Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 235 of 770
Found at i:70539094 original size:94 final size:94
Alignment explanation
Indices: 70538931--70539183 Score: 479
Period size: 94 Copynumber: 2.7 Consensus size: 94
70538921 AATGTGACCG
* * *
70538931 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70538996 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
70539025 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70539090 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
70539119 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70539184 AGCTTAATTA
Statistics
Matches: 156, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 156 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:70542428 original size:40 final size:39
Alignment explanation
Indices: 70542371--70542555 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
70542361 ATTAAATGAT
* * *
70542371 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
70542411 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
70542451 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
70542491 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
70542531 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
70542556 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:70542507 original size:80 final size:80
Alignment explanation
Indices: 70542370--70542576 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
70542360 AATTAAATGA
* * ** * *
70542370 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
70542435 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
70542448 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
70542513 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
70542530 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
70542577 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:70542561 original size:40 final size:39
Alignment explanation
Indices: 70542369--70542576 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
70542359 CAATTAAATG
* * ** *
70542369 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
70542409 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
70542449 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
70542489 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
70542529 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
70542569 ATATCCGG
1 ATATCCGG
70542577 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:70547247 original size:27 final size:27
Alignment explanation
Indices: 70547149--70547238 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
70547139 CTTAGTTTAC
* * *
70547149 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-CTTG
* *
70547176 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
70547203 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
70547230 TAAAATTAC
1 TAAAATTAC
70547239 CAAAGTACCC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGACTTG
Found at i:70547248 original size:54 final size:54
Alignment explanation
Indices: 70547149--70547255 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
70547139 CTTAGTTTAC
* * *
70547149 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
70547203 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
70547256 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:70547263 original size:27 final size:27
Alignment explanation
Indices: 70547244--70547426 Score: 222
Period size: 27 Copynumber: 6.8 Consensus size: 27
70547234 ATTACCAAAG
70547244 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
70547271 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
70547298 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
70547325 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * **
70547352 TACCCTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
** **
70547379 TACCCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
70547406 TACCCTCGATTTACAAAATTA
1 TACCCCCGATTTACAGAATTA
70547427 TAAAATACCC
Statistics
Matches: 140, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:70547291 original size:54 final size:54
Alignment explanation
Indices: 70547244--70547426 Score: 251
Period size: 54 Copynumber: 3.4 Consensus size: 54
70547234 ATTACCAAAG
* * *
70547244 TACCCCCGATTTACAGAATTACCGTTTTACCCCTGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTACCGTTT
*
70547298 TACCCTCGACTTACAGAATTACCGTTTTA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCT-GATTTACAGAATTACCGTTT
* ** * **
70547352 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTACCGTTT
*
70547406 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
70547427 TAAAATACCC
Statistics
Matches: 114, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 4 0.04
54 107 0.94
55 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTACCGTTT
Found at i:70547291 original size:81 final size:82
Alignment explanation
Indices: 70547190--70547374 Score: 187
Period size: 81 Copynumber: 2.3 Consensus size: 82
70547180 AATACTGAAA
** * * **
70547190 TACCCTCGATTTGTAAAATTACT-GAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGAT
1 TACCCTCGATTTACAGAATTACTCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGAT
70547254 TTACAGAATTACCGTTT
66 TTACAGAATTACCGTTT
* *** * **** *
70547271 TACCC-CTGATTTACATAATTA-TCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGA
1 TACCCTC-GATTTACAGAATTACTCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGA
70547334 TTTACAGAATTACCGTTT
65 TTTACAGAATTACCGTTT
*
70547352 TACCCTCGATTTATAGAATTACT
1 TACCCTCGATTTACAGAATTACT
70547375 ATTTTACCCT
Statistics
Matches: 83, Mismatches: 17, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
80 2 0.02
81 79 0.95
82 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (82 bp):
TACCCTCGATTTACAGAATTACTCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGAT
TTACAGAATTACCGTTT
Found at i:70547380 original size:81 final size:81
Alignment explanation
Indices: 70547244--70547426 Score: 253
Period size: 81 Copynumber: 2.3 Consensus size: 81
70547234 ATTACCAAAG
* * *
70547244 TACCCCCGATTTACAGAATTACCGTTTTACCCCTGATTTACATAATTATCGTTTTACCCTCGACT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTATCATTTTACCCTCGACT
*
70547309 TACAGAATTACCGTTT
66 TACAGAATTACCATTT
* *
70547325 TACCCTCGATTTACAGAATTACCGTTTTA-CCCTCGATTTATAGAATTA-CTATTTTACCCTTGA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCT-GATTTACAGAATTATC-ATTTTACCCTCGA
* *
70547388 TTTACAGAATTACTATTT
64 CTTACAGAATTACCATTT
*
70547406 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
70547427 TAAAATACCC
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
80 5 0.05
81 86 0.95
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTATCATTTTACCCTCGACT
TACAGAATTACCATTT
Found at i:70547463 original size:27 final size:27
Alignment explanation
Indices: 70547420--70547654 Score: 194
Period size: 27 Copynumber: 8.7 Consensus size: 27
70547410 CTCGATTTAC
*
70547420 AAAATTA-TAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
70547446 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
70547473 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * * *
70547500 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
70547527 AAAATTACCAAAATACCCCT-GATT-T
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
70547552 ACAAAGTTA-CAGAAATACCCTTGACTTTCT
1 A-AAA-TTACCA-AAATACCCTT-AGTTTGT
* * * **
70547582 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACCA-AAATACCCTTAGTTTGT
**
70547609 AAAATTACTGAAATACCCTTAG-TTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
70547635 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
70547655 GTAGGATGAA
Statistics
Matches: 167, Mismatches: 34, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
25 2 0.01
26 31 0.19
27 112 0.67
28 15 0.09
29 5 0.03
30 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:70547505 original size:54 final size:54
Alignment explanation
Indices: 70547406--70547544 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
70547396 ATTACTATTT
* ** *
70547406 TACCCTCGATTTACAAAATTA-TAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
70547459 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
70547513 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
70547545 CTGATTTACA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 15 0.20
54 57 0.77
55 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:70547748 original size:27 final size:27
Alignment explanation
Indices: 70547684--70547748 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
70547674 ATACCTATTA
* *
70547684 GGTAAAAAGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
70547711 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
70547738 GGTAAAATGAC
1 GGTAAAATGAC
70547749 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:70549002 original size:9 final size:9
Alignment explanation
Indices: 70548990--70549066 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
70548980 TTTGATAAAC
70548990 ATGATATGT
1 ATGATATGT
*
70548999 ATGATATGCAC
1 ATGATATG--T
70549010 ATGATATGT
1 ATGATATGT
*
70549019 ATGATATGCAC
1 ATGATATG--T
*
70549030 ATGACATGT
1 ATGATATGT
*
70549039 ATGATATGCAC
1 ATGATATG--T
70549050 ATGATATGT
1 ATGATATGT
70549059 ATGATATG
1 ATGATATG
70549067 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:70549015 original size:11 final size:11
Alignment explanation
Indices: 70548999--70549070 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
70548989 CATGATATGT
70548999 ATGATATGCAC
1 ATGATATGCAC
*
70549010 ATGATATG--T
1 ATGATATGCAC
70549019 ATGATATGCAC
1 ATGATATGCAC
* *
70549030 ATGACATG--T
1 ATGATATGCAC
70549039 ATGATATGCAC
1 ATGATATGCAC
*
70549050 ATGATATG--T
1 ATGATATGCAC
70549059 ATGATATGCAC
1 ATGATATGCAC
70549070 A
1 A
70549071 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70549078 original size:20 final size:20
Alignment explanation
Indices: 70548988--70549070 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
70548978 ATTTTGATAA
70548988 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70549008 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70549028 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70549048 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70549068 ACA
1 ACA
70549071 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70549180 original size:24 final size:23
Alignment explanation
Indices: 70549124--70549289 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
70549114 GAGGAAGTGA
70549124 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70549147 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
70549170 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
70549194 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
70549218 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70549240 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
70549265 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70549289 A
1 A
70549290 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
22 21 0.16
23 22 0.17
24 76 0.58
25 11 0.08
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:70549238 original size:70 final size:70
Alignment explanation
Indices: 70549124--70549289 Score: 253
Period size: 70 Copynumber: 2.3 Consensus size: 70
70549114 GAGGAAGTGA
* *
70549124 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTA-TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
70549189 GTTATC
65 GTTATC
*
70549195 AAAAGGGCTTACGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAG
1 AAAAGGGCTTACGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
*
70549260 TTATT
66 TTATC
*
70549265 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTACGCC-CCAGTTATA
70549290 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
70 55 0.62
71 33 0.38
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAGGGCTTACGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
TTATC
Found at i:70549239 original size:46 final size:46
Alignment explanation
Indices: 70549124--70549289 Score: 228
Period size: 46 Copynumber: 3.5 Consensus size: 46
70549114 GAGGAAGTGA
*
70549124 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
*
70549170 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
*
70549218 -AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTA-T
*
70549265 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
70549290 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
46 42 0.39
47 24 0.22
48 31 0.29
49 11 0.10
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:70549515 original size:31 final size:31
Alignment explanation
Indices: 70549480--70549543 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70549470 CGTTTACAGT
*
70549480 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
70549511 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70549542 AA
1 AA
70549544 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70552409 original size:27 final size:27
Alignment explanation
Indices: 70552333--70552422 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
70552323 TTTAGTTTAC
* *
70552333 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
70552360 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
70552387 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
70552414 TAAAATTAC
1 TAAAATTAC
70552423 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:70552432 original size:54 final size:54
Alignment explanation
Indices: 70552333--70552439 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
70552323 TTTAGTTTAC
* * *
70552333 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
70552387 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
70552440 ACAGAATTAG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:70552447 original size:27 final size:27
Alignment explanation
Indices: 70552428--70552638 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 27
70552418 ATTACCAAAG
* *
70552428 TACCCCCGATTTACAGAATTAGCATTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
70552455 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
70552482 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
70552509 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
70552536 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * **
70552563 TACCCTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * *
70552590 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
70552617 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
70552639 TAAAATACCC
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:70552647 original size:27 final size:27
Alignment explanation
Indices: 70552536--70552839 Score: 104
Period size: 27 Copynumber: 11.2 Consensus size: 27
70552526 ATTACCGTTT
* *****
70552536 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
70552563 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ****
70552590 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
70552617 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
70552644 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* *
70552671 TACCC-CTAGTTT-CTAAAATTACCAAAA
1 TACCCTCGA-TTTAC-AAAATTACTAAAA
* *** *
70552698 TACCCT-TAGTTTGTGAAATTA-TCAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *
70552724 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
70552751 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
70552778 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
70552807 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
70552834 TACCCT
1 TACCCT
70552840 TAGTTGTAGA
Statistics
Matches: 226, Mismatches: 35, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
26 23 0.10
27 177 0.78
28 7 0.03
29 19 0.08
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:70552664 original size:54 final size:54
Alignment explanation
Indices: 70552552--70552718 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 54
70552542 CGATTTACAG
* * *** * *
70552552 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTT-GATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAA
*
70552606 AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAA
**** * * *
70552660 AATTACCAAAATACCC-CTAGTTT-CTAAAATTACCAAAATACCCTTAGTTTGTGA
1 AATTACCGTTTTACCCTCGA-TTTAC-AAAATTACTAAAATACCCTTAGTTTGTAA
70552714 AATTA
1 AATTA
70552719 TCAAATACCC
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 3 0.03
54 90 0.96
55 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAA
Found at i:70552664 original size:81 final size:81
Alignment explanation
Indices: 70552374--70552665 Score: 194
Period size: 81 Copynumber: 3.6 Consensus size: 81
70552364 AATACTGAAA
** ** * * * * * *** * *
70552374 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
* *
70552439 TACAGAATTAGCATTT
66 TACAGAATTACCGTTT
* * **** * * *
70552455 TACCCCCGATTTACATAATTACCGTTTTACCCCT-GATTTACATAATTA-TCGTTTTACCCTCGA
1 TACCCTCGATTTACAAAATTACCAAAATA-CCCTAGATTTATAAAATTACT-ATTTTACCCTCGA
70552518 CTTACAGAATTACCGTTT
64 CTTACAGAATTACCGTTT
* **** * * * *
70552536 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
* *
70552601 TATAGAATTACTGTTT
66 TACAGAATTACCGTTT
* *
70552617 TACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTACCAAAATACCC-TAGATTTATAAAATTAC
70552666 CAAAATACCC
Statistics
Matches: 166, Mismatches: 40, Indels: 10
0.77 0.19 0.05
Matches are distributed among these distances:
80 4 0.02
81 156 0.94
82 6 0.04
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
TACAGAATTACCGTTT
Found at i:70552748 original size:53 final size:54
Alignment explanation
Indices: 70552617--70552755 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
70552607 ATTACTGTTT
* * *
70552617 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
70552671 TACCC-CTAGTTTCTAAAATTACCAAAATACCCTTAGTTTGTGAAATTATC-AAA
1 TACCCTC-AATTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
70552724 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTATAAAATTACCAAAATACCC
70552756 CTGATTTACA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
53 32 0.43
54 42 0.57
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:70554220 original size:9 final size:9
Alignment explanation
Indices: 70554208--70554284 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
70554198 TTTGATAAAC
70554208 ATGATATGT
1 ATGATATGT
*
70554217 ATGATATGCAC
1 ATGATATG--T
70554228 ATGATATGT
1 ATGATATGT
*
70554237 ATGATATGCAC
1 ATGATATG--T
*
70554248 ATGACATGT
1 ATGATATGT
*
70554257 ATGATATGCAC
1 ATGATATG--T
70554268 ATGATATGT
1 ATGATATGT
70554277 ATGATATG
1 ATGATATG
70554285 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:70554233 original size:11 final size:11
Alignment explanation
Indices: 70554217--70554288 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
70554207 CATGATATGT
70554217 ATGATATGCAC
1 ATGATATGCAC
*
70554228 ATGATATG--T
1 ATGATATGCAC
70554237 ATGATATGCAC
1 ATGATATGCAC
* *
70554248 ATGACATG--T
1 ATGATATGCAC
70554257 ATGATATGCAC
1 ATGATATGCAC
*
70554268 ATGATATG--T
1 ATGATATGCAC
70554277 ATGATATGCAC
1 ATGATATGCAC
70554288 A
1 A
70554289 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70554296 original size:20 final size:20
Alignment explanation
Indices: 70554206--70554288 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
70554196 ATTTTGATAA
70554206 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70554226 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70554246 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70554266 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70554286 ACA
1 ACA
70554289 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70554372 original size:23 final size:23
Alignment explanation
Indices: 70554341--70554506 Score: 226
Period size: 23 Copynumber: 7.0 Consensus size: 23
70554331 GAGGAAGTGA
70554341 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70554364 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
70554387 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
70554411 CAAAGGGCTTACGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70554434 CAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70554457 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
70554482 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70554506 A
1 A
70554507 TGATAAAGCA
Statistics
Matches: 129, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 65 0.50
24 53 0.41
25 11 0.09
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:70554395 original size:47 final size:47
Alignment explanation
Indices: 70554341--70554506 Score: 237
Period size: 47 Copynumber: 3.5 Consensus size: 47
70554331 GAGGAAGTGA
*
70554341 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* *
70554388 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* *
70554435 -AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
70554482 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
70554507 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
46 22 0.20
47 65 0.60
48 10 0.09
49 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:70554455 original size:70 final size:70
Alignment explanation
Indices: 70554342--70554480 Score: 242
Period size: 70 Copynumber: 2.0 Consensus size: 70
70554332 AGGAAGTGAA
* * *
70554342 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
1 AAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
70554407 TTATC
66 TTATC
*
70554412 AAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAG
1 AAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
70554477 TTAT
66 TTAT
70554481 TAAAAGAGGC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (70 bp):
AAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
TTATC
Found at i:70554762 original size:31 final size:31
Alignment explanation
Indices: 70554699--70554762 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
70554689 CGTTTACCGT
* *
70554699 AAAGGCTTCGGCCCAGTAATATGAAGTTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
70554730 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70554761 AA
1 AA
70554763 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70559383 original size:92 final size:93
Alignment explanation
Indices: 70559173--70559452 Score: 454
Period size: 92 Copynumber: 3.0 Consensus size: 93
70559163 AATGTGACCG
* *
70559173 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTA-GTGTGCA
*
70559238 GAATTAAATGTCACTTTGTGTGCAAATTT
65 GAATTAAATGTCACTTTGTGTGCAGATTT
*
70559267 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTA-TGTGCAA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTAGTGTGCAG
70559331 AATTAAATGTCACTTTGTGTGCAGATTT
66 AATTAAATGTCACTTTGTGTGCAGATTT
* *
70559359 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAAGGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTA-GTGTGCA
* * *
70559424 GAATTAAATGGCACTATGTGTACAGATTT
65 GAATTAAATGTCACTTTGTGTGCAGATTT
70559453 GAATGTCGAT
Statistics
Matches: 174, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
92 89 0.51
94 85 0.49
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (93 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTAGTGTGCAG
AATTAAATGTCACTTTGTGTGCAGATTT
Found at i:70559535 original size:24 final size:25
Alignment explanation
Indices: 70559481--70559544 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
70559471 GAAAATTTCA
70559481 AGCACTATGTGTGCG-GTTTAGTAT
1 AGCACTATGTGTGCGAGTTTAGTAT
* *
70559505 GGAACTATGTGTGCGAGCTTTA-T-T
1 AGCACTATGTGTGCGAG-TTTAGTAT
70559529 AGCACTATGTGTGCGA
1 AGCACTATGTGTGCGA
70559545 ATTCGGTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 28 0.82
25 2 0.06
26 4 0.12
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.34
Consensus pattern (25 bp):
AGCACTATGTGTGCGAGTTTAGTAT
Found at i:70560968 original size:55 final size:55
Alignment explanation
Indices: 70560899--70561005 Score: 205
Period size: 55 Copynumber: 1.9 Consensus size: 55
70560889 TGAACCATTC
70560899 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
1 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
*
70560954 ACTAGTACATATCTCAAGCATAACAAGAAGATATACCATTTGAACTAAGTAA
1 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAA
70561006 CAACCATTTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (55 bp):
ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
Found at i:70561228 original size:17 final size:18
Alignment explanation
Indices: 70561201--70561237 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
70561191 CCTTAAAATG
70561201 GATTTTAAAAATA-AATTA
1 GATTTTAAAAA-AGAATTA
70561219 GATTTT-AAAAAGAATTA
1 GATTTTAAAAAAGAATTA
70561236 GA
1 GA
70561238 AAAGAAAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.06
17 11 0.61
18 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
GATTTTAAAAAAGAATTA
Found at i:70564739 original size:94 final size:94
Alignment explanation
Indices: 70564576--70564828 Score: 470
Period size: 94 Copynumber: 2.7 Consensus size: 94
70564566 AATGTGACCG
* * * *
70564576 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATATGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70564641 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
70564670 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70564735 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
70564764 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
70564829 AGCTTAATTA
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 155 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:70568070 original size:40 final size:39
Alignment explanation
Indices: 70568013--70568197 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
70568003 ATTAAATGAT
* * *
70568013 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
70568053 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
70568093 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
70568133 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
70568173 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
70568198 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:70568149 original size:80 final size:80
Alignment explanation
Indices: 70568012--70568218 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
70568002 AATTAAATGA
* * ** * *
70568012 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
70568077 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
70568090 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
70568155 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
70568172 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
70568219 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:70568203 original size:40 final size:39
Alignment explanation
Indices: 70568011--70568218 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
70568001 CAATTAAATG
* * ** *
70568011 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
70568051 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
70568091 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
70568131 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
70568171 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
70568211 ATATCCGG
1 ATATCCGG
70568219 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:70572820 original size:27 final size:28
Alignment explanation
Indices: 70572790--70572889 Score: 118
Period size: 27 Copynumber: 3.7 Consensus size: 28
70572780 TTAAGTTTAC
*
70572790 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTCGATTTG
* *
70572817 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTCGATTTG
* *
70572844 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTCGATTTG
70572871 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
70572890 CCGATTTACA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.11
27 54 0.86
28 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTCGATTTG
Found at i:70572904 original size:27 final size:27
Alignment explanation
Indices: 70572885--70573095 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 27
70572875 ATTACCAAAG
* *
70572885 TACCCCCGATTTACAGAATTAGCATTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
70572912 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
70572939 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
70572966 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
70572993 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * **
70573020 TACCCTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * *
70573047 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
70573074 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
70573096 TAAAATACCC
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:70573104 original size:27 final size:27
Alignment explanation
Indices: 70572993--70573297 Score: 97
Period size: 27 Copynumber: 11.2 Consensus size: 27
70572983 ATTACCGTTT
* *****
70572993 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
70573020 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ****
70573047 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
70573074 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
70573101 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* *
70573128 TACCC-CTAGTTT-CTAAAATTACCAAAA
1 TACCCTCGA-TTTAC-AAAATTACTAAAA
* *** *
70573155 TACCCT-TAGTTTGTGAAATTA-TCGAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* ** *
70573182 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
70573209 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
70573236 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
70573265 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
70573292 TACCCT
1 TACCCT
70573298 TAGTTGTAGA
Statistics
Matches: 226, Mismatches: 35, Indels: 34
0.77 0.12 0.12
Matches are distributed among these distances:
26 3 0.01
27 196 0.87
28 8 0.04
29 19 0.08
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:70573121 original size:54 final size:54
Alignment explanation
Indices: 70573009--70573213 Score: 155
Period size: 54 Copynumber: 3.8 Consensus size: 54
70572999 CGATTTACAG
* * *** * *
70573009 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTT-GATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAA
*
70573063 AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAA
1 AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAA
**** * * *
70573117 AATTACCAAAATACCC-CTAGTTT-CTAAAATTACCAAAATACCCTTAGTTTGTGA
1 AATTACCGTTTTACCCTCGA-TTTAC-AAAATTACTAAAATACCCTTAGTTTGTAA
* *** * ** *
70573171 AATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCC
1 AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCC
70573214 CTGATTTACA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
53 3 0.02
54 120 0.95
55 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAA
Found at i:70573121 original size:81 final size:81
Alignment explanation
Indices: 70572831--70573122 Score: 194
Period size: 81 Copynumber: 3.6 Consensus size: 81
70572821 AATACTGAAA
** ** * * * * * *** * *
70572831 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
* *
70572896 TACAGAATTAGCATTT
66 TACAGAATTACCGTTT
* * **** * * *
70572912 TACCCCCGATTTACATAATTACCGTTTTACCCCT-GATTTACATAATTA-TCGTTTTACCCTCGA
1 TACCCTCGATTTACAAAATTACCAAAATA-CCCTAGATTTATAAAATTACT-ATTTTACCCTCGA
70572975 CTTACAGAATTACCGTTT
64 CTTACAGAATTACCGTTT
* **** * * * *
70572993 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
* *
70573058 TATAGAATTACTGTTT
66 TACAGAATTACCGTTT
* *
70573074 TACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTACCAAAATACCC-TAGATTTATAAAATTAC
70573123 CAAAATACCC
Statistics
Matches: 166, Mismatches: 40, Indels: 10
0.77 0.19 0.05
Matches are distributed among these distances:
80 4 0.02
81 156 0.94
82 6 0.04
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACTATTTTACCCTCGACT
TACAGAATTACCGTTT
Found at i:70574677 original size:9 final size:9
Alignment explanation
Indices: 70574665--70574741 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
70574655 TTTGATAAAC
70574665 ATGATATGT
1 ATGATATGT
*
70574674 ATGATATGCAC
1 ATGATATG--T
70574685 ATGATATGT
1 ATGATATGT
*
70574694 ATGATATGCAC
1 ATGATATG--T
*
70574705 ATGACATGT
1 ATGATATGT
*
70574714 ATGATATGCAC
1 ATGATATG--T
70574725 ATGATATGT
1 ATGATATGT
70574734 ATGATATG
1 ATGATATG
70574742 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:70574690 original size:11 final size:11
Alignment explanation
Indices: 70574674--70574745 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
70574664 CATGATATGT
70574674 ATGATATGCAC
1 ATGATATGCAC
*
70574685 ATGATATG--T
1 ATGATATGCAC
70574694 ATGATATGCAC
1 ATGATATGCAC
* *
70574705 ATGACATG--T
1 ATGATATGCAC
70574714 ATGATATGCAC
1 ATGATATGCAC
*
70574725 ATGATATG--T
1 ATGATATGCAC
70574734 ATGATATGCAC
1 ATGATATGCAC
70574745 A
1 A
70574746 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70574753 original size:20 final size:20
Alignment explanation
Indices: 70574663--70574745 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
70574653 ATTTTGATAA
70574663 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70574683 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70574703 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70574723 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70574743 ACA
1 ACA
70574746 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70574856 original size:24 final size:24
Alignment explanation
Indices: 70574800--70574965 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
70574790 GAGGAAGTGA
70574800 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
70574823 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
70574847 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
70574871 AAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
70574895 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
70574918 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
70574942 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70574966 ATGATAAAGC
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
23 43 0.33
24 76 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:70574869 original size:47 final size:48
Alignment explanation
Indices: 70574800--70574966 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
70574790 GAGGAAGTGA
*
70574800 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
* *
70574847 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
* *
70574895 -AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
*
70574942 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
70574967 TGATAAAGCA
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 66 0.61
48 31 0.28
49 12 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
Found at i:70574916 original size:71 final size:71
Alignment explanation
Indices: 70574800--70574965 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
70574790 GAGGAAGTGA
* * *
70574800 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
70574865 GTTATC
66 GTTATC
*
70574871 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
70574936 GTTATT
66 GTTATC
*
70574942 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
70574966 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.87
72 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:70575222 original size:31 final size:31
Alignment explanation
Indices: 70575159--70575222 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
70575149 CGTTTACCGT
* *
70575159 AAAGGCTTCGGCCCAGTAATATGAAGTTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
70575190 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70575221 AA
1 AA
70575223 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70579844 original size:92 final size:92
Alignment explanation
Indices: 70579634--70579880 Score: 431
Period size: 92 Copynumber: 2.7 Consensus size: 92
70579624 AATGTGACCG
* *
70579634 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTA--TGTGCA
*
70579699 GAATTAAATGTCACTTTGTGTGCAAATTT
64 AAATTAAATGTCACTTTGTGTGCAAATTT
70579728 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGCAAA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGCAAA
*
70579793 ATTAAATGTCACTTTGTGTGCAGATTT
66 ATTAAATGTCACTTTGTGTGCAAATTT
*
70579820 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAAGGAGTTAACATTGGCACTATGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTG
70579881 TGCGGAATTA
Statistics
Matches: 148, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
92 93 0.63
94 55 0.37
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (92 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGCAAA
ATTAAATGTCACTTTGTGTGCAAATTT
Found at i:70579996 original size:24 final size:25
Alignment explanation
Indices: 70579942--70580005 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
70579932 GAAAATTTCA
70579942 AGCACTATGTGTGCG-GTTTAGTAT
1 AGCACTATGTGTGCGAGTTTAGTAT
* *
70579966 GGAACTATGTGTGCGAGCTTTA-T-T
1 AGCACTATGTGTGCGAG-TTTAGTAT
70579990 AGCACTATGTGTGCGA
1 AGCACTATGTGTGCGA
70580006 ATTCGGTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 28 0.82
25 2 0.06
26 4 0.12
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.34
Consensus pattern (25 bp):
AGCACTATGTGTGCGAGTTTAGTAT
Found at i:70581428 original size:55 final size:55
Alignment explanation
Indices: 70581359--70581465 Score: 205
Period size: 55 Copynumber: 1.9 Consensus size: 55
70581349 TGAACCATTC
70581359 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
1 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
*
70581414 ACTAGTACATATCTCAAGCATAACAAGAAGATATACCATTTGAACTAAGTAA
1 ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAA
70581466 CAACCATTTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (55 bp):
ACTAGTACATATCTCAAGCATAACAACAAGATATACCATTTGAACTAAGTAATTT
Found at i:70581688 original size:17 final size:18
Alignment explanation
Indices: 70581661--70581697 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
70581651 CCTTAAAATG
70581661 GATTTTAAAAATA-AATTA
1 GATTTTAAAAA-AGAATTA
70581679 GATTTT-AAAAAGAATTA
1 GATTTTAAAAAAGAATTA
70581696 GA
1 GA
70581698 AAAGAAAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.06
17 11 0.61
18 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
GATTTTAAAAAAGAATTA
Found at i:70584274 original size:126 final size:126
Alignment explanation
Indices: 70584104--70584356 Score: 452
Period size: 126 Copynumber: 2.0 Consensus size: 126
70584094 AGGGGCTAAA
*
70584104 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAGATTTAAATGCCTACTTTTGTAAATCAAA
1 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGCCTACTTTTGTAAATCAAA
*
70584169 GCATAATTTTTTAATACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
66 GCATAATGTTTTAATACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
* *
70584230 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGTCTACTTTTGTAAATCAAT
1 ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGCCTACTTTTGTAAATCAAA
* *
70584295 GGATAATGTTTTAATACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCTTAAAAC
66 GCATAATGTTTTAATACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
70584356 A
1 A
70584357 CTTGTTTTTA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 121 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (126 bp):
ATACAATAAAGTGCTTTGGAAAACATACATATCTAAAATTTAAATGCCTACTTTTGTAAATCAAA
GCATAATGTTTTAATACTTTTATTTTGAGATTTTTCATTCTTTCAATGTGGTCCCTAAAAC
Found at i:70587399 original size:13 final size:13
Alignment explanation
Indices: 70587381--70587410 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
70587371 GTAACTAGAG
70587381 GAAGGGGAAGAAA
1 GAAGGGGAAGAAA
*
70587394 GAAGGGGAAGAAG
1 GAAGGGGAAGAAA
70587407 GAAG
1 GAAG
70587411 ATTCGGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (13 bp):
GAAGGGGAAGAAA
Found at i:70588554 original size:27 final size:28
Alignment explanation
Indices: 70588498--70588567 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
70588488 AAATTTGTAC
70588498 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
70588526 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
70588553 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70588568 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:70593138 original size:36 final size:36
Alignment explanation
Indices: 70593098--70593206 Score: 191
Period size: 36 Copynumber: 3.0 Consensus size: 36
70593088 GCATTATATA
* * *
70593098 TGATATTTATGTTATCGAATTGTTGGTTGGCAAGTT
1 TGATATTTATGTTATTGAATTTTTGGTTGGTAAGTT
70593134 TGATATTTATGTTATTGAATTTTTGGTTGGTAAGTT
1 TGATATTTATGTTATTGAATTTTTGGTTGGTAAGTT
70593170 TGATATTTATGTTATTGAATTTTTGGTTGGTAAGTT
1 TGATATTTATGTTATTGAATTTTTGGTTGGTAAGTT
70593206 T
1 T
70593207 ACTTATTTAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 70 1.00
ACGTcount: A:0.22, C:0.02, G:0.23, T:0.53
Consensus pattern (36 bp):
TGATATTTATGTTATTGAATTTTTGGTTGGTAAGTT
Found at i:70593172 original size:21 final size:21
Alignment explanation
Indices: 70593148--70593206 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
70593138 ATTTATGTTA
70593148 TTGAATTTTTGGTTGGTAAGT
1 TTGAATTTTTGGTTGGTAAGT
*
70593169 TTGATATTTAT-G-T--T-A--
1 TTGA-ATTTTTGGTTGGTAAGT
70593184 TTGAATTTTTGGTTGGTAAGT
1 TTGAATTTTTGGTTGGTAAGT
70593205 TT
1 TT
70593207 ACTTATTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 16
0.61 0.04 0.35
Matches are distributed among these distances:
14 5 0.18
15 5 0.18
16 1 0.04
17 1 0.04
18 2 0.07
19 1 0.04
20 1 0.04
21 7 0.25
22 5 0.18
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (21 bp):
TTGAATTTTTGGTTGGTAAGT
Found at i:70595098 original size:28 final size:28
Alignment explanation
Indices: 70595050--70595118 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
70595040 ATTTAAACCC
*
70595050 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
70595077 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
70595105 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
70595119 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:70596893 original size:12 final size:12
Alignment explanation
Indices: 70596878--70596902 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70596868 ACAGTAAATA
70596878 ATAAAAATTTTC
1 ATAAAAATTTTC
70596890 ATAAAAATTTTC
1 ATAAAAATTTTC
70596902 A
1 A
70596903 AACATACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAAAAATTTTC
Found at i:70597428 original size:20 final size:19
Alignment explanation
Indices: 70597395--70597435 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
70597385 GTCCCCTGTA
*
70597395 TTTTCAAAAATTTCCTAAG
1 TTTTCAAAAATTTCCCAAG
*
70597414 TTTTCTAAAAGTTTCCCAAG
1 TTTTC-AAAAATTTCCCAAG
70597434 TT
1 TT
70597436 ATCAGCTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.44
Consensus pattern (19 bp):
TTTTCAAAAATTTCCCAAG
Found at i:70603292 original size:20 final size:20
Alignment explanation
Indices: 70603267--70603311 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
70603257 CACCAAAGAA
70603267 GTTCTGAGATGATTTCAATC
1 GTTCTGAGATGATTTCAATC
70603287 GTTCTGAGATGATTTCAATC
1 GTTCTGAGATGATTTCAATC
70603307 GTTCT
1 GTTCT
70603312 AGAGCCACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (20 bp):
GTTCTGAGATGATTTCAATC
Found at i:70604609 original size:23 final size:21
Alignment explanation
Indices: 70604583--70604630 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
70604573 TAAGCAATTT
70604583 ACTAACATGCTTCCCACAATAAA
1 ACTAACA--CTTCCCACAATAAA
70604606 ACT-A-ACTTCCCACAATAAA
1 ACTAACACTTCCCACAATAAA
70604625 ACTAAC
1 ACTAAC
70604631 TCATTTGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
19 17 0.74
20 1 0.04
21 1 0.04
22 1 0.04
23 3 0.13
ACGTcount: A:0.46, C:0.31, G:0.02, T:0.21
Consensus pattern (21 bp):
ACTAACACTTCCCACAATAAA
Found at i:70604616 original size:19 final size:19
Alignment explanation
Indices: 70604592--70604631 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
70604582 TACTAACATG
70604592 CTTCCCACAATAAAACTAA
1 CTTCCCACAATAAAACTAA
70604611 CTTCCCACAATAAAACTAA
1 CTTCCCACAATAAAACTAA
70604630 CT
1 CT
70604632 CATTTGTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.23
Consensus pattern (19 bp):
CTTCCCACAATAAAACTAA
Found at i:70605534 original size:49 final size:48
Alignment explanation
Indices: 70605462--70605693 Score: 232
Period size: 49 Copynumber: 4.7 Consensus size: 48
70605452 CTGGTACGCA
* *
70605462 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTAT-CAGTACACG
* * ** *
70605511 TAGTAGCCTGCACTTAGGACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCAG-TACACG
* * * *
70605561 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGATATCAGGTACGCAG
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCA-GTACAC-G
* ** **
70605613 -AGTAGCCTGGACTTAGTACTACACATACGACCAATTATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA-TCAGTACACG
*
70605661 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
70605694 TCACAATAGC
Statistics
Matches: 149, Mismatches: 26, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
48 1 0.01
49 67 0.45
50 45 0.30
51 34 0.23
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGTACACG
Found at i:70607866 original size:8 final size:8
Alignment explanation
Indices: 70607831--70607866 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
70607821 TTAAAGCGAT
70607831 AAATGCCG
1 AAATGCCG
*
70607839 AAAAGCCG
1 AAATGCCG
*
70607847 AAATACCG
1 AAATGCCG
70607855 AAATGCCG
1 AAATGCCG
70607863 AAAT
1 AAAT
70607867 TCTGGCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.11
Consensus pattern (8 bp):
AAATGCCG
Found at i:70608310 original size:25 final size:25
Alignment explanation
Indices: 70608281--70608328 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70608271 TTATAATATG
* * *
70608281 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70608306 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70608329 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70608379 original size:9 final size:9
Alignment explanation
Indices: 70608367--70608423 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70608357 TTTGATAAAC
70608367 ATGATATGT
1 ATGATATGT
*
70608376 ATGATATGCAC
1 ATGATATG--T
*
70608387 ATGACATGT
1 ATGATATGT
*
70608396 ATGATATGCAC
1 ATGATATG--T
70608407 ATGATATGT
1 ATGATATGT
70608416 ATGATATG
1 ATGATATG
70608424 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:70608390 original size:20 final size:20
Alignment explanation
Indices: 70608365--70608427 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
70608355 ATTTTGATAA
70608365 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70608385 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70608405 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70608425 ACA
1 ACA
70608428 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70608551 original size:47 final size:47
Alignment explanation
Indices: 70608482--70608579 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
70608472 AGGAAGTGCA
70608482 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
70608529 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
70608577 AAA
1 AAA
70608580 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:70608600 original size:25 final size:24
Alignment explanation
Indices: 70608481--70608586 Score: 171
Period size: 23 Copynumber: 4.4 Consensus size: 24
70608471 GAGGAAGTGC
70608481 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
70608505 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
70608529 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
70608552 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
70608577 AAAAGAGGCT
1 AAAAG-GGCT
70608587 AGGCCTCTAG
Statistics
Matches: 78, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
23 28 0.36
24 28 0.36
25 13 0.17
26 9 0.12
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:70608828 original size:31 final size:31
Alignment explanation
Indices: 70608793--70608856 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70608783 CATTTACAGT
70608793 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
70608824 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70608855 AA
1 AA
70608857 TATAAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70611471 original size:15 final size:15
Alignment explanation
Indices: 70611442--70611480 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
70611432 AACAGAGAAG
70611442 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
70611458 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
70611473 CCATGATA
1 CCAAGATA
70611481 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:70614513 original size:24 final size:24
Alignment explanation
Indices: 70614481--70614527 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
70614471 CTGTCAGGAG
*
70614481 AGGATTTAGGAGCTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
70614505 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
70614528 GGAAATCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:70615530 original size:8 final size:8
Alignment explanation
Indices: 70615517--70615548 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
70615507 CTAGATCGGC
70615517 AAAAGCCG
1 AAAAGCCG
70615525 AAAAGCCG
1 AAAAGCCG
*
70615533 AAATGCCG
1 AAAAGCCG
70615541 AAAAGCCG
1 AAAAGCCG
70615549 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:70615833 original size:28 final size:28
Alignment explanation
Indices: 70615793--70615854 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
70615783 ATGTACTAGA
*
70615793 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
70615821 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
70615849 ATACCC
1 ATACCC
70615855 TAGGGTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:70616020 original size:27 final size:27
Alignment explanation
Indices: 70615962--70616051 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
70615952 AGGAAGCGTC
70615962 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
70615990 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
70616017 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
70616046 CTGGTG
1 CTGGTG
70616052 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:70616070 original size:55 final size:56
Alignment explanation
Indices: 70615962--70616076 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
70615952 AGGAAGCGTC
* *
70615962 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
70616017 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
70616073 CTGG
1 CTGG
70616077 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:70623358 original size:8 final size:8
Alignment explanation
Indices: 70623345--70623376 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
70623335 CTAGATCGGC
70623345 AAAAGCCG
1 AAAAGCCG
70623353 AAAAGCCG
1 AAAAGCCG
*
70623361 AAATGCCG
1 AAAAGCCG
70623369 AAAAGCCG
1 AAAAGCCG
70623377 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:70623519 original size:19 final size:19
Alignment explanation
Indices: 70623490--70623582 Score: 168
Period size: 19 Copynumber: 4.8 Consensus size: 19
70623480 TTTGATATTT
70623490 TGGGCTTAATGGGCCAAAAC
1 TGGG-TTAATGGGCCAAAAC
70623510 TGGGTTAATGGGCCAAAAC
1 TGGGTTAATGGGCCAAAAC
*
70623529 TGGGTTAATGGGCCAAAAT
1 TGGGTTAATGGGCCAAAAC
70623548 TGGGTTAATGGGCCAAAAC
1 TGGGTTAATGGGCCAAAAC
70623567 TGGGTTAATGGGCCAA
1 TGGGTTAATGGGCCAA
70623583 CGGGCCCAAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
19 67 0.94
20 4 0.06
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (19 bp):
TGGGTTAATGGGCCAAAAC
Found at i:70623674 original size:44 final size:44
Alignment explanation
Indices: 70623611--70623698 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
70623601 AACACTCGGT
70623611 AAGTGTCTCTGGCTAAACGTAATGGCTACGATATGCATGAAAAC
1 AAGTGTCTCTGGCTAAACGTAATGGCTACGATATGCATGAAAAC
70623655 AAGTGTCTCTGGCTAAACGTAATGGCTACGATATGCATGAAAAC
1 AAGTGTCTCTGGCTAAACGTAATGGCTACGATATGCATGAAAAC
70623699 CTTAGAAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (44 bp):
AAGTGTCTCTGGCTAAACGTAATGGCTACGATATGCATGAAAAC
Found at i:70623764 original size:28 final size:28
Alignment explanation
Indices: 70623724--70623788 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
70623714 ATGTACTAGA
*
70623724 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
70623752 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
70623780 ATACCCCTA
1 ATACCCCTA
70623789 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:70623952 original size:27 final size:27
Alignment explanation
Indices: 70623894--70623983 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
70623884 AGGAAGCGCC
70623894 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
70623922 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
70623949 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
70623978 CTGGTG
1 CTGGTG
70623984 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:70624002 original size:55 final size:56
Alignment explanation
Indices: 70623894--70624008 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
70623884 AGGAAGCGCC
* *
70623894 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
70623949 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
70624005 CTGG
1 CTGG
70624009 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:70625124 original size:49 final size:49
Alignment explanation
Indices: 70625052--70625283 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
70625042 CTGGTATGCA
* *
70625052 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* ** *
70625101 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
** * * ** *
70625151 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCAGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* * *
70625202 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCTGGTTCACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
*
70625251 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
70625284 TCACAATAGC
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 70 0.46
50 47 0.31
51 35 0.23
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:70625221 original size:101 final size:98
Alignment explanation
Indices: 70625052--70625277 Score: 290
Period size: 100 Copynumber: 2.3 Consensus size: 98
70625042 CTGGTATGCA
** * *
70625052 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
70625117 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* * ** *
70625151 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCAGGTATGCATAGTAGCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** * *
70625216 TAGTACTACACATGCGACCAATTATCTGGTTCACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
70625251 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
70625278 GTGACCTCAC
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 28 0.25
100 42 0.38
101 40 0.36
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:70635360 original size:40 final size:40
Alignment explanation
Indices: 70635273--70635422 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
70635263 AATTGAATGA
* * * **
70635273 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
70635313 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
70635354 -ATCCGGGCTAAGACCCGAAGG--ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
70635392 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
70635423 AAATCGTGAT
Statistics
Matches: 88, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
37 1 0.01
38 5 0.06
39 28 0.32
40 52 0.59
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:70643236 original size:40 final size:39
Alignment explanation
Indices: 70643071--70643254 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
70643061 AAATTGAATG
* * *
70643071 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
70643111 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
70643151 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
70643191 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
70643230 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70643255 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:70643279 original size:80 final size:81
Alignment explanation
Indices: 70643111--70643299 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
70643101 GCTGGAAATT
* * * *
70643111 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
70643176 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
70643192 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
70643255 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
70643271 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
70643300 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70650827 original size:40 final size:40
Alignment explanation
Indices: 70650782--70650949 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70650772 CGGAATACAA
70650782 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
70650822 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
70650862 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
70650902 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
70650942 CCGGATAT
1 CCGGATAT
70650950 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:70658873 original size:40 final size:40
Alignment explanation
Indices: 70658828--70658995 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70658818 CGGAATACAA
70658828 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
70658868 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
70658908 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
70658948 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
70658988 CCGGATAT
1 CCGGATAT
70658996 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:70665651 original size:30 final size:30
Alignment explanation
Indices: 70665615--70665676 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
70665605 CCATTTAATA
* *
70665615 TAAACTTTGGGAAAATTACATTTTTGCCCC
1 TAAACTTTGGCAAAATTACACTTTTGCCCC
* * *
70665645 TAAACTTTTGCATAATTACACTTTTGTCCC
1 TAAACTTTGGCAAAATTACACTTTTGCCCC
70665675 TA
1 TA
70665677 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (30 bp):
TAAACTTTGGCAAAATTACACTTTTGCCCC
Found at i:70666768 original size:19 final size:18
Alignment explanation
Indices: 70666729--70666766 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
70666719 CAAAACTCGC
*
70666729 TTCTCTAAATTTTTAAGT
1 TTCTCCAAATTTTTAAGT
70666747 TTCTCCAAATTTTTAAGT
1 TTCTCCAAATTTTTAAGT
70666765 TT
1 TT
70666767 TCAAATGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.55
Consensus pattern (18 bp):
TTCTCCAAATTTTTAAGT
Found at i:70667417 original size:37 final size:38
Alignment explanation
Indices: 70667375--70667464 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 38
70667365 GGGATGTGAT
*
70667375 TTCGTGTAAG-GTCTGGGACATTGGCATCGATATGAGA
1 TTCGTGTAAGAGTCTGGGACATTGGCAACGATATGAGA
70667412 TTCGTGTAAGACAATGTCTGGGACATTGGCAACGATATGAGA
1 TTCGTGTAAG---A-GTCTGGGACATTGGCAACGATATGAGA
70667454 TTCGTGTAAGA
1 TTCGTGTAAGA
70667465 CCATAGCTGG
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
37 10 0.21
39 1 0.02
42 36 0.77
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (38 bp):
TTCGTGTAAGAGTCTGGGACATTGGCAACGATATGAGA
Found at i:70667432 original size:42 final size:43
Alignment explanation
Indices: 70667385--70667491 Score: 166
Period size: 42 Copynumber: 2.5 Consensus size: 43
70667375 TTCGTGTAAG
70667385 GTCTGGGACATTGGCATCGATATGAGATTCGTGTAAGACAAT-
1 GTCTGGGACATTGGCATCGATATGAGATTCGTGTAAGACAATA
* *
70667427 GTCTGGGACATTGGCAACGATATGAGATTCGTGTAAGACCATA
1 GTCTGGGACATTGGCATCGATATGAGATTCGTGTAAGACAATA
70667470 G-CTGGGTA-ATTGGCATCGATAT
1 GTCTGGG-ACATTGGCATCGATAT
70667492 ACTATAACAT
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
42 58 0.97
43 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (43 bp):
GTCTGGGACATTGGCATCGATATGAGATTCGTGTAAGACAATA
Found at i:70673922 original size:18 final size:18
Alignment explanation
Indices: 70673899--70673937 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
70673889 ATAATCAGCA
70673899 CCTCTAGCCTGACCACAG
1 CCTCTAGCCTGACCACAG
70673917 CCTCTAGCCTGACCACAG
1 CCTCTAGCCTGACCACAG
70673935 CCT
1 CCT
70673938 GACCACGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.46, G:0.15, T:0.18
Consensus pattern (18 bp):
CCTCTAGCCTGACCACAG
Found at i:70676360 original size:27 final size:27
Alignment explanation
Indices: 70676330--70676388 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
70676320 AATACAATTA
*
70676330 TTCATAACATAGGGGTATATCAGTCAC
1 TTCATAACATAGGGGTATAACAGTCAC
*** *
70676357 TTCACCTCATAGGGGTATAACAGTCAT
1 TTCATAACATAGGGGTATAACAGTCAC
70676384 TTCAT
1 TTCAT
70676389 CAGCAAGGGG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (27 bp):
TTCATAACATAGGGGTATAACAGTCAC
Found at i:70676397 original size:27 final size:27
Alignment explanation
Indices: 70676337--70676399 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
70676327 TTATTCATAA
* **
70676337 CATAGGGGTATATCAGTCACTTCACCT
1 CATAGGGGTATAACAGTCACTTCACAG
*
70676364 CATAGGGGTATAACAGTCATTTCATCAG
1 CATAGGGGTATAACAGTCACTTCA-CAG
70676392 CA-AGGGGT
1 CATAGGGGT
70676400 CTAAGTGTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (27 bp):
CATAGGGGTATAACAGTCACTTCACAG
Found at i:70680386 original size:24 final size:24
Alignment explanation
Indices: 70680354--70680401 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
70680344 AAAAAATGAA
70680354 CACATTTCATTTTACGAGCCTAGG
1 CACATTTCATTTTACGAGCCTAGG
70680378 CACATTTCATTTTACGAGCCTAGG
1 CACATTTCATTTTACGAGCCTAGG
70680402 GGATAATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (24 bp):
CACATTTCATTTTACGAGCCTAGG
Found at i:70683715 original size:40 final size:40
Alignment explanation
Indices: 70683636--70683820 Score: 155
Period size: 40 Copynumber: 4.6 Consensus size: 40
70683626 TTCGAATGAT
* * * *
70683636 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
70683676 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
70683716 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
70683756 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACTATA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTA-A
* *
70683797 A-CCGGGCTATG-TCCCGAAGGCATT
1 ATCCGGACTAAGAT-CCGAAGGCATT
70683821 TGAATGTGTA
Statistics
Matches: 119, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.92
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:70683814 original size:80 final size:80
Alignment explanation
Indices: 70683636--70683823 Score: 215
Period size: 80 Copynumber: 2.3 Consensus size: 80
70683626 TTCGAATGAT
* *
70683636 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
70683701 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
70683716 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
*
70683777 CATTCGTGCGAGTTACTATA
62 CATACGTGCGAGTTACTA-A
*
70683797 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
70683824 ATGTGTAGCC
Statistics
Matches: 92, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
79 2 0.02
80 80 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:70687226 original size:13 final size:13
Alignment explanation
Indices: 70687208--70687255 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
70687198 GGGGGATAGG
70687208 ATTCTGTATATCT
1 ATTCTGTATATCT
* *
70687221 ATTCTGCATATTT
1 ATTCTGTATATCT
70687234 GATTCTGT-TATCT
1 -ATTCTGTATATCT
70687247 ATATCTGTA
1 AT-TCTGTA
70687256 CCTATAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
12 2 0.07
13 20 0.71
14 6 0.21
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.52
Consensus pattern (13 bp):
ATTCTGTATATCT
Found at i:70700266 original size:24 final size:25
Alignment explanation
Indices: 70700214--70700300 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 25
70700204 AGGTTATGCG
* * *
70700214 GCACTATGTGTGCAAAAACTATATG
1 GCACTATGTGTGCAAAGATTATATA
70700239 GCACTATGTGTGC-AAGATTATATA
1 GCACTATGTGTGCAAAGATTATATA
* * *
70700263 GCACTATGTGTGCGAATGAGTA-AGA
1 GCACTATGTGTGC-AAAGATTATATA
70700288 GCACTATGTGTGC
1 GCACTATGTGTGC
70700301 GGACCTTTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
24 21 0.39
25 28 0.52
26 5 0.09
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (25 bp):
GCACTATGTGTGCAAAGATTATATA
Found at i:70700296 original size:25 final size:25
Alignment explanation
Indices: 70700189--70700301 Score: 94
Period size: 24 Copynumber: 4.6 Consensus size: 25
70700179 AAGAAATTTC
70700189 AGCACTATGTGTGCG-AG-GT-TATG
1 AGCACTATGTGTGCGAAGAGTATA-G
* * * *
70700212 CGGCACTATGTGTGCAAAAACTATATG
1 -AGCACTATGTGTGCGAAGAGTATA-G
* *
70700239 -GCACTATGTGTGC-AAGATTATAT
1 AGCACTATGTGTGCGAAGAGTATAG
70700262 AGCACTATGTGTGCGAATGAGTA-AG
1 AGCACTATGTGTGCGAA-GAGTATAG
70700287 AGCACTATGTGTGCG
1 AGCACTATGTGTGCG
70700302 GACCTTTAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
24 33 0.45
25 32 0.43
26 5 0.07
27 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (25 bp):
AGCACTATGTGTGCGAAGAGTATAG
Found at i:70707906 original size:38 final size:39
Alignment explanation
Indices: 70707815--70707992 Score: 243
Period size: 39 Copynumber: 4.5 Consensus size: 39
70707805 TAATGGAGAA
* *
70707815 TTATATCTGGGCCAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
70707854 TTATATCCGGGCTAAGTCCCGAAGCCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
70707893 -TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
70707931 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
70707970 TTATATCCGAGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
70707993 CATGCTTTGT
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 36 0.29
39 68 0.54
40 22 0.17
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:70707966 original size:77 final size:78
Alignment explanation
Indices: 70707816--70707992 Score: 241
Period size: 77 Copynumber: 2.3 Consensus size: 78
70707806 AATGGAGAAT
* *
70707816 TATATCTGGGCCAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGCCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGCCA
70707881 TTCATGCTGGT-G
66 TTCATGCTGGTAG
* *
70707893 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGC
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGCC
** *
70707958 -TTTGTGCTGGTAT
65 ATTCATGCTGGTAG
*
70707971 TATATCCGAGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
70707993 CATGCTTTGT
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
77 58 0.66
78 21 0.24
79 1 0.01
80 8 0.09
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (78 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGCCA
TTCATGCTGGTAG
Found at i:70709740 original size:17 final size:17
Alignment explanation
Indices: 70709718--70709763 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
70709708 TGGCTGGCAA
*
70709718 TGTGCGAGACACGGTCG
1 TGTGCGAGACACGGCCG
*
70709735 TGTGCGAGACATGGCCG
1 TGTGCGAGACACGGCCG
70709752 TGTGCGAGACAC
1 TGTGCGAGACAC
70709764 AGCCATGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.39, T:0.17
Consensus pattern (17 bp):
TGTGCGAGACACGGCCG
Found at i:70712635 original size:28 final size:27
Alignment explanation
Indices: 70712604--70712657 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
70712594 CTCTTTTGAG
* *
70712604 TTAATAAAGTCTCTTTGAGTTTTTTTTT
1 TTAAGAAAGTCTC-TTGAGTTTCTTTTT
**
70712632 TTAAGAATTTCTCTTGAGTTTCTTTT
1 TTAAGAAAGTCTCTTGAGTTTCTTTT
70712658 GGAAGAGTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.20, C:0.09, G:0.11, T:0.59
Consensus pattern (27 bp):
TTAAGAAAGTCTCTTGAGTTTCTTTTT
Found at i:70714418 original size:40 final size:39
Alignment explanation
Indices: 70714325--70714542 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 39
70714315 AAGCCAAGTA
* * *
70714325 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAATG
*
70714363 CCTTCGGGACATAGCCCGGATATAGTAACTCGCATCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-CAATG
*
70714403 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
*
70714443 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
* * *
70714483 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAATG
70714524 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70714543 TTATCATCCA
Statistics
Matches: 160, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
38 12 0.08
39 20 0.12
40 102 0.64
41 21 0.13
42 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATG
Found at i:70721104 original size:40 final size:39
Alignment explanation
Indices: 70721022--70721201 Score: 188
Period size: 39 Copynumber: 4.6 Consensus size: 39
70721012 GCTACTCGTT
* * *
70721022 CAAATACCTTCGGGACATAGCCCG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
70721061 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
*
70721101 CAAATGCCTTC-GGATCTTAGTCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGATTTAGTAACTCGCA
* * * *
70721140 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
*
70721181 CAAA-GCCTTTGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
70721202 GGACATCATT
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 61 0.50
40 49 0.40
41 13 0.11
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:70721139 original size:39 final size:40
Alignment explanation
Indices: 70721049--70721189 Score: 189
Period size: 39 Copynumber: 3.5 Consensus size: 40
70721039 TAGCCCGTTA
* **
70721049 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
70721089 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCC-GATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
70721128 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
70721168 TAGTCACTTAGCACAAA-GCCTT
1 TAGTAAC-TCGCACAAATGCCTT
70721190 TGGGACTTAG
Statistics
Matches: 92, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
39 42 0.46
40 42 0.46
41 8 0.09
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:70724159 original size:46 final size:44
Alignment explanation
Indices: 70724070--70724289 Score: 169
Period size: 46 Copynumber: 4.8 Consensus size: 44
70724060 GTGTATCTGT
70724070 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CACATCTCG-AG
* *
70724116 GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGAG
* * * *
70724162 GCCGATGCATGTCCCAGACAAGTCTTACACTAGCACTTGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC--ATCTCGAG
* * * * * *
70724208 ACCGATGCCATGCCCCAGACATGGTCTTACACTGGCTC-TCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACATC-T--CGAG
*
70724256 GCTGATGCATGTCCCA-AGCATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGA-CATGTCTTACACTAGC
70724290 TGACAATAAC
Statistics
Matches: 143, Mismatches: 19, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.08
45 18 0.13
46 72 0.50
47 23 0.16
48 18 0.13
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGAG
Found at i:70731861 original size:47 final size:46
Alignment explanation
Indices: 70731719--70731891 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
70731709 GGTCAGACAT
* * * *
70731719 CGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCGTGGC
* * *
70731765 CGATGCATGTCCCAGACATGTCTTATACTAGCT-TACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGTGGC
* *
70731811 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TATGTGGC
1 CGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTCATCT-CGTGGC
*
70731858 CGATGCATGTCTCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
70731892 ACAATAACCC
Statistics
Matches: 107, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
44 7 0.07
45 16 0.15
46 47 0.44
47 36 0.34
48 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGTGGC
Found at i:70731882 original size:93 final size:92
Alignment explanation
Indices: 70731719--70731890 Score: 240
Period size: 93 Copynumber: 1.9 Consensus size: 92
70731709 GGTCAGACAT
*
70731719 CGATGCCATGTCCCAGACATGGTCTTACATTGACACATCTCGTAGCCGATGCATGTCCCAGACAT
1 CGATGCCATGTCCCAGACATGGTCTTACATGGACACATCTCGTAGCCGATGCATGTCCCAGACAT
*
70731784 GTCTTATACTAGCTTACGTCTCGAGGC
66 GTCTTACACTAGCTTACGTCTCGAGGC
* * * * *
70731811 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TATGTGGCCGATGCATGTCTCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACA-TGG-ACACATCT-CGTAGCCGATGCATGTCCCAGA
70731874 CATGTCTTACACTAGCT
63 CATGTCTTACACTAGCT
70731891 CACAATAACC
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
91 23 0.33
92 8 0.11
93 39 0.56
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTACATGGACACATCTCGTAGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTTACGTCTCGAGGC
Found at i:70735996 original size:68 final size:67
Alignment explanation
Indices: 70735924--70736073 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70735914 CATCATGTGT
* * * *
70735924 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70735986 ATGTAG
62 ATGTAG
** * *
70735992 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70736057 AG
66 AG
70736059 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70736074 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Done.