Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 232 of 770
Found at i:69619975 original size:2 final size:2
Alignment explanation
Indices: 69619968--69620003 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
69619958 CCACCAGAAC
*
69619968 AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69620004 GTGGCGAAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:69620375 original size:19 final size:19
Alignment explanation
Indices: 69620351--69620396 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
69620341 TGGGCCCGTT
*
69620351 GGCCCATTGGCTCGTTTTC
1 GGCCCATTGGCCCGTTTTC
69620370 GGCCCATTGGCCCGTTTTC
1 GGCCCATTGGCCCGTTTTC
*
69620389 AGCCCATT
1 GGCCCATT
69620397 AAGCCCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.35, G:0.24, T:0.33
Consensus pattern (19 bp):
GGCCCATTGGCCCGTTTTC
Found at i:69626410 original size:2 final size:2
Alignment explanation
Indices: 69626403--69626440 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
69626393 CGCCACCAGA
69626403 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69626441 GTGTGGCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69626523 original size:27 final size:26
Alignment explanation
Indices: 69626475--69626526 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69626465 GCGAGGCTGC
*
69626475 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
69626501 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
69626527 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:69629366 original size:27 final size:26
Alignment explanation
Indices: 69629317--69629404 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
69629307 AGCATGGCTG
* *
69629317 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
69629343 CCAGATACAAATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* **
69629370 CTAGAAACAGATATTTGTGGCTTAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
69629398 CCAGAAC
1 CCAGAAC
69629405 GCTTCCTCCA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
26 5 0.10
27 29 0.59
28 15 0.31
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:69632116 original size:40 final size:40
Alignment explanation
Indices: 69632046--69632267 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
69632036 AAACCAAGTA
* * * *
69632046 CCTTTGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
69632085 CCTTCAGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
69632125 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
69632165 CCTTCAGGAGTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
69632205 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
69632245 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
69632268 CATCCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 154 0.93
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:69640271 original size:40 final size:40
Alignment explanation
Indices: 69640194--69640454 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
69640184 AAACCAAGTA
* * *
69640194 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
69640233 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
69640273 CCTTCGGGACTTAGCCCGGATATAGTAACTCTCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
69640313 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
69640353 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
69640393 CCTT-GGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
69640432 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
69640455 CATCTGAATA
Statistics
Matches: 211, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
39 53 0.25
40 158 0.75
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:69647371 original size:57 final size:57
Alignment explanation
Indices: 69647280--69647395 Score: 205
Period size: 57 Copynumber: 2.0 Consensus size: 57
69647270 CCCTGACTTT
* *
69647280 ATGCTCCATAGATCGGCACCGAAAACAAGTACCAGAACGTTTCCTACACTCACCCAG
1 ATGCTCCATAGATCCGCACCGAAAACAAGCACCAGAACGTTTCCTACACTCACCCAG
*
69647337 ATGCTCCATAGATCCGCACCGAAAACAAGCACCAGAACGTTTCCTACACTCGCCCAG
1 ATGCTCCATAGATCCGCACCGAAAACAAGCACCAGAACGTTTCCTACACTCACCCAG
69647394 AT
1 AT
69647396 TACCTTACCA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.33, C:0.34, G:0.16, T:0.17
Consensus pattern (57 bp):
ATGCTCCATAGATCCGCACCGAAAACAAGCACCAGAACGTTTCCTACACTCACCCAG
Found at i:69649661 original size:27 final size:26
Alignment explanation
Indices: 69649624--69649737 Score: 95
Period size: 27 Copynumber: 4.2 Consensus size: 26
69649614 AGCATGGCTG
*
69649624 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
**
69649650 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* **
69649677 CCAAAACAGATATTTGTG-GTGTAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCA
** *
69649704 CCAGAAACAGATATTTGTGGTATAGCCA
1 CCAG-AACAGATA-TTGTGACAGAGCCA
69649732 CCAGAA
1 CCAGAA
69649738 TGTTTCCTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
26 13 0.18
27 37 0.51
28 23 0.32
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:69649720 original size:28 final size:28
Alignment explanation
Indices: 69649648--69649737 Score: 132
Period size: 28 Copynumber: 3.3 Consensus size: 28
69649638 GTGACAGAGT
*
69649648 CACCAGATACAGATA-TTGTGGTAG-AGC
1 CACCAGAAACAGATATTTGTGGT-GTAGC
69649675 CACCA-AAACAGATATTTGTGGTGTAGC
1 CACCAGAAACAGATATTTGTGGTGTAGC
*
69649702 CACCAGAAACAGATATTTGTGGTATAGC
1 CACCAGAAACAGATATTTGTGGTGTAGC
69649730 CACCAGAA
1 CACCAGAA
69649738 TGTTTCCTCC
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
26 9 0.16
27 20 0.34
28 29 0.50
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGTGTAGC
Found at i:69652012 original size:28 final size:29
Alignment explanation
Indices: 69651964--69652087 Score: 180
Period size: 28 Copynumber: 4.3 Consensus size: 29
69651954 AGGTCTACAT
* *
69651964 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
69651992 TCATTCATATGCCCCATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
69652020 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
69652049 ACATTCTTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
69652078 ACATTCATAT
1 ACATTCATAT
69652088 ACATGCTTTC
Statistics
Matches: 86, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 45 0.52
29 41 0.48
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:69652073 original size:57 final size:57
Alignment explanation
Indices: 69651971--69652083 Score: 174
Period size: 57 Copynumber: 2.0 Consensus size: 57
69651961 CATACATGCA
*
69651971 TATGGCCCACTAGGCCCAATCTCATTCATATGCCCCATTAGGCCC-AATCACATTCG
1 TATGGCCCACTAGGCCCAATCACATTCATATGCCCCATTAGGCCCAAATCACATTCG
* * *
69652027 TATGGCCCATTAGGCCCAAATCACATTCTTATGGCCCATTAGGCCCAAATCACATTC
1 TATGGCCCACTAGGCCC-AATCACATTCATATGCCCCATTAGGCCCAAATCACATTC
69652084 ATATACATGC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
56 16 0.31
57 25 0.49
58 10 0.20
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.26
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGCCCCATTAGGCCCAAATCACATTCG
Found at i:69652319 original size:16 final size:16
Alignment explanation
Indices: 69652298--69652334 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
69652288 GTAGCCAAAC
* *
69652298 TTTTGGCTTTTTGGCA
1 TTTTGGCTTTTCGACA
69652314 TTTTGGCTTTTCGACA
1 TTTTGGCTTTTCGACA
69652330 TTTTG
1 TTTTG
69652335 AGATTTGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.14, G:0.22, T:0.57
Consensus pattern (16 bp):
TTTTGGCTTTTCGACA
Found at i:69654302 original size:32 final size:32
Alignment explanation
Indices: 69654238--69654321 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 32
69654228 GTAGCGATAT
* * *
69654238 TATAATTGACACAAAGCCATCGGTAACTGTAA
1 TATAATTGGCACAAAGCCATCAGTAACGGTAA
* * *
69654270 TA-AGTCTGGCACATAGCCATCAGTGACGGTAA
1 TATAAT-TGGCACAAAGCCATCAGTAACGGTAA
*
69654302 TATAATTGGCACACAGCCAT
1 TATAATTGGCACAAAGCCAT
69654322 GGGTAAAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
31 2 0.05
32 38 0.90
33 2 0.05
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (32 bp):
TATAATTGGCACAAAGCCATCAGTAACGGTAA
Found at i:69654422 original size:22 final size:22
Alignment explanation
Indices: 69654397--69654452 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
69654387 ATTTGCGCAA
69654397 AGCCATAATCAGCATAGCACAG
1 AGCCATAATCAGCATAGCACAG
* * ** *
69654419 AGCCATATTTAGGTTGGCACAG
1 AGCCATAATCAGCATAGCACAG
69654441 AGCCATAATCAG
1 AGCCATAATCAG
69654453 ATTAAGTAGC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (22 bp):
AGCCATAATCAGCATAGCACAG
Found at i:69656957 original size:27 final size:27
Alignment explanation
Indices: 69656927--69657081 Score: 175
Period size: 27 Copynumber: 5.7 Consensus size: 27
69656917 AATCAATAAT
* * *
69656927 ATGACTATTTTTCCCTTATGAGGAAAA
1 ATGACTATTTTGCCCTTATGGGGTAAA
* * *
69656954 ATGATTATTTTACCCTTATGGGGTACA
1 ATGACTATTTTGCCCTTATGGGGTAAA
*
69656981 ATGACTGTTTTGCCCTTATGGGGTAAA
1 ATGACTATTTTGCCCTTATGGGGTAAA
* * *
69657008 ATGACTGTTTTGCCCTTATGTGGTAAG
1 ATGACTATTTTGCCCTTATGGGGTAAA
** *
69657035 ATGACTATTTTGCCCTTATATGGTAAG
1 ATGACTATTTTGCCCTTATGGGGTAAA
* *
69657062 ATTACTATTTTGCCCCTATG
1 ATGACTATTTTGCCCTTATG
69657082 TGATGTATGT
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (27 bp):
ATGACTATTTTGCCCTTATGGGGTAAA
Found at i:69664858 original size:29 final size:29
Alignment explanation
Indices: 69664825--69664984 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
69664815 GTGACGAGAT
69664825 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69664854 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69664883 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
69664912 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
69664941 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
69664970 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
69664985 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69672898 original size:29 final size:29
Alignment explanation
Indices: 69672865--69673024 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
69672855 GTGACGAGAT
69672865 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69672894 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69672923 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
69672952 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
69672981 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
69673010 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
69673025 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69677094 original size:40 final size:41
Alignment explanation
Indices: 69677049--69677215 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
69677039 CGGAATATAA
*
69677049 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
69677089 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69677129 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69677169 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
69677208 CCGGATAT
1 CCGGATAT
69677216 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69678062 original size:17 final size:19
Alignment explanation
Indices: 69678039--69678084 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
69678029 AAGAAGCATG
69678039 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
69678057 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
69678075 AATCATGCTC
1 AATCATGCTC
69678085 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:69685111 original size:39 final size:40
Alignment explanation
Indices: 69685067--69685232 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
69685057 CGGAATATAA
*
69685067 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69685106 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69685146 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69685186 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69685225 CCGGATAT
1 CCGGATAT
69685233 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69686080 original size:17 final size:19
Alignment explanation
Indices: 69686057--69686102 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
69686047 AAGAAGCATG
69686057 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
69686075 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
69686093 AATCATGCTC
1 AATCATGCTC
69686103 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:69691400 original size:28 final size:27
Alignment explanation
Indices: 69691339--69691408 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
69691329 ATAGTGAGTC
*
69691339 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
69691366 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
69691394 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69691409 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:69694908 original size:50 final size:50
Alignment explanation
Indices: 69694823--69695038 Score: 247
Period size: 50 Copynumber: 4.3 Consensus size: 50
69694813 GCTAAATGAC
* * * * *
69694823 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
* * * * *
69694873 CTTGAATATTCGGCCATGA-AGGTATGCAGAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTATA-TTGGAT
* *
69694924 -TTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
* * * *
69694973 CTTGCATATTCCGCCATATAGGTAAGCACATATGTGCTATTATATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
*
69695023 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
69695039 AATGAGTGAT
Statistics
Matches: 140, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 5 0.04
50 129 0.92
51 6 0.04
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTGGAT
Found at i:69695008 original size:100 final size:100
Alignment explanation
Indices: 69694823--69695038 Score: 274
Period size: 100 Copynumber: 2.2 Consensus size: 100
69694813 GCTAAATGAC
* * * ** *
69694823 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGATCTTGAATATTCGGCC
1 CTTGTATATTCGGCCACATAGGTAAGCACATATGTGATATTAAATTGGATCTTGAATATTCCGCC
* *
69694888 ATGAAGGTATGCAGAAATGTGATATTATATTTGAAT
66 ATGAAGGTAAGCACAAATGTGATATTATATTTG-AT
* * *
69694924 -TTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGATCTTGCATATTCCGCC
1 CTTGTATATTCGGCCACATAGGTAAGCACATATGTGATATTAAATTGGATCTTGAATATTCCGCC
* *
69694988 AT-ATAGGTAAGCACATATGTGCTATTATATTTGAT
66 ATGA-AGGTAAGCACAAATGTGATATTATATTTGAT
*
69695023 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
69695039 AATGAGTGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 3 0.03
100 96 0.97
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (100 bp):
CTTGTATATTCGGCCACATAGGTAAGCACATATGTGATATTAAATTGGATCTTGAATATTCCGCC
ATGAAGGTAAGCACAAATGTGATATTATATTTGAT
Found at i:69696318 original size:15 final size:15
Alignment explanation
Indices: 69696298--69696327 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69696288 GTCTAGCTAT
*
69696298 ACATGTTATATTAAA
1 ACATGTCATATTAAA
69696313 ACATGTCATATTAAA
1 ACATGTCATATTAAA
69696328 TACTGCGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (15 bp):
ACATGTCATATTAAA
Found at i:69701524 original size:2 final size:2
Alignment explanation
Indices: 69701517--69701545 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
69701507 TCATGACATG
69701517 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69701546 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:69706121 original size:50 final size:49
Alignment explanation
Indices: 69706063--69706260 Score: 175
Period size: 50 Copynumber: 4.0 Consensus size: 49
69706053 AGGTATCGAC
* *
69706063 AAAGGTATGTACATATGTGATGTTGTATTGGATCTTGAATATTCGGCCAT
1 AAAGGTATG-ACATATGTGATGTTATATTTGATCTTGAATATTCGGCCAT
* * * * * *
69706113 AAAGGTATGCACAAATGTGATATTATATTTGAACTTGTATATTAGACCAT
1 AAAGGTATG-ACATATGTGATGTTATATTTGATCTTGAATATTCGGCCAT
* * * *
69706163 ATAGGTAAGACATATGTGATAG-TAAATTTGATCTTGCATATTCGGCCAT
1 AAAGGTATGACATATGTGAT-GTTATATTTGATCTTGAATATTCGGCCAT
* * * * * *
69706212 ATAGGTAAGCACTTATGT-ACTATTATATTTAATCTTGAATATTTGGCCA
1 AAAGGTATG-ACATATGTGA-TGTTATATTTGATCTTGAATATTCGGCCA
69706261 AATGAGTGAT
Statistics
Matches: 120, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
49 42 0.35
50 78 0.65
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (49 bp):
AAAGGTATGACATATGTGATGTTATATTTGATCTTGAATATTCGGCCAT
Found at i:69706204 original size:49 final size:50
Alignment explanation
Indices: 69706093--69706260 Score: 178
Period size: 50 Copynumber: 3.4 Consensus size: 50
69706083 TGTTGTATTG
* * * * *
69706093 GATCTTGAATATTCGGCCATAAAGGTATGCACAAATGTGATATTATATTT
1 GATCTTGAATATTCGGCCATATAGGTAAGCACATATGTGATAGTAAATTT
* * * *
69706143 GAACTTGTATATTAGACCATATAGGTAAG-ACATATGTGATAGTAAATTT
1 GATCTTGAATATTCGGCCATATAGGTAAGCACATATGTGATAGTAAATTT
* * * *
69706192 GATCTTGCATATTCGGCCATATAGGTAAGCACTTATGT-ACTATTATATTT
1 GATCTTGAATATTCGGCCATATAGGTAAGCACATATGTGA-TAGTAAATTT
* *
69706242 AATCTTGAATATTTGGCCA
1 GATCTTGAATATTCGGCCA
69706261 AATGAGTGAT
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 43 0.44
50 54 0.56
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (50 bp):
GATCTTGAATATTCGGCCATATAGGTAAGCACATATGTGATAGTAAATTT
Found at i:69707610 original size:28 final size:28
Alignment explanation
Indices: 69707564--69707632 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
69707554 TTTAAAACCC
*
69707564 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
69707591 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
69707619 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
69707633 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:69709281 original size:20 final size:20
Alignment explanation
Indices: 69709258--69709295 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69709248 CACATCCAAA
*
69709258 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
69709278 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
69709296 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:69711479 original size:24 final size:24
Alignment explanation
Indices: 69711235--69711471 Score: 420
Period size: 24 Copynumber: 9.9 Consensus size: 24
69711225 GCAAAGACCA
*
69711235 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
69711259 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
69711283 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
69711307 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
69711331 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
69711355 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
69711379 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
69711403 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
69711427 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
69711451 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
69711472 TGCTATAGTC
Statistics
Matches: 207, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 207 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:69718936 original size:17 final size:18
Alignment explanation
Indices: 69718894--69718942 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69718884 AGTTGAAAAG
69718894 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69718913 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69718930 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69718943 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69719831 original size:40 final size:40
Alignment explanation
Indices: 69719765--69719931 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
69719755 AAATTGAATG
* * *
69719765 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
69719804 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69719844 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69719884 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69719924 ATATCCGG
1 ATATCCGG
69719932 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69722744 original size:24 final size:24
Alignment explanation
Indices: 69722452--69722736 Score: 507
Period size: 24 Copynumber: 11.9 Consensus size: 24
69722442 GCAAAGACCA
*
69722452 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
69722476 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
69722500 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
69722524 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
69722548 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
69722572 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
69722596 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
69722620 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
69722644 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
69722668 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
69722692 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
69722716 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
69722737 TGCTATAGTC
Statistics
Matches: 253, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 253 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:69730259 original size:28 final size:28
Alignment explanation
Indices: 69730213--69730281 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
69730203 TTTAAAACCC
*
69730213 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
69730240 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
69730268 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
69730282 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:69731930 original size:20 final size:20
Alignment explanation
Indices: 69731907--69731944 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69731897 CACATCCAAA
*
69731907 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
69731927 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
69731945 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:69733435 original size:27 final size:27
Alignment explanation
Indices: 69733405--69733545 Score: 201
Period size: 27 Copynumber: 5.2 Consensus size: 27
69733395 GGGTAAAATG
* *
69733405 GTAATTTTACCCTACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69733432 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69733459 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
69733486 GTAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69733513 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69733540 ATAATT
1 GTAATT
69733546 TTGTAAATCG
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:69733596 original size:27 final size:27
Alignment explanation
Indices: 69733566--69733980 Score: 326
Period size: 27 Copynumber: 15.3 Consensus size: 27
69733556 AGAGTAAAAC
* * *
69733566 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
69733593 GGTAATTTTTACAAGTCGAGGGTATTTC
1 GGTAA-TTTTACAAATCGAGGGTATTTT
* *
69733621 AGTAATTTTACAAATTGAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* **
69733648 AGTAATTTTGTAAA-CTGAGGGTATTTT
1 GGTAATTTTACAAATC-GAGGGTATTTT
* * *
69733675 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
69733702 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
** * *
69733729 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
69733756 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** * *
69733783 AATAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
69733810 GGTAATTTTACAAGTCGAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
** *
69733837 -AAAATTTTCAAAAATC-AGGGGTATTTT
1 GGTAATTTT-ACAAATCGA-GGGTATTTT
* * *
69733864 GGTAATTTCATAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
69733891 GGTAATTTTATAAA-CCAGGGGTATTTTT
1 GGTAATTTTACAAATCGA-GGGTA-TTTT
* *
69733919 GGTAATTTTACAAA-CTAGGGGTATTTA
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
69733946 AGTAATTTTACAAATTGAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
*
69733973 AGTAATTT
1 GGTAATTT
69733981 GGTAAACTAA
Statistics
Matches: 319, Mismatches: 55, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
26 10 0.03
27 254 0.80
28 55 0.17
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:69733714 original size:81 final size:81
Alignment explanation
Indices: 69733612--69733988 Score: 372
Period size: 81 Copynumber: 4.6 Consensus size: 81
69733602 TACAAGTCGA
*
69733612 GGGTATTTCAGTAATTTTACAAATT-GAGGGTATTTTAGTAATTTTGTAAACTGAGGGTATTTTA
1 GGGTATTTCAGTAATTTTACAAATTAG-GGGTATTTTGGTAATTTTGTAAACTGAGGGTATTTTA
69733676 GTAATTTCACAAATTAG
65 GTAATTTCACAAATTAG
** * ** *
69733693 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAACTGAGGGTATTTTAG
* * *
69733758 TAATTTTAC-AAGTCG
66 TAATTTCACAAATTAG
* * *
69733773 AGGGTATTTCAATAATTTCACAAATTAGGGGTATTTTGGTAA-TTT-TACAAGTCGAGGGTATTT
1 -GGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTA-AACT-GAGGGTATTT
* * *
69733836 TA-AAATTTTCAAAAATCAG
63 TAGTAA-TTTCACAAATTAG
** * * * * *
69733855 GGGTATTTTGGTAATTTCATAAACTAGGGGTATTTTGGTAATTTTATAAAC-CAGGGGTATTTTT
1 GGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAACTGA-GGGTA-TTTT
* * *
69733919 GGTAATTTTACAAACTAG
64 AGTAATTTCACAAATTAG
* * *
69733937 GGGTATTTAAGTAATTTTACAAATT-GAGGGTATTTTAGTAATTTGGTAAACT
1 GGGTATTTCAGTAATTTTACAAATTAG-GGGTATTTTGGTAATTTTGTAAACT
69733989 AAAGTATTCT
Statistics
Matches: 237, Mismatches: 46, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
79 2 0.01
80 12 0.05
81 156 0.66
82 63 0.27
83 4 0.02
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAACTGAGGGTATTTTAG
TAATTTCACAAATTAG
Found at i:69742011 original size:20 final size:20
Alignment explanation
Indices: 69741974--69742012 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69741964 AATAATACAC
* *
69741974 TTATACATATATATAACATT
1 TTATACATATACAGAACATT
*
69741994 TTATACATTTACAGAACAT
1 TTATACATATACAGAACAT
69742013 AATTGTATCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (20 bp):
TTATACATATACAGAACATT
Found at i:69744163 original size:26 final size:26
Alignment explanation
Indices: 69744134--69744184 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
69744124 CATATTCAGC
* *
69744134 CATAGCATAATTTAATTATAACATTT
1 CATAGCAGAATGTAATTATAACATTT
*
69744160 CATAGCAGCATGTAATTATAACATT
1 CATAGCAGAATGTAATTATAACATT
69744185 AAACTATCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (26 bp):
CATAGCAGAATGTAATTATAACATTT
Found at i:69745049 original size:31 final size:31
Alignment explanation
Indices: 69745011--69745074 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
69745001 CCTTTTCATA
*
69745011 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTAGGCCGAAGCCT
*
69745042 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAATACTAGGCCGAAGCCT
69745073 TT
1 TT
69745075 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTAGGCCGAAGCCT
Found at i:69746179 original size:31 final size:31
Alignment explanation
Indices: 69746141--69746204 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
69746131 CCTTTTCATA
69746141 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
69746172 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69746203 TT
1 TT
69746205 ATGTAAACGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:69746446 original size:24 final size:24
Alignment explanation
Indices: 69746395--69746513 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
69746385 GCTTTATCAT
*
69746395 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69746420 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69746444 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69746467 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69746491 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69746514 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69746474 original size:47 final size:48
Alignment explanation
Indices: 69746395--69746513 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
69746385 GCTTTATCAT
*
69746395 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
69746444 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
69746491 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69746514 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:69746589 original size:20 final size:20
Alignment explanation
Indices: 69746564--69746623 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
69746554 TATGATTACC
69746564 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
69746584 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
69746604 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69746624 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69746594 original size:11 final size:11
Alignment explanation
Indices: 69746564--69746618 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69746554 TATGATTACC
69746564 TCATGTGCATA
1 TCATGTGCATA
*
69746575 TCA--TACATA
1 TCATGTGCATA
69746584 TCATGTGCATA
1 TCATGTGCATA
* *
69746595 TCA--TACATT
1 TCATGTGCATA
69746604 TCATGTGCATA
1 TCATGTGCATA
69746615 TCAT
1 TCAT
69746619 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:69746698 original size:25 final size:25
Alignment explanation
Indices: 69746666--69746713 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69746656 ATACATAAAC
* * *
69746666 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69746691 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69746714 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69754253 original size:31 final size:31
Alignment explanation
Indices: 69754215--69754278 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
69754205 CCTTTTCATA
69754215 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
69754246 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69754277 TT
1 TT
69754279 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:69754521 original size:24 final size:24
Alignment explanation
Indices: 69754470--69754613 Score: 202
Period size: 24 Copynumber: 6.0 Consensus size: 24
69754460 GCTTTATCAT
*
69754470 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69754495 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69754519 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69754542 ATAACATGGGGCATAAGCCCTTTTG
1 ATAAC-TGGGGCATAAGCCCTTTTA
*
69754567 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69754591 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69754614 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 5 0.05
24 89 0.80
25 17 0.15
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69754689 original size:20 final size:20
Alignment explanation
Indices: 69754664--69754723 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
69754654 TATGATTACC
69754664 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
69754684 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
69754704 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69754724 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69754694 original size:11 final size:11
Alignment explanation
Indices: 69754664--69754718 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69754654 TATGATTACC
69754664 TCATGTGCATA
1 TCATGTGCATA
*
69754675 TCA--TACATA
1 TCATGTGCATA
69754684 TCATGTGCATA
1 TCATGTGCATA
* *
69754695 TCA--TACATT
1 TCATGTGCATA
69754704 TCATGTGCATA
1 TCATGTGCATA
69754715 TCAT
1 TCAT
69754719 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:69754798 original size:25 final size:25
Alignment explanation
Indices: 69754766--69754813 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69754756 ATACATAAAC
* * *
69754766 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69754791 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69754814 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69763713 original size:6 final size:6
Alignment explanation
Indices: 69763683--69763751 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
69763673 AAGAAACATT
* * *
69763683 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
69763730 GTGACAGA ATCAGA ATCAGA AT
1 AT--CAGA ATCAGA ATCAGA AT
69763752 TAGGTGACAG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:69763744 original size:25 final size:25
Alignment explanation
Indices: 69763709--69763801 Score: 123
Period size: 25 Copynumber: 3.7 Consensus size: 25
69763699 AAATGAGAAT
* *
69763709 CAGAATTAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
69763734 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
* * *
69763759 CAGAACCAGAATCAGTATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTGA
* *
69763784 CAAAATCAGAATTAGAAT
1 CAGAATCAGAATCAGAAT
69763802 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:69764070 original size:22 final size:22
Alignment explanation
Indices: 69764045--69764097 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
69764035 CAGTACACAT
69764045 CCATAATCAGGTTGGCACAAAG
1 CCATAATCAGGTTGGCACAAAG
* *
69764067 CCAT-ATGTAGGTTGGCGCAAAG
1 CCATAAT-CAGGTTGGCACAAAG
*
69764089 CCTTAATCA
1 CCATAATCA
69764098 AAATAATTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (22 bp):
CCATAATCAGGTTGGCACAAAG
Found at i:69764643 original size:27 final size:27
Alignment explanation
Indices: 69764612--69764746 Score: 189
Period size: 27 Copynumber: 5.0 Consensus size: 27
69764602 GGGGCAAAAT
* * * *
69764612 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69764639 TGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69764666 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69764693 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69764720 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
69764747 AATAATTTTG
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:69764768 original size:81 final size:81
Alignment explanation
Indices: 69764607--69764783 Score: 178
Period size: 81 Copynumber: 2.2 Consensus size: 81
69764597 CCCTAGGGGC
* * * **
69764607 AAAATGGTAATTTTACCCCACAAGGGTATCTCTGTAATTCTACCCTACAGGGGTATTTCGGTATT
1 AAAACGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATATT
**
69764672 TCTACCCTACAAGGGT
66 TCTACAATACAAGGGT
*** * * * *
69764688 ATTTCGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAAT
1 AAAACGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAAT-A-
* *
69764753 TTTGTA-AAT-CGAGGGT
64 TTTCTACAATACAAGGGT
69764769 AAAACGGTAATTCTA
1 AAAACGGTAATTCTA
69764784 TAAATTGGGG
Statistics
Matches: 75, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
81 68 0.91
82 2 0.03
83 5 0.07
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (81 bp):
AAAACGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATATT
TCTACAATACAAGGGT
Found at i:69768477 original size:14 final size:14
Alignment explanation
Indices: 69768460--69768489 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69768450 TGTTTTATAT
69768460 TATAATATAACATA
1 TATAATATAACATA
*
69768474 TATAATATAATATA
1 TATAATATAACATA
69768488 TA
1 TA
69768490 ATTTAGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (14 bp):
TATAATATAACATA
Found at i:69773998 original size:28 final size:27
Alignment explanation
Indices: 69773937--69774006 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
69773927 ATAGTGAGTC
*
69773937 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
69773964 CGCACACTTAGTGCTATATGATCCAACT
1 CGCACACTTAGTGCTATATAAT-CAACT
69773992 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69774007 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:69788504 original size:48 final size:48
Alignment explanation
Indices: 69788444--69788741 Score: 461
Period size: 48 Copynumber: 6.2 Consensus size: 48
69788434 CGGCCACAAT
*
69788444 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
69788492 ATATACATATCTCATACATATTTCACATTAGCCATTCAGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* * ** *
69788540 ATATATATATCTTATACATATTTCATGTTAGCCATTCGGCTTTACCAT
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
69788588 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* * *
69788636 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCGC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
69788684 ATATACATATCTCATACATATTTCACACTAGCCATTCTGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
69788732 ACATATATAT
1 ATATACATAT
69788742 ATTTATCTTG
Statistics
Matches: 225, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 225 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:69791885 original size:27 final size:26
Alignment explanation
Indices: 69791829--69791940 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
69791819 AGGAAGCGTC
* * *
69791829 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
69791856 CTGGTGGCTCTGCTACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
69791883 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
69791911 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
69791937 CTGG
1 CTGG
69791941 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:69791933 original size:54 final size:54
Alignment explanation
Indices: 69791829--69791940 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
69791819 AGGAAGCGTC
* *
69791829 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCTACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCTACATATATCTGTT
* *
69791883 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTG-TCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCT-ACATATATCTGTT
69791937 CTGG
1 CTGG
69791941 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCTACATATATCTGTT
Found at i:69797837 original size:40 final size:39
Alignment explanation
Indices: 69797694--69797862 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 39
69797684 GAAATTGAAT
* * * ** *
69797694 TATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAAT
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-GAGTGAC
* * *
69797734 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
69797774 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
69797814 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
69797854 TATATCCGG
1 TATATCCGG
69797863 TTATATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.04
40 102 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:69797858 original size:80 final size:80
Alignment explanation
Indices: 69797692--69797862 Score: 204
Period size: 80 Copynumber: 2.1 Consensus size: 80
69797682 GAGAAATTGA
* *
69797692 ATTATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAG
1 ATTATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAG
69797757 GCAATTGTGCTAGTG
66 GCAATTGTGCTAGTG
** * * ** *
69797772 GCTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGA
1 ATTATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGA
*
69797835 AGGCATTTGTGC-ACGTG
64 AGGCAATTGTGCTA-GTG
69797852 ATTATATCCGG
1 ATTATATCCGG
69797863 TTATATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
79 5 0.07
80 71 0.93
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATTATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAG
GCAATTGTGCTAGTG
Found at i:69802013 original size:43 final size:43
Alignment explanation
Indices: 69801947--69802031 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
69801937 AAATCATACA
* *
69801947 ATGCCAACGTCCCAGACATGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
69801990 ATGCC-ACTGTCCCAGACAGGGTCTTACTCGTAAACACATATC
1 ATGCCAAC-GTCCCAGACAGGGTCTTACTCGTAAACACATATC
69802032 AGAATCACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:69805940 original size:29 final size:29
Alignment explanation
Indices: 69805908--69806043 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
69805898 ATACCCTTCG
** * *
69805908 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
69805937 AGCTTGCACACGTAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69805966 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
69805995 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69806024 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
69806044 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:69815681 original size:16 final size:16
Alignment explanation
Indices: 69815644--69815684 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
69815634 CTTCTTCCTC
*
69815644 TCTTTTTCCTCCATTT
1 TCTTTTTCTTCCATTT
*
69815660 TC--TTTCTTCCTTTT
1 TCTTTTTCTTCCATTT
69815674 TCTTTTTCTTC
1 TCTTTTTCTTC
69815685 TAGCTGAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.57
16 9 0.43
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.68
Consensus pattern (16 bp):
TCTTTTTCTTCCATTT
Found at i:69820777 original size:54 final size:54
Alignment explanation
Indices: 69820740--69820872 Score: 189
Period size: 54 Copynumber: 2.5 Consensus size: 54
69820730 GGTCTCTCGG
*
69820740 TAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCAACAAGGGTATTTTGA
1 TAATTTTACCCTACAGGGGTATTTCAGTATTTCTACCCAACAAGGGTATTTTGA
* * *
69820794 T-ATTTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGA
1 TAATTT-TACCCTACAGGGGTATTTCAGTATTTCTACCCAACAAGGGTATTTTGA
* *
69820848 TAATTCTACCCTACA-TGGTATTTCA
1 TAATTTTACCCTACAGGGGTATTTCA
69820873 ATAATTTTGT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 13 0.19
54 54 0.77
55 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (54 bp):
TAATTTTACCCTACAGGGGTATTTCAGTATTTCTACCCAACAAGGGTATTTTGA
Found at i:69820843 original size:27 final size:27
Alignment explanation
Indices: 69820712--69820878 Score: 142
Period size: 27 Copynumber: 6.2 Consensus size: 27
69820702 GGGTAAAATG
* * * * *
69820712 GTAATTTTACCCCACAAGGGTCTCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
69820739 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
69820766 GTATTTCTACCCAACAAGGGTATTT-T
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
69820792 GATATTTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
69820820 GTAATTCTACCCTACAAGGGTATTT-T
1 GTAATTCTACCCTACAAGGGTATTTCA
*
69820846 GATAATTCTACCCTAC-ATGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
69820873 ATAATT
1 GTAATT
69820879 TTGTAAATCG
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 15 0.13
27 100 0.86
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:69820976 original size:27 final size:26
Alignment explanation
Indices: 69820927--69821189 Score: 160
Period size: 27 Copynumber: 9.8 Consensus size: 26
69820917 GGATACTTTG
* *
69820927 GTAATTTTTACAAATCGATGGTATTTCA
1 GTAA-TTTTACAAAT-GAGGGTATTTTA
69820955 GTAATTTTACAAACTGAGGGTA-TTTA
1 GTAATTTTACAAA-TGAGGGTATTTTA
* * *
69820981 GGTAATTTCACAAATCAGGGGTATTTTG
1 -GTAATTTTACAAATGA-GGGTATTTTA
* *
69821009 GTAATTTTACAAATTAGGGGTATTTTG
1 GTAATTTTACAAATGA-GGGTATTTTA
** **
69821036 GTAATTTTGTAAACCAAGGGTATTTT-
1 GTAATTTTACAAA-TGAGGGTATTTTA
* *
69821062 GTTAATTTTACAAGTCGA--GTATTTCA
1 G-TAATTTTACAAAT-GAGGGTATTTTA
* * *
69821088 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAATGA-GGGTATTTTA
* *
69821115 GTAATTTTACAAATCAGGGGTATTTTG
1 GTAATTTTACAAATGA-GGGTATTTTA
* **
69821142 GTAATTCTACCCTAT-AGGGGTATTTTA
1 GTAATTTTA-CAAATGA-GGGTATTTTA
*
69821169 GTAATTTCAC-AATCGAGGGTA
1 GTAATTTTACAAAT-GAGGGTA
69821190 AAACAGTAAT
Statistics
Matches: 191, Mismatches: 30, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
24 1 0.01
25 19 0.10
26 13 0.07
27 146 0.76
28 12 0.06
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAATGAGGGTATTTTA
Found at i:69821006 original size:54 final size:53
Alignment explanation
Indices: 69820946--69821189 Score: 214
Period size: 54 Copynumber: 4.6 Consensus size: 53
69820936 ACAAATCGAT
*
69820946 GGTATTTCAGTAATTTTACAAACTGAGGGTATTTAGGTAATTTCACAAATCAGG
1 GGTATTTTAGTAATTTTACAAA-TGAGGGTATTTAGGTAATTTCACAAATCAGG
* * * *** * *
69821000 GGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTAGTAATTTTACAAATGA-GGGTATTTAGGTAATTTCACAAATCAGG
*
69821054 GGTATTTT-GTTAATTTTACAAGTCGA--GTATTTCA-GTAATTTCACAAATCAGG
1 GGTATTTTAG-TAATTTTACAAAT-GAGGGTATTT-AGGTAATTTCACAAATCAGG
* * * **
69821106 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAA-TTCTACCCTAT-AGG
1 GGTATTTTAGTAATTTTACAAATGA-GGGTATTTAGGTAATTTC-A-CAAATCAGG
*
69821160 GGTATTTTAGTAATTTCAC-AATCGAGGGTA
1 GGTATTTTAGTAATTTTACAAAT-GAGGGTA
69821190 AAACAGTAAT
Statistics
Matches: 153, Mismatches: 25, Indels: 25
0.75 0.12 0.12
Matches are distributed among these distances:
51 1 0.01
52 39 0.25
53 15 0.10
54 94 0.61
55 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (53 bp):
GGTATTTTAGTAATTTTACAAATGAGGGTATTTAGGTAATTTCACAAATCAGG
Found at i:69821127 original size:133 final size:135
Alignment explanation
Indices: 69820899--69821175 Score: 364
Period size: 133 Copynumber: 2.1 Consensus size: 135
69820889 AGGGTAAAAC
* * * *
69820899 GGTAATTCTGTAAATCTAGGATACTTTGGTAATTTTTACAAATCGATGGTATTTCAGTAATTTTA
1 GGTAATTTTGTAAACCAAGGATACTTTGGTAATTTTTACAAATCGA-GGTATTTCAGTAATTTCA
* *
69820964 CAAACTGAGGGTATTTAGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAA-ATTAGGG
65 CAAACAGAGGGTATTTAGGTAATTTCACAAATCAGGGGTATTTTGGTAATTCTACAATA-TAGGG
69821028 GTATTTT
129 GTATTTT
* * * *
69821035 GGTAATTTTGTAAACCAAGGGTATTTTGTTAA-TTTTACAAGTCGA-GTATTTCAGTAATTTCAC
1 GGTAATTTTGTAAACCAAGGATACTTTGGTAATTTTTACAAATCGAGGTATTTCAGTAATTTCAC
* * **
69821098 AAATCAG-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACCCTATAGGGG
66 AAA-CAGAGGGTATTTAGGTAATTTCACAAATCAGGGGTATTTTGGTAATTCTACAATATAGGGG
69821162 TATTTT
130 TATTTT
*
69821168 AGTAATTT
1 GGTAATTT
69821176 CACAATCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
133 83 0.67
134 3 0.02
135 12 0.10
136 26 0.21
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (135 bp):
GGTAATTTTGTAAACCAAGGATACTTTGGTAATTTTTACAAATCGAGGTATTTCAGTAATTTCAC
AAACAGAGGGTATTTAGGTAATTTCACAAATCAGGGGTATTTTGGTAATTCTACAATATAGGGGT
ATTTT
Found at i:69821163 original size:106 final size:104
Alignment explanation
Indices: 69820946--69821185 Score: 299
Period size: 106 Copynumber: 2.2 Consensus size: 104
69820936 ACAAATCGAT
* * *
69820946 GGTATTTCAGTAATTTTACAAACTGAGGGTATTTAGGTAATTTCACAAATCAGGGGTATTTTGGT
1 GGTATTTTAGTAATTTCACAATC-GA--GTATTTAGGTAATTTCACAAATCAGGGGTATTTTGGT
* *
69821011 AATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAACCAAG
63 AATTTTACAAATCAGGGGTATTTTGGTAA-TTTCTAAACCAAG
*
69821054 GGTATTTT-GTTAATTTTACAAGTCGAGTATTTCA-GTAATTTCACAAATCAGGGGTATTTTGGT
1 GGTATTTTAG-TAATTTCACAA-TCGAGTATTT-AGGTAATTTCACAAATCAGGGGTATTTTGGT
*
69821117 AATTTTACAAATCAGGGGTATTTTGGTAA-TTCT-ACCCTATAGG
63 AATTTTACAAATCAGGGGTATTTTGGTAATTTCTAAACC-A-A-G
69821160 GGTATTTTAGTAATTTCACAATCGAG
1 GGTATTTTAGTAATTTCACAATCGAG
69821186 GGTAAAACAG
Statistics
Matches: 119, Mismatches: 6, Indels: 17
0.84 0.04 0.12
Matches are distributed among these distances:
103 3 0.03
104 4 0.03
105 6 0.05
106 82 0.69
107 3 0.03
108 20 0.17
109 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (104 bp):
GGTATTTTAGTAATTTCACAATCGAGTATTTAGGTAATTTCACAAATCAGGGGTATTTTGGTAAT
TTTACAAATCAGGGGTATTTTGGTAATTTCTAAACCAAG
Found at i:69821197 original size:26 final size:26
Alignment explanation
Indices: 69821168--69821248 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
69821158 GGGGTATTTT
69821168 AGTAATTT-CACAATCGAGGGTAAAAC
1 AGTAATTTGCA-AATCGAGGGTAAAAC
*
69821194 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAA-TTTGCAAATCGAGGGTAAAAC
* * *
69821221 AGTAATTCCGTAAATCAAGGGTAAAAC
1 AGTAATT-TGCAAATCGAGGGTAAAAC
69821248 A
1 A
69821249 ATGATTCTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 7 0.14
27 41 0.84
28 1 0.02
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (26 bp):
AGTAATTTGCAAATCGAGGGTAAAAC
Found at i:69821261 original size:27 final size:27
Alignment explanation
Indices: 69821179--69821267 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
69821169 GTAATTTCAC
*
69821179 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
69821206 AATCGAGGGTAAAACAGTAATTCCGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * *
69821233 AATCAAGGGTAAAACAATGATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
69821260 AATTGAGG
1 AATCGAGG
69821268 ATACTTTGGT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:69822990 original size:24 final size:24
Alignment explanation
Indices: 69822963--69823021 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
69822953 TTGGAGGCCT
*
69822963 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
**
69822987 AGCCCTTTTCGGTAAACTAGGGCAA
1 AGCCCTTTT-AATAAACTAGGGCAA
69823012 AGCCCTTTTA
1 AGCCCTTTTA
69823022 GCATTTCCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.17
24 5 0.17
25 19 0.66
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:69823256 original size:27 final size:27
Alignment explanation
Indices: 69823225--69823449 Score: 236
Period size: 27 Copynumber: 8.3 Consensus size: 27
69823215 AGGGCAAAAT
* *
69823225 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
69823252 AGTAATTCTACCCTACAAAGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
69823279 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
69823306 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
69823333 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
69823360 GGCAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* ** * * *
69823387 AGTAATTCAACCCTTCAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
69823414 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
69823441 AATAATTTT
1 GGTAATTTT
69823450 GTAAATCGAG
Statistics
Matches: 168, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 4 0.02
27 161 0.96
28 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:69823288 original size:54 final size:54
Alignment explanation
Indices: 69823225--69823440 Score: 270
Period size: 54 Copynumber: 4.0 Consensus size: 54
69823215 AGGGCAAAAT
* * * * **
69823225 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAAGGTATTTC
1 GGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
69823279 GGTATTTTTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTC
1 GGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
69823333 GGTATTTCTACCCTACAAGGGTATTTCGGCAATTCTACCCTACAGGGGTATTTT
1 GGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * ** * * * *
69823387 AGTAATTCAACCCTTCAGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTC
1 GGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
69823441 AATAATTTTG
Statistics
Matches: 142, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 142 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:69823349 original size:81 final size:81
Alignment explanation
Indices: 69823225--69823428 Score: 264
Period size: 81 Copynumber: 2.5 Consensus size: 81
69823215 AGGGCAAAAT
* * * * * * *
69823225 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAAGGTATTTCGGTATTTTTAC
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAAGGTATTTCGGCAATTCTAC
69823290 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
69823306 GGTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGCAATTCTAC
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAAGGTATTTCGGCAATTCTAC
* *
69823371 CCTACAGGGGTATTTT
66 CCTACAAGGGTATTTC
* ** * *
69823387 AGTAATTCAACCCTTCAGGGGTATTTTGGTAATTCTACCCTA
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTA
69823429 TAGGGGTATT
Statistics
Matches: 106, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (81 bp):
GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAAGGTATTTCGGCAATTCTAC
CCTACAAGGGTATTTC
Found at i:69823462 original size:27 final size:27
Alignment explanation
Indices: 69823432--69823548 Score: 69
Period size: 27 Copynumber: 4.3 Consensus size: 27
69823422 TACCCTATAG
69823432 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAATAATTTTGTAAATCGA
*** * * *
69823459 GGGTAAAACGATAATTCTGTAAATCCA
1 GGGTATTTCAATAATTTTGTAAATCGA
* **
69823486 GGATACTTT-GGTAATTTT-TACAAATCGA
1 GGGTA-TTTCAATAATTTTGT--AAATCGA
* * *
69823514 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAATAATTTTGTAAATC-GA
69823541 GGGTATTT
1 GGGTATTT
69823549 TGGTAATTTC
Statistics
Matches: 68, Mismatches: 16, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
26 2 0.03
27 48 0.71
28 18 0.26
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTGTAAATCGA
Found at i:69823701 original size:27 final size:27
Alignment explanation
Indices: 69823492--69823709 Score: 237
Period size: 27 Copynumber: 8.0 Consensus size: 27
69823482 TCCAGGATAC
69823492 TTTGGTAATTTTTACAAATC-GAGGGTAT
1 TTTGGTAA-TTTTACAAATCAG-GGGTAT
* * *
69823520 TTTAGTAATTTTGCAAA-CTGAGGGTAT
1 TTTGGTAATTTTACAAATCAG-GGGTAT
*
69823547 TTTGGTAATTTCACAAATCAGGGGTAT
1 TTTGGTAATTTTACAAATCAGGGGTAT
69823574 TTTGGTAATTTTACAAA-CTAGGGGTAT
1 TTTGGTAATTTTACAAATC-AGGGGTAT
** * *
69823601 TTTGGTAATTTTGTAAACCAAGGGTAT
1 TTTGGTAATTTTACAAATCAGGGGTAT
* *
69823628 TTTGATAATTTTACAAGTC-GAGGGTAT
1 TTTGGTAATTTTACAAATCAG-GGGTAT
* * *
69823655 TTTAGTAATTTCACAGATCAGGGGTAT
1 TTTGGTAATTTTACAAATCAGGGGTAT
*
69823682 TTTGGTAATTTCACAAATCAGGGGTAT
1 TTTGGTAATTTTACAAATCAGGGGTAT
69823709 T
1 T
69823710 CTTTTAATTC
Statistics
Matches: 161, Mismatches: 23, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
26 2 0.01
27 148 0.92
28 11 0.07
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
TTTGGTAATTTTACAAATCAGGGGTAT
Found at i:69823707 original size:81 final size:80
Alignment explanation
Indices: 69823514--69823751 Score: 225
Period size: 81 Copynumber: 2.9 Consensus size: 80
69823504 TACAAATCGA
* * * *
69823514 GGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTGCAAACAG-GGGTATTTTGATAATTTCACAAATCAGGGGTATTTTAG
*
69823579 TAATTTTACAAACTAG
65 TAATTTCACAAACTAG
* * * *
69823595 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGATAATTTTACAAGTC-GAGGGTATTTTA
1 GGGTATTTTGGTAATTTTGCAAA-CAGGGGTATTTTGATAATTTCACAAATCAG-GGGTATTTTA
*
69823659 GTAATTTCACAGA-TCAG
64 GTAATTTCACAAACT-AG
** * **
69823676 GGGTATTTTGGTAATTTCACAAATCAGGGGTATTCTT-TTAA-TTCTACCCTAT-AGGGGTATTT
1 GGGTATTTTGGTAATTTTGCAAA-CAGGGGTATT-TTGATAATTTC-A-CAAATCAGGGGTATTT
*
69823738 CAGTAATTTCACAA
62 TAGTAATTTCACAA
69823752 TCGAGGCTAA
Statistics
Matches: 128, Mismatches: 22, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
80 4 0.03
81 118 0.92
82 6 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTGCAAACAGGGGTATTTTGATAATTTCACAAATCAGGGGTATTTTAGT
AATTTCACAAACTAG
Found at i:69823770 original size:26 final size:26
Alignment explanation
Indices: 69823738--69823817 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
69823728 AGGGGTATTT
69823738 CAGTAATTT-CACAATCGAGGCTAAAA
1 CAGTAATTTGCA-AATCGAGGCTAAAA
* * *
69823764 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAA-TTTGCAAATCGAGGCTAAAA
* * *
69823791 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CAGTAATT-TGCAAATCGAGGCTAAAA
69823818 TAGTGATTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.15
27 38 0.83
28 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.26
Consensus pattern (26 bp):
CAGTAATTTGCAAATCGAGGCTAAAA
Found at i:69823783 original size:27 final size:27
Alignment explanation
Indices: 69823750--69823841 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
69823740 GTAATTTCAC
* * *
69823750 AATCGAGGCTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
69823777 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * *
69823804 AATCAAGGGTAAAATAGTGATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
69823831 AATTGAGGGTA
1 AATCGAGGGTA
69823842 CTTTAGTAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:69826284 original size:24 final size:25
Alignment explanation
Indices: 69826257--69826308 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
69826247 GCCTAGCCTC
*
69826257 TTTT-AATAACTGGGGCAAAGCCCT
1 TTTTGAATAACTAGGGCAAAGCCCT
**
69826281 TTTTGGTTAACTAGGGCAAAGCCCT
1 TTTTGAATAACTAGGGCAAAGCCCT
69826306 TTT
1 TTT
69826309 AGCATTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (25 bp):
TTTTGAATAACTAGGGCAAAGCCCT
Found at i:69826657 original size:81 final size:81
Alignment explanation
Indices: 69826515--69826664 Score: 246
Period size: 81 Copynumber: 1.9 Consensus size: 81
69826505 GGCAAAATGG
* * *
69826515 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGCATTTCTACCC
1 TAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCC
69826580 TACAAGGCTATTTCGA
66 TACAAGGCTATTTCGA
* * *
69826596 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCC
69826661 TACA
66 TACA
69826665 GAAACAGAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (81 bp):
TAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGCAATTCTACCC
TACAAGGCTATTTCGA
Found at i:69826665 original size:27 final size:27
Alignment explanation
Indices: 69826513--69826664 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
69826503 GGGGCAAAAT
* * *
69826513 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69826540 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
69826567 GGCATTTCTACCCTACAAGGCTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69826594 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69826621 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
69826648 GGTAATTCTACCCTACA
1 GGTAATTCTACCCTACA
69826665 GAAACAGAAT
Statistics
Matches: 109, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:69827494 original size:891 final size:891
Alignment explanation
Indices: 69825773--69827537 Score: 3068
Period size: 891 Copynumber: 2.0 Consensus size: 891
69825763 TGCAATTAAA
* *
69825773 AGAAACAGAAACAGTAGTGTGGCCATCTCCGAGCCCCTCGCAGCTCTGAACCGTTTAAGGCTGGA
1 AGAAACAGAAACAGTAGTGTGGCCATCTCCGAGCCCCTCGCAGCTCCGAACCGTCTAAGGCTGGA
*
69825838 AATTACCTGAAAGGTTAATAAATAGGGCGAGTTTACAAAAACTCAGTGTGTAATCCCAATAACAG
66 AATTACCTGAAAGGTTAATAAATAGGGCGAGTTTACAAAAACTCAGTGTGTAATCCCAATAACAA
* * * *
69825903 ACAAACAGTGAATAACACGGTATCAGTACAATCTGGGCCAAAGCCCTATTCAGTCTCGACATATA
131 ACAAACAGCGAATAACACAGTATCAGTACAATCTAGGCCAAAGCCCTATTCAATCTCGACATATA
*
69825968 CTAGGGCGAAGCCTTTCGTTTAACGGTTACTAGGCCGAAGCCTTTTCATAAATCATATAACTAGG
196 CTAGGGCGAAGCCTTTCGTTTAACGATTACTAGGCCGAAGCCTTTTCATAAATCATATAACTAGG
69826033 CCGAAGCCTTTACTGAAAACGATATGGCCCATAGGCCCATTTCACTATCACATGAAATACCAATG
261 CCGAAGCCTTTACTGAAAACGATATGGCCCATAGGCCCATTTCACTATCACATGAAATACCAATG
* * *
69826098 CATGTATGCAAGCCCATTTGGAGAGACTACTTAACCCACCATCCGCTACTCTCCTCCCGTACCAA
326 AATGTATGCAAGCCCATTTGGAGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGTACCAA
*
69826163 CCAAGCTCTCCATGTGGGGAATAACTTAACCCACCCAACCAAACTCTCCATTGGCAGCATAGCTA
391 CCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCATTGGCAGCATAGCTA
* *
69826228 CTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTGGTTAACT
456 CTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAGGTAAACT
* *
69826293 AGGGCAAAGCCCTTTTAGCATTTCCTTCATTTTTATAAAACCCAACCCATGCAACATGTCATGTA
521 AGGACAAAGCCCTTTTAGCACTTCCTTCATTTTTATAAAACCCAACCCATGCAACATGTCATGTA
* *
69826358 TGCAGAATGTCATGCCCATATTTGAATCAAACAATCACAATCAAGTCATTCATATCACCAACATA
586 TGCAGAATGTCATGCCCATATTTAAATCAAACAATCACAACCAAGTCATTCATATCACCAACATA
* *
69826423 TATTCACAATGAAATCCGTCAACCACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAACAG
651 TATTCACAATCAAATCCGTCAACCACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAACAA
*
69826488 TCATTTAACACCCTAGGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCC
716 TCATTTAACACCCTAGGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCC
69826553 TACAGGGGTATTTCGGCATTTCTACCCTACAAGGCTATTTCGATAATTCTACCCTACAAGGGTAT
781 TACAGGGGTATTTCGGCATTTCTACCCTACAAGGCTATTTCGATAATTCTACCCTACAAGGGTAT
*
69826618 TTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAC
846 TTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC
* *
69826664 AGAAACAGAATCAGTAGTGTGGCCATCTCCGAGCCCCTCGCAGCTCCGATCCGTCTAAGGCTGGA
1 AGAAACAGAAACAGTAGTGTGGCCATCTCCGAGCCCCTCGCAGCTCCGAACCGTCTAAGGCTGGA
* * * *
69826729 AATTACCTGAAAGGTTAATAAATAGGGTGAGTTTACGAAAACTCAGTGTGTAATCTCAATAAGAA
66 AATTACCTGAAAGGTTAATAAATAGGGCGAGTTTACAAAAACTCAGTGTGTAATCCCAATAACAA
*
69826794 ACAAATAGCGAATAACACAGTATCAGTACAATCTAGGCCAAAGCCCTATTCAATCTCGACATATA
131 ACAAACAGCGAATAACACAGTATCAGTACAATCTAGGCCAAAGCCCTATTCAATCTCGACATATA
* * *
69826859 CT-GGGCCGAAGCCTTTCGTTTAACGATTACTGGGCCGAAGCCTTTTCATAAATCTTATCACTAG
196 CTAGGG-CGAAGCCTTTCGTTTAACGATTACTAGGCCGAAGCCTTTTCATAAATCATATAACTAG
*
69826923 GCCGAAGCCTTTACT-ATAAACGATATGGCCCATAGGCCCATTTCACTGTCACATGAAATACCAA
260 GCCGAAGCCTTTACTGA-AAACGATATGGCCCATAGGCCCATTTCACTATCACATGAAATACCAA
* * *
69826987 TGAATGTATGCAAGCCGATTTGGGGAGATTACTCAACCCACCATCCGCTACTCTCCACCCGTACC
324 TGAATGTATGCAAGCCCATTTGGAGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGTACC
69827052 AACCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCATTGGCAGCATAGC
389 AACCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCATTGGCAGCATAGC
*
69827117 TGCTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAGGTAAA
454 TACTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAGGTAAA
*
69827182 CTAGGACAAAGCCCTTTTAGCACTTCC-TCTATTTTTATCAAACCCAACCCATGCAACATGTCAT
519 CTAGGACAAAGCCCTTTTAGCACTTCCTTC-ATTTTTATAAAACCCAACCCATGCAACATGTCAT
*
69827246 GTATGCAGAATGTCATGCCCATATTTAAATCAAGCAATCACAACCAAGTCATTCATATCACCAAC
583 GTATGCAGAATGTCATGCCCATATTTAAATCAAACAATCACAACCAAGTCATTCATATCACCAAC
* *
69827311 ATATATTCACAATCAAATCCGTCAACCACAGAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAG
648 ATATATTCACAATCAAATCCGTCAACCACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAA
*
69827376 CAATCATTTAATACCCTAGGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCGATAATTCTA
713 CAATCATTTAACACCCTAGGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCGATAATTCTA
* * *
69827441 CCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGG
778 CCCTACAGGGGTATTTCGGCATTTCTACCCTACAAGGCTATTTCGATAATTCTACCCTACAAGGG
*
69827506 TATTTCGGTAATTCTACCCTACAAGGGTATTT
843 TATTTCAGTAATTCTACCCTACAAGGGTATTT
69827538 TAATAATTTT
Statistics
Matches: 825, Mismatches: 46, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
890 6 0.01
891 819 0.99
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (891 bp):
AGAAACAGAAACAGTAGTGTGGCCATCTCCGAGCCCCTCGCAGCTCCGAACCGTCTAAGGCTGGA
AATTACCTGAAAGGTTAATAAATAGGGCGAGTTTACAAAAACTCAGTGTGTAATCCCAATAACAA
ACAAACAGCGAATAACACAGTATCAGTACAATCTAGGCCAAAGCCCTATTCAATCTCGACATATA
CTAGGGCGAAGCCTTTCGTTTAACGATTACTAGGCCGAAGCCTTTTCATAAATCATATAACTAGG
CCGAAGCCTTTACTGAAAACGATATGGCCCATAGGCCCATTTCACTATCACATGAAATACCAATG
AATGTATGCAAGCCCATTTGGAGAGACTACTCAACCCACCATCCGCTACTCTCCACCCGTACCAA
CCAAGCTCTCCATGTGGGGAATAACTCAACCCACCCAACCAAACTCTCCATTGGCAGCATAGCTA
CTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAGGTAAACT
AGGACAAAGCCCTTTTAGCACTTCCTTCATTTTTATAAAACCCAACCCATGCAACATGTCATGTA
TGCAGAATGTCATGCCCATATTTAAATCAAACAATCACAACCAAGTCATTCATATCACCAACATA
TATTCACAATCAAATCCGTCAACCACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAACAA
TCATTTAACACCCTAGGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCC
TACAGGGGTATTTCGGCATTTCTACCCTACAAGGCTATTTCGATAATTCTACCCTACAAGGGTAT
TTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC
Found at i:69827545 original size:27 final size:27
Alignment explanation
Indices: 69827406--69827537 Score: 192
Period size: 27 Copynumber: 4.9 Consensus size: 27
69827396 GGCAAAATGG
* * *
69827406 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
69827433 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
69827460 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
69827487 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
69827514 TAATTCTACCCTACAAGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
69827538 TAATAATTTT
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:69827545 original size:54 final size:54
Alignment explanation
Indices: 69827404--69827537 Score: 232
Period size: 54 Copynumber: 2.5 Consensus size: 54
69827394 GGGGCAAAAT
* * *
69827404 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
*
69827458 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
69827512 GGTAATTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
69827538 TAATAATTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:69827559 original size:27 final size:27
Alignment explanation
Indices: 69827529--69827737 Score: 124
Period size: 27 Copynumber: 7.7 Consensus size: 27
69827519 CTACCCTACA
*
69827529 AGGGTATTTTAATAATTTTGTAAATCG
1 AGGGTATTTTAGTAATTTTGTAAATCG
***
69827556 AGGGTAAAACT-GTAATTTTGTAAATTCG
1 AGGGT-ATTTTAGTAATTTTGTAAA-TCG
* * *
69827584 -GGATACTTTGGTAATTTT-TACAAATCG
1 AGGGTATTTTAGTAATTTTGT--AAATCG
*
69827611 AGGGTATTTTAGTAATTTTGCAAA-CTG
1 AGGGTATTTTAGTAATTTTGTAAATC-G
* ***
69827638 AGGGTATTTTGGTAATTTCACAAATC-
1 AGGGTATTTTAGTAATTTTGTAAATCG
* ** *
69827664 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTAGTAATTTTGTAAATCG
* * *
69827691 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTAGTAATTTTGTAAATCG
* *
69827719 ATGGTATTTTGGTAATTTT
1 AGGGTATTTTAGTAATTTT
69827738 ACAGGTTGAG
Statistics
Matches: 150, Mismatches: 20, Indels: 24
0.77 0.10 0.12
Matches are distributed among these distances:
26 6 0.04
27 118 0.79
28 26 0.17
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTGTAAATCG
Found at i:69827626 original size:55 final size:54
Alignment explanation
Indices: 69827567--69827789 Score: 193
Period size: 54 Copynumber: 4.1 Consensus size: 54
69827557 GGGTAAAACT
* * * * *
69827567 GTAATTTTGTAAATTCGGGATACTTTGGTAATTTTTACAAATC-GAGGGTATTTTA
1 GTAATTTTGCAAACT-GGGGTATTTTGGTAATTTTCACAAATCAG-GGGTATTTTA
*
69827622 GTAATTTTGCAAACTGAGGGTATTTTGGTAA-TTTCACAAATCAGGGGTATTTTG
1 GTAATTTTGCAAACTG-GGGTATTTTGGTAATTTTCACAAATCAGGGGTATTTTA
* ** * ** *
69827676 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTT-GTAAACCAATGGTATTTTG
1 GTAATTTTGCAAACT-GGGGTATTTTGGTAATTTTCACAAATCAGGGGTATTTTA
* *** ** *
69827730 GTAATTTTACAGGTTGAGGGTATTTCAGTAA-TTTCACAAATCAGGGGTATTTTG
1 GTAATTTTGCAAACTG-GGGTATTTTGGTAATTTTCACAAATCAGGGGTATTTTA
69827784 GTAATT
1 GTAATT
69827790 CTACCCTATA
Statistics
Matches: 140, Mismatches: 22, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.03
54 106 0.76
55 30 0.21
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
GTAATTTTGCAAACTGGGGTATTTTGGTAATTTTCACAAATCAGGGGTATTTTA
Found at i:69827680 original size:54 final size:54
Alignment explanation
Indices: 69827590--69827789 Score: 233
Period size: 54 Copynumber: 3.7 Consensus size: 54
69827580 TTCGGGATAC
* * *
69827590 TTTGGTAATTTTTACAAATC-GAGGGTATTTTAGTAATTTTGCAAACTGAGGGTAT
1 TTTGGTAA-TTTCACAAATCAG-GGGTATTTTGGTAATTTTACAAACTGAGGGTAT
69827645 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACT-AGGGGTAT
1 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTGA-GGGTAT
*** * ** ***
69827699 TTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAGGTTGAGGGTAT
1 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGTAT
**
69827753 TTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATT
1 TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATT
69827790 CTACCCTATA
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 111 0.91
55 10 0.08
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
TTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGTAT
Found at i:69827725 original size:81 final size:80
Alignment explanation
Indices: 69827590--69827789 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 80
69827580 TTCGGGATAC
* * **
69827590 TTTGGTAATTTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTTGGTAATT
1 TTTGGTAA-TTTTACAAATAG-GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATT
69827655 TCACAAATCAG-GGGTAT
64 TCACAAAT-AGAGGGTAT
* *
69827672 TTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTT
* ** *
69827737 TACAGGTTGAGGGTAT
65 CACAAATAGAGGGTAT
** *
69827753 TTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATT
1 TTTGGTAATTTTACAAAT-AGGGGTATTTTGGTAATT
69827790 CTACCCTATA
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
80 2 0.02
81 90 0.88
82 10 0.10
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (80 bp):
TTTGGTAATTTTACAAATAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTC
ACAAATAGAGGGTAT
Found at i:69827751 original size:27 final size:27
Alignment explanation
Indices: 69827590--69827789 Score: 183
Period size: 27 Copynumber: 7.4 Consensus size: 27
69827580 TTCGGGATAC
69827590 TTTGGTAATTTTTACAAA-TCGAGGGTAT
1 TTTGGTAA-TTTTACAAACT-GAGGGTAT
* *
69827618 TTTAGTAATTTTGCAAACTGAGGGTAT
1 TTTGGTAATTTTACAAACTGAGGGTAT
* *
69827645 TTTGGTAATTTCACAAA-TCAGGGGTAT
1 TTTGGTAATTTTACAAACTGA-GGGTAT
69827672 TTTGGTAATTTTACAAACT-AGGGGTAT
1 TTTGGTAATTTTACAAACTGA-GGGTAT
** ** *
69827699 TTTGGTAATTTTGTAAACCAATGGTAT
1 TTTGGTAATTTTACAAACTGAGGGTAT
***
69827726 TTTGGTAATTTTACAGGTTGAGGGTAT
1 TTTGGTAATTTTACAAACTGAGGGTAT
** * *
69827753 TTCAGTAATTTCACAAA-TCAGGGGTAT
1 TTTGGTAATTTTACAAACTGA-GGGTAT
69827780 TTTGGTAATT
1 TTTGGTAATT
69827790 CTACCCTATA
Statistics
Matches: 140, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.03
27 126 0.90
28 10 0.07
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACTGAGGGTAT
Found at i:69827806 original size:54 final size:54
Alignment explanation
Indices: 69827640--69827822 Score: 172
Period size: 54 Copynumber: 3.4 Consensus size: 54
69827630 GCAAACTGAG
** * *
69827640 GGTATTTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTA-CAAACTAGG
1 GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACCATA-TAGA
** *** * ** ** *
69827694 GGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTA-CAGGTTGA
1 GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACCATATAGA
* *
69827747 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTCTACCCTATAGA
1 -GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACCATATAGA
*
69827802 GGTATTTCAATAATTTCACAA
1 GGTATTTCAGTAATTTCACAA
69827823 TCGACGGTAA
Statistics
Matches: 103, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
53 2 0.02
54 97 0.94
55 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACCATATAGA
Found at i:69827841 original size:26 final size:26
Alignment explanation
Indices: 69827812--69827897 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
69827802 GGTATTTCAA
*
69827812 TAATTT-CACAATCGACGGTAAAACGG
1 TAATTTGCA-AATCGACGGTAAAACAG
* *
69827838 TAATTTTGTAAATCGAGGGTAAAACAG
1 TAA-TTTGCAAATCGACGGTAAAACAG
* *
69827865 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATT-TGCAAATCGACGGTAAAACAG
*
69827892 TGATTT
1 TAATTT
69827898 TATAAATTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.11
27 46 0.87
28 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (26 bp):
TAATTTGCAAATCGACGGTAAAACAG
Found at i:69827912 original size:27 final size:27
Alignment explanation
Indices: 69827821--69827904 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
69827811 ATAATTTCAC
* *
69827821 AATCGACGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
*
69827848 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
* *
69827875 AATCGAGGGTAAAACAGTGATTTTATA
1 AATCGAGGGTAAAACAGTAATTTTGTA
69827902 AAT
1 AAT
69827905 TGATGGTACT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTTTGTA
Found at i:69835474 original size:30 final size:30
Alignment explanation
Indices: 69835438--69835538 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
69835428 GACAAGATTG
* * *
69835438 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69835468 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69835496 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
69835525 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69835539 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:69840056 original size:40 final size:39
Alignment explanation
Indices: 69840011--69840140 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
69840001 CGGAATACAA
69840011 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
69840051 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
69840091 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
69840131 CCGGATATAA
1 CCGGATATAA
69840141 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:69842592 original size:42 final size:43
Alignment explanation
Indices: 69842515--69842606 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
69842505 TCCCGGACGT
* * **
69842515 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCTAGACAA
1 GGTCTTACAAGTAAATCAATATCGATGCCGATGTCCTAGACAA
*
69842558 GGTCTTACAAG-AAATCAGATAT-GATGCCGATGTCCTAGACAT
1 GGTCTTACAAGTAAATCA-ATATCGATGCCGATGTCCTAGACAA
69842600 GGTCTTA
1 GGTCTTA
69842607 TACATAAATC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.67
43 14 0.33
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (43 bp):
GGTCTTACAAGTAAATCAATATCGATGCCGATGTCCTAGACAA
Found at i:69847164 original size:40 final size:40
Alignment explanation
Indices: 69847062--69847245 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
69847052 AAATTGAATG
* * * * *
69847062 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
69847102 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
69847142 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCCAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
69847182 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
69847222 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
69847246 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 114 0.95
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:69849086 original size:46 final size:45
Alignment explanation
Indices: 69849019--69849238 Score: 235
Period size: 46 Copynumber: 4.8 Consensus size: 45
69849009 GTAACCCGCC
* ***
69849019 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATA
* * * *
69849065 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CATTGCATA
*** * * *
69849111 CATCTCTCGAACTCAGACTCAACTCAACGAGTTCAGACATTGCATC
1 CATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTGCATA
* * *
69849157 CATAAGTGAACTCGGACTCAACTCAATGAGTTCAGACATTTGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACA-TTGCATA
69849203 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69849239 TGCCCAAACA
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
45 32 0.22
46 87 0.59
47 27 0.18
48 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATA
Found at i:69851652 original size:15 final size:15
Alignment explanation
Indices: 69851632--69851672 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
69851622 CAAGAAAACT
69851632 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
69851647 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
69851662 -AGATAAAGAAA
1 GA-ATAAAGAAA
69851673 CCTAAGATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:69854682 original size:46 final size:46
Alignment explanation
Indices: 69854615--69854792 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
69854605 TGTAACCCGC
* * *
69854615 CCATAAGTGAAATCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* *
69854661 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** * * ** *
69854707 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* *
69854754 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
69854793 CCCAAACATC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:69855966 original size:31 final size:31
Alignment explanation
Indices: 69855925--69855988 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
69855915 CCTTTTCATA
*
69855925 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
69855956 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
69855987 TT
1 TT
69855989 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:69856234 original size:24 final size:24
Alignment explanation
Indices: 69856182--69856347 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
69856172 GCTTTATCAT
*
69856182 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69856207 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
69856231 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
69856254 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
69856278 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69856302 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69856325 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69856348 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69856258 original size:47 final size:48
Alignment explanation
Indices: 69856181--69856347 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
69856171 TGCTTTATCA
* *
69856181 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
69856230 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
69856277 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
69856324 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
69856348 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:69856282 original size:71 final size:71
Alignment explanation
Indices: 69856182--69856347 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
69856172 GCTTTATCAT
* *
69856182 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
69856246 GCCCTTTA
64 GCCCTTTA
* * *
69856254 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
69856319 CCTTTA
66 CCTTTA
69856325 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69856348 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:69856420 original size:9 final size:9
Alignment explanation
Indices: 69856406--69856462 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
69856396 ATCTCGTGTG
69856406 CATATCATA
1 CATATCATA
*
69856415 CATATCATGTG
1 CATATCA--TA
69856426 CATATCATA
1 CATATCATA
* *
69856435 CATGTCATGTG
1 CATATCA--TA
69856446 CATATCATA
1 CATATCATA
69856455 CATATCAT
1 CATATCAT
69856463 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:69856425 original size:20 final size:20
Alignment explanation
Indices: 69856402--69856464 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
69856392 GAACATCTCG
69856402 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
69856422 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
69856442 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
69856462 TGT
1 TGT
69856465 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:69856547 original size:25 final size:25
Alignment explanation
Indices: 69856501--69856548 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
69856491 ATATATAAAC
* * * *
69856501 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69856526 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69856549 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69857800 original size:27 final size:27
Alignment explanation
Indices: 69857709--69857792 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
69857699 GGGCATATTC
*
69857709 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
69857736 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
69857763 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
69857790 GTC
1 GTC
69857793 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:69857809 original size:27 final size:26
Alignment explanation
Indices: 69857709--69857802 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 26
69857699 GGGCATATTC
*
69857709 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
69857736 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
69857763 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
69857790 GTCTTTTTACCTA
1 GTCACTTTACCTA
69857803 ATAGGGGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
26 4 0.07
27 54 0.89
28 3 0.05
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:69857874 original size:27 final size:27
Alignment explanation
Indices: 69857843--69858047 Score: 142
Period size: 27 Copynumber: 7.5 Consensus size: 27
69857833 AAGGTGTTTT
*
69857843 GGTAAATTTACAAACCAAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTC
* ** *
69857870 AGTAATTTTGTAAACCAATGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTC
** * *
69857897 TATAATTTTTAGAAAGTCAAGGGTATTTC
1 GGTAA-TTTTACAAA-CCAAGGGTATTTC
* * ** ** * *
69857926 TGTAACTTTGTAAATTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTC
* ***
69857953 GGTAATTTTAAAAATTGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTC
* *
69857980 GGTAATTTCACAAACC-AGTGGTATTTT
1 GGTAATTTTACAAACCAAG-GGTATTTC
* * *
69858007 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTC
69858034 GGTAATTTTACAAA
1 GGTAATTTTACAAA
69858048 TTGAGGGTAT
Statistics
Matches: 141, Mismatches: 33, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 110 0.78
28 14 0.10
29 15 0.11
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAACCAAGGGTATTTC
Found at i:69858055 original size:27 final size:27
Alignment explanation
Indices: 69857944--69858083 Score: 158
Period size: 27 Copynumber: 5.2 Consensus size: 27
69857934 TGTAAATTAG
*
69857944 GGGTATTTTGGTAATTTTAAAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
* * **
69857971 GGGTATTTCGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATTGA
*
69857997 GTGGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTGGTAATTTTACAAATTGA
69858024 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATTGA
* ** *
69858052 GGGTATTTTTGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATTGA
69858079 GGGTA
1 GGGTA
69858084 AAATAGTAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.02
27 92 0.96
28 2 0.02
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:69858092 original size:27 final size:27
Alignment explanation
Indices: 69858062--69858337 Score: 219
Period size: 27 Copynumber: 9.8 Consensus size: 27
69858052 GGGTATTTTT
*
69858062 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
69858089 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
69858116 GTAATTCTATAAATCGACGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * * **
69858143 ATAATTTTGTAAATGGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATA
*
69858170 GTAATTCTGTAAGTCGAGGGTAAAACGGGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAA------T---A
* * *
69858206 TGGTAATTATGTAAATCGGGGGTAAAATG
1 --GTAATTCTGTAAATCGAGGGTAAAATA
* * *
69858235 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * **
69858262 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATA
* * **
69858289 GTACTTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATA
* *
69858316 GTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
69858338 CTTTGGTAAT
Statistics
Matches: 203, Mismatches: 35, Indels: 22
0.78 0.13 0.08
Matches are distributed among these distances:
27 180 0.89
32 1 0.00
38 22 0.11
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATA
Found at i:69858093 original size:81 final size:81
Alignment explanation
Indices: 69857941--69858094 Score: 193
Period size: 81 Copynumber: 1.9 Consensus size: 81
69857931 CTTTGTAAAT
***
69857941 TAGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 TAGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTAAAA
*
69858006 TGGTAATTTTACAAAC
66 TAGTAATTTTACAAAC
* ** *** *
69858022 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTTGTAATTTTGTAAATCGAG-GGTAAA
1 TAGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTAAA
69858086 ATAGTAATT
65 ATAGTAATT
69858095 CTGTAAATCA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 58 0.95
82 3 0.05
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTAAAA
TAGTAATTTTACAAAC
Done.