Score: 251
Period size: 77 Copynumber: 2.3 Consensus size: 79
68803221 TACTCGTTCA
* *
68803231 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
*
68803295 TTTAGTAAC-TCGCAC
65 -TTAGTAACTTAGCAC
**
68803310 AATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
68803373 TAGTCACTTAGCAC
66 TAGTAACTTAGCAC
*
68803387 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
68803411 CATCATTCGA
Statistics
Matches: 91, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
76 10 0.11
77 48 0.53
78 21 0.23
79 12 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
TAGTAACTTAGCAC
Found at i:68803376 original size:39 final size:39
Alignment explanation
Indices: 68803229--68803410 Score: 246
Period size: 40 Copynumber: 4.7 Consensus size: 39
68803219 GCTACTCGTT
* *
68803229 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
68803269 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
68803309 C-AATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
68803346 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAAC-TCGCA
68803386 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68803411 CATCATTCGA
Statistics
Matches: 128, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
37 16 0.12
38 19 0.15
39 45 0.35
40 47 0.37
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:68809402 original size:49 final size:49
Alignment explanation
Indices: 68809342--68809537 Score: 383
Period size: 49 Copynumber: 4.0 Consensus size: 49
68809332 GTATGAGATA
68809342 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68809391 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68809440 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68809489 TATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68809538 GCCGATGTGA
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 146 1.00
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:68809547 original size:75 final size:75
Alignment explanation
Indices: 68809461--68809611 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
68809451 TAAGGCCTAA
68809461 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAA
68809526 TGTGAAAGTG
66 TGTGAAAGTG
*
68809536 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAA
68809601 TGTGAAAGTG
66 TGTGAAAGTG
68809611 T
1 T
68809612 ATATATATGT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (75 bp):
TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAA
TGTGAAAGTG
Found at i:68809549 original size:26 final size:26
Alignment explanation
Indices: 68809513--68809563 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
68809503 GGCCTAATGA
68809513 CCGATGTGATGAATGTGAAAGTGTGG
1 CCGATGTGATGAATGTGAAAGTGTGG
68809539 CCGATGTGATGAATGTGAAAGTGTG
1 CCGATGTGATGAATGTGAAAGTGTG
68809564 TATATATGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.37, T:0.27
Consensus pattern (26 bp):
CCGATGTGATGAATGTGAAAGTGTGG
Found at i:68809563 original size:124 final size:124
Alignment explanation
Indices: 68809412--68809660 Score: 471
Period size: 124 Copynumber: 2.0 Consensus size: 124
68809402 TAAGGCCTAA
68809412 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
68809477 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG
68809536 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
68809601 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG
68809660 T
1 T
68809661 ATATATGTGA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (124 bp):
TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG
Found at i:68809591 original size:49 final size:48
Alignment explanation
Indices: 68809536--68809768 Score: 328
Period size: 47 Copynumber: 4.9 Consensus size: 48
68809526 TGTGAAAGTG
*
68809536 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCGAA
* *
68809585 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCGAA
*
68809634 TGGCCGATGTGATGAATGTG-AAGGTGTATATATGTGATGAGGCCGAA
1 TGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAA
* * *
68809681 TGGCCAATGTGATGAATGTGAAA-GTGTATATATGTGATAGGGCCGAG
1 TGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAA
* * * *
68809728 TGGCCAACGTGATGGATGTGAAA-GTGTATAAATGTGATAAG
1 TGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAG
68809769 TCCCGAAGGG
Statistics
Matches: 171, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
47 98 0.57
48 5 0.03
49 68 0.40
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (48 bp):
TGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAA
Found at i:68809652 original size:173 final size:171
Alignment explanation
Indices: 68809363--68809707 Score: 627
Period size: 173 Copynumber: 2.0 Consensus size: 171
68809353 TAAGGCCTAA
68809363 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
68809428 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATA
* *
68809493 TATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG
129 TATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTG
68809536 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
68809601 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATA
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATA
* *
68809666 TGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
131 TGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTG
68809707 T
1 T
68809708 ATATATGTGA
Statistics
Matches: 167, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
171 47 0.28
172 3 0.02
173 117 0.70
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (171 bp):
TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATA
TGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTG
Found at i:68812682 original size:42 final size:41
Alignment explanation
Indices: 68812598--68812747 Score: 144
Period size: 41 Copynumber: 3.6 Consensus size: 41
68812588 GAGCTTGGCC
68812598 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTCAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTCAGTT
* * *
68812639 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTCAGTT
* * * ** *
68812681 TCGAAGGGCGTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTCAGTT
* *
68812722 TCAAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
68812748 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTCAGTT
Found at i:68812739 original size:41 final size:40
Alignment explanation
Indices: 68812578--68812747 Score: 141
Period size: 41 Copynumber: 4.2 Consensus size: 40
68812568 GCTAATCGGG
* *
68812578 GTCTAAATCCGAGCTTGGCCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* * *
68812619 G-CTAATAACCGAACTCAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* * *
68812662 GTCATAA-CCG-GACTTAGTTTCGAAGGGCGTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCTCGAAGGGCTTTTGAGCCAGT
* * *
68812702 AGTCTAATCCGAGCTTGGTCTCAAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
68812743 G-CTAA
1 GTCTAA
68812748 GAGTCGGACT
Statistics
Matches: 104, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 47 0.45
42 23 0.22
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:68819219 original size:47 final size:47
Alignment explanation
Indices: 68819156--68819543 Score: 616
Period size: 47 Copynumber: 8.3 Consensus size: 47
68819146 CCCTTCGGGA
* *
68819156 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68819203 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68819250 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68819297 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
68819344 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
68819391 CCTATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68819438 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTC-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
68819484 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
68819531 CTTATCACATATA
1 CTTATCACATATA
68819544 CATATCTTGT
Statistics
Matches: 320, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 44 0.14
47 276 0.86
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:68822955 original size:40 final size:40
Alignment explanation
Indices: 68822911--68823258 Score: 520
Period size: 40 Copynumber: 8.7 Consensus size: 40
68822901 CCTGCATGAT
* * * *
68822911 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
68822951 TGCTCTTTAAGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTC-TTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
68822991 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68823031 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68823071 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68823111 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
68823151 TGCTGTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68823191 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
68823231 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
68823259 GTCGAGACCT
Statistics
Matches: 283, Mismatches: 23, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 7 0.02
40 272 0.96
41 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:68825873 original size:47 final size:47
Alignment explanation
Indices: 68825810--68826198 Score: 598
Period size: 47 Copynumber: 8.3 Consensus size: 47
68825800 CCCTTCGGGA
* *
68825810 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68825857 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
68825904 CTTATCTCATATATACACTTTTACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
68825951 CTTATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
68825998 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
68826045 CCTATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
68826092 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
68826139 CTTATCACATATATACACTTTTACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
68826186 CTTATCACATATA
1 CTTATCACATATA
68826199 CATATCTTGT
Statistics
Matches: 317, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 317 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:68836041 original size:33 final size:33
Alignment explanation
Indices: 68835989--68836061 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
68835979 CTGCAACTAT
*
68835989 GGAGAAGGCTACAAAAGGACCAGAGGGAGATAA
1 GGAGAAGGCCACAAAAGGACCAGAGGGAGATAA
* *
68836022 GGAGAAGGCCACAACAGGACCAGAGGGAGATGA
1 GGAGAAGGCCACAAAAGGACCAGAGGGAGATAA
*
68836055 GAAGAAG
1 GGAGAAG
68836062 ATTGAATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.14, G:0.38, T:0.04
Consensus pattern (33 bp):
GGAGAAGGCCACAAAAGGACCAGAGGGAGATAA
Found at i:68838604 original size:55 final size:53
Alignment explanation
Indices: 68838517--68838750 Score: 187
Period size: 55 Copynumber: 4.4 Consensus size: 53
68838507 ATTAGGGTTT
*
68838517 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGT-AGGTTTCTAAAGC
* * * * *
68838572 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAGGTTTCTA-AA-GC
** * ** *
68838627 AAAGG-CCCCATGTAAGACCATGCCAA-AGCATGGCATTGGT-GACTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGA-CATGGAATTGGTAGGTTTC-TAAAGC
* * * *
68838680 AATGATACCATGTAAGACCATGTCGAGACATGGGAA-TGGTATGTTTC--AA--
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GGAATTGGTAGGTTTCTAAAGC
*
68838729 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
68838751 ACATGGTAAG
Statistics
Matches: 143, Mismatches: 27, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
49 20 0.14
51 1 0.01
52 3 0.02
53 33 0.23
54 18 0.13
55 64 0.45
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAGGTTTCTAAAGC
Found at i:68845580 original size:31 final size:31
Alignment explanation
Indices: 68845542--68845604 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
68845532 TGGGGCAAAG
68845542 GAAGGACAAGGTTTTCCATACGATATATTAT
1 GAAGGACAAGGTTTTCCATACGATATATTAT
**
68845573 GAAGGACAAGGTTTTCCATGTGATATATTAT
1 GAAGGACAAGGTTTTCCATACGATATATTAT
68845604 G
1 G
68845605 TGAGCAAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (31 bp):
GAAGGACAAGGTTTTCCATACGATATATTAT
Found at i:68849510 original size:49 final size:47
Alignment explanation
Indices: 68849393--68849709 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
68849383 GATTTTACGC
* * *
68849393 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
68849440 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
68849487 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
68849536 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
68849585 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
68849632 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
68849679 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
68849710 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:68849517 original size:96 final size:93
Alignment explanation
Indices: 68849393--68849709 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
68849383 GATTTTACGC
68849393 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
68849458 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
68849487 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
68849552 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
68849585 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
68849650 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
68849679 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
68849710 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:68851779 original size:40 final size:42
Alignment explanation
Indices: 68851640--68851833 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 42
68851630 CTCGACGATG
68851640 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
*
68851682 ATCCGGGTTAAGTCCCG-AGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
* * * *
68851723 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTG-T-TAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
* * * *
68851763 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG--ATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
* *
68851803 ATCCGGGCTAAAT-CCGAAGAGCATTCATGCT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
68851834 AGTGATGTAT
Statistics
Matches: 141, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 18 0.13
40 48 0.34
41 42 0.30
42 33 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (42 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
Found at i:68851871 original size:40 final size:39
Alignment explanation
Indices: 68851741--68851881 Score: 147
Period size: 40 Copynumber: 3.6 Consensus size: 39
68851731 TAAGTCCCGT
* * * * * *
68851741 AGAGCATTCGTGCTGGTGTTACATCCGGGCTAAATCCCGA
1 AGAGCATTCATGCTAGTGATATATCCGGACCAAAT-CCGA
* *
68851781 AGAGCATTCATGCTAGTGATATATCCGGGCTAAATCCGA
1 AGAGCATTCATGCTAGTGATATATCCGGACCAAATCCGA
* **
68851820 AGAGCATTCATGCTAGTGATGTATCCGGACCAGGTTCCGA
1 AGAGCATTCATGCTAGTGATATATCCGGACCA-AATCCGA
* *
68851860 AGAGCAGTCATGCTGGTGATAT
1 AGAGCATTCATGCTAGTGATAT
68851882 GTATTCGGGC
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 33 0.38
40 55 0.62
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
AGAGCATTCATGCTAGTGATATATCCGGACCAAATCCGA
Found at i:68851978 original size:43 final size:43
Alignment explanation
Indices: 68851874--68852136 Score: 447
Period size: 43 Copynumber: 6.1 Consensus size: 43
68851864 CAGTCATGCT
*
68851874 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
*
68851917 -GTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
68851959 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
*
68852002 GGTGATATGTATTCGGGTCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
68852045 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
* * * **
68852088 GGTGATATGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
68852131 GGTGAT
1 GGTGAT
68852137 TCGAGCAAGG
Statistics
Matches: 211, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
42 42 0.20
43 169 0.80
ACGTcount: A:0.14, C:0.22, G:0.32, T:0.32
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
Found at i:68855995 original size:49 final size:47
Alignment explanation
Indices: 68855878--68856194 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
68855868 GATTTTACGC
* * *
68855878 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
68855925 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
68855972 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
68856021 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
68856070 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
68856117 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
68856164 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
68856195 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:68856002 original size:96 final size:93
Alignment explanation
Indices: 68855878--68856194 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
68855868 GATTTTACGC
68855878 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
68855943 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
68855972 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
68856037 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
68856070 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
68856135 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
68856164 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
68856195 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:68859868 original size:29 final size:28
Alignment explanation
Indices: 68859798--68859872 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
68859788 ATACTCGATT
* *
68859798 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
68859826 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
68859855 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
68859873 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:68859889 original size:29 final size:29
Alignment explanation
Indices: 68859856--68859929 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
68859846 CCTTCGAGCT
68859856 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
68859885 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68859914 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68859930 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68867731 original size:29 final size:28
Alignment explanation
Indices: 68867661--68867735 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
68867651 ATACTCGATT
* *
68867661 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
68867689 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
68867718 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
68867736 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:68867752 original size:29 final size:29
Alignment explanation
Indices: 68867719--68867792 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
68867709 CCTTCGAGCT
68867719 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
68867748 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68867777 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68867793 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68869551 original size:27 final size:27
Alignment explanation
Indices: 68869521--68869726 Score: 214
Period size: 27 Copynumber: 7.6 Consensus size: 27
68869511 TTAGTTTACC
*
68869521 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
68869548 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68869575 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68869602 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
68869629 TAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** * * *
68869656 AAATTACTGAAATACCCATAGTTTGCA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
68869683 AATTTACTGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
68869710 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
68869727 TCGACTTGTA
Statistics
Matches: 151, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:68869586 original size:54 final size:54
Alignment explanation
Indices: 68869511--68869727 Score: 254
Period size: 54 Copynumber: 4.0 Consensus size: 54
68869501 TTAGAATACT
* * *
68869511 TTAGTTTACCAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
* *
68869565 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
* ** * * **
68869619 TTGGTTTGTATAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
* * * ** * **
68869673 ATAGTTTGCAAATTTACTGAAATACCCTTGATTTGTAAAATTACTGAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
68869727 T
1 T
68869728 CGACTTGTAA
Statistics
Matches: 141, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 141 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
TTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC
Found at i:68869660 original size:81 final size:82
Alignment explanation
Indices: 68869512--68869726 Score: 236
Period size: 81 Copynumber: 2.6 Consensus size: 82
68869502 TAGAATACTT
* * * *
68869512 TAGTTTACCAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTAGTTTACAA
1 TAGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGAGTTTACAA
*
68869576 AATTACCAAAATACCCC
66 AATTACCAAAATACCCA
* * * ***
68869593 TGGTTTATAAAATTACCAAAATACCCTTGGTTTGTATAATTACCAAAATACCCCTGA-TTTGTGA
1 TAGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGAGTTTACAA
**
68869657 AATTACTGAAATACCCA
66 AATTACCAAAATACCCA
* * ** * **
68869674 TAGTTTGCAAATTTACTGAAATACCCTTGATTTGTAAAATTACTGAAATACCC
1 TAGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC
68869727 TCGACTTGTA
Statistics
Matches: 110, Mismatches: 23, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
81 105 0.95
82 5 0.05
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (82 bp):
TAGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGAGTTTACAA
AATTACCAAAATACCCA
Found at i:68869753 original size:27 final size:27
Alignment explanation
Indices: 68869686--68869757 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
68869676 GTTTGCAAAT
* * * *
68869686 TTACTGAAATACCCTTGATTTGTAAAA
1 TTACTCAAACACCCTCGACTTGTAAAA
* *
68869713 TTACTGAAATACCCTCGACTTGTAAAA
1 TTACTCAAACACCCTCGACTTGTAAAA
68869740 TTA-TCAAAGCACCCTCGA
1 TTACTCAAA-CACCCTCGA
68869758 TTTACAGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 4 0.10
27 36 0.90
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (27 bp):
TTACTCAAACACCCTCGACTTGTAAAA
Found at i:68869760 original size:54 final size:53
Alignment explanation
Indices: 68869536--68869760 Score: 134
Period size: 54 Copynumber: 4.2 Consensus size: 53
68869526 ACCAAAATAC
* ** * * * *
68869536 CCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTAC-CAAAATA
1 CCCTGATTTGTAAAATTACTGAAATACCCATAGCTTGCAAAATTACTC-AAACA
* * ** * * * * * *
68869589 CCCCTGGTTTATAAAATTACCAAAATACCCTTGGTTTGTATAATTAC-CAAAATA
1 -CCCTGATTTGTAAAATTACTGAAATACCCATAGCTTGCAAAATTACTC-AAACA
* * * * *
68869643 CCCCTGATTTGTGAAATTACTGAAATACCCATAGTTTGCAAATTTACTGAAATA
1 -CCCTGATTTGTAAAATTACTGAAATACCCATAGCTTGCAAAATTACTCAAACA
* *
68869697 CCCTTGATTTGTAAAATTACTGAAATACCC-TCGACTTGTAAAATTA-TCAAAGCA
1 CCC-TGATTTGTAAAATTACTGAAATACCCATAG-CTTGCAAAATTACTCAAA-CA
68869751 CCCTCGATTT
1 CCCT-GATTT
68869761 ACAGAATTAC
Statistics
Matches: 143, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
53 10 0.07
54 133 0.93
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.32
Consensus pattern (53 bp):
CCCTGATTTGTAAAATTACTGAAATACCCATAGCTTGCAAAATTACTCAAACA
Found at i:68869822 original size:27 final size:26
Alignment explanation
Indices: 68869800--68870040 Score: 257
Period size: 27 Copynumber: 9.0 Consensus size: 26
68869790 AAAATTATTA
*
68869800 AAATACACCTGTAGGGTAGAATTACTG
1 AAATAC-CCTGTAGGGTAGAATTACCG
* * *
68869827 AAATACCCTTGTAAGGTAGAATTATCA
1 AAATACCC-TGTAGGGTAGAATTACCG
* *
68869854 AAATACCCTATAGGGTAGAATTACTG
1 AAATACCCTGTAGGGTAGAATTACCG
* *
68869880 AAATACCCCTGAAGGGTAGAAATACCG
1 AAATA-CCCTGTAGGGTAGAATTACCG
68869907 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATA-CCCTGTAGGGTAGAATTACCG
*
68869934 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCC-TGTAGGGTAGAATTACCG
* *
68869961 AAATACCCCTATAGGGTAGAATTACTG
1 AAATA-CCCTGTAGGGTAGAATTACCG
* * *
68869988 AAATACTCCTATAAGGTAGAATTATCG
1 AAATAC-CCTGTAGGGTAGAATTACCG
* * *
68870015 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCC-TGTAGGGTAGAATTACC
68870041 ATTTTACCCC
Statistics
Matches: 180, Mismatches: 28, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 26 0.14
27 151 0.84
28 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (26 bp):
AAATACCCTGTAGGGTAGAATTACCG
Found at i:68869980 original size:81 final size:81
Alignment explanation
Indices: 68869800--68870036 Score: 309
Period size: 81 Copynumber: 3.0 Consensus size: 81
68869790 AAAATTATTA
* * * * *
68869800 AAATACACCTGTAGGGTAGAATTACTGAAATACCCTTGTAAGGTAGAATTATCAAAATACCC-TA
1 AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTG
* *
68869864 TAGGGTAGAATTACTG
66 TAGGGTAGAAATACCG
* * * *
68869880 AAATACCCCTGA-AGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTT
1 AAATACCCCT-ATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTT
68869944 GTAGGGTAGAAATACCG
65 GTAGGGTAGAAATACCG
* * *
68869961 AAATACCCCTATAGGGTAGAATTACTGAAATACTCCTATAAGGTAGAATTATCGAGATACCCTTG
1 AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTG
*
68870026 TGGGGTA-AAAT
66 TAGGGTAGAAAT
68870037 TACCATTTTA
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 58 0.43
81 77 0.57
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (81 bp):
AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTG
TAGGGTAGAAATACCG
Found at i:68881085 original size:40 final size:40
Alignment explanation
Indices: 68881016--68881173 Score: 176
Period size: 40 Copynumber: 3.9 Consensus size: 40
68881006 GAATATGCCC
* * * * *
68881016 CTGGCTTGATAGCCCTTCGAAACTGAGTTCGGTCATGA-CA
1 CTGGCTTAAAAGCCCTTCGGAACTAAGTTCGGTTAT-ATCA
* * *
68881056 CTGG-TTCGAAAGTCCTTCGGAACTAAGTTCGGTTATATGA
1 CTGGCTT-AAAAGCCCTTCGGAACTAAGTTCGGTTATATCA
* *
68881096 CTGGCTTAAAAGCCCTTCAGAACTAAGTCCGGTTATATCA
1 CTGGCTTAAAAGCCCTTCGGAACTAAGTTCGGTTATATCA
*
68881136 CTGGCTTAAAAGCCCTTCGGAACTAAGTCCGGATTATA
1 CTGGCTTAAAAGCCCTTCGGAACTAAGTTCGG-TTATA
68881174 AATCCCGATT
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 92 0.90
41 7 0.07
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (40 bp):
CTGGCTTAAAAGCCCTTCGGAACTAAGTTCGGTTATATCA
Found at i:68889205 original size:40 final size:39
Alignment explanation
Indices: 68889134--68889272 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 39
68889124 TGGCTTGAAG
* * * * *
68889134 GCCCTTCGTAACTGAGTTCGGTCATGA-CACTGGTTCGAAA
1 GCCCTTCGGAACTAAGTCCGGTTAT-ATCACTGGTT-AAAA
*
68889174 GTCCTTCGGAACTAAGTCCGGTTATATCACTGGCTTAAAA
1 GCCCTTCGGAACTAAGTCCGGTTATATCACTGG-TTAAAA
* * * *
68889214 CCCCTTCAGACCTAAGTCCGGTTATATCACTAGCTTAAAA
1 GCCCTTCGGAACTAAGTCCGGTTATATCACT-GGTTAAAA
68889254 GCCCTTCGGAACTAAGTCC
1 GCCCTTCGGAACTAAGTCC
68889273 AGATTTTAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 78 0.95
41 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (39 bp):
GCCCTTCGGAACTAAGTCCGGTTATATCACTGGTTAAAA
Found at i:68896622 original size:29 final size:27
Alignment explanation
Indices: 68896588--68896690 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
68896578 TACTCAATCA
*
68896588 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
68896617 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
68896646 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
68896675 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68896691 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:68904129 original size:24 final size:24
Alignment explanation
Indices: 68904014--68904123 Score: 166
Period size: 24 Copynumber: 4.6 Consensus size: 24
68904004 GAAATGACTT
*
68904014 TGGCACTATGTGTGCAGACTTGTA
1 TGGCACTATGTGTGCGGACTTGTA
68904038 TGGCACTATGTGTGCGGACTTGTA
1 TGGCACTATGTGTGCGGACTTGTA
* *
68904062 TGGTACTATGTGTGCGGAATTGTA
1 TGGCACTATGTGTGCGGACTTGTA
* * *
68904086 TGGCACTATGTATGCGGATTTATA
1 TGGCACTATGTGTGCGGACTTGTA
68904110 TGGCACTATGTGTG
1 TGGCACTATGTGTG
68904124 TGGATTGGAA
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 78 1.00
ACGTcount: A:0.20, C:0.14, G:0.31, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGACTTGTA
Found at i:68909819 original size:46 final size:48
Alignment explanation
Indices: 68909768--68909898 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 48
68909758 ATGGTTGAGC
68909768 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
68909815 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
*
68909860 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68909899 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 28 0.40
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:68914854 original size:24 final size:24
Alignment explanation
Indices: 68914715--68914852 Score: 231
Period size: 24 Copynumber: 5.8 Consensus size: 24
68914705 GAAATGACTT
68914715 TGGCACTATGTGTGCGGACTTGTA
1 TGGCACTATGTGTGCGGACTTGTA
68914739 TGGCACTATGTGTGCGGACTTGTA
1 TGGCACTATGTGTGCGGACTTGTA
68914763 TGGCACTATGTGTGCGGACTTGTA
1 TGGCACTATGTGTGCGGACTTGTA
* *
68914787 TGGTACTATGTGTGCGGAATTGTA
1 TGGCACTATGTGTGCGGACTTGTA
* * *
68914811 TGGCACTATGTGTGTGGATTTATA
1 TGGCACTATGTGTGCGGACTTGTA
68914835 TGGCACTATGTGTGCGGA
1 TGGCACTATGTGTGCGGA
68914853 TTGGAATTTC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 107 1.00
ACGTcount: A:0.18, C:0.14, G:0.33, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGACTTGTA
Found at i:68914869 original size:72 final size:72
Alignment explanation
Indices: 68914721--68914916 Score: 227
Period size: 72 Copynumber: 2.7 Consensus size: 72
68914711 ACTTTGGCAC
* * * *
68914721 TATGTGTGCGGACTTGTATGGCACTATGTGTGCGGACTTGTATGGCACTATGTGTGCGGACTTGT
1 TATGTGTGCGGAATTGTATGGCACTATGTGTGTGGACTTATATGGCACTATGTGTGCGGACTTGA
*
68914786 ATGGTAC
66 ATGGTAA
*
68914793 TATGTGTGCGGAATTGTATGGCACTATGTGTGTGGATTTATATGGCACTATGTGTGCGGA-TTGG
1 TATGTGTGCGGAATTGTATGGCACTATGTGTGTGGACTTATATGGCACTATGTGTGCGGACTT-G
*
68914857 AAT-TTCAA
65 AATGGT-AA
* * * * * *
68914865 TATGTATG-TGAATTGCTAAGGCACTATGTGTGTGGGCTAACATGGCACTATG
1 TATGTGTGCGGAATTG-TATGGCACTATGTGTGTGGACTTATATGGCACTATG
68914917 GGTATGAATT
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
71 9 0.08
72 98 0.92
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (72 bp):
TATGTGTGCGGAATTGTATGGCACTATGTGTGTGGACTTATATGGCACTATGTGTGCGGACTTGA
ATGGTAA
Found at i:68921583 original size:80 final size:79
Alignment explanation
Indices: 68921450--68921602 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 79
68921440 TTATTTGATG
* * * *
68921450 TGGAATTGTATCCGGGCTTAAAGACCCTCAGGCTTCATGCTGGAATTGTATCCGGGCTTAAAGAC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTGCATCCGCG-TTAAAAAC
68921515 CCGCAGGCTCCGTGC
65 CCGCAGGCTCCGTGC
*
68921530 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAA-TGACATCCGCGTTAAAAAC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG-CATCCGCGTTAAAAAC
*
68921594 CTGCAGGCT
65 CCGCAGGCT
68921603 GTGCTAAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
79 17 0.26
80 49 0.74
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (79 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTGCATCCGCGTTAAAAACC
CGCAGGCTCCGTGC
Found at i:68921602 original size:39 final size:40
Alignment explanation
Indices: 68921450--68921575 Score: 225
Period size: 40 Copynumber: 3.1 Consensus size: 40
68921440 TTATTTGATG
* *
68921450 TGGAATTGTATCCGGGCTTAAAGACCCTCAGGCTTCATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
68921490 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTCCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
68921530 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
68921570 TGGAAT
1 TGGAAT
68921576 GACATCCGCG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:68926137 original size:46 final size:46
Alignment explanation
Indices: 68926087--68926259 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
68926077 TGATTGAGCA
68926087 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68926133 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68926178 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
68926226 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68926260 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 59 0.55
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68926243 original size:93 final size:93
Alignment explanation
Indices: 68926084--68926254 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
68926074 GGATGATTGA
*
68926084 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
68926149 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
68926177 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
68926241 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
68926255 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:68939496 original size:16 final size:16
Alignment explanation
Indices: 68939458--68939496 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
68939448 ACAAATACCA
*
68939458 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
68939474 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
68939490 AAAAGCT
1 AAAAGCT
68939497 AAAAGTTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:68939766 original size:29 final size:28
Alignment explanation
Indices: 68939715--68939799 Score: 116
Period size: 28 Copynumber: 3.0 Consensus size: 28
68939705 AGCATGACTG
*
68939715 TAAAAGTGATTGGGCCTAGTGGGCCATA
1 TAAATGTGATTGGGCCTAGTGGGCCATA
*
68939743 TAAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGA-TTGGGCCTAGTGGGCCATA
* **
68939772 TGAATAAGATTGGGCCTAGTGGGCCATA
1 TAAATGTGATTGGGCCTAGTGGGCCATA
68939800 AGCATGTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.52
29 24 0.48
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAGTGGGCCATA
Found at i:68939794 original size:28 final size:28
Alignment explanation
Indices: 68939722--68939799 Score: 111
Period size: 29 Copynumber: 2.8 Consensus size: 28
68939712 CTGTAAAAGT
**
68939722 GATTGGGCCTAGTGGGCCATATAAATGT
1 GATTGGGCCTAGTGGGCCATATAAATAA
* *
68939750 GATTTGGGCCTAATGGGCCATATGAATAA
1 GA-TTGGGCCTAGTGGGCCATATAAATAA
68939779 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAGTGGGCCATA
68939800 AGCATGTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 20 0.45
29 24 0.55
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATAAATAA
Found at i:68940993 original size:18 final size:17
Alignment explanation
Indices: 68940970--68941009 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
68940960 TTTAAAGAAG
68940970 GGTTTTCAATGAAAACAA
1 GGTTTTCAAT-AAAACAA
**
68940988 GGTTTTCGCTAAAACAA
1 GGTTTTCAATAAAACAA
68941005 GGTTT
1 GGTTT
68941010 GGGGTGTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (17 bp):
GGTTTTCAATAAAACAA
Found at i:68941800 original size:43 final size:43
Alignment explanation
Indices: 68941662--68941827 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 43
68941652 AATAAGCTCG
* * * * *
68941662 TACAATGCC-ATATCCC-GATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
* * * * * *
68941702 TATCAATGCCACTGTCCCAGAAAGGGTCTTACACGAAAT-TGAT
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
*
68941745 TAACGACT-CCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
1 T-AC-AATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
*
68941789 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
68941828 ACATCTCGAT
Statistics
Matches: 99, Mismatches: 19, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
40 2 0.02
41 7 0.07
42 7 0.07
43 77 0.78
44 6 0.06
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
Found at i:68945739 original size:49 final size:49
Alignment explanation
Indices: 68945660--68945891 Score: 257
Period size: 49 Copynumber: 4.7 Consensus size: 49
68945650 TCTATTGTGA
*
68945660 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * * *
68945709 GGTCGCATGTGTAGTACAAAGTGCAAGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * * * * * * **
68945760 GATCACGTGTATAGTACTAACTGTAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
68945809 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
**
68945859 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
68945892 TGCGTACCAG
Statistics
Matches: 147, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 72 0.49
50 40 0.27
51 35 0.24
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:68945871 original size:101 final size:99
Alignment explanation
Indices: 68945662--68945904 Score: 267
Period size: 100 Copynumber: 2.4 Consensus size: 99
68945652 TATTGTGAGG
* *
68945662 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACA
1 TCACGTGT-TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACA
* *
68945727 AAGTGCAAGCTACTATGCGTACCCGATAACTTTGA
65 AAGTGCAAGCTACTACGCGTACCCGATAACTTGGA
* * * ** *
68945762 TCACGTGTATAGTACTAACTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGT-TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * * *
68945827 TAAGTGCAGGCTACTACGTGTA-CCGAATAA-TTGGT
64 AAAGTGCAAGCTACTACGCGTACCCG-ATAACTTGGA
* * *
68945862 TGCATGTG-TAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 T-CACGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
68945905 GCCTTGGCTA
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
99 29 0.25
100 47 0.40
101 42 0.36
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (99 bp):
TCACGTGTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACAA
AGTGCAAGCTACTACGCGTACCCGATAACTTGGA
Found at i:68949847 original size:29 final size:29
Alignment explanation
Indices: 68949814--68949945 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
68949804 GTGACGAGAT
*
68949814 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
68949843 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
68949872 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
68949901 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
68949930 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
68949946 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:68954858 original size:27 final size:27
Alignment explanation
Indices: 68954801--68954862 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
68954791 TATGCCGGTC
*
68954801 ATTTTACACTACAAGAGTATTTAGGTA
1 ATTTTACACTACAAGAGTATTTAGATA
* * * * *
68954828 ATTTTACACTCCAAGGGTCTTTCGATT
1 ATTTTACACTACAAGAGTATTTAGATA
68954855 ATTTTACA
1 ATTTTACA
68954863 AATCGGGGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTAGATA
Found at i:68954872 original size:27 final size:27
Alignment explanation
Indices: 68954841--68955172 Score: 339
Period size: 27 Copynumber: 12.3 Consensus size: 27
68954831 TTACACTCCA
* *
68954841 AGGGTCTTTCGATTATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
68954868 GGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
68954895 AGGGTATTTCGATAATTTTATAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
68954922 AGAGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
68954949 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
68954976 ATGGTGTTTCGGTAATTTCACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
68955003 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
68955030 ACGGTACTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
68955056 CGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
68955083 -GGCGTATTTC-AGTAATTTTACAAATCG
1 AGG-GTATTTCGA-TAATTTTACAAATCG
* * *
68955110 AGGGTGTTTCGATAATTTCACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
68955137 GGGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
68955164 AGGGTATTT
1 AGGGTATTT
68955173 TAGTAATTTC
Statistics
Matches: 251, Mismatches: 47, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
26 22 0.09
27 226 0.90
28 3 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:68954882 original size:54 final size:54
Alignment explanation
Indices: 68954817--68955172 Score: 376
Period size: 54 Copynumber: 6.6 Consensus size: 54
68954807 CACTACAAGA
* * * * * *
68954817 GTATTTAGGTAATTTTAC-ACTCCAAGGGTCTTTCGATTATTTTACAAATCGGGG
1 GTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCGAGG
* * * * *
68954871 GTGTTTCGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTATAAATCAAGA
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGG
* * * *
68954925 GTATTTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGATG
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGG
* * * * * *
68954979 GTGTTTCGGTAATTTCACAAATTGAGGGTATTTTGGTAATTTTACAAATCGACG
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGG
* * * * *
68955033 GTACTTCAGTAATTTCAC-AATCGCGGGTATTTTGATAATTTTACAAATCG-GG
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGG
* * * * *
68955085 CGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATTGGGG
1 -GTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGG
* *
68955140 GTATTTCGATAATTTTATAAATCGAGGGTATTT
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTT
68955173 TAGTAATTTC
Statistics
Matches: 253, Mismatches: 45, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
52 1 0.00
53 45 0.18
54 203 0.80
55 4 0.02
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
GTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGG
Found at i:68955105 original size:134 final size:134
Alignment explanation
Indices: 68954841--68955182 Score: 400
Period size: 134 Copynumber: 2.5 Consensus size: 134
68954831 TTACACTCCA
* * * * * * * * * *
68954841 AGGGTCTTTCGATTATTTTACAAATCGGGGGTGTTTCGGTAATTTTACAAATTGAGGGTATTTC-
1 AGGGTGTTTCGATAATTTCACAAATTGAGGGTATTTCGATAATTTTACAAATCGACGGTACTTCA
* * ** * * * *
68954905 GATAATTTTATAAATCAAGAGTATTTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTAC
66 G-TAATTTCA-CAATCGCGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
68954970 AAATCG
129 AAATCG
* * * *
68954976 ATGGTGTTTCGGTAATTTCACAAATTGAGGGTATTTTGGTAATTTTACAAATCGACGGTACTTCA
1 AGGGTGTTTCGATAATTTCACAAATTGAGGGTATTTCGATAATTTTACAAATCGACGGTACTTCA
68955041 GTAATTTCACAATCGCGGGTATTTTGATAATTTTACAAATCG-GGCGTATTTCAGTAATTTTACA
66 GTAATTTCACAATCGCGGGTATTTTGATAATTTTACAAATCGAGG-GTATTTCAGTAATTTTACA
68955105 AATCG
130 AATCG
* * * * *
68955110 AGGGTGTTTCGATAATTTCACAAATTGGGGGTATTTCGATAATTTTATAAATCGAGGGTATTTTA
1 AGGGTGTTTCGATAATTTCACAAATTGAGGGTATTTCGATAATTTTACAAATCGACGGTACTTCA
68955175 GTAATTTC
66 GTAATTTC
68955183 TCTTTATTAT
Statistics
Matches: 176, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
133 2 0.01
134 114 0.65
135 59 0.34
136 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (134 bp):
AGGGTGTTTCGATAATTTCACAAATTGAGGGTATTTCGATAATTTTACAAATCGACGGTACTTCA
GTAATTTCACAATCGCGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
ATCG
Found at i:68955178 original size:81 final size:81
Alignment explanation
Indices: 68954855--68955181 Score: 390
Period size: 81 Copynumber: 4.0 Consensus size: 81
68954845 TCTTTCGATT
* * * * *
68954855 ATTTTACAAATCGGGGGTGTTTCGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTATAAAT
1 ATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
* * *
68954920 CAAGAGTATTTTGGTA
66 CGAGGGTATTTTAGTA
* * * * * *
68954936 ATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGATGGTGTTTCGGTAATTTCACAAAT
1 ATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
* *
68955001 TGAGGGTATTTTGGTA
66 CGAGGGTATTTTAGTA
* ** * *
68955017 ATTTTACAAATCGACGGTACTTC-AGTAATTTCAC-AATCGCGGGTATTTTGATAATTTTACAAA
1 ATTTTACAAATCGAGGGTGTTTCGA-TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAA
*
68955080 TCG-GGCGTATTTCAGTA
65 TCGAGG-GTATTTTAGTA
* * *
68955097 ATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATTGGGGGTATTTCGATAATTTTATAAAT
1 ATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
68955162 CGAGGGTATTTTAGTA
66 CGAGGGTATTTTAGTA
68955178 ATTT
1 ATTT
68955182 CTCTTTATTA
Statistics
Matches: 209, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.01
80 63 0.30
81 142 0.68
82 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
ATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAAT
CGAGGGTATTTTAGTA
Found at i:68955529 original size:28 final size:28
Alignment explanation
Indices: 68955497--68955560 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
68955487 TGGCCCCTTT
* * *
68955497 AGGCCCAATCTCGTTCACATGGGCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* *
68955525 AGGCCCAATCACATTCATATGGCCCATT
1 AGGCCCAATCACATTCACATGGCCCATC
68955553 AGGCCCAA
1 AGGCCCAA
68955561 CTACTTCCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:68958498 original size:54 final size:54
Alignment explanation
Indices: 68958435--68958657 Score: 154
Period size: 53 Copynumber: 4.2 Consensus size: 54
68958425 AGGATACATG
* *
68958435 GGTA-CCTTTCTTTATTAAACTTACCATTGCCATGTCTTGACATGGTCTTACGT
1 GGTATCCTTTCCTTATTAAACTTACCAATGCCATGTCTTGACATGGTCTTACGT
* * ** * *
68958488 GGTATCCTTTCCTTA-TGAACTCACCGTTGCCATG-CATCGGCATGGTCTTACGT
1 GGTATCCTTTCCTTATTAAACTTACCAATGCCATGTC-TTGACATGGTCTTACGT
* ** * *
68958541 GAG-A-ACTTTGCCTTATCGT-AGTTTATCAATGCCAT-TCTTGACATGGTCTTACAT
1 G-GTATCCTTT-CCTTAT--TAAACTTACCAATGCCATGTCTTGACATGGTCTTACGT
* * * * * * * * *
68958595 GATTTCGTTGCCTTGTAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTT
1 GGTATCCTTTCCTTATTAAACTTACCAATGCCATGTCTTGACATGGTCTTACGT
68958649 GGTATCCTT
1 GGTATCCTT
68958658 AAACCTTAAT
Statistics
Matches: 126, Mismatches: 32, Indels: 23
0.70 0.18 0.13
Matches are distributed among these distances:
52 5 0.04
53 55 0.44
54 52 0.41
55 13 0.10
56 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
GGTATCCTTTCCTTATTAAACTTACCAATGCCATGTCTTGACATGGTCTTACGT
Found at i:68967964 original size:64 final size:64
Alignment explanation
Indices: 68967883--68968065 Score: 210
Period size: 67 Copynumber: 2.8 Consensus size: 64
68967873 AGACATTATG
* * *
68967883 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
68967947 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
68968012 AA
63 AA
* * *
68968014 AT-TGGCTAGGTCACATGGGTGGTACTA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
68968066 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
61 1 0.01
62 19 0.19
63 1 0.01
64 24 0.24
66 22 0.22
67 32 0.32
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:68981460 original size:24 final size:24
Alignment explanation
Indices: 68981428--68981562 Score: 132
Period size: 24 Copynumber: 5.6 Consensus size: 24
68981418 TCTTACTCAT
*
68981428 TCGCACACATAGTGTCATGTTGCC
1 TCGCACACATAGTGTCATGTAGCC
*
68981452 TCGCACACATAGTGTCATGTTGCC
1 TCGCACACATAGTGTCATGTAGCC
* **
68981476 TCGCACACATAGTG-CTATATAATC
1 TCGCACACATAGTGTC-ATGTAGCC
* **
68981500 TCGCACACATAGTGCCATGTAGTTT
1 TCGCACACATAGTGTCATGTAG-CC
*
68981525 TCGCACACATAGTG-C-TGCATAACC
1 TCGCACACATAGTGTCATG--TAGCC
68981549 TCGCACACATAGTG
1 TCGCACACATAGTG
68981563 CTGAAATTTC
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.03
24 75 0.78
25 18 0.19
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGTCATGTAGCC
Found at i:68981488 original size:48 final size:49
Alignment explanation
Indices: 68981428--68981563 Score: 159
Period size: 48 Copynumber: 2.8 Consensus size: 49
68981418 TCTTACTCAT
* ** * *
68981428 TCGCACACATAGTG-TCATGTTGCCTCGCACACATAGTGTCATGTTG-CC
1 TCGCACACATAGTGCT-ATATAACCTCGCACACATAGTGCCATGTAGTCC
* **
68981476 TCGCACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTT
1 TCGCACACATAGTGCTATATAACCTCGCACACATAGTGCCATGTAGTCC
**
68981525 TCGCACACATAGTGCTGCATAACCTCGCACACATAGTGC
1 TCGCACACATAGTGCTATATAACCTCGCACACATAGTGC
68981564 TGAAATTTCT
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
48 38 0.51
49 37 0.49
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (49 bp):
TCGCACACATAGTGCTATATAACCTCGCACACATAGTGCCATGTAGTCC
Found at i:68981529 original size:73 final size:71
Alignment explanation
Indices: 68981404--68981564 Score: 182
Period size: 73 Copynumber: 2.2 Consensus size: 71
68981394 TTTAAAGGTC
* * * *
68981404 CGCACACATAGTGCTCTTACTCATTCGCACACATAGTGTCATGTTGCCTCGCACACATAGTGTCA
1 CGCACACATAGTGCTATTAATCA-TCGCACACATAGTGCCATGTAGCCTCGCACACATAGTG-C-
**
68981469 TG-TTGCCT
63 TGATAACCT
**
68981477 CGCACACATAGTGCTATATAATC-TCGCACACATAGTGCCATGTAGTTTTCGCACACATAGTGCT
1 CGCACACATAGTGCTAT-TAATCATCGCACACATAGTGCCATGTAG-CCTCGCACACATAGTGCT
68981541 GCATAACCT
64 G-ATAACCT
68981550 CGCACACATAGTGCT
1 CGCACACATAGTGCT
68981565 GAAATTTCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
71 2 0.03
72 21 0.28
73 49 0.64
74 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (71 bp):
CGCACACATAGTGCTATTAATCATCGCACACATAGTGCCATGTAGCCTCGCACACATAGTGCTGA
TAACCT
Found at i:68981552 original size:49 final size:48
Alignment explanation
Indices: 68981450--68981563 Score: 156
Period size: 49 Copynumber: 2.4 Consensus size: 48
68981440 TGTCATGTTG
* * *
68981450 CCTCGCACACATAGTGTCATGTTGCCTCGCACACATAGTGCTATATAA
1 CCTCGCACACATAGTGCCATGTAGCCTCGCACACATAGTGCTACATAA
* ** *
68981498 TCTCGCACACATAGTGCCATGTAGTTTTCGCACACATAGTGCTGCATAA
1 CCTCGCACACATAGTGCCATGTAG-CCTCGCACACATAGTGCTACATAA
68981547 CCTCGCACACATAGTGC
1 CCTCGCACACATAGTGC
68981564 TGAAATTTCT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
48 21 0.37
49 36 0.63
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CCTCGCACACATAGTGCCATGTAGCCTCGCACACATAGTGCTACATAA
Found at i:68984223 original size:15 final size:15
Alignment explanation
Indices: 68984194--68984249 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
68984184 GAGATGACAT
*
68984194 GAAAGCCAAGATAAA
1 GAAATCCAAGATAAA
* *
68984209 GAAGTCCACGATAAA
1 GAAATCCAAGATAAA
68984224 GAAATCCAAGATAAA
1 GAAATCCAAGATAAA
68984239 GAAATCCAAGA
1 GAAATCCAAGA
68984250 AACAATATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.55, C:0.16, G:0.18, T:0.11
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:68989132 original size:29 final size:28
Alignment explanation
Indices: 68989098--68989200 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
68989088 TAATCGATCA
*
68989098 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
68989127 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
68989156 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
68989185 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68989201 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:68996012 original size:12 final size:12
Alignment explanation
Indices: 68995997--68996030 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
68995987 TCACTTACTC
68995997 ACTTACTTAAAT
1 ACTTACTTAAAT
68996009 ACTTACTTAAAT
1 ACTTACTTAAAT
68996021 ACTTACTTAA
1 ACTTACTTAA
68996031 TCAAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (12 bp):
ACTTACTTAAAT
Found at i:69000682 original size:49 final size:49
Alignment explanation
Indices: 69000629--69000902 Score: 385
Period size: 49 Copynumber: 5.7 Consensus size: 49
69000619 GATTCTACGC
* *
69000629 GATGAATGTGAAAGTGTATAAATATGAGATAAGGCCTAATGGTCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* *
69000678 GATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* *
69000727 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* *
69000776 GATGAATGTGAAAGCGTATAGATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
69000825 GATGAATGTGAAAGTGTAT--ATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* *
69000872 GATGGATGTGAAAGTATAT-AA-ATGTGATAAG
1 GATGAATGTGAAAGTGTATAAATATGTGATAAG
69000903 TCCCGAAGGG
Statistics
Matches: 207, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 49 0.24
48 1 0.00
49 157 0.76
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
Done.