Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 231 of 770
Found at i:69336356 original size:15 final size:16
Alignment explanation
Indices: 69336317--69336361 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
69336307 GTGGAATGGG
69336317 TTTACAAAAACAAAGA
1 TTTACAAAAACAAAGA
*
69336333 TTTTCAAAAACAAA-A
1 TTTACAAAAACAAAGA
69336348 TTTA-AAAAA-AAAGA
1 TTTACAAAAACAAAGA
69336362 AAAAAACTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 3 0.12
14 6 0.23
15 4 0.15
16 13 0.50
ACGTcount: A:0.64, C:0.09, G:0.04, T:0.22
Consensus pattern (16 bp):
TTTACAAAAACAAAGA
Found at i:69339413 original size:37 final size:37
Alignment explanation
Indices: 69339363--69339475 Score: 190
Period size: 37 Copynumber: 3.1 Consensus size: 37
69339353 CTTTAGCTCA
* *
69339363 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
69339400 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
69339437 GACATAATCCCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
69339474 GA
1 GA
69339476 ATATATTTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:69339763 original size:47 final size:47
Alignment explanation
Indices: 69339680--69339873 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
69339670 TATATATATT
* * * *
69339680 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * * *
69339727 TCACATTGGTCATTCGGCCTTATCACACACACGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69339774 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
69339821 TCACATTGGCCATTCGGCCTTATCACGTATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69339868 TCACAT
1 TCACAT
69339874 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:69339800 original size:22 final size:22
Alignment explanation
Indices: 69339773--69339846 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
69339763 GCTCACATTC
69339773 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
69339795 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
69339819 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
69339842 ATCAC
1 ATCAC
69339847 GTATATGCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 15 0.38
23 7 0.18
24 7 0.18
25 10 0.26
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:69346937 original size:39 final size:39
Alignment explanation
Indices: 69346878--69347030 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
69346868 AAATGTTCGA
* *
69346878 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
69346917 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
69346956 ATGATATCCGGGCTAAGCCCAAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
69346995 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
69347031 GGTTACCATA
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 87 0.84
40 16 0.16
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:69347046 original size:40 final size:39
Alignment explanation
Indices: 69346879--69347061 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
69346869 AATGTTCGAG
* * *
69346879 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
69346918 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
69346957 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
69346996 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
69347036 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
69347062 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 86 0.68
40 40 0.32
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:69357460 original size:40 final size:40
Alignment explanation
Indices: 69357264--69357489 Score: 217
Period size: 40 Copynumber: 5.7 Consensus size: 40
69357254 AGAAATTGAA
* * *
69357264 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCG
* * * * * *
69357305 T-ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
* * * * *
69357344 CT-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
**
69357384 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
69357424 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
* * *
69357464 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
69357490 CTTGGTGCGG
Statistics
Matches: 154, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
37 4 0.03
38 2 0.01
39 3 0.02
40 144 0.94
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
Found at i:69357498 original size:120 final size:120
Alignment explanation
Indices: 69357267--69357498 Score: 265
Period size: 120 Copynumber: 1.9 Consensus size: 120
69357257 AATTGAATGA
* * *
69357267 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAACCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAATTATAACCGGGCTAAGACCCGAAGGCAA
* * *
69357332 TTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
66 TTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
* *
69357387 TATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGTGATATCCGGGCTAAGACCCGAAGG
1 TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAAT--T-ATAACCGGGCTAAGACCCGAAGG
* * * * * * *
69357449 CATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCG
63 CAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTCGTGCG
69357499 GGTTACCATA
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
117 6 0.06
118 2 0.02
119 5 0.05
120 80 0.86
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (120 bp):
TATCCGGGCTAAGACCCGAAGACAATTATGCTGCAAATTATAACCGGGCTAAGACCCGAAGGCAA
TTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
Found at i:69361269 original size:38 final size:38
Alignment explanation
Indices: 69361227--69361301 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
69361217 GAATCGAGTT
*
69361227 TAAAGACCCGCTGACTATATGA-AGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATAT-ACAGAGATTATGTCCGGG
* *
69361265 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATACAGAGATTATGTCCGG
69361302 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATACAGAGATTATGTCCGGG
Found at i:69361414 original size:40 final size:40
Alignment explanation
Indices: 69361359--69361662 Score: 446
Period size: 40 Copynumber: 7.6 Consensus size: 40
69361349 CTCGACGATG
* *
69361359 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
69361399 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * *
69361439 ATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
69361479 ATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
69361519 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
69361559 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* ** * ** *
69361599 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
69361639 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
69361663 ATCATGCTGG
Statistics
Matches: 238, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 238 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:69364905 original size:47 final size:47
Alignment explanation
Indices: 69364834--69365551 Score: 1048
Period size: 47 Copynumber: 15.3 Consensus size: 47
69364824 ACAAGATATG
* *
69364834 TATATGTGATAAGGCCG-GATGGCCAATGTAATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAG-TGGCCAATGTGATGAATGTGAAAGTGTA
* *
69364881 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
* **
69364928 TATATGTGATAAGGCCGAATGGAAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
*
69364975 TATATGTGATAAGGCCG-GATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAG-TGGCCAATGTGATGAATGTGAAAGTGTA
* *
69365022 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
* * **
69365069 TATATGTGATGAGGCCGAATGGAAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
*
69365116 TATATGTGATAAGGCCG-GATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAG-TGGCCAATGTGATGAATGTGAAAGTGTA
* *
69365163 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
*
69365210 TATATGTGATAAGGCCG-GATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAG-TGGCCAATGTGATGAATGTGAAAGTGTA
* * *
69365257 TATATGTGATAGGGCCGAGCGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
* *
69365304 TATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
69365351 TATATGTGATAGGGCCTAGCGGCCAATGTGATGAATATGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
*
69365398 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
69365445 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
* * *
69365492 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAATTGTA
1 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
*
69365539 TAAATGTGATAAG
1 TATATGTGATAAG
69365552 TCCCGAAGGG
Statistics
Matches: 602, Mismatches: 62, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.00
47 597 0.99
48 4 0.01
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:69370921 original size:27 final size:27
Alignment explanation
Indices: 69370883--69371010 Score: 193
Period size: 27 Copynumber: 4.7 Consensus size: 27
69370873 CGTACCTGGA
*
69370883 CCCTCATATGATAAAATGACGATTTTG
1 CCCTTATATGATAAAATGACGATTTTG
*
69370910 CCCTTATGTGATAAAATGACGATTTTG
1 CCCTTATATGATAAAATGACGATTTTG
* *
69370937 CCCTTATATGTTAAAATGACAATTTTG
1 CCCTTATATGATAAAATGACGATTTTG
*
69370964 CCCTTATATGATAAAATGATGATTTTG
1 CCCTTATATGATAAAATGACGATTTTG
*
69370991 CCCTTATTTTGATAAAATGA
1 CCCTTA-TATGATAAAATGA
69371011 TCAAACTACC
Statistics
Matches: 91, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 79 0.87
28 12 0.13
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (27 bp):
CCCTTATATGATAAAATGACGATTTTG
Found at i:69371036 original size:55 final size:54
Alignment explanation
Indices: 69370883--69371038 Score: 136
Period size: 54 Copynumber: 2.9 Consensus size: 54
69370873 CGTACCTGGA
* * ** * *
69370883 CCCTCATATGATAAAATGACGATTTTGCCCTTAT-GTGATAAAATGACGATTTTG
1 CCCTTATATGATAAAATGACAATACTACCCCTATAG-GATAAAATGACGATTTTG
* ** * * * *
69370937 CCCTTATATGTTAAAATGACAATTTTGCCCTTATATGATAAAATGATGATTTTG
1 CCCTTATATGATAAAATGACAATACTACCCCTATAGGATAAAATGACGATTTTG
* *
69370991 CCCTTATTTTGATAAAATGATCAA-ACTACCCCTATAGGGTAAAATGAC
1 CCCTTA-TATGATAAAATGA-CAATACTACCCCTATAGGATAAAATGAC
69371039 CGAAATACCC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
54 54 0.64
55 28 0.33
56 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (54 bp):
CCCTTATATGATAAAATGACAATACTACCCCTATAGGATAAAATGACGATTTTG
Found at i:69371047 original size:27 final size:27
Alignment explanation
Indices: 69371003--69371092 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
69370993 CTTATTTTGA
*
69371003 TAAAATGATC-AAACTACCCCTATAGGG
1 TAAAATGACCGAAA-TACCCCTATAGGG
*
69371030 TAAAATGACCGAAATACCCTTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * **
69371057 TAGAATGATCGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
69371084 TAAAATGAC
1 TAAAATGAC
69371093 TGTGTTAACT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 50 0.94
28 3 0.06
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCTATAGGG
Found at i:69371053 original size:82 final size:80
Alignment explanation
Indices: 69370882--69371053 Score: 177
Period size: 82 Copynumber: 2.1 Consensus size: 80
69370872 GCGTACCTGG
* *** * * *
69370882 ACCCTCATATGATAAAATGACGATTTTGCCCTTATGTGATAAAATGACGATTTTGCCCTTATATG
1 ACCCTTATATGATAAAATGACGATTTTGCCCTTATGTGATAAAATGACGAAACTACCCCTATAGG
* *
69370947 TTAAAATGACAATTTT
66 GTAAAATGACAA-TAT
* * *
69370963 GCCCTTATATGATAAAATGATGATTTTGCCCTTATTTTGATAAAATGATC-AAACTACCCCTATA
1 ACCCTTATATGATAAAATGACGATTTTGCCCTTA-TGTGATAAAATGA-CGAAACTACCCCTATA
69371027 GGGTAAAATGACCGAA-AT
64 GGGTAAAATGA-C-AATAT
69371045 ACCCTTATA
1 ACCCTTATA
69371054 GGGTAGAATG
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
81 31 0.42
82 39 0.53
83 2 0.03
84 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.34
Consensus pattern (80 bp):
ACCCTTATATGATAAAATGACGATTTTGCCCTTATGTGATAAAATGACGAAACTACCCCTATAGG
GTAAAATGACAATAT
Found at i:69371197 original size:23 final size:23
Alignment explanation
Indices: 69371154--69371203 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
69371144 CTGTATTTGA
69371154 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
69371177 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
69371200 GCAT
1 GCAT
69371204 TGCATGGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:69371549 original size:34 final size:34
Alignment explanation
Indices: 69371510--69371603 Score: 134
Period size: 34 Copynumber: 2.8 Consensus size: 34
69371500 GTGCACTGAT
*
69371510 TACTATTACTAAAATGGGCTAAAGCCCAGATTGC
1 TACTATTACTAAAATGGGCTAAAGCCCAGACTGC
* *
69371544 TACTATTACTGAAATGGGCTAAGGCCCAGACTGC
1 TACTATTACTAAAATGGGCTAAAGCCCAGACTGC
* * *
69371578 TACTGTTACTAATATGGGCTTAAGCC
1 TACTATTACTAAAATGGGCTAAAGCC
69371604 TAAAATGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (34 bp):
TACTATTACTAAAATGGGCTAAAGCCCAGACTGC
Found at i:69373266 original size:84 final size:83
Alignment explanation
Indices: 69373111--69373269 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 83
69373101 CACATATATC
* * * * *
69373111 ATACAATGCCAACGTCCCAGACGTGGTCTTATATGCAATCACATCTCGATGCCACTGTCCCAGAT
1 ATACAATGCCAACGTCCCAAACATGGTCTTACACGCAATCACATATCGATGCCACTGTCCCA-AT
69373176 AGGGTCTTACATGAATCAA
65 AGGGTCTTACATGAATCAA
* *
69373195 ATACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCACATATCGATGCCAAC-GTCCC-AT
1 ATACAATGCCAACGTCCCAAACATGGTCTTACACGCAATCACATATCGATGCC-ACTGTCCCAAT
69373258 ACGTGGTCTTAC
65 A-G-GGTCTTAC
69373270 TCGAGAACAC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
82 3 0.05
83 1 0.02
84 59 0.91
85 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (83 bp):
ATACAATGCCAACGTCCCAAACATGGTCTTACACGCAATCACATATCGATGCCACTGTCCCAATA
GGGTCTTACATGAATCAA
Found at i:69373281 original size:43 final size:43
Alignment explanation
Indices: 69373116--69373283 Score: 119
Period size: 43 Copynumber: 4.0 Consensus size: 43
69373106 ATATCATACA
* * * * * * *
69373116 ATGCCAACGTCCCAGACGTGGTCTTATATGCAATCACATCTCG
1 ATGCCAACGTCCCAAACATGGTCTTACACGTAAACACATATCG
* * * * * * *
69373159 ATGCC-ACTGTCCCAGATAGGGTCTTACATG-AATCAAATA-CA
1 ATGCCAAC-GTCCCAAACATGGTCTTACACGTAAACACATATCG
* *
69373200 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAAACATGGTCTTACACGTAAACACATATCG
* * *
69373243 ATGCCAACGTCCCATACGTGGTCTTACTCG-AGAACACATAT
1 ATGCCAACGTCCCAAACATGGTCTTACACGTA-AACACATAT
69373284 TAGAAATCCT
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
41 24 0.24
42 19 0.19
43 58 0.57
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACATGGTCTTACACGTAAACACATATCG
Found at i:69387296 original size:153 final size:154
Alignment explanation
Indices: 69387018--69387325 Score: 609
Period size: 153 Copynumber: 2.0 Consensus size: 154
69387008 ATTGAGAATT
69387018 GAAAAGACTGATAATGTTATAGCATGTATTATGTATGACTTGGTACAGATATTGGCTGAAATGGT
1 GAAAAGACTGATAATGTTATAGCATGTATTATGTATGACTTGGTACAGATATTGGCTGAAATGGT
69387083 TGTGCATATATGTTTGGTTTGGTGTTTGTAGGTTGACCCTAATTGGGGTGGCAAATTGGCTATTC
66 TGTGCATATATGTTTGGTTTGGTGTTTGTAGGTTGACCCTAATTGGGGTGGCAAATTGGCTATTC
69387148 AAAT-GCCTCTTTTTGTTCACACA
131 AAATGGCCTCTTTTTGTTCACACA
69387171 GAAAAGACTGATAATGTTATAGCATGTATTATGTATGACTTGGTACAGATATTGGCTGAAATGGT
1 GAAAAGACTGATAATGTTATAGCATGTATTATGTATGACTTGGTACAGATATTGGCTGAAATGGT
69387236 TGTGCATATATGTTTGGTTTGGTGTTTGTAGGTTGACCCTAATTGGGGTGGCAAATTGGCTATTC
66 TGTGCATATATGTTTGGTTTGGTGTTTGTAGGTTGACCCTAATTGGGGTGGCAAATTGGCTATTC
69387301 AAATGGCCTCTTTTTGTTCACACA
131 AAATGGCCTCTTTTTGTTCACACA
69387325 G
1 G
69387326 GTAGAGACAG
Statistics
Matches: 154, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
153 134 0.87
154 20 0.13
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (154 bp):
GAAAAGACTGATAATGTTATAGCATGTATTATGTATGACTTGGTACAGATATTGGCTGAAATGGT
TGTGCATATATGTTTGGTTTGGTGTTTGTAGGTTGACCCTAATTGGGGTGGCAAATTGGCTATTC
AAATGGCCTCTTTTTGTTCACACA
Found at i:69389632 original size:16 final size:16
Alignment explanation
Indices: 69389613--69389643 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69389603 CTTCTTCACT
69389613 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
69389629 TACTTACTTACTTAA
1 TACTCACTTACTTAA
69389644 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:69389649 original size:20 final size:20
Alignment explanation
Indices: 69389610--69389649 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69389600 AAACTTCTTC
* *
69389610 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
69389630 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
69389650 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:69389759 original size:23 final size:24
Alignment explanation
Indices: 69389721--69389765 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
69389711 TTTGCTCTTC
*
69389721 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
69389745 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
69389766 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:69390028 original size:55 final size:53
Alignment explanation
Indices: 69389838--69390029 Score: 214
Period size: 53 Copynumber: 3.7 Consensus size: 53
69389828 ACATGGGTAC
* * * * *
69389838 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTATCCTTT---TTA--AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATGAA
* * *
69389887 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTATGAA
* * *
69389940 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTAT-G-AA
*
69389995 CTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG
69390030 ATTTCCTTAC
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
48 4 0.03
49 35 0.29
51 3 0.02
53 46 0.38
54 1 0.01
55 33 0.27
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTATGAA
Found at i:69390043 original size:55 final size:54
Alignment explanation
Indices: 69389838--69390093 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 54
69389828 ACATGGGTAC
* * * *
69389838 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-TA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
* * * *
69389887 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
* * * *
69389940 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTACCTTATAG-AA
* * * * *
69389995 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
* *
69390048 CCTTAACAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTA
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTTA
69390094 AACCCTAATG
Statistics
Matches: 172, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 39 0.23
52 3 0.02
53 47 0.27
54 8 0.05
55 73 0.42
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTATAGAA
Found at i:69390043 original size:108 final size:110
Alignment explanation
Indices: 69389885--69390085 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
69389875 ATCCTTTTTA
* * * * *
69389885 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTA-GAAACCTCAACAA
69389948 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
69389993 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTAGAAACCTTAACAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTCAACAAT
69390058 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
69390086 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 6 0.07
110 28 0.34
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTCAACAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:69397828 original size:55 final size:52
Alignment explanation
Indices: 69397690--69397834 Score: 148
Period size: 53 Copynumber: 2.7 Consensus size: 52
69397680 ATCCTTTTGA
* * * *
69397690 AACTTACCATTGCGATGTCTTGACATGGTCTTACGTGGTATCCATCCCTTATG
1 AACTTA-CAATGCCATGTCTTGACATGGTCTTACATGGGATCCATCCCTTATG
* * * * *
69397743 AACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTAC-AATGCCATGTCTTGACATGGTCTTACATGGGATCC-ATCCCTTAT-G
69397797 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 -AACTTA-CAATGCCATGTCTTGACATGGTCTTACATG
69397835 ATTTTCTTGC
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
52 3 0.04
53 38 0.51
54 1 0.01
55 32 0.43
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (52 bp):
AACTTACAATGCCATGTCTTGACATGGTCTTACATGGGATCCATCCCTTATG
Found at i:69397845 original size:55 final size:54
Alignment explanation
Indices: 69397690--69397889 Score: 163
Period size: 55 Copynumber: 3.7 Consensus size: 54
69397680 ATCCTTTTGA
* * * * * * * *
69397690 AACTTACCATTGCGATGTCTTGACATGGTCTTACGTGGTATCCATCCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATTCTTGCCTTATAG
* * * ** *
69397743 AACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATTC-TTGCCTTATAG
* * * *
69397797 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATTCTTGCCTTATAG
* *
69397851 AACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATG
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATG
69397890 GTATCCTTAA
Statistics
Matches: 117, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
52 2 0.02
53 41 0.35
54 8 0.07
55 65 0.56
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATTCTTGCCTTATAG
Found at i:69397848 original size:108 final size:110
Alignment explanation
Indices: 69397690--69397890 Score: 264
Period size: 108 Copynumber: 1.8 Consensus size: 110
69397680 ATCCTTTTGA
* * * * *
69397690 AACTTACCATTGCGATGTCTTGACATGGTCTTACGTGGTATCCATCCCTTATG-AA-CTCACTAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCATCCCTTA-GAAACCTCACCAA
69397753 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * * * *
69397798 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCATCCCTTAGAAACCTCACCAAT
*
69397863 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
69397891 TATCCTTAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
107 1 0.01
108 44 0.56
109 6 0.08
110 27 0.35
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCATCCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:69413848 original size:81 final size:81
Alignment explanation
Indices: 69413710--69413976 Score: 394
Period size: 81 Copynumber: 3.3 Consensus size: 81
69413700 ACAAAATTAT
*
69413710 TGAAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCTTATAGGGTAGAAATACCGAAATACCC
1 TGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCTTGTAGGGTAGAAATACCGAAATACCC
*
69413774 CTATAGGGTAGAAATAC
65 CTGTAGGGTAGAAATAC
* * * * *
69413791 TTAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTGCCGAAATACCCT
1 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCC
69413856 TGTAGGGTAGAAATAC
66 TGTAGGGTAGAAATAC
* *
69413872 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCC
1 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCC
*
69413937 TGTAGGGTAGAATTAC
66 TGTAGGGTAGAAATAC
* * *
69413953 TGAGATACCCTTGTGGGGTA-AATT
1 TGAAATACCCCTGTAGGGTAGAATT
69413977 TACCATTTTG
Statistics
Matches: 166, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 4 0.02
81 161 0.97
82 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCC
TGTAGGGTAGAAATAC
Found at i:69413965 original size:54 final size:54
Alignment explanation
Indices: 69413711--69413972 Score: 382
Period size: 54 Copynumber: 4.9 Consensus size: 54
69413701 CAAAATTATT
*
69413711 GAAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCTTGTAGGGTAGAAATACC
* * * * * * *
69413765 GAAATACCCCTATAGGGTAGAAATACTTAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACC
* * *
69413819 GAAATACCCTTGTAGGGTAGAATTGCCGAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACC
*
69413873 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACC
* *
69413927 GAAATACCCCTGTAGGGTAGAATTACTGAGATACCCTTGTGGGGTA
1 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTA
69413973 AATTTACCAT
Statistics
Matches: 184, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 183 0.99
55 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACC
Found at i:69413979 original size:27 final size:27
Alignment explanation
Indices: 69413711--69413976 Score: 327
Period size: 27 Copynumber: 9.9 Consensus size: 27
69413701 CAAAATTATT
* *
69413711 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
69413738 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * * *
69413765 GAAATACCCCTATAGGGTAGAAATACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* * * *
69413792 TAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
*
69413819 GAAATACCCTTGTAGGGTAGAATTGCC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
69413846 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
69413873 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
69413900 AAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
69413927 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
69413954 GAGATACCCTTGTGGGGTA-AATT
1 GAAATACCCTTGTAGGGTAGAATT
69413977 TACCATTTTG
Statistics
Matches: 210, Mismatches: 29, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 4 0.02
27 206 0.98
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:69414118 original size:56 final size:56
Alignment explanation
Indices: 69414032--69414138 Score: 214
Period size: 56 Copynumber: 1.9 Consensus size: 56
69414022 GGCAAGTGAC
69414032 TGACTTGGACTGTGTGGTTGACGGATTTGATTGTAAATATATGTTGGTGATACGAA
1 TGACTTGGACTGTGTGGTTGACGGATTTGATTGTAAATATATGTTGGTGATACGAA
69414088 TGACTTGGACTGTGTGGTTGACGGATTTGATTGTAAATATATGTTGGTGAT
1 TGACTTGGACTGTGTGGTTGACGGATTTGATTGTAAATATATGTTGGTGAT
69414139 TGTTTGAATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.23, C:0.07, G:0.31, T:0.39
Consensus pattern (56 bp):
TGACTTGGACTGTGTGGTTGACGGATTTGATTGTAAATATATGTTGGTGATACGAA
Found at i:69416461 original size:27 final size:27
Alignment explanation
Indices: 69416437--69416704 Score: 335
Period size: 27 Copynumber: 10.0 Consensus size: 27
69416427 CAAAATTATT
* *
69416437 GAAATACCCTTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
69416464 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
69416491 GAAATA-CCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
69416517 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
69416544 GAAATA-CCCTGTAGAGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
69416570 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
69416597 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
69416624 AAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
69416651 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
69416678 GAGATACCCTTGT-GAGGTAAAATTACC
1 GAAATACCCCTGTAG-GGTAGAATTACC
69416705 ATTTTGCCTC
Statistics
Matches: 207, Mismatches: 31, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 45 0.22
27 162 0.78
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:69416504 original size:53 final size:52
Alignment explanation
Indices: 69416437--69416690 Score: 319
Period size: 53 Copynumber: 4.7 Consensus size: 52
69416427 CAAAATTATT
*
69416437 GAAATACCCTTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCC-TGTAGGGTAGAATTA-CGAAATACCCTTGTAGGGTAGAAATACC
* * *
69416491 GAAATACCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCTGTAGGGTAGAATTAC-GAAATACCCTTGTAGGGTAGAAATACC
* * * * * *
69416544 GAAATACCCTGTAGAGTAAAAATACCGAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCTGTAGGGTAGAATTA-CGAAATACCCTTGTAGGGTAGAAATACC
* *
69416597 GAAATACCCCTATAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAATACC
1 GAAATA-CCCTGTAGGGTAGAATTAC-GAAATACCCTTGTAGGGTAGAAATACC
*
69416651 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGT
1 GAAATA-CCCTGTAGGGTAGAATTA-CGAAATACCCTTGT
69416691 GAGGTAAAAT
Statistics
Matches: 175, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
52 1 0.01
53 91 0.52
54 82 0.47
55 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (52 bp):
GAAATACCCTGTAGGGTAGAATTACGAAATACCCTTGTAGGGTAGAAATACC
Found at i:69419110 original size:40 final size:39
Alignment explanation
Indices: 69419066--69419194 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
69419056 GACTCGCTCA
*
69419066 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
69419105 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
69419145 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
69419183 GAATGCCTTCGG
1 -AATGCCTTCGG
69419195 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:69419194 original size:78 final size:80
Alignment explanation
Indices: 69419101--69419247 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
69419091 ATAGCGACTT
* * *
69419101 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
69419163 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
69419179 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
69419244 CGGA
66 CGGA
69419248 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:69419231 original size:40 final size:37
Alignment explanation
Indices: 69419082--69419247 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
69419072 TTCGGGACGA
* ** *
69419082 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
69419122 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
69419160 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
69419200 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
69419240 AGCCCGGA
1 AGCCCGGA
69419248 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:69436370 original size:18 final size:17
Alignment explanation
Indices: 69436338--69436371 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
69436328 CACAGTTCTG
69436338 CATTTCGTTAAGTGGTA
1 CATTTCGTTAAGTGGTA
*
69436355 CATTTGGTTCAAGTGGT
1 CATTTCGTT-AAGTGGT
69436372 TTACATTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.41
Consensus pattern (17 bp):
CATTTCGTTAAGTGGTA
Found at i:69436932 original size:17 final size:19
Alignment explanation
Indices: 69436910--69436946 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
69436900 TTGAGATTAA
69436910 TGGG-CCACATGGG-CGTG
1 TGGGCCCACATGGGCCGTG
69436927 TGGGCCCACATGGGCCGTG
1 TGGGCCCACATGGGCCGTG
69436946 T
1 T
69436947 TATGGGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.11, C:0.27, G:0.43, T:0.19
Consensus pattern (19 bp):
TGGGCCCACATGGGCCGTG
Found at i:69437099 original size:26 final size:25
Alignment explanation
Indices: 69437059--69437149 Score: 78
Period size: 26 Copynumber: 3.6 Consensus size: 25
69437049 CTGTACTGTC
*
69437059 AAAATGACTGTTATACCTCTAAAGGT
1 AAAATGACTGATATACC-CTAAAGGT
* *
69437085 AAAATGACTGATATACCCCT--ATGC
1 AAAATGACTGATATA-CCCTAAAGGT
* * *
69437109 AATATTTAACTGTTATACCCTAAAGGT
1 AA-A-ATGACTGATATACCCTAAAGGT
69437136 AAAATGACTGATAT
1 AAAATGACTGATAT
69437150 TATGACATGA
Statistics
Matches: 49, Mismatches: 11, Indels: 11
0.69 0.15 0.15
Matches are distributed among these distances:
24 4 0.08
25 13 0.27
26 26 0.53
27 6 0.12
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (25 bp):
AAAATGACTGATATACCCTAAAGGT
Found at i:69443033 original size:17 final size:17
Alignment explanation
Indices: 69443001--69443047 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
69442991 TTTCTTTGCT
69443001 TTAA-TTAAATCAATTAA
1 TTAATTTAAA-CAATTAA
* *
69443018 TTAGTTTAAACAATTAG
1 TTAATTTAAACAATTAA
*
69443035 TTAATTAAAACAA
1 TTAATTTAAACAA
69443048 ACCCTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.38
Consensus pattern (17 bp):
TTAATTTAAACAATTAA
Found at i:69448470 original size:7 final size:6
Alignment explanation
Indices: 69448420--69448480 Score: 54
Period size: 6 Copynumber: 10.5 Consensus size: 6
69448410 CTCATCCTAT
* * * * *
69448420 TTTTTA TTCTTG TTTTTA -TTTTA -TTTTA TTTTTC TTTTTC TTTTGA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
69448466 TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTT
69448481 CAATTTTATT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 10 0.22
6 35 0.78
ACGTcount: A:0.11, C:0.07, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:69448476 original size:17 final size:16
Alignment explanation
Indices: 69448432--69448490 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
69448422 TTTATTCTTG
*
69448432 TTTTTATTTTATTTTA
1 TTTTTATTTTCTTTTA
*
69448448 TTTTTCTTTTTCTTTTGA
1 TTTTT-ATTTTCTTTT-A
*
69448466 TTTTTATTTTCATTTCA
1 TTTTTATTTTC-TTTTA
*
69448483 ATTTTATT
1 TTTTTATT
69448491 ATTTTATTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 5 0.14
17 21 0.60
18 9 0.26
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTCTTTTA
Found at i:69451558 original size:40 final size:40
Alignment explanation
Indices: 69451513--69451642 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
69451503 CGGAATATAA
69451513 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69451553 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
69451593 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
69451633 CCGGATATAA
1 CCGGATATAA
69451643 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69451657 original size:40 final size:39
Alignment explanation
Indices: 69451529--69451679 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
69451519 ATAACCATGT
* * *
69451529 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
69451569 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
69451609 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
69451648 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
69451680 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:69451663 original size:80 final size:79
Alignment explanation
Indices: 69451513--69451679 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
69451503 CGGAATATAA
*
69451513 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
69451578 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
69451593 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
69451655 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
69451672 CCGGATAT
1 CCGGATAT
69451680 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:69473950 original size:25 final size:25
Alignment explanation
Indices: 69473918--69473965 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69473908 CTATAACATG
* * *
69473918 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
69473943 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
69473966 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:69474049 original size:11 final size:11
Alignment explanation
Indices: 69474013--69474068 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
69474003 CATGGTATGT
69474013 ATGATATGCAC
1 ATGATATGCAC
* *
69474024 ATGACATG--T
1 ATGATATGCAC
69474033 ATGATATGCAC
1 ATGATATGCAC
*
69474044 ATGATATG--T
1 ATGATATGCAC
69474053 ATGATATGCAC
1 ATGATATGCAC
69474064 ATGAT
1 ATGAT
69474069 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69474068 original size:20 final size:20
Alignment explanation
Indices: 69474002--69474068 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
69473992 ATTTTGATAA
*
69474002 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
69474022 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
69474042 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69474062 ACATGAT
1 ACATGAT
69474069 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69474164 original size:24 final size:24
Alignment explanation
Indices: 69474111--69474236 Score: 202
Period size: 24 Copynumber: 5.3 Consensus size: 24
69474101 TGAATGGAGG
*
69474111 AAGGGCTTATGCCCCAGTTA-AAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
69474134 AAGGGCTTATGCCCCAGTTATCAA
1 AAGGGCTTATGCCCCAGTTATTAA
69474158 AAGGGCTTATGCCCCAGTTATT-A
1 AAGGGCTTATGCCCCAGTTATTAA
69474181 AAGGGCTTATGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
69474205 AAGGGCTTTTGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
69474229 AAGAGGCT
1 AAG-GGCT
69474237 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
23 43 0.44
24 50 0.52
25 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAGGGCTTATGCCCCAGTTATTAA
Found at i:69474184 original size:47 final size:47
Alignment explanation
Indices: 69474111--69474229 Score: 202
Period size: 47 Copynumber: 2.5 Consensus size: 47
69474101 TGAATGGAGG
**
69474111 AAGGGCTTATGCCCCAGTTAAAAAAGGGCTTATGCCCCAGTTATCAA
1 AAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAA
*
69474158 AAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAA
*
69474205 AAGGGCTTTTGCCCCAGTTATTAAA
1 AAGGGCTTATGCCCCAGTTATTAAA
69474230 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAA
Found at i:69474478 original size:31 final size:31
Alignment explanation
Indices: 69474443--69474503 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
69474433 CGTTTACAGT
69474443 AAAGGCTTCGGCCCAGTAATATGAAATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
69474474 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
69474504 AAATATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:69480940 original size:17 final size:18
Alignment explanation
Indices: 69480918--69480951 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
69480908 ACTTGAGTTA
69480918 ATTATTATAA-TTTAAAC
1 ATTATTATAACTTTAAAC
*
69480935 ATTATTTTAACTTTAAA
1 ATTATTATAACTTTAAA
69480952 ATCACCATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTATTATAACTTTAAAC
Found at i:69489342 original size:34 final size:34
Alignment explanation
Indices: 69489250--69489389 Score: 165
Period size: 34 Copynumber: 4.0 Consensus size: 34
69489240 TACCTATAAG
* *
69489250 ATCGAATAAACAAGGTTCAATATATCATCACATAT
1 ATCGAATATACAA-ATTCAATATATCATCACATAT
** * *
69489285 GGCTGATTATACAAAATTCAATATATCCTCACATAT
1 ATC-GAATATAC-AAATTCAATATATCATCACATAT
69489321 AATCGAATATAC-AATTCAATATATCATCACATAT
1 -ATCGAATATACAAATTCAATATATCATCACATAT
*
69489355 GATCGAATATACGAATTCAATATATCATCACATAT
1 -ATCGAATATACAAATTCAATATATCATCACATAT
69489390 GGCCGATTAT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
34 32 0.36
35 23 0.26
36 32 0.36
37 3 0.03
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (34 bp):
ATCGAATATACAAATTCAATATATCATCACATAT
Found at i:69489348 original size:70 final size:70
Alignment explanation
Indices: 69489250--69489389 Score: 194
Period size: 70 Copynumber: 2.0 Consensus size: 70
69489240 TACCTATAAG
* * *
69489250 ATCGAATAAACAAGGTTCAATATATCATCACATATG-GCTGATTATACAAAATTCAATATATCCT
1 ATCGAATAAACAA-GTTCAATATATCATCACATATGATC-GAATATAC-AAATTCAATATATCAT
69489314 CACATATA
63 CACATATA
* *
69489322 ATCGAATATACAA-TTCAATATATCATCACATATGATCGAATATACGAATTCAATATATCATCAC
1 ATCGAATAAACAAGTTCAATATATCATCACATATGATCGAATATACAAATTCAATATATCATCAC
69489386 ATAT
66 ATAT
69489390 GGCCGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
69 21 0.34
70 28 0.45
71 1 0.02
72 12 0.19
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (70 bp):
ATCGAATAAACAAGTTCAATATATCATCACATATGATCGAATATACAAATTCAATATATCATCAC
ATATA
Found at i:69489401 original size:69 final size:70
Alignment explanation
Indices: 69489265--69489403 Score: 183
Period size: 69 Copynumber: 2.0 Consensus size: 70
69489255 ATAAACAAGG
* * *
69489265 TTCAATATATCATCACATATGGCTGATTATACAAAATTCAATATATCCTCACATATAATCGAATA
1 TTCAATATATCATCACATATGGCTGAATATACAAAATTCAATATATCATCACATATAACCGAATA
69489330 TACAA
66 TACAA
* * ** *
69489335 TTCAATATATCATCACATAT-GATCGAATATAC-GAATTCAATATATCATCACATATGGCCGATT
1 TTCAATATATCATCACATATGGCT-GAATATACAAAATTCAATATATCATCACATATAACCGAAT
69489398 ATACAA
65 ATACAA
69489404 GGTTCATATA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
69 33 0.55
70 27 0.45
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (70 bp):
TTCAATATATCATCACATATGGCTGAATATACAAAATTCAATATATCATCACATATAACCGAATA
TACAA
Found at i:69498075 original size:43 final size:43
Alignment explanation
Indices: 69498003--69498095 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
69497993 TCACATAAAT
**
69498003 CATA-CAATGCCAATGTCCCAAACGTGGTCTTACAT-GTAGCCA
1 CATATCAATGCCAATGTCCCAAACGTGGTCTTAC-TCGTAAACA
* *
69498045 CATATCAATGCCACTGTCCCAGACAG-GGTCTTACTCGTAAACA
1 CATATCAATGCCAATGTCCCAAAC-GTGGTCTTACTCGTAAACA
69498088 CATATCAA
1 CATATCAA
69498096 AATCACATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
42 5 0.11
43 38 0.86
44 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (43 bp):
CATATCAATGCCAATGTCCCAAACGTGGTCTTACTCGTAAACA
Found at i:69502570 original size:24 final size:24
Alignment explanation
Indices: 69502542--69502627 Score: 136
Period size: 24 Copynumber: 3.6 Consensus size: 24
69502532 ATGTTATGGC
* *
69502542 CAAGCCACTCAATAGCATTGTGGT
1 CAAGCCACTCAATAACGTTGTGGT
69502566 CAAGCCACTCAATAACGTTGTGGT
1 CAAGCCACTCAATAACGTTGTGGT
* *
69502590 CAAGCTACTCAATAACGTTGTGAT
1 CAAGCCACTCAATAACGTTGTGGT
69502614 CAAGCCACTCAATA
1 CAAGCCACTCAATA
69502628 TAACAGATAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (24 bp):
CAAGCCACTCAATAACGTTGTGGT
Found at i:69508383 original size:42 final size:43
Alignment explanation
Indices: 69508289--69508397 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 43
69508279 GATTTGAGAT
* * * *
69508289 TTACGTGTAAGACCATGTCTGGGACATAGGCATCGTATCTGAT
1 TTACATGTAAGACCATGTCTGGGACAGAGGCATCATATCTGAA
** * *
69508332 TTTGA-GTAAGACCCTGTCTGGGATAGAGGCATCATA-CTGAA
1 TTACATGTAAGACCATGTCTGGGACAGAGGCATCATATCTGAA
* *
69508373 TTACATGTAAGACCACGTCCGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
69508398 GTCGGCATTG
Statistics
Matches: 51, Mismatches: 14, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
41 7 0.14
42 42 0.82
43 2 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACAGAGGCATCATATCTGAA
Found at i:69509873 original size:40 final size:40
Alignment explanation
Indices: 69509800--69510020 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
69509790 CAAACCCAAA
* *
69509800 CCTTC-GGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
69509838 CCTTTGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
69509878 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
69509918 CCTTCGGGACTTAGCTCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
69509958 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCCCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
69509998 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
69510021 CATTCGAATA
Statistics
Matches: 171, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 4 0.02
39 6 0.04
40 158 0.92
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:69513796 original size:78 final size:80
Alignment explanation
Indices: 69513663--69513843 Score: 221
Period size: 78 Copynumber: 2.3 Consensus size: 80
69513653 TCGAATGATG
* *
69513663 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGATCCGAAGGCATTCG
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAGATCCGAAGGCATTCG
*
69513727 TGCGAGTTAATA-AA
66 TGCGAGTCAATATAA
* * *
69513741 TCCGGGCTAAGCCCGAAGGCATTTGTGC-AAGTTACTAAACCCGG-TTA-AGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAGA-T-CCGAAGGCATT
*
69513803 CGTGCGAGTCACTATAA
64 CGTGCGAGTCAATATAA
**
69513820 -CCGGGCTTCGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
69513844 AGAGAGTCGT
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
76 1 0.01
77 3 0.03
78 76 0.85
79 9 0.10
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAGATCCGAAGGCATTCG
TGCGAGTCAATATAA
Found at i:69513835 original size:39 final size:38
Alignment explanation
Indices: 69513664--69513841 Score: 146
Period size: 39 Copynumber: 4.6 Consensus size: 38
69513654 CGAATGATGT
* * * * *
69513664 CCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTTAGTCCGAAGGCATTCGTGC-GAGTTACTA-AA
* *
69513703 CCGGAC-TAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTTAG-TCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
69513741 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTTAGTCCGAAGGCATTCGTGCGAGTTACTAAA
* *
69513780 CCCGG-TTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 CCGGGCTT-AGT-CCGAAGGCATTCGTGCGAGTTACTA-AA
*
69513820 CCGGGCTTCGTCCGAAGGCATT
1 CCGGGCTTAGTCCGAAGGCATT
69513842 TGAGAGAGTC
Statistics
Matches: 110, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
37 1 0.01
38 9 0.08
39 82 0.75
40 16 0.15
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (38 bp):
CCGGGCTTAGTCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:69515846 original size:93 final size:93
Alignment explanation
Indices: 69515734--69515905 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69515724 GCCCATAAGT
* *
69515734 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69515799 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69515827 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69515892 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69515906 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69515901 original size:46 final size:46
Alignment explanation
Indices: 69515726--69515901 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69515716 TGTAACCCGC
* * *
69515726 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69515772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69515822 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
69515865 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69515902 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69518329 original size:30 final size:30
Alignment explanation
Indices: 69518285--69518373 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
69518275 CAAAGATAAC
69518285 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
69518314 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
69518344 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
69518374 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:69518333 original size:15 final size:15
Alignment explanation
Indices: 69518285--69518364 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
69518275 CAAAGATAAC
*
69518285 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69518299 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
69518314 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
69518329 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
69518344 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69518359 AAGAAA
1 AAGAAA
69518365 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69518373 original size:15 final size:15
Alignment explanation
Indices: 69518296--69518373 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
69518286 AGAAAACCGA
69518296 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
69518311 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
69518325 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
69518340 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69518356 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69518371 ATA
1 ATA
69518374 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69521433 original size:93 final size:93
Alignment explanation
Indices: 69521321--69521492 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69521311 GCCCATAAGT
* *
69521321 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69521386 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69521414 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69521479 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69521493 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69521488 original size:46 final size:46
Alignment explanation
Indices: 69521313--69521488 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69521303 TGTAACCCGC
* * *
69521313 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69521359 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69521409 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
69521452 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69521489 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69527224 original size:40 final size:39
Alignment explanation
Indices: 69527160--69527348 Score: 216
Period size: 39 Copynumber: 4.8 Consensus size: 39
69527150 GCTACTCGTT
* * * ** *
69527160 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* * *
69527200 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTTTGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAAC-TCGCA
* *
69527241 CAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
69527280 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
69527319 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
69527349 CTTCGCACAT
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 70 0.53
40 45 0.34
41 16 0.12
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:69527287 original size:39 final size:39
Alignment explanation
Indices: 69527196--69527349 Score: 236
Period size: 39 Copynumber: 3.9 Consensus size: 39
69527186 TATGGTAACC
* *
69527196 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAAC-T
* * *
69527237 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
69527276 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69527315 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
69527350 TTCGCACATA
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 71 0.68
40 17 0.16
41 16 0.15
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:69527340 original size:78 final size:80
Alignment explanation
Indices: 69527196--69527348 Score: 265
Period size: 78 Copynumber: 1.9 Consensus size: 80
69527186 TATGGTAACC
*
69527196 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTTGCACAATTGCCTTCGGGCTTAGC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTCGCACAATTGCCTTCGGGCTTAGC
69527261 CCGGATATCATAGCT
66 CCGGATATCATAGCT
* *
69527276 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA-TTCGCACAATTGCCTTCGGGCTTAGC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTCGCACAATTGCCTTCGGGCTTAGC
69527339 CCGGATATCA
66 CCGGATATCA
69527349 CTTCGCACAT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
78 35 0.50
79 18 0.26
80 17 0.24
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.25
Consensus pattern (80 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTTCGCACAATTGCCTTCGGGCTTAGC
CCGGATATCATAGCT
Found at i:69533385 original size:79 final size:82
Alignment explanation
Indices: 69533245--69533429 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
69533235 TCGAATGATG
* * *
69533245 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
69533309 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
69533325 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
69533387 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
69533405 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69533430 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:69533437 original size:40 final size:40
Alignment explanation
Indices: 69533246--69533437 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
69533236 CGAATGATGT
* * * * *
69533246 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
69533286 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
69533326 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
69533365 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
69533405 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
69533438 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:69533460 original size:79 final size:79
Alignment explanation
Indices: 69533245--69533462 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
69533235 TCGAATGATG
* * * * ** *
69533245 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
69533308 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
69533325 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
69533390 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
69533405 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
69533463 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:69540849 original size:15 final size:15
Alignment explanation
Indices: 69540829--69540858 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
69540819 CACCCGAAAA
69540829 ATGACTTGTGTGAAT
1 ATGACTTGTGTGAAT
69540844 ATGACTTGTGTGAAT
1 ATGACTTGTGTGAAT
69540859 GTTTAGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
ATGACTTGTGTGAAT
Found at i:69548198 original size:40 final size:40
Alignment explanation
Indices: 69548142--69548309 Score: 177
Period size: 40 Copynumber: 4.2 Consensus size: 40
69548132 CAATTGAATG
*
69548142 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
69548183 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
69548222 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
* *
69548262 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGACTT
69548302 ATATCCGG
1 ATATCCGG
69548310 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
37 1 0.01
39 6 0.06
40 96 0.89
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:69548277 original size:80 final size:80
Alignment explanation
Indices: 69548144--69548309 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 80
69548134 ATTGAATGAT
* *
69548144 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
*
69548209 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* *
69548224 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCGGGCTAAGACCCGAAGGCA
* * *
69548287 TTTGTGCATGTGGTTAT
64 TTCGTGCAAGTGGTTAA
69548304 ATCCGG
1 ATCCGG
69548310 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.04
79 3 0.04
80 70 0.92
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:69553891 original size:93 final size:93
Alignment explanation
Indices: 69553732--69553902 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69553722 GCCCATAAGT
* * *
69553732 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
69553797 CGAGCTT-GGATGCCTAGTTACATCTCAC
66 CGAG-TTCGGATGCCTAGTTACATCTCAC
*
69553825 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
69553890 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69553903 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69553899 original size:46 final size:46
Alignment explanation
Indices: 69553724--69553899 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
69553714 CTTTACCCGC
* * *
69553724 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69553770 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA---C-A-TTCGCAT
* *
69553820 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69553863 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69553900 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69561957 original size:27 final size:27
Alignment explanation
Indices: 69561942--69562121 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
69561932 CTGAAATACA
69561942 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
69561969 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
69561996 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
69562023 C-CTGATTTACAGAATTACCGTTTTACC
1 CTC-GATTTATAGAATTACCGTTTTACC
* * *
69562050 TTCGATTTACAGAATTATCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* * *
69562077 CTTGATTTACAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
69562104 CTCGATTTACAAAATTAC
1 CTCGATTTATAGAATTAC
69562122 TAAAATACCC
Statistics
Matches: 140, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 138 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CTCGATTTATAGAATTACCGTTTTACC
Found at i:69562064 original size:81 final size:81
Alignment explanation
Indices: 69561942--69562121 Score: 281
Period size: 81 Copynumber: 2.2 Consensus size: 81
69561932 CTGAAATACA
* * *
69561942 CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATA
1 CTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACA
69562007 GAATTACCATTTTACC
66 GAATTACCATTTTACC
* * *
69562023 C-CTGATTTACAGAATTACCGTTTTACCTTCGATTTACAGAATTATCGTTTTACCCTTGATTTAC
1 CTC-GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
69562087 AGAATTACCATTTTACC
65 AGAATTACCATTTTACC
*
69562104 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
69562122 TAAAATACCC
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
80 1 0.01
81 88 0.98
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (81 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACA
GAATTACCATTTTACC
Found at i:69562130 original size:27 final size:27
Alignment explanation
Indices: 69562073--69562293 Score: 150
Period size: 27 Copynumber: 8.2 Consensus size: 27
69562063 ATTATCGTTT
* * ***
69562073 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
69562100 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
69562127 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
69562154 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * *
69562181 TACCCCTAGCTTGT--AAAATTACAAAAA
1 TA-CCCTCGATT-TACAAAATTACCAAAA
* *
69562208 TACCCTCGA-TTAGTAGAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* **
69562235 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *
69562262 TACCCCTGGCTTGT--AAAATTACCAAAA
1 TA-CCCTCGATT-TACAAAATTACCAAAA
69562289 TACCC
1 TACCC
69562294 CTGATTTGTG
Statistics
Matches: 155, Mismatches: 27, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
24 1 0.01
25 1 0.01
26 12 0.08
27 127 0.82
28 12 0.08
29 2 0.01
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:69562131 original size:54 final size:54
Alignment explanation
Indices: 69561965--69562185 Score: 201
Period size: 54 Copynumber: 4.1 Consensus size: 54
69561955 ATTACCGTTT
* * * * * ***
69561965 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAA
* * * * * ****
69562019 TACCCCTGATTTACAGAATTACCGTTTTACCTTCGATTTACAGAATTATCGTTT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAA
*
69562073 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAA
* * *** * *
69562127 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTA-CAAAATTACCAAAA
69562181 TACCC
1 TACCC
69562186 CTAGCTTGTA
Statistics
Matches: 141, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
53 2 0.01
54 139 0.99
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAA
Found at i:69562140 original size:81 final size:81
Alignment explanation
Indices: 69561965--69562149 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
69561955 ATTACCGTTT
* * *
69561965 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCCTGATT
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCCTGATT
* ****
69562030 TACAGAATTACCGTTT
66 TACAAAATTACCAAAA
* *
69562046 TA-CCTTCGATTTACAGAATTATCGTTTTACCCTTGATTTACAGAATTACCATTTTA-CCCTCGA
1 TACCCTT-GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCCT-GA
*
69562109 TTTACAAAATTACTAAAA
64 TTTACAAAATTACCAAAA
* *
69562127 TACCCTTGGTTTACAAAATTACC
1 TACCCTTGATTTACAGAATTACC
69562150 AAAATACCCT
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 7 0.08
81 76 0.87
82 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCCTGATT
TACAAAATTACCAAAA
Found at i:69562294 original size:27 final size:27
Alignment explanation
Indices: 69562114--69562402 Score: 210
Period size: 27 Copynumber: 10.7 Consensus size: 27
69562104 CTCGATTTAC
* * * **
69562114 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGATTGT
* *
69562141 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGGAT-TGT
* *
69562168 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTGGATTGT
* *
69562195 AAAATTACAAAAATA-CCCTCGATTAGT
1 AAAATTACCAAAATACCCCTGGATT-GT
* * *
69562222 AGAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGATTGT
*
69562249 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGATTGT
69562276 AAAATTACCAAAATACCCCT-GATTTGT
1 AAAATTACCAAAATACCCCTGGA-TTGT
* *** * *
69562303 GAAATTATTGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCTGGA-TTGT
* * * * **
69562330 AAAA-TATCGAAATACCCATGTAGGGT
1 AAAATTACCAAAATACCCCTGGATTGT
* * * *
69562356 AGAATTACCGAAATACCCCTGTATGGT
1 AAAATTACCAAAATACCCCTGGATTGT
* *
69562383 AGAATTACCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
69562403 ATAAGGTAGA
Statistics
Matches: 216, Mismatches: 38, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
26 30 0.14
27 173 0.80
28 13 0.06
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGATTGT
Found at i:69562309 original size:81 final size:80
Alignment explanation
Indices: 69562114--69562309 Score: 234
Period size: 81 Copynumber: 2.4 Consensus size: 80
69562104 CTCGATTTAC
* * * ** *
69562114 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACAAAAATACCCCTGATTT-GTAAATTACCAAAATACCCTAGATCAGTAAAATTACCAA
69562179 AATACCCCTAGCTTGT
65 AATACCCCTAGCTTGT
* **
69562195 AAAATTACAAAAATA-CCCTCGATTAGTAGAATTACCAAAATACCCCTAG-TTTGTAAAATTACC
1 AAAATTACAAAAATACCCCT-GATTTGTA-AATTACCAAAATA-CCCTAGATCAGTAAAATTACC
*
69562258 AAAATACCCCTGGCTTGT
63 AAAATACCCCTAGCTTGT
*
69562276 AAAATTACCAAAATACCCCTGATTTGTGAAATTA
1 AAAATTACAAAAATACCCCTGATTTGT-AAATTA
69562310 TTGAAATACT
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
80 4 0.04
81 84 0.86
82 10 0.10
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (80 bp):
AAAATTACAAAAATACCCCTGATTTGTAAATTACCAAAATACCCTAGATCAGTAAAATTACCAAA
ATACCCCTAGCTTGT
Found at i:69562318 original size:81 final size:81
Alignment explanation
Indices: 69562143--69562293 Score: 241
Period size: 81 Copynumber: 1.9 Consensus size: 81
69562133 TGGTTTACAA
* **
69562143 AATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAA
1 AATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAA
69562207 ATACCCTCGATTAGTAG
65 ATACCCTCGATTAGTAG
* *
69562224 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
69562289 TACCC
66 TACCC
69562294 CTGATTTGTG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
81 59 0.92
82 5 0.08
ACGTcount: A:0.42, C:0.25, G:0.08, T:0.25
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
TACCCTCGATTAGTAG
Found at i:69562329 original size:81 final size:80
Alignment explanation
Indices: 69562143--69562334 Score: 235
Period size: 81 Copynumber: 2.4 Consensus size: 80
69562133 TGGTTTACAA
**
69562143 AATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
1 AATTACCAAAATA-CCTCGATTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
69562208 TACCCTCGATTAGTAG
65 TACCCTCGATTAGTAG
* * * *
69562224 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAA
1 AATTACCAAAATACCTCGA-TTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
*
69562289 TACCC-CTGATTTGT-G
65 TACCCTC-GATTAGTAG
***
69562304 AAATTATTGAAATACTCTCGATTTGTAAAAT
1 -AATTACCAAAATAC-CTCGATTTGTAAAAT
69562335 ATCGAAATAC
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
80 6 0.06
81 86 0.91
82 3 0.03
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AATTACCAAAATACCTCGATTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAAT
ACCCTCGATTAGTAG
Found at i:69562330 original size:54 final size:54
Alignment explanation
Indices: 69562100--69562334 Score: 251
Period size: 54 Copynumber: 4.4 Consensus size: 54
69562090 ATTACCATTT
* * * * ** *
69562100 TACCCTCGATTTA-CAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTAGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAAA
* *
69562154 TACCCTCGATCAGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACAAAAA
1 TACCCTCGATTAGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAAA
* *
69562208 TACCCTCGATTAGTAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGATTAGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAAA
* * * ***
69562262 TACCCCTGGCTT-GTAAAATTACCAAAATACCCCT-GATTTGTGAAATTATTGAAA
1 TA-CCCTCGATTAGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACAAAAA
* *
69562316 TACTCTCGATTTGTAAAAT
1 TACCCTCGATTAGTAAAAT
69562335 ATCGAAATAC
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
53 9 0.06
54 138 0.90
55 7 0.05
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
TACCCTCGATTAGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAAA
Found at i:69562410 original size:27 final size:27
Alignment explanation
Indices: 69562337--69562499 Score: 211
Period size: 27 Copynumber: 6.0 Consensus size: 27
69562327 TGTAAAATAT
*
69562337 CGAAATACCCATGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69562364 CGAAATACCCCTGTATGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
69562391 CGAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
69562418 CGAAATAACCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
69562445 CGAAATACCCCTGTATGGTAGAATTA-
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
69562471 CAAAGATACCCTTGTGGGGTAAAATTAC
1 CGAA-ATACCCCTGTAGGGTAGAATTAC
69562499 C
1 C
69562500 ATTTTGCTCC
Statistics
Matches: 120, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 3 0.03
27 116 0.97
28 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:69562497 original size:81 final size:81
Alignment explanation
Indices: 69562328--69562499 Score: 233
Period size: 81 Copynumber: 2.1 Consensus size: 81
69562318 CTCTCGATTT
* *
69562328 GTAAAA-TATCGAAATACCCATGTAGGGTAGAATTACCGAAATACCCCTGTATGGTAGAATTACC
1 GTAAAATTACCGAAATACCCATATAGGGTAGAATTACCGAAATACCCCTGTATGGTAGAATTACC
*
69562392 GAAATACCCCTATAAG
66 AAAATACCCCTATAAG
*
69562408 GTAGAATTACCGAAATAACCC-TATAGGGTAGAATTACCGAAATACCCCTGTATGGTAGAATTA-
1 GTAAAATTACCGAAAT-ACCCATATAGGGTAGAATTACCGAAATACCCCTGTATGGTAGAATTAC
* * **
69562471 CAAAGATACCCTTGTGGG
65 CAAA-ATACCCCTATAAG
69562489 GTAAAATTACC
1 GTAAAATTACC
69562500 ATTTTGCTCC
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 8 0.10
81 68 0.85
82 4 0.05
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCATATAGGGTAGAATTACCGAAATACCCCTGTATGGTAGAATTACC
AAAATACCCCTATAAG
Found at i:69562789 original size:24 final size:25
Alignment explanation
Indices: 69562704--69562797 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
69562694 AGGAAGTGCT
*
69562704 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGAGCTTTGCCCCAGTTTACCG
*
69562729 AAAAGAGCTTTGCCCTAGTTTACCG
1 AAAAGAGCTTTGCCCCAGTTTACCG
* *
69562754 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGAGCTTTGCCCCAGTTTACCG
*
69562778 AAAAGAGTTTTGCCCCAGTT
1 AAAAGAGCTTTGCCCCAGTT
69562798 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 18 0.29
25 44 0.71
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
AAAAGAGCTTTGCCCCAGTTTACCG
Found at i:69562804 original size:23 final size:24
Alignment explanation
Indices: 69562712--69562807 Score: 104
Period size: 25 Copynumber: 4.0 Consensus size: 24
69562702 CTAAAAGGGC
* *
69562712 TTTGCCCCAGTTTACCGAAAAGAGC
1 TTTGCCCCAGTTTATC-AAAAGAGT
* * * *
69562737 TTTGCCCTAGTTTACCGAAAAGGGC
1 TTTGCCCCAGTTTATC-AAAAGAGT
69562762 TTTGCCCCAGTTTATCAAAAGAGT
1 TTTGCCCCAGTTTATCAAAAGAGT
*
69562786 TTTGCCCCAG-TTATTAAAAGAG
1 TTTGCCCCAGTTTATCAAAAGAG
69562808 GCTAGGCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
23 11 0.17
24 16 0.25
25 37 0.58
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
TTTGCCCCAGTTTATCAAAAGAGT
Found at i:69564020 original size:27 final size:27
Alignment explanation
Indices: 69563964--69564024 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
69563954 TGGGAAGTAG
***
69563964 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGG-CTGATGGGCCATATGAACAAGA
*
69563992 TTGGGCTGATGGGCCATGTGAACAAGA
1 TTGGGCTGATGGGCCATATGAACAAGA
69564019 TTGGGC
1 TTGGGC
69564025 CTAAAGGGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.26
Consensus pattern (27 bp):
TTGGGCTGATGGGCCATATGAACAAGA
Found at i:69564374 original size:27 final size:27
Alignment explanation
Indices: 69564344--69564603 Score: 260
Period size: 27 Copynumber: 9.7 Consensus size: 27
69564334 TAATAAAGAC
*
69564344 AAATTATCGAAATACCCCCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
69564371 AAATTATCGAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
*
69564397 AAATTA-CTGAAATGCCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
69564424 AAATTATTGAAATACCCCCGATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
**
69564451 AAATTA-CTGAAACGCCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
69564478 AAATTATCGAAACACCCTTGAGTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
69564505 AAATTA-CTGAAATACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
69564532 AAACTACCAAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
69564559 AAATTACCAAAATACCCT-TATAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
* *
69564586 AAATTACCAAAATACCCT
1 AAATTATCGAAATACCCT
69564604 TGTAATGTAA
Statistics
Matches: 199, Mismatches: 26, Indels: 16
0.83 0.11 0.07
Matches are distributed among these distances:
25 1 0.01
26 25 0.13
27 171 0.86
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:69564572 original size:54 final size:54
Alignment explanation
Indices: 69564344--69564630 Score: 294
Period size: 54 Copynumber: 5.3 Consensus size: 54
69564334 TAATAAAGAC
* *
69564344 AAATTA-TCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * * *
69564397 AAATTACTGAAATGCCCTCGATTTGTAAAATTATTGAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
** * * *
69564451 AAATTACTGAAACGCCCTCGATTTGTAAAATTATCGAAACACCCTTGAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * * *
69564505 AAATTACTGAAATACCCTCAATTTGTAAAACTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
** * * * * * *
69564559 AAATTACCAAAATACCCT-TATAGTGTAAAATTACCAAAATACCCTTG-TAATGTA
1 AAATTACTGAAATACCCTCGAT-TTGTAAAATTATCGAAATACCCTCGAT-TTGTA
* *
69564613 AAATGACTGACATACCCT
1 AAATTACTGAAATACCCT
69564631 TGTAGGGTAA
Statistics
Matches: 199, Mismatches: 31, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
53 45 0.23
54 154 0.77
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
Found at i:69564604 original size:27 final size:27
Alignment explanation
Indices: 69564474--69564643 Score: 121
Period size: 27 Copynumber: 6.3 Consensus size: 27
69564464 GCCCTCGATT
* * * *
69564474 TGTAAAATTATCGAAACACCCTT-GAG
1 TGTAAAATTACCAAAATACCCTTATAG
** * *
69564500 TTGTAAAATTACTGAAATACCCTCA-ATT
1 -TGTAAAATTACCAAAATACCCTTATA-G
* * *
69564528 TGTAAAACTACCAAAATACCCTCGAT-T
1 TGTAAAATTACCAAAATACCCT-TATAG
69564555 TGTAAAATTACCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCTTATAG
* *
69564582 TGTAAAATTACCAAAATACCCTTGTAA
1 TGTAAAATTACCAAAATACCCTTATAG
* ** * *
69564609 TGTAAAATGACTGACATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTATAG
*
69564636 GGTAAAAT
1 TGTAAAAT
69564644 GACTATTTTG
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
26 2 0.02
27 115 0.97
28 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTATAG
Found at i:69564684 original size:26 final size:27
Alignment explanation
Indices: 69564610--69564686 Score: 88
Period size: 26 Copynumber: 2.9 Consensus size: 27
69564600 CCCTTGTAAT
*
69564610 GTAAAATGACTGACATA-CCCTTGTAGG
1 GTAAAATGACTGACTTAGCCCTTG-AGG
* *
69564637 GTAAAATGACT-ATTTTGCCCTTGAGG
1 GTAAAATGACTGACTTAGCCCTTGAGG
*
69564663 GT-AAATGACTGACTTAGACCTTGA
1 GTAAAATGACTGACTTAGCCCTTGA
69564687 ATTTGACTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
25 8 0.19
26 17 0.40
27 17 0.40
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAAAATGACTGACTTAGCCCTTGAGG
Found at i:69567045 original size:50 final size:49
Alignment explanation
Indices: 69566878--69567120 Score: 265
Period size: 49 Copynumber: 4.9 Consensus size: 49
69566868 TCTATTGTGA
*
69566878 GGTCACGAGTGTAGTACTAA-TGCAGGCT-CTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * * *
69566925 GGTCGCATGTATAGTACTAAGTGCAGACTACTATGCGTACCTGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * * **
69566976 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
69567025 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
69567075 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
69567121 GCCTTGTCTA
Statistics
Matches: 158, Mismatches: 33, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
47 16 0.10
48 7 0.04
49 55 0.35
50 43 0.27
51 37 0.23
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:69568643 original size:55 final size:56
Alignment explanation
Indices: 69568558--69568668 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 56
69568548 ATGGATGTGT
69568558 AAGTGCTCATTTATGCCACGTTATATGTCTTTAAATATGAGTCTATGCATATGTTC
1 AAGTGCTCATTTATGCCACGTTATATGTCTTTAAATATGAGTCTATGCATATGTTC
69568614 AAGTGCTCA-TTATGCCACGTTATATGTCTTTAAATATGAGTCTATGCATATGTTC
1 AAGTGCTCATTTATGCCACGTTATATGTCTTTAAATATGAGTCTATGCATATGTTC
69568669 GAAAAGTTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 46 0.84
56 9 0.16
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (56 bp):
AAGTGCTCATTTATGCCACGTTATATGTCTTTAAATATGAGTCTATGCATATGTTC
Found at i:69572534 original size:27 final size:27
Alignment explanation
Indices: 69572493--69572546 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
69572483 CATCATGTGA
* *
69572493 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
69572520 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
69572547 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:69572870 original size:51 final size:49
Alignment explanation
Indices: 69572794--69572932 Score: 156
Period size: 51 Copynumber: 2.8 Consensus size: 49
69572784 TATTGTGAGG
* * *
69572794 TCACGTATGTTGTACAAAGTGCAGGCTACTATGCGTACCCAATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAA-TT-GA
** *
69572845 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATG-G-ACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACT--ATGCGTACCCAATAATTGA
* *
69572894 TCACATGTGTAGTACTAAGTGCAGGCTACAATGCGTACC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
69572933 AGATAGCCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
47 3 0.04
48 1 0.01
49 32 0.42
50 2 0.03
51 34 0.45
52 1 0.01
53 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAATTGA
Found at i:69574094 original size:17 final size:17
Alignment explanation
Indices: 69574072--69574104 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
69574062 ATTTTTTATT
69574072 CTCTTGATGCC-ATTTCC
1 CTCTTG-TGCCAATTTCC
69574089 CTCTTGTGCCAATTTC
1 CTCTTGTGCCAATTTC
69574105 TTTTATTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.12, C:0.33, G:0.12, T:0.42
Consensus pattern (17 bp):
CTCTTGTGCCAATTTCC
Found at i:69579320 original size:28 final size:28
Alignment explanation
Indices: 69579202--69579321 Score: 168
Period size: 28 Copynumber: 4.3 Consensus size: 28
69579192 TGTGCCAAGG
*
69579202 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
69579230 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
69579258 TTAGGTCTAATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
69579286 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
69579314 TTGGGCCT
1 TTGGGCCT
69579322 AAAGGGGCCA
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 82 1.00
ACGTcount: A:0.22, C:0.13, G:0.35, T:0.30
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:69579670 original size:27 final size:27
Alignment explanation
Indices: 69579640--69580005 Score: 344
Period size: 27 Copynumber: 13.6 Consensus size: 27
69579630 TAATAAAGAG
* *
69579640 AAATTATCAAAATACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
69579667 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
69579694 AAATTATCAAAAAACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
69579721 AAATTACCAAAATACCCTAGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
69579747 AAA-TACTAAAATGCCTTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
69579773 AAATTACCGAAATACCCCCAATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
69579800 AAATT-CTCGAAACATCCTCGATTTGTA
1 AAATTAC-CAAAATACCCTCGATTTGTA
* * *
69579827 AAATTACCAAAACACCGTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
69579854 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
**
69579881 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
69579908 GAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
69579935 AAATTACCAAAACACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
69579962 AAATTATCAAAATACCCTTG-TAGTGTA
1 AAATTACCAAAATACCCTCGAT-TTGTA
* *
69579989 AAATTACCGACATACCC
1 AAATTACCAAAATACCC
69580006 CTATAGGGTA
Statistics
Matches: 275, Mismatches: 59, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
25 13 0.05
26 16 0.06
27 245 0.89
28 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:69580004 original size:81 final size:81
Alignment explanation
Indices: 69579640--69580005 Score: 380
Period size: 81 Copynumber: 4.5 Consensus size: 81
69579630 TAATAAAGAG
* * * *
69579640 AAATTATCAAAATACCCCCGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAAATTATCAAA
1 AAATTATCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
*
69579705 AAACCCCCGATTTGTA
66 ATACCCCCGATTTGTA
* * * ** * * * *
69579721 AAATTACCAAAATACCCTAGA-TTGTGAAA-TACTAAAATGCCTTCGATTTGTAAAATTACCGAA
1 AAATTATCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
* *
69579784 ATACCCCCAATTTGTG
66 ATACCCCCGATTTGTA
* * * * * * * **
69579800 AAATTCTCGAAACATCCTCGATTTGTAAAATTACCAAAACACCGTCAATTTGTAAAATTACTGAA
1 AAATTATCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
**
69579865 ATACCCTTGATTTGTA
66 ATACCCCCGATTTGTA
* * *
69579881 AAATTA-CTGAAATACCCTCGATTTGTAGAATTATCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAATTATC-AAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
69579945 AACACCCCCGATTTGTA
65 AATACCCCCGATTTGTA
* * *
69579962 AAATTATCAAAATACCCTTG-TAGTGTAAAATTACCGACATACCC
1 AAATTATCAAAATACCCTCGAT-TTGTAAAATTACCGAAATACCC
69580006 CTATAGGGTA
Statistics
Matches: 230, Mismatches: 50, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
79 55 0.24
80 16 0.07
81 158 0.69
82 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (81 bp):
AAATTATCAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCCGATTTGTA
Found at i:69580016 original size:27 final size:27
Alignment explanation
Indices: 69579932--69580019 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
69579922 CCCTCAATTT
* * **
69579932 GTAAAATTACCAAAACACCCCCGAT-TT
1 GTAAAATTACCAAAATA-CCCCTATAGG
* * * *
69579959 GTAAAATTATCAAAATACCCTTGTAGT
1 GTAAAATTACCAAAATACCCCTATAGG
* *
69579986 GTAAAATTACCGACATACCCCTATAGG
1 GTAAAATTACCAAAATACCCCTATAGG
69580013 GTAAAAT
1 GTAAAAT
69580020 GATTATTTTG
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
26 4 0.08
27 44 0.92
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTATAGG
Found at i:69583280 original size:37 final size:38
Alignment explanation
Indices: 69583222--69583329 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 38
69583212 TAGCTCGAAT
* *
69583222 AGTCCCCACACGTAGTTATCGGGTCTTACCCGGACA-A
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
*
69583259 AGTCTCCACACGTAGTCATCGGGTCTTACCCAGACATA
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
69583297 A-TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGA
69583330 ATATATTTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
37 64 0.97
38 2 0.03
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (38 bp):
AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
Found at i:69583542 original size:48 final size:48
Alignment explanation
Indices: 69583470--69583711 Score: 385
Period size: 48 Copynumber: 5.0 Consensus size: 48
69583460 ATATACACAC
* *
69583470 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
69583518 ATCTCATATAAATTTTACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69583566 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
69583614 ATCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
69583662 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
69583710 AT
1 AT
69583712 ATTTATCTTG
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 177 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:69589256 original size:41 final size:41
Alignment explanation
Indices: 69589188--69589278 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 41
69589178 ATCTGAGTAG
* *
69589188 CACATGGCCTGGGACATGGGCTGTCACACGA-CTGTGTGCTA
1 CACATAGCCTGGGACATGGGCTGTCACACGATC-GTGTGCCA
* * *
69589229 CACATAGCCTGGGACATGGGTTTTCACATGATCGTGTGCCA
1 CACATAGCCTGGGACATGGGCTGTCACACGATCGTGTGCCA
*
69589270 CACACAGCC
1 CACATAGCC
69589279 ACCCCACATG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 42 0.98
42 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (41 bp):
CACATAGCCTGGGACATGGGCTGTCACACGATCGTGTGCCA
Found at i:69590015 original size:3 final size:3
Alignment explanation
Indices: 69590007--69590081 Score: 114
Period size: 3 Copynumber: 25.0 Consensus size: 3
69589997 TATGGAAATG
* * * *
69590007 GAT GAT GAT GAT GAT GAT GAT AAT GGT GGT GGT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
69590055 GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
69590082 AGCTATAACT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:69592388 original size:113 final size:113
Alignment explanation
Indices: 69592190--69592415 Score: 452
Period size: 113 Copynumber: 2.0 Consensus size: 113
69592180 ACCTTATGTC
69592190 CATCAAGTAGTGTAAGAATGAGCCTTTGCAAGACTTTGTAAAAGGATTGAATGCAACAAAAATGA
1 CATCAAGTAGTGTAAGAATGAGCCTTTGCAAGACTTTGTAAAAGGATTGAATGCAACAAAAATGA
69592255 TCAAAATGGATGTCCCCAAAGATTTTGTTGTCCAAGCCTTAATGTCAA
66 TCAAAATGGATGTCCCCAAAGATTTTGTTGTCCAAGCCTTAATGTCAA
69592303 CATCAAGTAGTGTAAGAATGAGCCTTTGCAAGACTTTGTAAAAGGATTGAATGCAACAAAAATGA
1 CATCAAGTAGTGTAAGAATGAGCCTTTGCAAGACTTTGTAAAAGGATTGAATGCAACAAAAATGA
69592368 TCAAAATGGATGTCCCCAAAGATTTTGTTGTCCAAGCCTTAATGTCAA
66 TCAAAATGGATGTCCCCAAAGATTTTGTTGTCCAAGCCTTAATGTCAA
69592416 GGACAACACA
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.27
Consensus pattern (113 bp):
CATCAAGTAGTGTAAGAATGAGCCTTTGCAAGACTTTGTAAAAGGATTGAATGCAACAAAAATGA
TCAAAATGGATGTCCCCAAAGATTTTGTTGTCCAAGCCTTAATGTCAA
Found at i:69595256 original size:40 final size:40
Alignment explanation
Indices: 69595212--69595337 Score: 189
Period size: 40 Copynumber: 3.1 Consensus size: 40
69595202 TAGTGACTAC
* *
69595212 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
* * *
69595252 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
* *
69595292 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
69595332 ATCCGG
1 ATCCGG
69595338 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
Found at i:69600419 original size:40 final size:39
Alignment explanation
Indices: 69600336--69600519 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
69600326 AAATTGAATG
* * * * *
69600336 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* *
69600376 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
69600416 ATATTCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
69600456 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
69600495 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
69600520 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 110 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:69606024 original size:2 final size:2
Alignment explanation
Indices: 69606017--69606043 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
69606007 TCATGACATG
69606017 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
69606044 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:69608486 original size:46 final size:46
Alignment explanation
Indices: 69608419--69608593 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
69608409 TGTAACCCGC
*
69608419 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
69608465 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
69608515 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
69608558 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
69608594 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:69608539 original size:93 final size:93
Alignment explanation
Indices: 69608426--69608597 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69608416 CGCCCATAAG
* * *
69608426 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69608491 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
69608519 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69608584 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69608598 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69615996 original size:40 final size:40
Alignment explanation
Indices: 69615916--69616176 Score: 400
Period size: 40 Copynumber: 6.5 Consensus size: 40
69615906 ACCCAAGTTT
* * * *
69615916 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
69615955 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
69615995 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
69616035 CTTCGGGTCTTAGCCCGGATATAACAACTCTCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
69616075 CTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
69616115 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
69616155 GTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
69616177 CATTCAAATG
Statistics
Matches: 204, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
38 1 0.00
39 10 0.05
40 193 0.95
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Done.