Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 233 of 770
Found at i:69858202 original size:38 final size:38
Alignment explanation
Indices: 69858160--69858232 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
69858150 TGTAAATGGA
* *
69858160 GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGG
1 GGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGG
* *
69858198 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAA
1 GGGTAAAACGGTAATTATGTAAATCGAGGGTAAAA
69858233 TGGTAATTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.23
Consensus pattern (38 bp):
GGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGG
Found at i:69858212 original size:92 final size:92
Alignment explanation
Indices: 69858106--69858289 Score: 233
Period size: 92 Copynumber: 2.0 Consensus size: 92
69858096 TGTAAATCAA
* * * ** *
69858106 GGGTAAAATAGTAATTCTATAAATCGACGGTAAAATAATAATTTTGTAAATGGAGGGTAAAACGG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAATAATAATTCTATAAATCAAGGGTAAAACAG
* * *
69858171 TAATTCTGTAAGTCGAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
* * ** **
69858198 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAATAATAATTCTATAAATCAAGGGTAAAACAG
69858263 TAATTCTATAAATCAAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
69858290 TACTTCTATA
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (92 bp):
GGGTAAAATAGTAATTATATAAATCGACGGTAAAATAATAATTCTATAAATCAAGGGTAAAACAG
TAATTCTATAAATCAAGGGTAAAACGG
Found at i:69858213 original size:65 final size:65
Alignment explanation
Indices: 69858134--69858260 Score: 175
Period size: 65 Copynumber: 2.0 Consensus size: 65
69858124 ATAAATCGAC
* * * *
69858134 GGTAAAATAATAATTTTGTAAAT-GGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGG
1 GGTAAAATAATAATTATGTAAATCGG-GGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACGG
69858198 G
65 G
** *
69858199 GGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC
1 GGTAAAATAATAATTATGTAAATCGGGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAAC
69858261 AGTAATTCTA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 52 0.96
66 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.27, T:0.27
Consensus pattern (65 bp):
GGTAAAATAATAATTATGTAAATCGGGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACGGG
Found at i:69858229 original size:146 final size:146
Alignment explanation
Indices: 69858062--69858337 Score: 399
Period size: 146 Copynumber: 1.9 Consensus size: 146
69858052 GGGTATTTTT
* * *
69858062 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
* * * * * * *
69858127 AATCGACGGTAAAATAATAATTTTGTAAATGGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTA
66 AATCAACGGTAAAACAATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTA
69858192 AAACGGGGGTAAAATG
131 AAACGGGGGTAAAATG
* *
69858208 GTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
* ** * *
69858273 AATCAAGGGTAAAACGGTACTTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTA
66 AATCAACGGTAAAACAATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTA
69858338 CTTTGGTAAT
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
146 113 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (146 bp):
GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
AATCAACGGTAAAACAATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTA
AAACGGGGGTAAAATG
Found at i:69858282 original size:119 final size:119
Alignment explanation
Indices: 69858070--69858316 Score: 332
Period size: 119 Copynumber: 2.1 Consensus size: 119
69858060 TTGTAATTTT
* * * *
69858070 GTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACG
1 GTAAAACGGGGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
* * * ** * *
69858135 GTAAAATAATAATTTTGTAAATGGAGGGTAAAACGGTAATTCTGTAAGTCGAGG
66 GTAAAACAATAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGG
* ** * *
69858189 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCAAGG
1 GTAAAACGGGGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
* *
69858254 GTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTACTTCTATAAATCGAGG
66 GTAAAACAATAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGG
69858308 GTAAAACGG
1 GTAAAACGG
69858317 TAATTATGTA
Statistics
Matches: 110, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
119 110 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (119 bp):
GTAAAACGGGGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
GTAAAACAATAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGG
Found at i:69858360 original size:54 final size:54
Alignment explanation
Indices: 69858198--69858364 Score: 199
Period size: 54 Copynumber: 3.1 Consensus size: 54
69858188 GGTAAAACGG
* *
69858198 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCAA
1 GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCGA
* * * ** * *
69858252 GGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTACTTCTATAAATCGA
1 GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCGA
*** * * *
69858306 GGGTAAAACGGTAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCGA
69858360 GGGTA
1 GGGTA
69858365 TTTCAATAAT
Statistics
Matches: 91, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.29
Consensus pattern (54 bp):
GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTATAAATCGA
Found at i:69865665 original size:19 final size:19
Alignment explanation
Indices: 69865628--69865665 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
69865618 ATTAGACAGG
*
69865628 TCATAAACGGTACAGATGC
1 TCATAAACAGTACAGATGC
69865647 TCATAAACAAGTACA-ATGC
1 TCATAAAC-AGTACAGATGC
69865666 CAATGTCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (19 bp):
TCATAAACAGTACAGATGC
Found at i:69865728 original size:43 final size:43
Alignment explanation
Indices: 69865669--69865782 Score: 135
Period size: 42 Copynumber: 2.7 Consensus size: 43
69865659 ACAATGCCAA
* *
69865669 TGTCCCAGAC-GTGGTCTTACATGTAATTCA-ATATCGATGCCTC
1 TGTCCCAGACAG-GGTCTTACATGTAAATCAGATA-CGATGCCGC
*
69865712 TGTCCCAGACAGGGTCTTACACG-AAATCAGATACGATGCCGC
1 TGTCCCAGACAGGGTCTTACATGTAAATCAGATACGATGCCGC
* * *
69865754 TATCCCAGACATGGTCTTATATGTAAATC
1 TGTCCCAGACAGGGTCTTACATGTAAATC
69865783 TCAATCAAGG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
42 32 0.52
43 28 0.46
44 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
TGTCCCAGACAGGGTCTTACATGTAAATCAGATACGATGCCGC
Found at i:69872575 original size:46 final size:46
Alignment explanation
Indices: 69872520--69872700 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
69872510 TAGGATGGTT
69872520 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
69872566 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
69872612 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
69872659 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69872701 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:69872681 original size:93 final size:93
Alignment explanation
Indices: 69872522--69872692 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
69872512 GGATGGTTGA
* *
69872522 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69872587 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69872615 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69872680 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69872693 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69875634 original size:15 final size:15
Alignment explanation
Indices: 69875614--69875682 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
69875604 GTATCTTGGG
69875614 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
69875629 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
69875644 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
69875659 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
69875674 TTTCTTTAT
1 TTTCTTTAT
69875683 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:69875683 original size:30 final size:30
Alignment explanation
Indices: 69875605--69875692 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
69875595 CATAGTATCG
* * * *
69875605 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
69875635 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
69875665 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
69875693 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:69878096 original size:46 final size:46
Alignment explanation
Indices: 69878046--69878221 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69878036 ATGGTTGGCA
69878046 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
69878092 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
69878139 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
69878185 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69878222 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:69878201 original size:93 final size:93
Alignment explanation
Indices: 69878042--69878213 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69878032 TAGGATGGTT
* *
69878042 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69878107 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
69878135 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69878200 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69878214 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69879906 original size:79 final size:79
Alignment explanation
Indices: 69879760--69879944 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 79
69879750 AAATCACATA
* * * ** * *
69879760 CCTTCAGAGTTTAA-CCGGATATAACTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATGA
1 CCTTCAG-GCTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATCA
69879824 TAACCCGCACAAATG
65 TAACCCGCACAAATG
* * *
69879839 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 CCTTCAGG-CTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATCA
* *
69879903 TAACTCGCACAATTG
65 TAACCCGCACAAATG
* *
69879918 CTTTCAGGCTTAGCCCGGATATCACAA
1 CCTTCAGGCTTAACCCGGATATCACAA
69879945 TTCACACATT
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
78 19 0.21
79 42 0.47
80 28 0.31
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (79 bp):
CCTTCAGGCTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATCAT
AACCCGCACAAATG
Found at i:69879908 original size:39 final size:40
Alignment explanation
Indices: 69879797--69879941 Score: 195
Period size: 39 Copynumber: 3.7 Consensus size: 40
69879787 CTCGTTCAAA
* * * * *
69879797 TGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* *
69879837 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
69879877 TGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
* *
69879916 TGCTTTCAGG-CTTAGCCCGGATATCA
1 TGCCTTCGGGACTTAGCCCGGATATCA
69879942 CAATTCACAC
Statistics
Matches: 94, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 51 0.54
40 43 0.46
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAAT
Found at i:69887546 original size:79 final size:79
Alignment explanation
Indices: 69887451--69887605 Score: 222
Period size: 79 Copynumber: 2.0 Consensus size: 79
69887441 CTCGTTCAAA
* **
69887451 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATATC
69887516 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
69887531 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCA
*
69887595 CAATTCGCACA
66 CAACTCGCACA
69887606 TTCATACACA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 25 0.37
79 33 0.49
80 9 0.13
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (79 bp):
GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:69887561 original size:39 final size:40
Alignment explanation
Indices: 69887451--69887605 Score: 206
Period size: 39 Copynumber: 3.9 Consensus size: 40
69887441 CTCGTTCAAA
* * *** * *
69887451 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
*
69887491 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
*
69887531 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
*
69887570 GCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACA
69887606 TTCATACACA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 62 0.60
40 41 0.40
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAATT
Found at i:69895124 original size:39 final size:39
Alignment explanation
Indices: 69895081--69895239 Score: 201
Period size: 39 Copynumber: 4.1 Consensus size: 39
69895071 ACTACTCGTT
* * * *
69895081 CAAATGCCTTCGGACATAGCCCGGTTATGATAACCCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATATCATAACTCGCA
* *
69895120 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATCATAACTCGCA
* *
69895160 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATATCATAACTCGCA
* * * *
69895199 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATATCATAACTCGCA
69895238 CA
1 CA
69895240 TTCATACACA
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 75 0.70
40 32 0.30
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATATCATAACTCGCA
Found at i:69895180 original size:79 final size:78
Alignment explanation
Indices: 69895048--69895239 Score: 233
Period size: 79 Copynumber: 2.4 Consensus size: 78
69895038 AAATCACATA
* * * ** * *
69895048 CCTTCGGAGTTTAA-CCGGATATAACTACTCGTTCAAATGCCTTCGGACATAGCCCGGTTATGAT
1 CCTTCGG-GCTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGACATAGCCCGGATATCAT
69895112 AACCCGCACAAATG
65 AACCCGCACAAATG
* * *
69895126 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
1 CCTTCGGG-CTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGACATAGCCCGGATATCAT
* *
69895191 AACTCGCACAATTG
65 AACCCGCACAAATG
* *
69895205 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAACCCGGATATCACAACTCGCACA
69895240 TTCATACACA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
77 1 0.01
78 36 0.37
79 61 0.62
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.24
Consensus pattern (78 bp):
CCTTCGGGCTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGACATAGCCCGGATATCATA
ACCCGCACAAATG
Found at i:69899981 original size:79 final size:79
Alignment explanation
Indices: 69899835--69900027 Score: 228
Period size: 79 Copynumber: 2.4 Consensus size: 79
69899825 AAATCACATA
* * * ** * * *
69899835 CCTTCGGAGTTTAA-CCGGATATAACTACTCGTTCAAATGCCTTCGGGACATAGCCTGGTTATGA
1 CCTTCGG-GCTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATCA
69899899 TAACCCGCACAAATG
65 TAACCCGCACAAATG
* *
69899914 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 CCTTCGGG-CTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATCA
* *
69899978 TAACTCGCACAATTG
65 TAACCCGCACAAATG
* *
69899993 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAACCCGGATATCACAACTCGCACA
69900028 TTCATACACA
Statistics
Matches: 98, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 26 0.27
79 44 0.45
80 28 0.29
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.25
Consensus pattern (79 bp):
CCTTCGGGCTTAACCCGGATATCACAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATCAT
AACCCGCACAAATG
Found at i:69899983 original size:39 final size:40
Alignment explanation
Indices: 69899849--69900027 Score: 209
Period size: 39 Copynumber: 4.5 Consensus size: 40
69899839 CGGAGTTTAA
* * ** * *
69899849 CCGGATATAACTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATCACAACTCGCACAATTGCCTTCGGGACTTAGC
* * * * * * *
69899889 CTGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATCACAACTCGCACAATTGCCTTCGGGACTTAGC
69899929 CCGGATATCACAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATCACAACTCGCACAATTGCCTTCGGGACTTAGC
*
69899968 CCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGC
1 CCGGATATCACAACTCGCACAATTGCCTTCGGGACTTAGC
*
69900007 CCGGATATCACAATTCGCACA
1 CCGGATATCACAACTCGCACA
69900028 TTCATACACA
Statistics
Matches: 119, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 62 0.52
40 57 0.48
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
CCGGATATCACAACTCGCACAATTGCCTTCGGGACTTAGC
Found at i:69905785 original size:18 final size:18
Alignment explanation
Indices: 69905762--69905799 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
69905752 TTAAGTTTCA
69905762 TTTTATTTACATGTGAAC
1 TTTTATTTACATGTGAAC
69905780 TTTTATTTACATGTGAAC
1 TTTTATTTACATGTGAAC
69905798 TT
1 TT
69905800 ACTAAGCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (18 bp):
TTTTATTTACATGTGAAC
Found at i:69915524 original size:40 final size:40
Alignment explanation
Indices: 69915469--69915804 Score: 480
Period size: 40 Copynumber: 8.4 Consensus size: 40
69915459 TGAATGATAC
* * *
69915469 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
69915509 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
69915549 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
69915589 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
69915629 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
69915669 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
69915709 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
69915749 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
69915789 -CGAGCTAA-ACCCGAAG
1 CCGGGCTAAGACCCGAAG
69915805 AAACTTGGTT
Statistics
Matches: 267, Mismatches: 28, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
38 8 0.03
39 6 0.02
40 251 0.94
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:69915602 original size:80 final size:80
Alignment explanation
Indices: 69915469--69915804 Score: 534
Period size: 80 Copynumber: 4.2 Consensus size: 80
69915459 TGAATGATAC
* * * * * *
69915469 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCATTT
69915533 GTGCGAGTTGTTATAT
65 GTGCGAGTTGTTATAT
69915549 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCATTTG
*
69915614 TGCGAGTTATTATAT
66 TGCGAGTTGTTATAT
69915629 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCATTTG
69915694 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
*
69915709 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCATTTG
** *
69915774 TGCTTGTGGTTATAT
66 TGCGAGTTGTTATAT
*
69915789 -CGAGCTAA-ACCCGAAG
1 CCGGGCTAAGACCCGAAG
69915805 AAACTTGGTT
Statistics
Matches: 242, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
78 8 0.03
79 7 0.03
80 225 0.93
81 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCATTTG
TGCGAGTTGTTATAT
Found at i:69923437 original size:40 final size:40
Alignment explanation
Indices: 69923382--69923702 Score: 477
Period size: 40 Copynumber: 8.1 Consensus size: 40
69923372 TGAATGATAC
* * *
69923382 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
69923422 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
69923462 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
69923501 CCGGG-TAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
69923540 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
69923580 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
69923620 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
69923660 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
69923700 CCG
1 CCG
69923703 CTAAATTCTG
Statistics
Matches: 256, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 31 0.12
39 10 0.04
40 213 0.83
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:69923706 original size:158 final size:157
Alignment explanation
Indices: 69923385--69923706 Score: 495
Period size: 158 Copynumber: 2.0 Consensus size: 157
69923375 ATGATACCCG
* * * *
69923385 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 GGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCATTTGTGC
69923450 GAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCGGGTAAGACCCG
66 GAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCGGGTAAGACCCG
* *
69923515 AAGGCATTTGTGCGAGTTATTATATCC
131 AAGGCAATTGTGCGAGTGATTATATCC
* *
69923542 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCATTTGT
1 -GGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGCATTTGT
69923606 GCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGA
64 GCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-CCGGG-TAAGA
** *
69923671 CCCGAAGGCAATTGTGCTTGTGGTTATATCC
127 CCCGAAGGCAATTGTGCGAGTGATTATATCC
69923702 -GCTAA
1 GGCTAA
69923707 ATTCTGAAGA
Statistics
Matches: 150, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
158 112 0.75
159 7 0.05
160 31 0.21
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (157 bp):
GGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCATTTGTGC
GAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCGGGTAAGACCCG
AAGGCAATTGTGCGAGTGATTATATCC
Found at i:69927632 original size:71 final size:71
Alignment explanation
Indices: 69927548--69927711 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
69927538 CGATTTGTCT
69927548 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
69927613 CTTTCA
66 CTTTCA
* *
69927619 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
69927684 CTTTCA
66 CTTTCA
69927690 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69927712 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:69927749 original size:71 final size:70
Alignment explanation
Indices: 69927548--69927745 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
69927538 CGATTTGTCT
* * * * *
69927548 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69927613 CTTTCA
65 CTTTCA
* * * *
69927619 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69927684 CTTTCA
65 CTTTCA
* *
69927690 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69927746 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69933667 original size:21 final size:22
Alignment explanation
Indices: 69933643--69933684 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
69933633 TAGAGAATAT
*
69933643 ATGTT-AATTTGTTTGAATTGA
1 ATGTTAAATTTGTGTGAATTGA
69933664 ATGTTAAATTTGTGTGAATTG
1 ATGTTAAATTTGTGTGAATTG
69933685 TATAAATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (22 bp):
ATGTTAAATTTGTGTGAATTGA
Found at i:69937999 original size:25 final size:24
Alignment explanation
Indices: 69937965--69938017 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
69937955 CACAAACGCA
69937965 GCTCTTTATGAG-TGTCTTGATATAG
1 GCTCTTTATGAGCTGTC-TGATAT-G
*
69937990 GCTCTTTATGAGCTTTCTGATATG
1 GCTCTTTATGAGCTGTCTGATATG
69938014 GCTC
1 GCTC
69938018 ACTTGAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 18 0.69
26 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (24 bp):
GCTCTTTATGAGCTGTCTGATATG
Found at i:69939355 original size:68 final size:68
Alignment explanation
Indices: 69939181--69939342 Score: 173
Period size: 68 Copynumber: 2.4 Consensus size: 68
69939171 GAGTGTTTCT
* * * * *
69939181 TACCATACAATGTCATGTTTACTGTCATGGCGGACTTAATATGTTGCCACAACCCAACTTTGGTC
1 TACCATACAATGTCATGTTTACTATCATGGCAGACTTCATATGTTACCACAACCCAACTATGGTC
69939246 TTA
66 TTA
* * * * * * * * *
69939249 CACCATACTATG-CAATGTTTTCTATCCTGGCAGACTTCATATGTTATCATAGCCTAGCTATGGT
1 TACCATACAATGTC-ATGTTTACTATCATGGCAGACTTCATATGTTACCACAACCCAACTATGGT
69939313 CTTA
65 CTTA
*
69939317 TACCATACGATGTCATGTTTACTATC
1 TACCATACAATGTCATGTTTACTATC
69939343 TTGGTTGACT
Statistics
Matches: 75, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
67 1 0.01
68 73 0.97
69 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (68 bp):
TACCATACAATGTCATGTTTACTATCATGGCAGACTTCATATGTTACCACAACCCAACTATGGTC
TTA
Found at i:69941071 original size:24 final size:24
Alignment explanation
Indices: 69940990--69941102 Score: 106
Period size: 24 Copynumber: 4.8 Consensus size: 24
69940980 AAGCTCTTCA
*
69940990 TGAGCTGACAAATAGTAAGCTCTAT
1 TGAGCTGA-AAACAGTAAGCTCTAT
* *
69941015 TGAGCTAAAAACAGCAAGCTCTAT
1 TGAGCTGAAAACAGTAAGCTCTAT
* *
69941039 TGAGTTGAAAACGGTAAGCTCT-T
1 TGAGCTGAAAACAGTAAGCTCTAT
** * *
69941062 TCGAGCTG-AATTAGTAAGCTCGAA
1 T-GAGCTGAAAACAGTAAGCTCTAT
69941086 TGAGCTG-AAACAGTAAG
1 TGAGCTGAAAACAGTAAG
69941103 TTGTTACGAG
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
23 26 0.37
24 38 0.54
25 7 0.10
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTAT
Found at i:69946381 original size:71 final size:71
Alignment explanation
Indices: 69946295--69946458 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
69946285 CGATTTGTCT
69946295 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
69946360 CTTTCA
66 CTTTCA
*
69946366 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
69946431 CTTTCA
66 CTTTCA
69946437 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69946459 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:69946496 original size:71 final size:70
Alignment explanation
Indices: 69946295--69946492 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
69946285 CGATTTGTCT
* * *
69946295 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
69946360 CTTTCA
65 CTTTCA
* * * *
69946366 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
69946431 CTTTCA
65 CTTTCA
* *
69946437 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
69946493 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:69953484 original size:71 final size:71
Alignment explanation
Indices: 69953398--69953561 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69953388 CGATTTGTCT
69953398 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69953463 CTTTCA
66 CTTTCA
69953469 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69953534 CTTTCA
66 CTTTCA
69953540 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69953562 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69953599 original size:71 final size:70
Alignment explanation
Indices: 69953398--69953595 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
69953388 CGATTTGTCT
* * * *
69953398 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69953463 CTTTCA
65 CTTTCA
* * * *
69953469 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69953534 CTTTCA
65 CTTTCA
* *
69953540 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69953596 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69955629 original size:40 final size:40
Alignment explanation
Indices: 69955568--69955752 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
69955558 GGGCTAAGTC
**
69955568 CCGAAGGC-TTTGTGTTAAGTTACTAAATCCAGACTAAGAT
1 CCGAAGGCATTTGTG-CGAGTTACTAAATCCAGACTAAGAT
* * * *
69955608 TCGAAGGCAATTGTCCGAGTTACTAAACCCAGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGAT
* *
69955648 CCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGAT
**
69955688 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGA-TAAG-T
1 CCGAAGGCATTTGTGCGAGTTACTAAATC-CAGACTAAGAT
*
69955727 CCAGAAGGCATTTGTGCGAGCTACTA
1 CC-GAAGGCATTTGTGCGAGTTACTA
69955753 TAACCGGGCT
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 117 0.92
41 7 0.06
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGAT
Found at i:69955774 original size:40 final size:40
Alignment explanation
Indices: 69955555--69955780 Score: 201
Period size: 40 Copynumber: 5.7 Consensus size: 40
69955545 TCGAATGATG
**
69955555 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACTAAA
* * * * *
69955595 TCCAGACTAAGAT-TCGAAGGCAATTGTCCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
69955635 CCCAGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69955675 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
69955715 TCTGGGATAAGTCCAGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
69955756 -CCGGGCTGTGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69955781 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 148 0.95
41 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69960200 original size:49 final size:49
Alignment explanation
Indices: 69960141--69960386 Score: 321
Period size: 49 Copynumber: 5.0 Consensus size: 49
69960131 GTAGACAAGG
* * * *
69960141 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
*
69960190 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
** * * * *
69960240 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * *
69960290 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
*
69960340 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
69960387 CCACAATAGA
Statistics
Matches: 170, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 84 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:69960663 original size:27 final size:27
Alignment explanation
Indices: 69960633--69960686 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
69960623 TCATACAACC
* *
69960633 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
69960660 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
69960687 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:69966454 original size:28 final size:28
Alignment explanation
Indices: 69966414--69966505 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
69966404 TGTACTAGAG
*
69966414 TACCCCTATGTATGAAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
69966442 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
*
69966470 TACCCCTATGTATGCAAAATGACC-TCTA
1 TACCCCTATGTATGCAAAATTACCAT-TA
69966498 TACCCCTA
1 TACCCCTA
69966506 GGTTAATTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:69966649 original size:27 final size:27
Alignment explanation
Indices: 69966609--69966697 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
69966599 AGGAAGCGTC
69966609 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
69966637 -TGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
69966663 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
69966692 CTGGTG
1 CTGGTG
69966698 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
26 8 0.15
27 29 0.55
28 9 0.17
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:69966708 original size:29 final size:28
Alignment explanation
Indices: 69966619--69966708 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
69966609 CTGGTGGCTA
* * *
69966619 TGCCACAAATTATCTGTT-TGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
69966646 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
69966673 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
69966702 TGTCACA
1 TGCCACA
69966709 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 9 0.17
27 20 0.38
28 9 0.17
29 15 0.28
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:69973797 original size:24 final size:24
Alignment explanation
Indices: 69973765--69973823 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
69973755 AATCTCAAAT
69973765 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
69973789 GCACTATGTGTGCTATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69973813 GCACTATGTGT
1 GCACTATGTGT
69973824 TCGAACATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:69981479 original size:24 final size:24
Alignment explanation
Indices: 69981447--69981509 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
69981437 AATCTCAAAT
69981447 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69981471 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69981495 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
69981510 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:69984962 original size:28 final size:28
Alignment explanation
Indices: 69984922--69984985 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
69984912 TGTACTAGAG
*
69984922 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
69984950 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
69984978 TACCCCTA
1 TACCCCTA
69984986 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:69985144 original size:27 final size:27
Alignment explanation
Indices: 69985101--69985177 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 27
69985091 TTGGTGGTTA
69985101 TGCCACAAATTATCTGTTCTGATGGC-C
1 TGCCACAAA-TATCTGTTCTGATGGCAC
* *
69985128 TTGCCACATATATCTGTTCTGGTGGCAC
1 -TGCCACAAATATCTGTTCTGATGGCAC
69985156 TGCCACAAAATATCTGTATCTG
1 TGCCAC-AAATATCTGT-TCTG
69985178 GTGACTCTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 21 0.49
28 18 0.42
29 4 0.09
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGATGGCAC
Found at i:69985191 original size:29 final size:28
Alignment explanation
Indices: 69985101--69985191 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 28
69985091 TTGGTGGTTA
* * *
69985101 TGCCACAAATTATCTGTTCTGATGGC-C
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
69985128 TTGCCAC-ATATATCTGTTCTGGTGGCAC
1 -TGCCACAAAATATCTGTTCTGGTGACAC
*
69985156 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
69985185 TGTCACA
1 TGCCACA
69985192 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 16 0.30
29 15 0.28
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:69985199 original size:55 final size:56
Alignment explanation
Indices: 69985101--69985205 Score: 126
Period size: 55 Copynumber: 1.9 Consensus size: 56
69985091 TTGGTGGTTA
* *
69985101 TGCCACAAATTATCTGTTCTGATGGCCTTGCCACATATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGATGACCTTGCCACATATATCTGTATCTGGTGGCAC
* * *
69985156 TGCCACAAAATATCTGTATCTGGTGA-CTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGATGACCT-TGCCACATATATCTGTATCTGG
69985206 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
55 24 0.57
56 18 0.43
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGATGACCTTGCCACATATATCTGTATCTGGTGGCAC
Found at i:69986821 original size:39 final size:39
Alignment explanation
Indices: 69986774--69986905 Score: 219
Period size: 39 Copynumber: 3.4 Consensus size: 39
69986764 TATATGAGAT
*
69986774 TGGAAATATATCTGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
69986813 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* **
69986852 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
69986891 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
69986906 GTTAAAGACC
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:69986919 original size:78 final size:78
Alignment explanation
Indices: 69986774--69986923 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 78
69986764 TATATGAGAT
* * * * **
69986774 TGGAAATATATCTGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCC
69986839 GCAGGCTATATGC
66 GCAGGCTATATGC
* * **
69986852 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACC
69986916 CGCAGGCT
65 CGCAGGCT
69986924 TACGCTAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
77 1 0.02
78 60 0.98
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (78 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCC
GCAGGCTATATGC
Found at i:69988974 original size:24 final size:24
Alignment explanation
Indices: 69988942--69989015 Score: 130
Period size: 24 Copynumber: 3.1 Consensus size: 24
69988932 ATGAGATGAC
*
69988942 AAATAGTAAGCTCTATTGAGCTAA
1 AAATGGTAAGCTCTATTGAGCTAA
*
69988966 AAATGGTAAGCTCTATTGAGCTGA
1 AAATGGTAAGCTCTATTGAGCTAA
69988990 AAATGGTAAGCTCTATTGAGCTAA
1 AAATGGTAAGCTCTATTGAGCTAA
69989014 AA
1 AA
69989016 CACGCTATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.28
Consensus pattern (24 bp):
AAATGGTAAGCTCTATTGAGCTAA
Found at i:69989005 original size:48 final size:49
Alignment explanation
Indices: 69988920--69989015 Score: 142
Period size: 48 Copynumber: 2.0 Consensus size: 49
69988910 AGACATGGCC
69988920 GGTAAGCTCTTCATGAGATGACAAATAGTAAGCTCTATTGAGCTAAAAAT
1 GGTAAGCTCTT-ATGAGATGACAAATAGTAAGCTCTATTGAGCTAAAAAT
* *
69988970 GGTAAGCTC-TATTGAGCTGA-AAATGGTAAGCTCTATTGAGCTAAAA
1 GGTAAGCTCTTA-TGAGATGACAAATAGTAAGCTCTATTGAGCTAAAA
69989016 CACGCTATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
48 26 0.60
49 8 0.19
50 9 0.21
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (49 bp):
GGTAAGCTCTTATGAGATGACAAATAGTAAGCTCTATTGAGCTAAAAAT
Found at i:69989391 original size:43 final size:42
Alignment explanation
Indices: 69989321--69989432 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
69989311 TACCGTACCA
* * * *
69989321 ATGCTATATCCCAGATATAGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATAGCCCAGATATGGTCTTACATG-AAGTCTCATATCG
* *
69989363 ATGCCAATAGCCCAGCTATGGTCTTACATGAAGTCTCATATTG
1 ATGCC-ATAGCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
69989406 ATGCCATATCCTAGATATGGTCTTACA
1 ATGCCATAGCCCAGATATGGTCTTACA
69989433 CATTATCTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 25 0.42
43 34 0.58
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:69993622 original size:40 final size:40
Alignment explanation
Indices: 69993577--69993706 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
69993567 CGGAATACAA
69993577 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
69993617 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
69993657 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
69993697 CCGGATATAA
1 CCGGATATAA
69993707 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:69993721 original size:40 final size:40
Alignment explanation
Indices: 69993577--69993739 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
69993567 CGGAATACAA
* **
69993577 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
69993617 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
69993657 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
69993697 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
69993736 CCGG
1 CCGG
69993740 TATCATTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:70007648 original size:14 final size:15
Alignment explanation
Indices: 70007624--70007654 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
70007614 CATTATAAAG
70007624 GAAAAAGAAAAAAAA
1 GAAAAAGAAAAAAAA
70007639 GAAAAA-AAAAAAAA
1 GAAAAAGAAAAAAAA
70007653 GA
1 GA
70007655 TAAATACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
GAAAAAGAAAAAAAA
Found at i:70017112 original size:1 final size:1
Alignment explanation
Indices: 70017098--70017134 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
70017088 GACTTTTCTC
* *
70017098 TTTTTCTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
70017135 GCTTAATCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.03, G:0.03, T:0.95
Consensus pattern (1 bp):
T
Found at i:70025842 original size:34 final size:34
Alignment explanation
Indices: 70025804--70025875 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
70025794 AGTACTTAAT
70025804 GCTTTCTTATATTAATTGAATGACAAAATCCTTA
1 GCTTTCTTATATTAATTGAATGACAAAATCCTTA
70025838 GCTTTCTTATATTAATTGAATGACAAAATCCTTA
1 GCTTTCTTATATTAATTGAATGACAAAATCCTTA
70025872 -CTTT
1 GCTTT
70025876 TCGCTTTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 4 0.11
34 34 0.89
ACGTcount: A:0.33, C:0.15, G:0.08, T:0.43
Consensus pattern (34 bp):
GCTTTCTTATATTAATTGAATGACAAAATCCTTA
Found at i:70031986 original size:22 final size:22
Alignment explanation
Indices: 70031961--70032013 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
70031951 CACTATGAAC
*
70031961 TATGTGAATATGAGCTCATG-GA
1 TATGTGAATATGAGAT-ATGTGA
* *
70031983 TATGTGTATATGTGATATGTGA
1 TATGTGAATATGAGATATGTGA
70032005 TATGTGAAT
1 TATGTGAAT
70032014 CCGAGTGCTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.40
Consensus pattern (22 bp):
TATGTGAATATGAGATATGTGA
Found at i:70032002 original size:7 final size:7
Alignment explanation
Indices: 70031981--70032011 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
70031971 TGAGCTCATG
70031981 GATATGT
1 GATATGT
70031988 GTATATGT
1 G-ATATGT
70031996 GATATGT
1 GATATGT
70032003 GATATGT
1 GATATGT
70032010 GA
1 GA
70032012 ATCCGAGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (7 bp):
GATATGT
Found at i:70041425 original size:40 final size:40
Alignment explanation
Indices: 70041374--70041561 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
70041364 GCGACTCGTT
* * * *
70041374 CAAAAGCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
70041414 CAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
70041454 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
70041494 CAAATGCCTTCAGGAATT-GACCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCA
*
70041535 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACTTAGCCCGGAT
70041562 ACTATTCGAA
Statistics
Matches: 124, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.03
40 88 0.71
41 31 0.25
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70044802 original size:40 final size:39
Alignment explanation
Indices: 70044637--70044820 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
70044627 AAATTGAATG
* * *
70044637 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
70044677 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
70044717 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
70044757 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
70044796 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70044821 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:70044845 original size:80 final size:81
Alignment explanation
Indices: 70044677--70044865 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
70044667 GCTGGAAATT
* * * *
70044677 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
70044742 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
70044758 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
70044821 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
70044837 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
70044866 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70053761 original size:29 final size:29
Alignment explanation
Indices: 70053728--70053793 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
70053718 CGGTGACGAG
70053728 ATGGCACTAAGTGTGCATGCTGGAAATAT
1 ATGGCACTAAGTGTGCATGCTGGAAATAT
70053757 ATGGCACTAAGTGTGCATGCTGGAAATAT
1 ATGGCACTAAGTGTGCATGCTGGAAATAT
*
70053786 ACGGCACT
1 ATGGCACT
70053794 GGGTGTGCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCATGCTGGAAATAT
Found at i:70058064 original size:40 final size:40
Alignment explanation
Indices: 70058009--70058290 Score: 410
Period size: 40 Copynumber: 7.0 Consensus size: 40
70057999 GATGATAACG
*
70058009 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
* *
70058049 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
*
70058089 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
70058129 GGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATATCC
*
70058169 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
* **
70058209 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
* *
70058249 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATATCC
70058289 GG
1 GG
70058291 TTAAATCCCG
Statistics
Matches: 228, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
39 2 0.01
40 225 0.99
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
Found at i:70065052 original size:25 final size:26
Alignment explanation
Indices: 70065020--70065093 Score: 96
Period size: 25 Copynumber: 2.8 Consensus size: 26
70065010 CTACAATGAT
70065020 AACCTTTGTGGCGTAATATGAAGAAA
1 AACCTTTGTGGCGTAATATGAAGAAA
* *
70065046 GA-CTTTGTGGAGTAATATGAAAGAAA
1 AACCTTTGTGGCGTAATATG-AAGAAA
**
70065072 AACCTTTGTGGCAAAATATGAA
1 AACCTTTGTGGCGTAATATGAA
70065094 ATGAACACTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 16 0.40
26 10 0.25
27 14 0.35
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (26 bp):
AACCTTTGTGGCGTAATATGAAGAAA
Found at i:70065089 original size:27 final size:27
Alignment explanation
Indices: 70065020--70065094 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
70065010 CTACAATGAT
*
70065020 AACCTTTGTGGCGTAATATG-AAGAAA
1 AACCTTTGTGGCATAATATGAAAGAAA
*
70065046 GA-CTTTGTGG-AGTAATATGAAAGAAA
1 AACCTTTGTGGCA-TAATATGAAAGAAA
*
70065072 AACCTTTGTGGCAAAATATGAAA
1 AACCTTTGTGGCATAATATGAAA
70065095 TGAACACTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
25 15 0.37
26 8 0.20
27 17 0.41
28 1 0.02
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AACCTTTGTGGCATAATATGAAAGAAA
Found at i:70067444 original size:27 final size:27
Alignment explanation
Indices: 70067406--70067458 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
70067396 TCGATAAAGT
70067406 TTTAAGGTGTACTGTGTGATTTAATAA
1 TTTAAGGTGTACTGTGTGATTTAATAA
70067433 TTTAAGGTGTACTGTGTGATTTAATA
1 TTTAAGGTGTACTGTGTGATTTAATA
70067459 GACATCCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.45
Consensus pattern (27 bp):
TTTAAGGTGTACTGTGTGATTTAATAA
Found at i:70069081 original size:46 final size:46
Alignment explanation
Indices: 70069014--70069281 Score: 300
Period size: 46 Copynumber: 5.8 Consensus size: 46
70069004 TGTAACCCGC
*
70069014 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
70069060 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
70069110 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
70069153 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
70069203 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
70069246 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
70069282 ATGCCCAAAT
Statistics
Matches: 187, Mismatches: 17, Indels: 36
0.78 0.07 0.15
Matches are distributed among these distances:
42 5 0.03
43 6 0.03
44 4 0.02
45 5 0.03
46 90 0.48
47 55 0.29
48 6 0.03
49 4 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:70069134 original size:93 final size:93
Alignment explanation
Indices: 70069022--70069286 Score: 503
Period size: 93 Copynumber: 2.8 Consensus size: 93
70069012 GCCCATAAGT
70069022 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70069087 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
70069115 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70069180 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
70069208 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70069273 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
70069287 CAAATATCCC
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 169 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70072235 original size:21 final size:21
Alignment explanation
Indices: 70072209--70072269 Score: 115
Period size: 21 Copynumber: 3.0 Consensus size: 21
70072199 GTCATAGTGG
70072209 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
70072230 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
70072251 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
70072270 GTTTCAAGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
20 6 0.15
21 34 0.85
ACGTcount: A:0.10, C:0.39, G:0.30, T:0.21
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:70074115 original size:44 final size:43
Alignment explanation
Indices: 70074035--70074120 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 43
70074025 AATGTTGACA
* *
70074035 TTGATTTGAGATATCGTGTAAGACCGTGTCTAGGACACAGGCC
1 TTGATTTGAGATATCGTGTAAGACCATGTATAGGACACAGGCC
* * *
70074078 TTGATTTGAGATTTACGTGTAAGACCATGTATGGGACATAGGC
1 TTGATTTGAGATAT-CGTGTAAGACCATGTATAGGACACAGGC
70074121 ATCGTATCTG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 13 0.35
44 24 0.65
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
TTGATTTGAGATATCGTGTAAGACCATGTATAGGACACAGGCC
Found at i:70074155 original size:42 final size:43
Alignment explanation
Indices: 70074090--70074189 Score: 130
Period size: 42 Copynumber: 2.3 Consensus size: 43
70074080 GATTTGAGAT
* * * *
70074090 TTACGTGTAAGACCATGTATGGGACATAGGCATCGTATCTG-A
1 TTACATGTAAGACCATGTATGGGACAGAGGCATCGAAACTGAA
* * *
70074132 TTTCATGTAAGACCCTGTCTGGGACAGAGGCATCGAAACTGAA
1 TTACATGTAAGACCATGTATGGGACAGAGGCATCGAAACTGAA
70074175 TTACATGTAAGACCA
1 TTACATGTAAGACCA
70074190 CGTCCGGGAC
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
42 34 0.71
43 14 0.29
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (43 bp):
TTACATGTAAGACCATGTATGGGACAGAGGCATCGAAACTGAA
Found at i:70074207 original size:43 final size:42
Alignment explanation
Indices: 70074090--70074207 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 42
70074080 GATTTGAGAT
* * * * * *
70074090 TTACGTGTAAGACCATGTATGGGACATAGGCATCGTATCTGA
1 TTACATGTAAGACCACGTCTGGGACGTAGGCATCGAAACTGA
*
70074132 TTTCATGTAAGACC-CTGTCTGGGACAG-AGGCATCGAAACTGAA
1 TTACATGTAAGACCAC-GTCTGGGAC-GTAGGCATCGAAACTG-A
* *
70074175 TTACATGTAAGACCACGTCCGGGACGTTGGCAT
1 TTACATGTAAGACCACGTCTGGGACGTAGGCAT
70074208 TGTACTCGTT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
42 33 0.54
43 27 0.44
44 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACGTAGGCATCGAAACTGA
Found at i:70092947 original size:42 final size:41
Alignment explanation
Indices: 70092832--70092970 Score: 118
Period size: 42 Copynumber: 3.2 Consensus size: 41
70092822 TGAGATATCA
* *
70092832 TGTAAGACCGTGTCTAGGACACAGGCATCGATTTGAGATTTACG
1 TGTAAGACCATGTCTGGGACACAGGCATCGA-TTGA-ATTT-CG
* * * *
70092876 TGTAAGACCATGTCTGAGTCATAGACATCGTATCT-AATTTCG
1 TGTAAGACCATGTCTGGGACACAGGCATCG-AT-TGAATTTCG
* * * *
70092918 TGTAAGACCCTGTCTGGGAAAGAGGCATCGAAATTGAATTTCA
1 TGTAAGACCATGTCTGGGACACAGGCATCG--ATTGAATTTCG
70092961 TGTAAGACCA
1 TGTAAGACCA
70092971 CATCCGGGAC
Statistics
Matches: 76, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
42 27 0.36
43 21 0.28
44 26 0.34
45 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATTGAATTTCG
Found at i:70094541 original size:21 final size:21
Alignment explanation
Indices: 70094517--70094578 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
70094507 AAAATGTTTC
70094517 AGTTTTTGAAAATTATGTATG
1 AGTTTTTGAAAATTATGTATG
* * * *
70094538 AG--TTAGAAAA-AATGTTTA
1 AGTTTTTGAAAATTATGTATG
70094556 AGTTTTTGAAAATTATGTATG
1 AGTTTTTGAAAATTATGTATG
70094577 AG
1 AG
70094579 CTCGGTTTAG
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
18 7 0.23
19 7 0.23
20 7 0.23
21 9 0.30
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (21 bp):
AGTTTTTGAAAATTATGTATG
Found at i:70094560 original size:39 final size:39
Alignment explanation
Indices: 70094501--70094578 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
70094491 CCTTTAACAC
*
70094501 TTAGAAAAAATGTTTCAGTTTTTGAAAATTATGTATGAG
1 TTAGAAAAAATGTTTAAGTTTTTGAAAATTATGTATGAG
70094540 TTAGAAAAAATGTTTAAGTTTTTGAAAATTATGTATGAG
1 TTAGAAAAAATGTTTAAGTTTTTGAAAATTATGTATGAG
70094579 CTCGGTTTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.40, C:0.01, G:0.18, T:0.41
Consensus pattern (39 bp):
TTAGAAAAAATGTTTAAGTTTTTGAAAATTATGTATGAG
Found at i:70095203 original size:19 final size:19
Alignment explanation
Indices: 70095179--70095217 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70095169 ATTAATTTTG
70095179 ATCAAATAAAATT-AAATTA
1 ATCAAAT-AAATTAAAATTA
*
70095198 ATCAAATTAATTAAAATTA
1 ATCAAATAAATTAAAATTA
70095217 A
1 A
70095218 AATGATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:70098698 original size:27 final size:27
Alignment explanation
Indices: 70098661--70098724 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
70098651 GTACATATAT
70098661 GTCA-TTTACCCTCGAGGGGTAAATTA
1 GTCATTTTACCCTCGAGGGGTAAATTA
** ** *
70098687 GTCATTTTACCCTTTAGGGGTATTTTG
1 GTCATTTTACCCTCGAGGGGTAAATTA
70098714 GTCATTTTACC
1 GTCATTTTACC
70098725 AGTCTTGGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTCGAGGGGTAAATTA
Found at i:70102318 original size:27 final size:28
Alignment explanation
Indices: 70102262--70102330 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
70102252 AAATTTGTAC
*
70102262 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCAAGTTTGATCATAT
*
70102290 AGCACTAAGTGTGCAAG-TTGATTATAT
1 AGCACTAAGTGTGCAAGTTTGATCATAT
*
70102317 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
70102331 GGACTCACTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCAAGTTTGATCATAT
Found at i:70108649 original size:40 final size:39
Alignment explanation
Indices: 70108566--70108750 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
70108556 TCGAATGATG
* *
70108566 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTTACTAAA
* * * *
70108606 TCCGGACTAGGATCCGAAGGCATTTGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
*
70108646 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
70108685 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTA-AA
**
70108726 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
70108751 AGCGAGTCGT
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:70108706 original size:79 final size:82
Alignment explanation
Indices: 70108566--70108750 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
70108556 TCGAATGATG
* * *
70108566 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
* *
70108630 TGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
70108646 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
70108708 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
70108726 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70108751 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:70120556 original size:4 final size:4
Alignment explanation
Indices: 70120549--70120579 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
70120539 TCAAAACAAT
*
70120549 AAAG AAAG AAGG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
70120580 AAGGAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:70120566 original size:12 final size:12
Alignment explanation
Indices: 70120549--70120586 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
70120539 TCAAAACAAT
70120549 AAAGAAAGAAGG
1 AAAGAAAGAAGG
*
70120561 AAAGAAAGAAAG
1 AAAGAAAGAAGG
70120573 AAAGAAA-AAGG
1 AAAGAAAGAAGG
70120584 AAA
1 AAA
70120587 AAGAAAACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AAAGAAAGAAGG
Found at i:70123635 original size:17 final size:16
Alignment explanation
Indices: 70123609--70123642 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70123599 TAATTCATAA
*
70123609 TATAATTAATTTTAATT
1 TATAACTAA-TTTAATT
70123626 TATAACTAATTTAATT
1 TATAACTAATTTAATT
70123642 T
1 T
70123643 GGGTTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (16 bp):
TATAACTAATTTAATT
Found at i:70136039 original size:27 final size:27
Alignment explanation
Indices: 70136009--70136089 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
70135999 CGATATTGCA
**
70136009 GCAAAGCTGCCAGAAACAGTAAATGTG
1 GCAAAGCCACCAGAAACAGTAAATGTG
* * *
70136036 GCAAAGCCACCAGTATCAGTAATTGTG
1 GCAAAGCCACCAGAAACAGTAAATGTG
* * *
70136063 GCATAA-CCACCAGTAATAGTGAATGTG
1 GCA-AAGCCACCAGAAACAGTAAATGTG
70136090 ACATAGTCAC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 42 0.95
28 2 0.05
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GCAAAGCCACCAGAAACAGTAAATGTG
Found at i:70136094 original size:27 final size:26
Alignment explanation
Indices: 70136042--70136109 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
70136032 TGTGGCAAAG
*
70136042 CCACCAGTATCAGTAATTGTGGCATAA
1 CCACCAGTAT-AGTAATTGTGACATAA
*
70136069 CCACCAGTAATAGTGAA-TGTGACATAG
1 CCACCAGT-ATAGT-AATTGTGACATAA
*
70136096 TCACCAGTATAGTA
1 CCACCAGTATAGTA
70136110 CTTCCTCCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 26 0.72
28 4 0.11
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (26 bp):
CCACCAGTATAGTAATTGTGACATAA
Found at i:70136263 original size:26 final size:26
Alignment explanation
Indices: 70136230--70136289 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
70136220 TCATACAGAT
70136230 CATA-AGGGCATAATC-GTCATTTTAC
1 CATACAGGGCATAA-CGGTCATTTTAC
* *
70136255 CATACAGGGTATTACGGTCATTTTAC
1 CATACAGGGCATAACGGTCATTTTAC
*
70136281 CCTACAGGG
1 CATACAGGG
70136290 GTTTTACAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
CATACAGGGCATAACGGTCATTTTAC
Found at i:70136304 original size:27 final size:26
Alignment explanation
Indices: 70136248--70136304 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 26
70136238 CATAATCGTC
** *
70136248 ATTTTACCATACAGGGTATTACGGTC
1 ATTTTACCATACAGGGTATTACAATA
* *
70136274 ATTTTACCCTACAGGGGTTTTACAATA
1 ATTTTACCATACA-GGGTATTACAATA
70136301 ATTT
1 ATTT
70136305 CACAAATCGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (26 bp):
ATTTTACCATACAGGGTATTACAATA
Found at i:70143578 original size:40 final size:40
Alignment explanation
Indices: 70143534--70143681 Score: 212
Period size: 40 Copynumber: 3.7 Consensus size: 40
70143524 GAAATTATAA
* * *
70143534 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CATTCTAT
70143574 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
70143614 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
*
70143654 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCATTCGTGC
70143682 AAATCGTGAT
Statistics
Matches: 101, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 95 0.94
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
Found at i:70143695 original size:40 final size:39
Alignment explanation
Indices: 70143490--70143713 Score: 175
Period size: 40 Copynumber: 5.6 Consensus size: 39
70143480 AAATTGAATG
* * * *
70143490 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTCAT
* * * *
70143530 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CAT
* * *
70143570 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA-T
* * *
70143610 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA-T
* * *
70143650 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAT
* * *
70143689 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70143714 CTTGGTGCGG
Statistics
Matches: 154, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
37 4 0.03
38 3 0.02
39 3 0.02
40 144 0.94
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAT
Found at i:70143695 original size:80 final size:77
Alignment explanation
Indices: 70143491--70143722 Score: 209
Period size: 80 Copynumber: 2.9 Consensus size: 77
70143481 AATTGAATGA
* * * *
70143491 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT-TATAACCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCTATATCCGGGTTAAGACCCGAAGGC-
*
70143555 ATTGTGCTAGTGGCTAC
62 ATTGTGCGAGT-GCTAC
* * * * *
70143572 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC--TATATCCGGGTTAAGACCCGAAGGCAT
*
70143636 TCGTGCGAGT-CATTC
64 T-GTGCGAGTGC-TAC
* * *
70143651 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCCT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-T-ATATCCGGGTTAAGACCCGAAGGCAT
70143716 TGGTGCG
64 T-GTGCG
70143723 GGTTACCATA
Statistics
Matches: 123, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
77 4 0.03
78 2 0.02
79 9 0.07
80 108 0.88
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (77 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCTATATCCGGGTTAAGACCCGAAGGCATTG
TGCGAGTGCTAC
Found at i:70143738 original size:80 final size:80
Alignment explanation
Indices: 70143574--70143753 Score: 191
Period size: 80 Copynumber: 2.2 Consensus size: 80
70143564 GTGGCTACAT
* * **
70143574 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
70143639 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAA
* * * * * * *
70143654 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
70143719 TGCGGGTTA-CCATAA
66 TGCGAGTCATCC-TAA
* *
70143734 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAGACCCGAAGGC
70143754 GATTGATCGA
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
79 1 0.01
80 81 0.99
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAA
Found at i:70149362 original size:50 final size:50
Alignment explanation
Indices: 70149287--70149416 Score: 183
Period size: 50 Copynumber: 2.6 Consensus size: 50
70149277 CTAATAGAGT
70149287 CATGCATTATGTAACT-TCCATGTTAGTCAAG-TATGCATCATAAATAATGA
1 CATGCATTATGTAACTCT-CATGTTAGTCAAGAT-TGCATCATAAATAATGA
* * *
70149337 CATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATCATAAATTATGT
1 CATGCATTATGTAACTCTCATGTTAGTCAAGATTGCATCATAAATAATGA
* *
70149387 CGTGCATTATGTAACTCCCATGTTAGTCAA
1 CATGCATTATGTAACTCTCATGTTAGTCAA
70149417 AGTTTGCAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
50 70 0.97
51 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (50 bp):
CATGCATTATGTAACTCTCATGTTAGTCAAGATTGCATCATAAATAATGA
Found at i:70150693 original size:16 final size:16
Alignment explanation
Indices: 70150672--70150705 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70150662 CAAAAAATAG
70150672 TTATTTGTGTAAACCA
1 TTATTTGTGTAAACCA
* *
70150688 TTATTTTTGTAAATCA
1 TTATTTGTGTAAACCA
70150704 TT
1 TT
70150706 TTGTTAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (16 bp):
TTATTTGTGTAAACCA
Found at i:70152395 original size:68 final size:70
Alignment explanation
Indices: 70152323--70152520 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
70152313 ACACCCTGTA
* * * *
70152323 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
70152385 ATAAAT
65 ATAAAT
*
70152391 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
70152456 ATAAAT
65 ATAAAT
*
70152462 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
70152521 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:70152434 original size:41 final size:41
Alignment explanation
Indices: 70152389--70152506 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
70152379 TGAAAGATAA
70152389 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
70152430 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70152460 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70152501 ATGTAG
1 ATGTAG
70152507 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:70152446 original size:71 final size:71
Alignment explanation
Indices: 70152357--70152520 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70152347 GAGATGTATC
70152357 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70152422 AGGACA
66 AGGACA
70152428 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70152493 AGGACA
66 AGGACA
70152499 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
70152521 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:70159957 original size:68 final size:70
Alignment explanation
Indices: 70159885--70160082 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
70159875 ACACCCTGTA
* * * *
70159885 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
70159947 ATAAAT
65 ATAAAT
*
70159953 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
70160018 ATAAAT
65 ATAAAT
*
70160024 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
70160083 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:70159996 original size:41 final size:41
Alignment explanation
Indices: 70159951--70160068 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
70159941 TGAAAGATAA
70159951 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
70159992 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70160022 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70160063 ATGTAG
1 ATGTAG
70160069 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:70160008 original size:71 final size:71
Alignment explanation
Indices: 70159919--70160082 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70159909 GAGATGTATC
70159919 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70159984 AGGACA
66 AGGACA
70159990 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70160055 AGGACA
66 AGGACA
70160061 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
70160083 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:70163882 original size:80 final size:80
Alignment explanation
Indices: 70163798--70163946 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
70163788 TATGGTAACC
* * * *
70163798 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
70163862 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
70163878 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
70163943 CCGG
66 CCGG
70163947 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:70163888 original size:40 final size:38
Alignment explanation
Indices: 70163839--70163946 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
70163829 ATCACGATTT
*
70163839 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
70163879 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
70163919 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
70163947 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:70171961 original size:80 final size:80
Alignment explanation
Indices: 70171877--70172025 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
70171867 TATGGTAACC
* * * *
70171877 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
70171941 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
70171957 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
70172022 CCGG
66 CCGG
70172026 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:70171967 original size:40 final size:38
Alignment explanation
Indices: 70171918--70172025 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
70171908 ATCACGATTT
*
70171918 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
70171958 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
70171998 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
70172026 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:70176274 original size:29 final size:28
Alignment explanation
Indices: 70176222--70176336 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
70176212 GTGAGCATGA
* *
70176222 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
70176250 ATATAAATGTGATTTGGGCCTAATGGGAC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
70176279 ATATACATGTGATTTCGGCCTAATGGACC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
70176308 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
70176336 A
1 A
70176337 GATATAGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 25 0.34
29 48 0.66
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:70185379 original size:37 final size:37
Alignment explanation
Indices: 70185329--70185414 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
70185319 TTATTACGAA
* *
70185329 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGCCATCGG
*
70185366 GTCTTACTCGGACATAATCTCCACACGTAGCCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGCCATCGG
70185403 GTCTTACCCGGA
1 GTCTTACCCGGA
70185415 ATACATTTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGCCATCGG
Found at i:70185530 original size:48 final size:48
Alignment explanation
Indices: 70185459--70185651 Score: 341
Period size: 48 Copynumber: 4.0 Consensus size: 48
70185449 TGTTACAACA
* *
70185459 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
* *
70185507 TTCACATTAGCCATTCTGCTTTACCACATATACATATCGCACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
70185555 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
70185603 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
70185651 T
1 T
70185652 CGGCTTTACC
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 137 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:70185653 original size:34 final size:34
Alignment explanation
Indices: 70185615--70185685 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
70185605 CACATTAGCC
70185615 ATTCGGCTTTACCACATATACATATCACACATGT
1 ATTCGGCTTTACCACATATACATATCACACATGT
70185649 ATTCGGCTTTACCACATATACATATCACACATGT
1 ATTCGGCTTTACCACATATACATATCACACATGT
70185683 ATT
1 ATT
70185686 TCACATTAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.34
Consensus pattern (34 bp):
ATTCGGCTTTACCACATATACATATCACACATGT
Found at i:70185661 original size:82 final size:82
Alignment explanation
Indices: 70185567--70185733 Score: 325
Period size: 82 Copynumber: 2.0 Consensus size: 82
70185557 CACATTAGCC
70185567 ATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
70185632 ATACATATCACACATGT
66 ATACATATCACACATGT
*
70185649 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
70185714 ATACATATCACACATGT
66 ATACATATCACACATGT
70185731 ATT
1 ATT
70185734 TCACATTAGC
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 84 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.33
Consensus pattern (82 bp):
ATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
ATACATATCACACATGT
Found at i:70185680 original size:130 final size:130
Alignment explanation
Indices: 70185519--70185762 Score: 461
Period size: 130 Copynumber: 1.9 Consensus size: 130
70185509 CACATTAGCC
* *
70185519 ATTCTGCTTTACCACATATACATATCGCACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
70185584 ATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGT
66 ATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGT
70185649 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
*
70185714 ATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATA
66 ATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACATA
70185763 ATTACACTTT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 111 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (130 bp):
ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACAT
ATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGT
Found at i:70185701 original size:48 final size:48
Alignment explanation
Indices: 70185649--70185762 Score: 228
Period size: 48 Copynumber: 2.4 Consensus size: 48
70185639 TCACACATGT
70185649 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCC
1 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCC
70185697 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCC
1 ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCC
70185745 ATTCGGCTTTACCACATA
1 ATTCGGCTTTACCACATA
70185763 ATTACACTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (48 bp):
ATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCC
Found at i:70197299 original size:46 final size:46
Alignment explanation
Indices: 70197247--70197421 Score: 260
Period size: 46 Copynumber: 3.8 Consensus size: 46
70197237 TATTTGGGCA
*
70197247 TCCGAGCTCGTTGAGTCGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70197293 TCCGAGCTCGTTGAGTCGAGTTCGAGTTCTCTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70197339 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
* * * **
70197385 CCCAAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGG
70197422 GCGGGTTTCA
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 120 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70198853 original size:71 final size:71
Alignment explanation
Indices: 70198767--70198930 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
70198757 CGATTTGTCT
70198767 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
70198832 CTTTCA
66 CTTTCA
*
70198838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
70198903 CTTTCA
66 CTTTCA
70198909 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70198931 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:70198968 original size:71 final size:70
Alignment explanation
Indices: 70198767--70198964 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
70198757 CGATTTGTCT
* * * *
70198767 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCAACCTAGCTACATTTAC
70198832 CTTTCA
65 CTTTCA
* * * * *
70198838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCAACCTAGCTACATTTAC
70198903 CTTTCA
65 CTTTCA
* *
70198909 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTAACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCAACCTAGCTAC
70198965 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCAACCTAGCTACATTTACC
TTTCA
Found at i:70202552 original size:13 final size:13
Alignment explanation
Indices: 70202528--70202565 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
70202518 ATTTAAATCA
70202528 TCTT-TTTA-TTT
1 TCTTATTTATTTT
70202539 TCTTATTTATTTT
1 TCTTATTTATTTT
70202552 TCTTATTTATTTT
1 TCTTATTTATTTT
70202565 T
1 T
70202566 ATCTCAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 4 0.16
12 4 0.16
13 17 0.68
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (13 bp):
TCTTATTTATTTT
Found at i:70202937 original size:6 final size:6
Alignment explanation
Indices: 70202926--70202956 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
70202916 AACTTTTAAT
70202926 TATTTA TATTTA TATTTA TATTTA TATTTA T
1 TATTTA TATTTA TATTTA TATTTA TATTTA T
70202957 TCAGGTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:70204566 original size:100 final size:100
Alignment explanation
Indices: 70204393--70204588 Score: 293
Period size: 100 Copynumber: 2.0 Consensus size: 100
70204383 GTTGAACCAA
* ** *
70204393 TGTCTGATCTGGTACTAGAAAGACTGATCACAACGAATGTACCATTCTTGACACGACTAGAGGGT
1 TGTCTGATCTGGTAATAGAAAGACTGATCACAACGAATGTACCATTCCCGACACGACTAGAGGAT
* *
70204458 AAATAAAAGAGGGACAAGGTAGAGTTTATAATCGG
66 AAACAAAAGAGGGACAAGGTAAAGTTTATAATCGG
* * * * *
70204493 TGTCTGATTTGGTAATAGCAAGACTGATCACAACGAATGTATCGTTCCCGACATGACTAGAGGAT
1 TGTCTGATCTGGTAATAGAAAGACTGATCACAACGAATGTACCATTCCCGACACGACTAGAGGAT
70204558 AAACAAAAGAGGGACAAGGTAAAGTTTATAA
66 AAACAAAAGAGGGACAAGGTAAAGTTTATAA
70204589 ATTTTCTTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (100 bp):
TGTCTGATCTGGTAATAGAAAGACTGATCACAACGAATGTACCATTCCCGACACGACTAGAGGAT
AAACAAAAGAGGGACAAGGTAAAGTTTATAATCGG
Done.